FF:10558-107I9: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005476 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |HumanCAGEScanFiles=NCig10064;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep1.NCig10064.10558-107I9.hg19.GCTATA.pairs.bed.gz!NCig10128;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/osteosarcoma%2520cell%2520line%253aHS-Os-1%252c%2520tech_rep2.NCig10128.10558-107I9.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX007978;DRR008850;DRZ000275;DRZ001660;DRZ011625;DRZ013010 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0002204,UBERON:0001434 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100385,FF:0100407 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100385 | |fonse_cell_line=FF:0100385 | ||
|fonse_cell_line_closure=FF:0100385 | |fonse_cell_line_closure=FF:0100385 | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253aHS-Os-1.CNhs11290.10558-107I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10558-107I9 | |id=FF:10558-107I9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100407 | ||
|is_obsolete= | |||
|library_id=CNhs11290 | |||
|library_id_phase_based=2:CNhs11290 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10558 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10558 | |||
|name=osteosarcoma cell line:HS-Os-1 | |name=osteosarcoma cell line:HS-Os-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=NCig10064,,, | |profile_cagescan=NCig10064,,, | ||
|profile_hcage=CNhs11290,LSID759,release008,COMPLETED | |profile_hcage=CNhs11290,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0148629136884266,0,-0.196044461682561,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0078678939504681,0,0,0,0,0,-0.0191690597445283,0,0,-0.132956589778862,0,0,0,0,0,0,0,0.0787888365235292,0,0.0787888365235292,0,0,-0.151277994051549,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.051087203658963,0,0.0484627551553544,0,0,-0.0185547906895677,0,0,0,0,0,0,0,0,0.0787888365235292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0203122963553601,0.0799615149430052,0,0.14545511639796,0,0.254225290755653,0.105201210857017,-0.0990827825391304,0,0,0,0,0,0,0.203236562094724,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.129448189001493,-0.265023433040523,0,0,0,0,0,0 | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=49.1575 | |rna_weight_ug=49.1575 | ||
|sample_age=11 | |sample_age=11 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2229 | |sample_cell_catalog=RCB2229 | ||
|sample_cell_line=HS-Os-1 | |sample_cell_line=HS-Os-1 | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.15166631471354e-248!GO:0043231;intracellular membrane-bound organelle;9.74470775189258e-215!GO:0043227;membrane-bound organelle;9.74470775189258e-215!GO:0043226;organelle;8.28598230505586e-213!GO:0043229;intracellular organelle;3.11147605320413e-212!GO:0005737;cytoplasm;1.74978742018503e-161!GO:0044422;organelle part;1.68371745610328e-144!GO:0044446;intracellular organelle part;1.02234414180277e-142!GO:0044444;cytoplasmic part;4.48553721398553e-120!GO:0032991;macromolecular complex;9.29248202542488e-99!GO:0005634;nucleus;1.8086753925315e-97!GO:0044238;primary metabolic process;6.47893343129446e-96!GO:0044237;cellular metabolic process;3.81554129008746e-94!GO:0043170;macromolecule metabolic process;2.70189496279785e-90!GO:0030529;ribonucleoprotein complex;1.82937148455429e-87!GO:0043233;organelle lumen;6.18208034398108e-80!GO:0031974;membrane-enclosed lumen;6.18208034398108e-80!GO:0044428;nuclear part;1.34712220143724e-79!GO:0005515;protein binding;1.84683138706651e-75!GO:0003723;RNA binding;2.41018546216798e-72!GO:0043283;biopolymer metabolic process;1.04605398875176e-59!GO:0010467;gene expression;1.68961342013726e-59!GO:0006396;RNA processing;3.84977438564818e-57!GO:0005739;mitochondrion;3.68062827846394e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.4946163790216e-56!GO:0031981;nuclear lumen;1.73162872389955e-50!GO:0016043;cellular component organization and biogenesis;1.04922135296232e-49!GO:0005840;ribosome;7.5969367136714e-49!GO:0043234;protein complex;2.50228666672117e-48!GO:0031090;organelle membrane;1.07460018575029e-47!GO:0006412;translation;9.19108588247685e-46!GO:0016071;mRNA metabolic process;6.1815577643198e-45!GO:0003735;structural constituent of ribosome;2.73807290890309e-43!GO:0008380;RNA splicing;7.11075332915482e-41!GO:0003676;nucleic acid binding;3.77175196782659e-40!GO:0033036;macromolecule localization;1.52884001071938e-39!GO:0044429;mitochondrial part;1.04081234265523e-38!GO:0006397;mRNA processing;1.34430033858858e-38!GO:0019538;protein metabolic process;2.84187833074335e-38!GO:0015031;protein transport;8.41372790602723e-38!GO:0009058;biosynthetic process;6.60259728448157e-37!GO:0033279;ribosomal subunit;3.88367162309186e-36!GO:0008104;protein localization;1.58171138361071e-35!GO:0044249;cellular biosynthetic process;1.79901152691808e-35!GO:0031967;organelle envelope;2.69600345207038e-35!GO:0031975;envelope;3.37874292437683e-35!GO:0045184;establishment of protein localization;8.56504659110291e-35!GO:0009059;macromolecule biosynthetic process;2.68012155822072e-34!GO:0016070;RNA metabolic process;4.74667459817388e-34!GO:0046907;intracellular transport;1.12730956730313e-33!GO:0044267;cellular protein metabolic process;3.40770536081225e-33!GO:0044260;cellular macromolecule metabolic process;4.4139351007705e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.33774130731009e-32!GO:0006996;organelle organization and biogenesis;7.7611255643494e-32!GO:0005654;nucleoplasm;3.08006511624453e-31!GO:0043228;non-membrane-bound organelle;4.75832832503971e-31!GO:0043232;intracellular non-membrane-bound organelle;4.75832832503971e-31!GO:0065003;macromolecular complex assembly;2.34252426697067e-29!GO:0005681;spliceosome;4.32959617492151e-29!GO:0006259;DNA metabolic process;4.46880469538388e-29!GO:0006886;intracellular protein transport;5.50269033704e-28!GO:0005829;cytosol;6.82972016058574e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.19939354479756e-26!GO:0044451;nucleoplasm part;1.2140037675219e-25!GO:0022607;cellular component assembly;3.87614588139887e-25!GO:0005740;mitochondrial envelope;2.0282536767137e-24!GO:0000166;nucleotide binding;2.73417918556741e-24!GO:0007049;cell cycle;1.22507241293285e-23!GO:0031966;mitochondrial membrane;3.18626997174873e-23!GO:0019866;organelle inner membrane;8.40955429620091e-23!GO:0005783;endoplasmic reticulum;2.45478748400166e-22!GO:0051649;establishment of cellular localization;3.79362895633046e-22!GO:0051641;cellular localization;4.52172245069313e-22!GO:0006119;oxidative phosphorylation;7.24404696977709e-21!GO:0012505;endomembrane system;8.92537070311593e-21!GO:0005743;mitochondrial inner membrane;1.08399877740282e-20!GO:0044445;cytosolic part;1.11303449296345e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.81328507599044e-19!GO:0044432;endoplasmic reticulum part;2.06244827065688e-19!GO:0016462;pyrophosphatase activity;2.11774484052737e-19!GO:0005730;nucleolus;2.39346256804604e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.79898406732616e-19!GO:0006457;protein folding;2.85967914098707e-19!GO:0015935;small ribosomal subunit;1.52409285703645e-18!GO:0015934;large ribosomal subunit;1.67060324004121e-18!GO:0022618;protein-RNA complex assembly;2.06496294421033e-18!GO:0048770;pigment granule;2.65210200014173e-18!GO:0042470;melanosome;2.65210200014173e-18!GO:0044455;mitochondrial membrane part;2.65210200014173e-18!GO:0017111;nucleoside-triphosphatase activity;3.02481273030412e-18!GO:0022402;cell cycle process;1.04358825898537e-17!GO:0031980;mitochondrial lumen;2.31547180812504e-17!GO:0005759;mitochondrial matrix;2.31547180812504e-17!GO:0016874;ligase activity;2.92054744459662e-17!GO:0008134;transcription factor binding;3.70872449763371e-17!GO:0032553;ribonucleotide binding;4.24362917635295e-17!GO:0032555;purine ribonucleotide binding;4.24362917635295e-17!GO:0006974;response to DNA damage stimulus;1.27231317957118e-16!GO:0017076;purine nucleotide binding;1.77622796543174e-16!GO:0006512;ubiquitin cycle;5.21075773724895e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.92615902597789e-16!GO:0019941;modification-dependent protein catabolic process;1.41078796621755e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.41078796621755e-15!GO:0044265;cellular macromolecule catabolic process;1.46628059564174e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.69176975787593e-15!GO:0008135;translation factor activity, nucleic acid binding;2.08475202329224e-15!GO:0032559;adenyl ribonucleotide binding;2.68934733251193e-15!GO:0000278;mitotic cell cycle;2.77069641497114e-15!GO:0044257;cellular protein catabolic process;3.01355364102974e-15!GO:0005524;ATP binding;3.06768077949521e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.84535948314146e-15!GO:0042254;ribosome biogenesis and assembly;8.27315084652698e-15!GO:0005746;mitochondrial respiratory chain;1.29019598960782e-14!GO:0005694;chromosome;1.3610417259877e-14!GO:0043285;biopolymer catabolic process;1.51232436230222e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.62610853654384e-14!GO:0000375;RNA splicing, via transesterification reactions;1.62610853654384e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.62610853654384e-14!GO:0030554;adenyl nucleotide binding;1.76387942917843e-14!GO:0006605;protein targeting;2.69233370771961e-14!GO:0006281;DNA repair;5.54414447289367e-14!GO:0006366;transcription from RNA polymerase II promoter;1.13741401384257e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.17956585876797e-13!GO:0003954;NADH dehydrogenase activity;1.17956585876797e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.17956585876797e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.58527126616414e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.66101817061012e-13!GO:0005761;mitochondrial ribosome;1.67499513187873e-13!GO:0000313;organellar ribosome;1.67499513187873e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.71542946197377e-13!GO:0005789;endoplasmic reticulum membrane;2.54500805430834e-13!GO:0051186;cofactor metabolic process;2.79868768398316e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.66929080938655e-13!GO:0030163;protein catabolic process;5.74354181742335e-13!GO:0009057;macromolecule catabolic process;6.54724392722132e-13!GO:0051301;cell division;8.78237139428096e-13!GO:0005794;Golgi apparatus;1.2321069685014e-12!GO:0016887;ATPase activity;1.76439704971844e-12!GO:0042623;ATPase activity, coupled;2.05033231715622e-12!GO:0006260;DNA replication;2.43809655481784e-12!GO:0051276;chromosome organization and biogenesis;4.28699741634635e-12!GO:0004386;helicase activity;4.30336954171869e-12!GO:0000087;M phase of mitotic cell cycle;4.77750620361645e-12!GO:0048193;Golgi vesicle transport;5.13351136189297e-12!GO:0031965;nuclear membrane;5.29028206090431e-12!GO:0050794;regulation of cellular process;6.12325523253414e-12!GO:0016192;vesicle-mediated transport;6.65821052700313e-12!GO:0007067;mitosis;7.09939145306966e-12!GO:0042775;organelle ATP synthesis coupled electron transport;7.63753057368694e-12!GO:0042773;ATP synthesis coupled electron transport;7.63753057368694e-12!GO:0006399;tRNA metabolic process;8.21322639762934e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.94751154922413e-12!GO:0051082;unfolded protein binding;9.81612598432051e-12!GO:0016604;nuclear body;1.10161585408524e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.12407742566921e-11!GO:0045271;respiratory chain complex I;1.12407742566921e-11!GO:0005747;mitochondrial respiratory chain complex I;1.12407742566921e-11!GO:0003743;translation initiation factor activity;1.40206414036332e-11!GO:0044248;cellular catabolic process;1.55275739192094e-11!GO:0005635;nuclear envelope;1.68659399461037e-11!GO:0009719;response to endogenous stimulus;1.91179186407894e-11!GO:0006413;translational initiation;2.61883682467014e-11!GO:0044453;nuclear membrane part;2.95087008184753e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.21973939318842e-11!GO:0043412;biopolymer modification;3.28104891381738e-11!GO:0006913;nucleocytoplasmic transport;3.79635878880365e-11!GO:0006446;regulation of translational initiation;3.86335686250846e-11!GO:0044427;chromosomal part;4.2651257612199e-11!GO:0006732;coenzyme metabolic process;6.72177719873248e-11!GO:0008565;protein transporter activity;8.38377621154692e-11!GO:0051169;nuclear transport;9.47589879597594e-11!GO:0022403;cell cycle phase;9.62397375184931e-11!GO:0000074;regulation of progression through cell cycle;1.38693199492608e-10!GO:0051726;regulation of cell cycle;1.39093115843835e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.52891376987055e-10!GO:0008026;ATP-dependent helicase activity;2.04016959793875e-10!GO:0003712;transcription cofactor activity;2.20872681577363e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.24815883459462e-10!GO:0019222;regulation of metabolic process;3.68094096392171e-10!GO:0006163;purine nucleotide metabolic process;4.03272971541877e-10!GO:0009259;ribonucleotide metabolic process;4.05564050625105e-10!GO:0016607;nuclear speck;4.05564050625105e-10!GO:0006323;DNA packaging;4.53087027231921e-10!GO:0050657;nucleic acid transport;1.10181315107842e-09!GO:0051236;establishment of RNA localization;1.10181315107842e-09!GO:0050658;RNA transport;1.10181315107842e-09!GO:0005793;ER-Golgi intermediate compartment;1.25946208402633e-09!GO:0006403;RNA localization;1.30875834573988e-09!GO:0006461;protein complex assembly;1.44960042980593e-09!GO:0009150;purine ribonucleotide metabolic process;1.66729270387339e-09!GO:0005643;nuclear pore;1.84568150272221e-09!GO:0006164;purine nucleotide biosynthetic process;1.9529625084825e-09!GO:0006364;rRNA processing;2.15489764719052e-09!GO:0006464;protein modification process;2.2996200221419e-09!GO:0065002;intracellular protein transport across a membrane;2.55781928881098e-09!GO:0017038;protein import;4.65291118187133e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.78973704611509e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.78973704611509e-09!GO:0009260;ribonucleotide biosynthetic process;5.55101308696813e-09!GO:0016072;rRNA metabolic process;5.85184993136142e-09!GO:0016568;chromatin modification;6.74662801183056e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.74662801183056e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.74662801183056e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.74662801183056e-09!GO:0005788;endoplasmic reticulum lumen;6.91932972199093e-09!GO:0019829;cation-transporting ATPase activity;7.36700305084482e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.80337216248295e-09!GO:0005667;transcription factor complex;8.89408800467567e-09!GO:0050789;regulation of biological process;9.79072726448892e-09!GO:0000279;M phase;1.18617565638337e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.19461542869312e-08!GO:0043038;amino acid activation;1.35690389826145e-08!GO:0006418;tRNA aminoacylation for protein translation;1.35690389826145e-08!GO:0043039;tRNA aminoacylation;1.35690389826145e-08!GO:0009141;nucleoside triphosphate metabolic process;1.68356843182744e-08!GO:0015986;ATP synthesis coupled proton transport;1.94312488174068e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.94312488174068e-08!GO:0009060;aerobic respiration;2.05927906901011e-08!GO:0008639;small protein conjugating enzyme activity;2.10296451022708e-08!GO:0045333;cellular respiration;2.49349590228914e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.62171466466997e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.62171466466997e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.77531819398541e-08!GO:0004842;ubiquitin-protein ligase activity;3.13970952489385e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.55830284878296e-08!GO:0046034;ATP metabolic process;4.62850408004121e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.79253797069791e-08!GO:0048475;coated membrane;4.92972503837185e-08!GO:0030117;membrane coat;4.92972503837185e-08!GO:0031323;regulation of cellular metabolic process;5.23011207754618e-08!GO:0015630;microtubule cytoskeleton;5.44040170893045e-08!GO:0019787;small conjugating protein ligase activity;6.01055817909016e-08!GO:0006350;transcription;6.16892666037893e-08!GO:0051028;mRNA transport;6.5700432715068e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.71971372552593e-08!GO:0043687;post-translational protein modification;8.87921642766523e-08!GO:0030120;vesicle coat;1.12572598946125e-07!GO:0030662;coated vesicle membrane;1.12572598946125e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.14728845364802e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.14728845364802e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.32511464064942e-07!GO:0009055;electron carrier activity;1.41750744915086e-07!GO:0043566;structure-specific DNA binding;1.79493859923928e-07!GO:0006099;tricarboxylic acid cycle;2.09483691445115e-07!GO:0046356;acetyl-CoA catabolic process;2.09483691445115e-07!GO:0006752;group transfer coenzyme metabolic process;2.15166276430383e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.58725035483091e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.58725035483091e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.77727933410395e-07!GO:0046930;pore complex;3.61439781783095e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.82314703342189e-07!GO:0051187;cofactor catabolic process;3.92334182536471e-07!GO:0006754;ATP biosynthetic process;3.92334182536471e-07!GO:0006753;nucleoside phosphate metabolic process;3.92334182536471e-07!GO:0005798;Golgi-associated vesicle;3.98233676141302e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.01974327924213e-07!GO:0009109;coenzyme catabolic process;4.70333306314433e-07!GO:0005768;endosome;5.83628511665429e-07!GO:0006915;apoptosis;6.33529402457889e-07!GO:0012501;programmed cell death;6.55784774765875e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.74908028725051e-07!GO:0000245;spliceosome assembly;7.78628539478886e-07!GO:0010468;regulation of gene expression;8.39362979717493e-07!GO:0009056;catabolic process;9.87618149060602e-07!GO:0008654;phospholipid biosynthetic process;1.03571666517677e-06!GO:0016563;transcription activator activity;1.05032144243358e-06!GO:0016853;isomerase activity;1.11027453148903e-06!GO:0007005;mitochondrion organization and biogenesis;1.16969092151253e-06!GO:0000785;chromatin;1.1966229586258e-06!GO:0006084;acetyl-CoA metabolic process;1.23175590685589e-06!GO:0051188;cofactor biosynthetic process;1.24717929355294e-06!GO:0016881;acid-amino acid ligase activity;1.34663775326575e-06!GO:0006606;protein import into nucleus;1.59884952337042e-06!GO:0032774;RNA biosynthetic process;1.80337802427783e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.93566248711496e-06!GO:0006351;transcription, DNA-dependent;2.13213926582902e-06!GO:0051170;nuclear import;2.38803085875928e-06!GO:0003697;single-stranded DNA binding;2.44128654889387e-06!GO:0048523;negative regulation of cellular process;2.59020980063031e-06!GO:0031988;membrane-bound vesicle;2.96467341360289e-06!GO:0003713;transcription coactivator activity;3.10169252056518e-06!GO:0045786;negative regulation of progression through cell cycle;3.19245659618532e-06!GO:0051427;hormone receptor binding;4.17607650498534e-06!GO:0044431;Golgi apparatus part;4.2342657872778e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.55619010017081e-06!GO:0006613;cotranslational protein targeting to membrane;4.55619010017081e-06!GO:0005819;spindle;4.62341458655069e-06!GO:0000151;ubiquitin ligase complex;4.67760706971226e-06!GO:0006333;chromatin assembly or disassembly;5.36861399815904e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.37068179071069e-06!GO:0043623;cellular protein complex assembly;5.53854141707121e-06!GO:0009117;nucleotide metabolic process;5.59581065065882e-06!GO:0008219;cell death;6.07273805087381e-06!GO:0016265;death;6.07273805087381e-06!GO:0045259;proton-transporting ATP synthase complex;6.12707238164776e-06!GO:0006261;DNA-dependent DNA replication;6.26775803040795e-06!GO:0005813;centrosome;6.60938662570369e-06!GO:0016859;cis-trans isomerase activity;7.19888718737189e-06!GO:0035257;nuclear hormone receptor binding;8.11909845679296e-06!GO:0016779;nucleotidyltransferase activity;8.28010032987235e-06!GO:0003724;RNA helicase activity;9.26591745519657e-06!GO:0005815;microtubule organizing center;9.26591745519657e-06!GO:0065004;protein-DNA complex assembly;1.06794242230192e-05!GO:0031982;vesicle;1.11326370051488e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.13895888866136e-05!GO:0009108;coenzyme biosynthetic process;1.23656993857416e-05!GO:0016564;transcription repressor activity;1.27821260419573e-05!GO:0016740;transferase activity;1.3138843058098e-05!GO:0003899;DNA-directed RNA polymerase activity;1.45228459479905e-05!GO:0000775;chromosome, pericentric region;1.63970153318814e-05!GO:0031410;cytoplasmic vesicle;2.14956710608513e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.5094299497409e-05!GO:0044440;endosomal part;2.5094299497409e-05!GO:0010008;endosome membrane;2.5094299497409e-05!GO:0032446;protein modification by small protein conjugation;2.64506378247668e-05!GO:0031324;negative regulation of cellular metabolic process;2.8005269488341e-05!GO:0045449;regulation of transcription;3.13957185143866e-05!GO:0003677;DNA binding;3.80045938355484e-05!GO:0016567;protein ubiquitination;4.37787414946927e-05!GO:0003702;RNA polymerase II transcription factor activity;4.85256527223643e-05!GO:0030867;rough endoplasmic reticulum membrane;4.88660278810428e-05!GO:0051789;response to protein stimulus;6.90125822700046e-05!GO:0006986;response to unfolded protein;6.90125822700046e-05!GO:0051246;regulation of protein metabolic process;7.1245058297697e-05!GO:0016481;negative regulation of transcription;7.75228760830201e-05!GO:0048519;negative regulation of biological process;7.96881286964491e-05!GO:0005839;proteasome core complex (sensu Eukaryota);8.0884380625334e-05!GO:0003714;transcription corepressor activity;8.3703803429071e-05!GO:0003682;chromatin binding;8.40920878803699e-05!GO:0046474;glycerophospholipid biosynthetic process;8.89814661485281e-05!GO:0003729;mRNA binding;8.90050917670039e-05!GO:0007051;spindle organization and biogenesis;8.96088360139544e-05!GO:0003924;GTPase activity;9.21962804862129e-05!GO:0000139;Golgi membrane;9.29839235027558e-05!GO:0016363;nuclear matrix;9.59142530660368e-05!GO:0006355;regulation of transcription, DNA-dependent;0.000103528221030666!GO:0008361;regulation of cell size;0.000105240600518397!GO:0005762;mitochondrial large ribosomal subunit;0.000114540453554117!GO:0000315;organellar large ribosomal subunit;0.000114540453554117!GO:0016049;cell growth;0.000134517401412455!GO:0043021;ribonucleoprotein binding;0.000141324647430917!GO:0044452;nucleolar part;0.000148445161179935!GO:0008033;tRNA processing;0.000150678806457687!GO:0030133;transport vesicle;0.00015281198408659!GO:0004576;oligosaccharyl transferase activity;0.00016193548468194!GO:0051329;interphase of mitotic cell cycle;0.000175876912056251!GO:0000314;organellar small ribosomal subunit;0.000187121029517001!GO:0005763;mitochondrial small ribosomal subunit;0.000187121029517001!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000195870596160622!GO:0008250;oligosaccharyl transferase complex;0.0002300040225846!GO:0051325;interphase;0.000247545427925221!GO:0065007;biological regulation;0.00025053664920431!GO:0016251;general RNA polymerase II transcription factor activity;0.000259117357450914!GO:0003678;DNA helicase activity;0.000263889046509599!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000267768999905824!GO:0003690;double-stranded DNA binding;0.000268357154683229!GO:0004298;threonine endopeptidase activity;0.000284092974514173!GO:0005770;late endosome;0.000284092974514173!GO:0008186;RNA-dependent ATPase activity;0.000323926686758582!GO:0009892;negative regulation of metabolic process;0.000330832840559343!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00034137273076783!GO:0016126;sterol biosynthetic process;0.000344300378017402!GO:0006793;phosphorus metabolic process;0.000370294386010173!GO:0006796;phosphate metabolic process;0.000370294386010173!GO:0007010;cytoskeleton organization and biogenesis;0.000384523341414479!GO:0005791;rough endoplasmic reticulum;0.000389608616720137!GO:0005769;early endosome;0.000410952736149961!GO:0051168;nuclear export;0.000448950676711899!GO:0032508;DNA duplex unwinding;0.000470474545294931!GO:0032392;DNA geometric change;0.000470474545294931!GO:0033116;ER-Golgi intermediate compartment membrane;0.000502943260736998!GO:0006612;protein targeting to membrane;0.000516546408963013!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000519694450635243!GO:0005773;vacuole;0.000526315602973317!GO:0006402;mRNA catabolic process;0.00056855889788027!GO:0006839;mitochondrial transport;0.000573525499931339!GO:0016741;transferase activity, transferring one-carbon groups;0.000584140240313201!GO:0008168;methyltransferase activity;0.000628384596871349!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000633901502897576!GO:0015399;primary active transmembrane transporter activity;0.000633901502897576!GO:0030663;COPI coated vesicle membrane;0.000651802320169274!GO:0030126;COPI vesicle coat;0.000651802320169274!GO:0006383;transcription from RNA polymerase III promoter;0.000672303495964561!GO:0046489;phosphoinositide biosynthetic process;0.000698996318721799!GO:0005525;GTP binding;0.000733532986239082!GO:0000059;protein import into nucleus, docking;0.000742310396785974!GO:0016310;phosphorylation;0.000829107377104756!GO:0000049;tRNA binding;0.000892941415904313!GO:0006401;RNA catabolic process;0.000917794742007412!GO:0051920;peroxiredoxin activity;0.000921715291302181!GO:0016787;hydrolase activity;0.000945891089326773!GO:0004004;ATP-dependent RNA helicase activity;0.000946413754700719!GO:0005657;replication fork;0.00095504991302391!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000963736704270969!GO:0006650;glycerophospholipid metabolic process;0.000969262179326756!GO:0009165;nucleotide biosynthetic process;0.000971651081347119!GO:0030658;transport vesicle membrane;0.000975842313349508!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00101082047675407!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00107825163900174!GO:0005048;signal sequence binding;0.00107926865509836!GO:0045454;cell redox homeostasis;0.00107926865509836!GO:0006626;protein targeting to mitochondrion;0.00114090236954008!GO:0015980;energy derivation by oxidation of organic compounds;0.0011786256363873!GO:0006302;double-strand break repair;0.00118882230984763!GO:0005885;Arp2/3 protein complex;0.00123777036449788!GO:0006818;hydrogen transport;0.00126543596338214!GO:0018196;peptidyl-asparagine modification;0.00128286926035891!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00128286926035891!GO:0008094;DNA-dependent ATPase activity;0.00131006236956491!GO:0046467;membrane lipid biosynthetic process;0.00132544958705663!GO:0008610;lipid biosynthetic process;0.00132788160403203!GO:0042981;regulation of apoptosis;0.00134832242801551!GO:0000323;lytic vacuole;0.00135480262672297!GO:0005764;lysosome;0.00135480262672297!GO:0043681;protein import into mitochondrion;0.00137781371914835!GO:0006310;DNA recombination;0.00137781371914835!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00138238731535873!GO:0015992;proton transport;0.00140929874895118!GO:0006414;translational elongation;0.00141294575255245!GO:0001558;regulation of cell growth;0.00144755892911801!GO:0043069;negative regulation of programmed cell death;0.00144795877464266!GO:0030118;clathrin coat;0.00145799395399778!GO:0000776;kinetochore;0.00147473982463831!GO:0031252;leading edge;0.0014864142867333!GO:0006268;DNA unwinding during replication;0.0014869182613312!GO:0006352;transcription initiation;0.00151312620539455!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00151350969835759!GO:0045892;negative regulation of transcription, DNA-dependent;0.00152579079614849!GO:0030176;integral to endoplasmic reticulum membrane;0.00153032683794642!GO:0043066;negative regulation of apoptosis;0.00159985653299483!GO:0048500;signal recognition particle;0.00160354762791528!GO:0030521;androgen receptor signaling pathway;0.00166063241721456!GO:0051252;regulation of RNA metabolic process;0.00171261462920265!GO:0006916;anti-apoptosis;0.00175040950658342!GO:0031968;organelle outer membrane;0.00178953223883296!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00182083803097763!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00182083803097763!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00182083803097763!GO:0043067;regulation of programmed cell death;0.00184486418089853!GO:0030137;COPI-coated vesicle;0.00186321751150626!GO:0035258;steroid hormone receptor binding;0.00189607285135003!GO:0005684;U2-dependent spliceosome;0.00205607664766238!GO:0019843;rRNA binding;0.00208813229378347!GO:0015631;tubulin binding;0.00214796330990113!GO:0030660;Golgi-associated vesicle membrane;0.00218877435456599!GO:0019867;outer membrane;0.0022267528200842!GO:0007052;mitotic spindle organization and biogenesis;0.00227308934613634!GO:0048471;perinuclear region of cytoplasm;0.00234312066092657!GO:0000910;cytokinesis;0.00238390874186712!GO:0016491;oxidoreductase activity;0.00243445429933393!GO:0000075;cell cycle checkpoint;0.00243695135579224!GO:0019899;enzyme binding;0.00244801906441972!GO:0030880;RNA polymerase complex;0.00254055776816075!GO:0005741;mitochondrial outer membrane;0.00266620987465576!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0026847652398003!GO:0045047;protein targeting to ER;0.0026847652398003!GO:0006338;chromatin remodeling;0.00273277117074802!GO:0006497;protein amino acid lipidation;0.00285898664319866!GO:0008312;7S RNA binding;0.00294885582796601!GO:0003746;translation elongation factor activity;0.00297131908399109!GO:0016044;membrane organization and biogenesis;0.00327012159741603!GO:0030384;phosphoinositide metabolic process;0.00376101163200422!GO:0005637;nuclear inner membrane;0.00379075698137792!GO:0006891;intra-Golgi vesicle-mediated transport;0.00389669724891091!GO:0004527;exonuclease activity;0.00393800508952365!GO:0005874;microtubule;0.00397282804958969!GO:0051052;regulation of DNA metabolic process;0.00402852736846231!GO:0051101;regulation of DNA binding;0.00402852736846231!GO:0006506;GPI anchor biosynthetic process;0.00405984634151023!GO:0005583;fibrillar collagen;0.00407822985837443!GO:0030134;ER to Golgi transport vesicle;0.00411932071006838!GO:0032561;guanyl ribonucleotide binding;0.00417513847992568!GO:0019001;guanyl nucleotide binding;0.00417513847992568!GO:0006695;cholesterol biosynthetic process;0.00435369183558463!GO:0006505;GPI anchor metabolic process;0.00437269021460523!GO:0005905;coated pit;0.00450306938650075!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00451818690268076!GO:0030036;actin cytoskeleton organization and biogenesis;0.00462892799515705!GO:0051087;chaperone binding;0.00463753762390022!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00470854529952771!GO:0043488;regulation of mRNA stability;0.00482631303072414!GO:0043487;regulation of RNA stability;0.00482631303072414!GO:0042158;lipoprotein biosynthetic process;0.00536404416812916!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00536563401175721!GO:0000428;DNA-directed RNA polymerase complex;0.00536563401175721!GO:0031072;heat shock protein binding;0.00536629638134116!GO:0022890;inorganic cation transmembrane transporter activity;0.00544689892548603!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00564462959530334!GO:0043284;biopolymer biosynthetic process;0.00565801366346248!GO:0031497;chromatin assembly;0.00567274714010057!GO:0006091;generation of precursor metabolites and energy;0.00569252167843379!GO:0051098;regulation of binding;0.00578686640490356!GO:0030127;COPII vesicle coat;0.00581515890623459!GO:0012507;ER to Golgi transport vesicle membrane;0.00581515890623459!GO:0007040;lysosome organization and biogenesis;0.0058345670189977!GO:0048487;beta-tubulin binding;0.00586045497871266!GO:0043492;ATPase activity, coupled to movement of substances;0.00586045497871266!GO:0000287;magnesium ion binding;0.00598543970431806!GO:0006405;RNA export from nucleus;0.00619332419653497!GO:0003684;damaged DNA binding;0.00668952647372337!GO:0006334;nucleosome assembly;0.00678107027028223!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00696228385539413!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00696228385539413!GO:0007059;chromosome segregation;0.00701796917390232!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00716500649919782!GO:0007006;mitochondrial membrane organization and biogenesis;0.00721512657704799!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00721512657704799!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00777463144564064!GO:0007033;vacuole organization and biogenesis;0.00798070075360833!GO:0007088;regulation of mitosis;0.0080553621545006!GO:0031124;mRNA 3'-end processing;0.00881891046945828!GO:0030518;steroid hormone receptor signaling pathway;0.00910199656221317!GO:0004518;nuclease activity;0.00919121044305259!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0093492057797622!GO:0007017;microtubule-based process;0.00947837121059857!GO:0030433;ER-associated protein catabolic process;0.00976193037020085!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00976193037020085!GO:0006644;phospholipid metabolic process;0.0104267433012033!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0104399987253162!GO:0000922;spindle pole;0.0106141827694503!GO:0040008;regulation of growth;0.0106376733823382!GO:0006595;polyamine metabolic process;0.0106768529701069!GO:0046483;heterocycle metabolic process;0.0107000801917287!GO:0005669;transcription factor TFIID complex;0.0107089284562936!GO:0040029;regulation of gene expression, epigenetic;0.0107089284562936!GO:0046966;thyroid hormone receptor binding;0.0108590441492931!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.010937716567653!GO:0006509;membrane protein ectodomain proteolysis;0.011016571722828!GO:0033619;membrane protein proteolysis;0.011016571722828!GO:0051539;4 iron, 4 sulfur cluster binding;0.01152239281381!GO:0030496;midbody;0.0118071958145179!GO:0016272;prefoldin complex;0.0118247974751291!GO:0005832;chaperonin-containing T-complex;0.0126525899651612!GO:0000339;RNA cap binding;0.0129317291642404!GO:0007093;mitotic cell cycle checkpoint;0.0131097490560897!GO:0051287;NAD binding;0.0133606200113948!GO:0000792;heterochromatin;0.0133725107773965!GO:0006376;mRNA splice site selection;0.0136197116633495!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0136197116633495!GO:0000096;sulfur amino acid metabolic process;0.0136197116633495!GO:0008022;protein C-terminus binding;0.0136197116633495!GO:0043022;ribosome binding;0.0138703971667978!GO:0030132;clathrin coat of coated pit;0.0139102490418213!GO:0030145;manganese ion binding;0.0143801624481996!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0150786846908308!GO:0005869;dynactin complex;0.0153761601119591!GO:0006611;protein export from nucleus;0.0154596149209497!GO:0000082;G1/S transition of mitotic cell cycle;0.0161643040812793!GO:0030029;actin filament-based process;0.0168613197737348!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0170256218743622!GO:0030119;AP-type membrane coat adaptor complex;0.0170826514348186!GO:0032507;maintenance of cellular protein localization;0.017348116949942!GO:0032984;macromolecular complex disassembly;0.0174501856874481!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.017984016939487!GO:0003711;transcription elongation regulator activity;0.0182590165928821!GO:0008320;protein transmembrane transporter activity;0.0186432847613959!GO:0008139;nuclear localization sequence binding;0.0189616359852971!GO:0008097;5S rRNA binding;0.0189616359852971!GO:0000152;nuclear ubiquitin ligase complex;0.0191858601761749!GO:0030140;trans-Golgi network transport vesicle;0.0196135995274592!GO:0007021;tubulin folding;0.0196836445092867!GO:0004003;ATP-dependent DNA helicase activity;0.0198357226871455!GO:0007050;cell cycle arrest;0.0198555258040396!GO:0008092;cytoskeletal protein binding;0.0199708241891786!GO:0006378;mRNA polyadenylation;0.0201152286076828!GO:0045941;positive regulation of transcription;0.0202824951400683!GO:0006643;membrane lipid metabolic process;0.0205740587246312!GO:0016860;intramolecular oxidoreductase activity;0.0205740587246312!GO:0005876;spindle microtubule;0.0207637439149457!GO:0006897;endocytosis;0.0208964073929132!GO:0010324;membrane invagination;0.0208964073929132!GO:0005680;anaphase-promoting complex;0.0209369465332031!GO:0008180;signalosome;0.0209369465332031!GO:0005862;muscle thin filament tropomyosin;0.0211007379865853!GO:0043624;cellular protein complex disassembly;0.0214588185667237!GO:0006984;ER-nuclear signaling pathway;0.0227925919668434!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0228914994492202!GO:0030131;clathrin adaptor complex;0.0236654594706913!GO:0016584;nucleosome positioning;0.0239521913160192!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0239954028085883!GO:0003756;protein disulfide isomerase activity;0.0244041290528219!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0244041290528219!GO:0008652;amino acid biosynthetic process;0.0244604817288755!GO:0031123;RNA 3'-end processing;0.0247085481612815!GO:0006360;transcription from RNA polymerase I promoter;0.0248689931552906!GO:0033559;unsaturated fatty acid metabolic process;0.0249480331702288!GO:0006636;unsaturated fatty acid biosynthetic process;0.0249480331702288!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0251709306691224!GO:0006284;base-excision repair;0.0255280285687873!GO:0008147;structural constituent of bone;0.025844457262348!GO:0019752;carboxylic acid metabolic process;0.025919229208552!GO:0031625;ubiquitin protein ligase binding;0.0260810667838567!GO:0006220;pyrimidine nucleotide metabolic process;0.026540941802034!GO:0006275;regulation of DNA replication;0.0265593814284581!GO:0000097;sulfur amino acid biosynthetic process;0.0266116660132554!GO:0045045;secretory pathway;0.0267512889667795!GO:0007034;vacuolar transport;0.0272242883911106!GO:0008286;insulin receptor signaling pathway;0.0272488783290846!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.027426459328009!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0274749452282519!GO:0030125;clathrin vesicle coat;0.0275528262908195!GO:0030665;clathrin coated vesicle membrane;0.0275528262908195!GO:0009067;aspartate family amino acid biosynthetic process;0.0282624308553856!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0289208565432064!GO:0015002;heme-copper terminal oxidase activity;0.0289208565432064!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0289208565432064!GO:0004129;cytochrome-c oxidase activity;0.0289208565432064!GO:0006289;nucleotide-excision repair;0.0291540416540609!GO:0006082;organic acid metabolic process;0.0293226032953143!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0293893293465886!GO:0050681;androgen receptor binding;0.0296084777055437!GO:0005774;vacuolar membrane;0.0297542256945837!GO:0045893;positive regulation of transcription, DNA-dependent;0.0299021973567784!GO:0007569;cell aging;0.030039746962062!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0302320093653689!GO:0043241;protein complex disassembly;0.0302758779081993!GO:0042393;histone binding;0.0303428951604681!GO:0044262;cellular carbohydrate metabolic process;0.0306009542531026!GO:0007004;telomere maintenance via telomerase;0.0308130139880306!GO:0019783;small conjugating protein-specific protease activity;0.0308162032660234!GO:0030027;lamellipodium;0.031629451635409!GO:0051100;negative regulation of binding;0.0318932530788288!GO:0006607;NLS-bearing substrate import into nucleus;0.031939720235683!GO:0005850;eukaryotic translation initiation factor 2 complex;0.031939720235683!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0321360865046488!GO:0050662;coenzyme binding;0.0321930965082587!GO:0051540;metal cluster binding;0.0326735759299039!GO:0051536;iron-sulfur cluster binding;0.0326735759299039!GO:0046822;regulation of nucleocytoplasmic transport;0.0329414031653865!GO:0000118;histone deacetylase complex;0.0334208305944322!GO:0006144;purine base metabolic process;0.0334208305944322!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0334555907961116!GO:0051651;maintenance of cellular localization;0.0337596301982503!GO:0009112;nucleobase metabolic process;0.0343705613632436!GO:0004843;ubiquitin-specific protease activity;0.035102174059136!GO:0003923;GPI-anchor transamidase activity;0.0353704359336752!GO:0016255;attachment of GPI anchor to protein;0.0353704359336752!GO:0042765;GPI-anchor transamidase complex;0.0353704359336752!GO:0004185;serine carboxypeptidase activity;0.0354467572943573!GO:0043414;biopolymer methylation;0.0358099732024512!GO:0008144;drug binding;0.0360856822085414!GO:0004448;isocitrate dehydrogenase activity;0.036190376226061!GO:0008287;protein serine/threonine phosphatase complex;0.0366982239334672!GO:0032259;methylation;0.0380666151236216!GO:0031901;early endosome membrane;0.0380885519087427!GO:0009262;deoxyribonucleotide metabolic process;0.0381930958139454!GO:0005801;cis-Golgi network;0.0381930958139454!GO:0005784;translocon complex;0.0387111802748979!GO:0042802;identical protein binding;0.0389376199988325!GO:0006354;RNA elongation;0.039474688408151!GO:0016125;sterol metabolic process;0.0402155052095865!GO:0000178;exosome (RNase complex);0.0402768495953821!GO:0004659;prenyltransferase activity;0.0402906436744562!GO:0017166;vinculin binding;0.0405514787709168!GO:0030659;cytoplasmic vesicle membrane;0.0420029679333108!GO:0022411;cellular component disassembly;0.0420029679333108!GO:0008017;microtubule binding;0.0421062201352668!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0430405783154093!GO:0009066;aspartate family amino acid metabolic process;0.0430405783154093!GO:0032200;telomere organization and biogenesis;0.0433716674320543!GO:0000723;telomere maintenance;0.0433716674320543!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0434967897304726!GO:0004221;ubiquitin thiolesterase activity;0.0439240013986467!GO:0046128;purine ribonucleoside metabolic process;0.0443777785753242!GO:0042278;purine nucleoside metabolic process;0.0443777785753242!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0446426858738192!GO:0010257;NADH dehydrogenase complex assembly;0.0446426858738192!GO:0033108;mitochondrial respiratory chain complex assembly;0.0446426858738192!GO:0032039;integrator complex;0.0448646904936891!GO:0008536;Ran GTPase binding;0.0449904707956173!GO:0009451;RNA modification;0.0452221399713016!GO:0030522;intracellular receptor-mediated signaling pathway;0.0459953116012187!GO:0006520;amino acid metabolic process;0.0462483670004327!GO:0045792;negative regulation of cell size;0.0468515961349686!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0468725461669832!GO:0031543;peptidyl-proline dioxygenase activity;0.0472289347540491!GO:0019798;procollagen-proline dioxygenase activity;0.0476329393154128!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0477409621554865!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0477409621554865!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0478517609609964!GO:0008538;proteasome activator activity;0.0484452997210307!GO:0016018;cyclosporin A binding;0.0492902157034952!GO:0042585;germinal vesicle;0.0497127307082058 | |||
|sample_id=10558 | |sample_id=10558 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=bone | |sample_tissue=bone | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.93554694351;PRRX1,2:1.8062195104;VSX1,2:1.6637670543;ATF6:1.52995518869;ZNF384:1.47569028968;PAX4:1.39887534126;HOX{A4,D4}:1.33237052097;RBPJ:1.14326977473;NKX2-3_NKX2-5:1.13584250523;MZF1:1.13555029237;NRF1:1.04132990402;PAX3,7:1.02757414629;HIC1:1.02235352737;BREu{core}:1.02062870467;FOXA2:0.991426652081;GLI1..3:0.982243474885;bHLH_family:0.96906858386;ZNF143:0.968208917163;MEF2{A,B,C,D}:0.890267735125;NR6A1:0.857193496582;FOXP1:0.832213200175;ELK1,4_GABP{A,B1}:0.830323699127;NKX6-1,2:0.829349587128;SP1:0.82757420924;ADNP_IRX_SIX_ZHX:0.809011555346;PATZ1:0.792773005065;RREB1:0.756678479002;AHR_ARNT_ARNT2:0.731572757795;MED-1{core}:0.710913505036;EGR1..3:0.708420651526;TFAP2B:0.707987599561;NKX2-1,4:0.706773533902;HBP1_HMGB_SSRP1_UBTF:0.703348021899;PRDM1:0.693134673267;TOPORS:0.68779075494;NFY{A,B,C}:0.685945122605;TFDP1:0.677981357488;LEF1_TCF7_TCF7L1,2:0.663605812412;SOX17:0.647987006204;MAFB:0.632854647707;CDX1,2,4:0.617176532634;LHX3,4:0.611674001693;HMX1:0.594027400922;TLX1..3_NFIC{dimer}:0.584429774993;MYBL2:0.580703427392;E2F1..5:0.560708790449;HES1:0.555241688515;ATF5_CREB3:0.527761467886;ZNF238:0.519995689455;PITX1..3:0.517741467353;GFI1:0.517151500676;YY1:0.507726563181;ZNF423:0.496019420351;EN1,2:0.49522211223;ESR1:0.490334581152;GTF2A1,2:0.489723266433;GCM1,2:0.440182248142;SRF:0.436774813107;SOX{8,9,10}:0.434134432033;ZIC1..3:0.411059152523;ATF4:0.382769392291;TFAP2{A,C}:0.378533732249;GTF2I:0.340018840055;BPTF:0.333889903167;RUNX1..3:0.327849821794;IKZF2:0.325561786783;RFX1:0.318659984951;NKX3-1:0.310075903811;PAX8:0.301588578262;AIRE:0.289578715386;MAZ:0.287017214034;SREBF1,2:0.229730017534;FOX{F1,F2,J1}:0.221671082599;ARID5B:0.21489599857;GFI1B:0.211783510267;SPZ1:0.208614051209;PAX2:0.204386095264;PDX1:0.193815303317;PBX1:0.190233690785;SOX5:0.174987337773;NFATC1..3:0.166234068934;TBX4,5:0.148524673435;KLF4:0.147675322267;TEAD1:0.142388949982;TEF:0.14097305209;XCPE1{core}:0.14097049696;HIF1A:0.132110653698;HOX{A6,A7,B6,B7}:0.130691059153;HAND1,2:0.130018154224;OCT4_SOX2{dimer}:0.126394999975;IKZF1:0.124308521653;NFE2L2:0.118561486912;HNF1A:0.0986411726156;TGIF1:0.0984034032422;CUX2:0.0846623928553;NANOG{mouse}:0.0744075300873;MTE{core}:0.0721846464364;GATA4:0.0630615873875;EVI1:0.0578491590556;RORA:0.0506230811699;REST:0.0478811229549;ZBTB6:0.0476358378786;DMAP1_NCOR{1,2}_SMARC:0.0363392723561;MYFfamily:0.0245547071271;MYB:0.00885822688621;FOX{D1,D2}:0.00310111891389;AR:-0.0328755803085;TBP:-0.0391634990994;MTF1:-0.0564765738205;TP53:-0.0585039129201;XBP1:-0.0618633305295;POU1F1:-0.0685931520504;SMAD1..7,9:-0.0713238508428;ZFP161:-0.0884529798726;STAT1,3:-0.111869563001;NFIX:-0.130829982008;NR5A1,2:-0.134290400945;EBF1:-0.134896662176;PAX5:-0.13717078903;ONECUT1,2:-0.137715776357;CDC5L:-0.140646616531;NR3C1:-0.141371202362;HLF:-0.141394224387;POU3F1..4:-0.158120753427;HOX{A5,B5}:-0.164450436159;POU6F1:-0.189867625639;CREB1:-0.197094654954;POU5F1:-0.199349087664;FOX{I1,J2}:-0.203665898388;FOXM1:-0.20544817551;CRX:-0.212256692905;NR1H4:-0.243731849954;NFIL3:-0.277584842171;PPARG:-0.279647407936;FOSL2:-0.279979091835;JUN:-0.283481120601;DBP:-0.286988624113;ZNF148:-0.298537852789;TFCP2:-0.318981182898;UFEwm:-0.358499266141;SOX2:-0.363721859153;ELF1,2,4:-0.364655808758;ESRRA:-0.369525556251;CEBPA,B_DDIT3:-0.374413562612;SNAI1..3:-0.375545331658;HNF4A_NR2F1,2:-0.382185012074;NHLH1,2:-0.389112466458;RFX2..5_RFXANK_RFXAP:-0.389746142432;IRF7:-0.391703500171;HMGA1,2:-0.391940882072;FOXL1:-0.40013688583;NKX2-2,8:-0.421718166823;SPI1:-0.434824462565;NFE2:-0.488304821486;FOS_FOS{B,L1}_JUN{B,D}:-0.488334006473;FOXD3:-0.496379816909;FOXN1:-0.498570901619;HSF1,2:-0.511718820564;SPIB:-0.512289179343;FOXQ1:-0.524710898739;NANOG:-0.535192727508;BACH2:-0.537575933789;GATA6:-0.542265742289;T:-0.574244104118;RXR{A,B,G}:-0.576802786223;STAT5{A,B}:-0.581776520683;NFKB1_REL_RELA:-0.583698344572;NKX3-2:-0.583922240116;TAL1_TCF{3,4,12}:-0.597721462596;IRF1,2:-0.626398771298;ALX4:-0.628983007016;PAX6:-0.66347604035;PAX1,9:-0.664829061889;TFAP4:-0.676486183868;ATF2:-0.690717008931;FOXP3:-0.740174882273;NFE2L1:-0.788831549163;ZBTB16:-0.788993667379;ZEB1:-0.794176299099;ETS1,2:-0.8162035424;FOXO1,3,4:-0.824648400361;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.896426435893;ALX1:-0.95028705402;LMO2:-0.991058896487;GZF1:-1.02358543023;EP300:-1.02998698234;POU2F1..3:-1.04994789243;STAT2,4,6:-1.06695346357;RXRA_VDR{dimer}:-1.0827888511;HOXA9_MEIS1:-1.28226948195;TLX2:-1.34615685268;MYOD1:-1.73187512838 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.93554694351;PRRX1,2:1.8062195104;VSX1,2:1.6637670543;ATF6:1.52995518869;ZNF384:1.47569028968;PAX4:1.39887534126;HOX{A4,D4}:1.33237052097;RBPJ:1.14326977473;NKX2-3_NKX2-5:1.13584250523;MZF1:1.13555029237;NRF1:1.04132990402;PAX3,7:1.02757414629;HIC1:1.02235352737;BREu{core}:1.02062870467;FOXA2:0.991426652081;GLI1..3:0.982243474885;bHLH_family:0.96906858386;ZNF143:0.968208917163;MEF2{A,B,C,D}:0.890267735125;NR6A1:0.857193496582;FOXP1:0.832213200175;ELK1,4_GABP{A,B1}:0.830323699127;NKX6-1,2:0.829349587128;SP1:0.82757420924;ADNP_IRX_SIX_ZHX:0.809011555346;PATZ1:0.792773005065;RREB1:0.756678479002;AHR_ARNT_ARNT2:0.731572757795;MED-1{core}:0.710913505036;EGR1..3:0.708420651526;TFAP2B:0.707987599561;NKX2-1,4:0.706773533902;HBP1_HMGB_SSRP1_UBTF:0.703348021899;PRDM1:0.693134673267;TOPORS:0.68779075494;NFY{A,B,C}:0.685945122605;TFDP1:0.677981357488;LEF1_TCF7_TCF7L1,2:0.663605812412;SOX17:0.647987006204;MAFB:0.632854647707;CDX1,2,4:0.617176532634;LHX3,4:0.611674001693;HMX1:0.594027400922;TLX1..3_NFIC{dimer}:0.584429774993;MYBL2:0.580703427392;E2F1..5:0.560708790449;HES1:0.555241688515;ATF5_CREB3:0.527761467886;ZNF238:0.519995689455;PITX1..3:0.517741467353;GFI1:0.517151500676;YY1:0.507726563181;ZNF423:0.496019420351;EN1,2:0.49522211223;ESR1:0.490334581152;GTF2A1,2:0.489723266433;GCM1,2:0.440182248142;SRF:0.436774813107;SOX{8,9,10}:0.434134432033;ZIC1..3:0.411059152523;ATF4:0.382769392291;TFAP2{A,C}:0.378533732249;GTF2I:0.340018840055;BPTF:0.333889903167;RUNX1..3:0.327849821794;IKZF2:0.325561786783;RFX1:0.318659984951;NKX3-1:0.310075903811;PAX8:0.301588578262;AIRE:0.289578715386;MAZ:0.287017214034;SREBF1,2:0.229730017534;FOX{F1,F2,J1}:0.221671082599;ARID5B:0.21489599857;GFI1B:0.211783510267;SPZ1:0.208614051209;PAX2:0.204386095264;PDX1:0.193815303317;PBX1:0.190233690785;SOX5:0.174987337773;NFATC1..3:0.166234068934;TBX4,5:0.148524673435;KLF4:0.147675322267;TEAD1:0.142388949982;TEF:0.14097305209;XCPE1{core}:0.14097049696;HIF1A:0.132110653698;HOX{A6,A7,B6,B7}:0.130691059153;HAND1,2:0.130018154224;OCT4_SOX2{dimer}:0.126394999975;IKZF1:0.124308521653;NFE2L2:0.118561486912;HNF1A:0.0986411726156;TGIF1:0.0984034032422;CUX2:0.0846623928553;NANOG{mouse}:0.0744075300873;MTE{core}:0.0721846464364;GATA4:0.0630615873875;EVI1:0.0578491590556;RORA:0.0506230811699;REST:0.0478811229549;ZBTB6:0.0476358378786;DMAP1_NCOR{1,2}_SMARC:0.0363392723561;MYFfamily:0.0245547071271;MYB:0.00885822688621;FOX{D1,D2}:0.00310111891389;AR:-0.0328755803085;TBP:-0.0391634990994;MTF1:-0.0564765738205;TP53:-0.0585039129201;XBP1:-0.0618633305295;POU1F1:-0.0685931520504;SMAD1..7,9:-0.0713238508428;ZFP161:-0.0884529798726;STAT1,3:-0.111869563001;NFIX:-0.130829982008;NR5A1,2:-0.134290400945;EBF1:-0.134896662176;PAX5:-0.13717078903;ONECUT1,2:-0.137715776357;CDC5L:-0.140646616531;NR3C1:-0.141371202362;HLF:-0.141394224387;POU3F1..4:-0.158120753427;HOX{A5,B5}:-0.164450436159;POU6F1:-0.189867625639;CREB1:-0.197094654954;POU5F1:-0.199349087664;FOX{I1,J2}:-0.203665898388;FOXM1:-0.20544817551;CRX:-0.212256692905;NR1H4:-0.243731849954;NFIL3:-0.277584842171;PPARG:-0.279647407936;FOSL2:-0.279979091835;JUN:-0.283481120601;DBP:-0.286988624113;ZNF148:-0.298537852789;TFCP2:-0.318981182898;UFEwm:-0.358499266141;SOX2:-0.363721859153;ELF1,2,4:-0.364655808758;ESRRA:-0.369525556251;CEBPA,B_DDIT3:-0.374413562612;SNAI1..3:-0.375545331658;HNF4A_NR2F1,2:-0.382185012074;NHLH1,2:-0.389112466458;RFX2..5_RFXANK_RFXAP:-0.389746142432;IRF7:-0.391703500171;HMGA1,2:-0.391940882072;FOXL1:-0.40013688583;NKX2-2,8:-0.421718166823;SPI1:-0.434824462565;NFE2:-0.488304821486;FOS_FOS{B,L1}_JUN{B,D}:-0.488334006473;FOXD3:-0.496379816909;FOXN1:-0.498570901619;HSF1,2:-0.511718820564;SPIB:-0.512289179343;FOXQ1:-0.524710898739;NANOG:-0.535192727508;BACH2:-0.537575933789;GATA6:-0.542265742289;T:-0.574244104118;RXR{A,B,G}:-0.576802786223;STAT5{A,B}:-0.581776520683;NFKB1_REL_RELA:-0.583698344572;NKX3-2:-0.583922240116;TAL1_TCF{3,4,12}:-0.597721462596;IRF1,2:-0.626398771298;ALX4:-0.628983007016;PAX6:-0.66347604035;PAX1,9:-0.664829061889;TFAP4:-0.676486183868;ATF2:-0.690717008931;FOXP3:-0.740174882273;NFE2L1:-0.788831549163;ZBTB16:-0.788993667379;ZEB1:-0.794176299099;ETS1,2:-0.8162035424;FOXO1,3,4:-0.824648400361;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.896426435893;ALX1:-0.95028705402;LMO2:-0.991058896487;GZF1:-1.02358543023;EP300:-1.02998698234;POU2F1..3:-1.04994789243;STAT2,4,6:-1.06695346357;RXRA_VDR{dimer}:-1.0827888511;HOXA9_MEIS1:-1.28226948195;TLX2:-1.34615685268;MYOD1:-1.73187512838 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10558-107I9;search_select_hide=table117:FF:10558-107I9 | |||
}} | }} | ||
Latest revision as of 14:29, 3 June 2020
| Name: | osteosarcoma cell line:HS-Os-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11290 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | |||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11290
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11290
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.169 |
| 10 | 10 | 0.0854 |
| 100 | 100 | 0.851 |
| 101 | 101 | 0.693 |
| 102 | 102 | 0.789 |
| 103 | 103 | 0.00889 |
| 104 | 104 | 0.302 |
| 105 | 105 | 0.0625 |
| 106 | 106 | 0.00355 |
| 107 | 107 | 0.0828 |
| 108 | 108 | 0.73 |
| 109 | 109 | 0.11 |
| 11 | 11 | 0.116 |
| 110 | 110 | 0.178 |
| 111 | 111 | 0.43 |
| 112 | 112 | 0.0636 |
| 113 | 113 | 0.58 |
| 114 | 114 | 0.0234 |
| 115 | 115 | 0.452 |
| 116 | 116 | 0.521 |
| 117 | 117 | 0.0646 |
| 118 | 118 | 0.271 |
| 119 | 119 | 0.192 |
| 12 | 12 | 0.881 |
| 120 | 120 | 0.611 |
| 121 | 121 | 0.813 |
| 122 | 122 | 0.936 |
| 123 | 123 | 0.32 |
| 124 | 124 | 0.404 |
| 125 | 125 | 0.104 |
| 126 | 126 | 0.22 |
| 127 | 127 | 0.19 |
| 128 | 128 | 0.014 |
| 129 | 129 | 0.261 |
| 13 | 13 | 0.343 |
| 130 | 130 | 0.0633 |
| 131 | 131 | 0.0644 |
| 132 | 132 | 0.773 |
| 133 | 133 | 0.693 |
| 134 | 134 | 0.563 |
| 135 | 135 | 0.0574 |
| 136 | 136 | 0.896 |
| 137 | 137 | 0.144 |
| 138 | 138 | 0.222 |
| 139 | 139 | 3.01561e-4 |
| 14 | 14 | 0.357 |
| 140 | 140 | 0.537 |
| 141 | 141 | 0.362 |
| 142 | 142 | 0.834 |
| 143 | 143 | 0.0755 |
| 144 | 144 | 0.798 |
| 145 | 145 | 0.0194 |
| 146 | 146 | 0.703 |
| 147 | 147 | 0.955 |
| 148 | 148 | 0.0116 |
| 149 | 149 | 0.0488 |
| 15 | 15 | 0.168 |
| 150 | 150 | 0.436 |
| 151 | 151 | 0.267 |
| 152 | 152 | 0.265 |
| 153 | 153 | 0.145 |
| 154 | 154 | 0.722 |
| 155 | 155 | 0.0834 |
| 156 | 156 | 0.195 |
| 157 | 157 | 0.75 |
| 158 | 158 | 0.883 |
| 159 | 159 | 0.135 |
| 16 | 16 | 0.123 |
| 160 | 160 | 0.0551 |
| 161 | 161 | 0.274 |
| 162 | 162 | 0.811 |
| 163 | 163 | 0.199 |
| 164 | 164 | 0.726 |
| 165 | 165 | 0.385 |
| 166 | 166 | 0.633 |
| 167 | 167 | 0.854 |
| 168 | 168 | 0.545 |
| 169 | 169 | 0.0188 |
| 17 | 17 | 0.3 |
| 18 | 18 | 0.122 |
| 19 | 19 | 0.248 |
| 2 | 2 | 0.181 |
| 20 | 20 | 0.515 |
| 21 | 21 | 0.824 |
| 22 | 22 | 0.296 |
| 23 | 23 | 0.0444 |
| 24 | 24 | 0.979 |
| 25 | 25 | 0.516 |
| 26 | 26 | 0.118 |
| 27 | 27 | 0.0655 |
| 28 | 28 | 0.976 |
| 29 | 29 | 0.42 |
| 3 | 3 | 0.0713 |
| 30 | 30 | 0.919 |
| 31 | 31 | 0.613 |
| 32 | 32 | 0.351 |
| 33 | 33 | 0.234 |
| 34 | 34 | 0.59 |
| 35 | 35 | 0.205 |
| 36 | 36 | 0.13 |
| 37 | 37 | 0.388 |
| 38 | 38 | 0.379 |
| 39 | 39 | 0.814 |
| 4 | 4 | 0.81 |
| 40 | 40 | 0.196 |
| 41 | 41 | 0.0801 |
| 42 | 42 | 0.215 |
| 43 | 43 | 0.135 |
| 44 | 44 | 0.0141 |
| 45 | 45 | 0.416 |
| 46 | 46 | 0.0498 |
| 47 | 47 | 0.246 |
| 48 | 48 | 0.375 |
| 49 | 49 | 0.232 |
| 5 | 5 | 0.209 |
| 50 | 50 | 0.673 |
| 51 | 51 | 0.534 |
| 52 | 52 | 0.229 |
| 53 | 53 | 0.899 |
| 54 | 54 | 0.348 |
| 55 | 55 | 0.0575 |
| 56 | 56 | 0.342 |
| 57 | 57 | 0.524 |
| 58 | 58 | 0.166 |
| 59 | 59 | 0.0238 |
| 6 | 6 | 0.997 |
| 60 | 60 | 0.086 |
| 61 | 61 | 0.381 |
| 62 | 62 | 0.0717 |
| 63 | 63 | 0.274 |
| 64 | 64 | 0.244 |
| 65 | 65 | 0.074 |
| 66 | 66 | 0.421 |
| 67 | 67 | 0.807 |
| 68 | 68 | 0.832 |
| 69 | 69 | 0.904 |
| 7 | 7 | 0.424 |
| 70 | 70 | 0.128 |
| 71 | 71 | 0.0643 |
| 72 | 72 | 0.159 |
| 73 | 73 | 0.206 |
| 74 | 74 | 0.255 |
| 75 | 75 | 0.126 |
| 76 | 76 | 0.662 |
| 77 | 77 | 0.232 |
| 78 | 78 | 0.562 |
| 79 | 79 | 0.778 |
| 8 | 8 | 0.18 |
| 80 | 80 | 0.851 |
| 81 | 81 | 0.577 |
| 82 | 82 | 0.109 |
| 83 | 83 | 0.242 |
| 84 | 84 | 0.978 |
| 85 | 85 | 0.0111 |
| 86 | 86 | 0.478 |
| 87 | 87 | 0.151 |
| 88 | 88 | 0.904 |
| 89 | 89 | 0.187 |
| 9 | 9 | 0.308 |
| 90 | 90 | 0.506 |
| 91 | 91 | 0.182 |
| 92 | 92 | 0.127 |
| 93 | 93 | 0.756 |
| 94 | 94 | 0.0315 |
| 95 | 95 | 0.307 |
| 96 | 96 | 0.213 |
| 97 | 97 | 0.827 |
| 98 | 98 | 0.522 |
| 99 | 99 | 0.291 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11290
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100407 osteosarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0002204 (musculoskeletal system)
0001434 (skeletal system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100385 (bone cancer cell line sample)
0100407 (osteosarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
