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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000002,UBERON:0005795,UBERON:0000995,UBERON:0000483,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0006598,UBERON:0006955,UBERON:0002532,UBERON:0004801,UBERON:0003100,UBERON:0000474,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00005178
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0002371,CL:0000004,CL:0000255,CL:0002535
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005178
|accession_numbers=CAGE;DRX007829;DRR008701;DRZ000126;DRZ001511;DRZ011476;DRZ012861
|accession_numbers_RNASeq=RNA-Seq;DRX057130;DRR062889;DRZ007965
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0000483,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0006955,UBERON:0004801,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002535
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:4362
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:4362
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101967
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:182545234..182545252,-!p1@NEUROD1!2.75!558.28!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!2.72!518.73!INSM1;;chrX:25034067..25034088,-!p1@ARX!2.38!236.56!ARX;;chr8:41508327..41508355,-!p1@NKX6-3!2.34!217.92!NKX6-3;;chr7:73038839..73038862,-!p1@MLXIPL!2.29!193.99!MLXIPL;;chr4:57547454..57547469,-!p1@HOPX!2.22!165.02!HOPX;;chr6:117198400..117198441,+!p1@RFX6!2.12!129.75!RFX6;;chr13:28494130..28494168,+!p1@PDX1!2.02!104.30!PDX1;;chr13:72441315..72441454,-!p1@DACH1!1.99!189.20!DACH1;;chr11:31839488..31839515,-!p3@PAX6!1.99!95.99!PAX6;;chr5:50679228..50679288,+!p1@ISL1!1.95!88.43!ISL1;;chr7:127258139..127258173,-!p@chr7:127258139..127258173,-!1.95!87.67!PAX4;;chr18:55102628..55102646,+!p2@ONECUT2!1.92!81.88!ONECUT2;;chr8:76319876..76319926,+!p1@HNF4G!1.87!73.82!HNF4G;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.52!HNF4A;;chr11:31832658..31832681,-!p1@PAX6!1.83!66.01!PAX6;;chr18:55102598..55102623,+!p1@ONECUT2!1.80!61.47!ONECUT2;;chr20:22564895..22564910,-!p1@FOXA2!1.78!58.95!FOXA2;;chr2:219849897..219849928,-!p2@FEV!1.78!58.70!FEV;;chr1:214161272..214161322,+!p1@PROX1!1.75!76.84!PROX1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.61!39.55!SEBOX;;chr13:72441506..72441562,-!p3@DACH1!1.59!38.29!DACH1;;chr11:16419037..16419064,-!p3@SOX6!1.59!37.54!SOX6;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.51!ELF3;;chr7:156803329..156803362,-!p1@MNX1!1.54!34.01!MNX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.53!37.54!TFAP2A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.53!33.26!SEBOX;;chr8:53166899..53166914,-!p3@ST18!1.53!33.00!ST18;;chr8:53162037..53162058,-!p5@ST18!1.52!32.25!ST18;;chr16:85932760..85932775,+!p1@IRF8!1.51!31.24!IRF8;;chr11:61520075..61520136,+!p1@C11orf9!1.49!61.98!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.38!TFAP2A;;chr1:10754477..10754517,-!p1@CASZ1!1.49!48.62!CASZ1;;chr3:157824202..157824211,-!p3@SHOX2!1.49!30.23!SHOX2;;chr11:31832610..31832639,-!p5@PAX6!1.49!29.73!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.46!27.96!NPAS3;;chr13:72441074..72441172,-!p2@DACH1!1.43!25.95!DACH1;;chr12:103351444..103351461,+!p1@ASCL1!1.39!23.68!ASCL1;;chr7:127258190..127258201,-!p@chr7:127258190..127258201,-!1.37!22.67!PAX4;;chr7:127258120..127258138,-!p@chr7:127258120..127258138,-!1.37!22.42!PAX4;;chr11:31832581..31832601,-!p7@PAX6!1.37!22.42!PAX6;;chr20:22565370..22565388,-!p2@FOXA2!1.36!21.67!FOXA2;;chr11:2292226..2292270,-!p1@ASCL2!1.35!21.16!ASCL2;;chr8:41508303..41508308,-!p2@NKX6-3!1.34!20.66!NKX6-3;;chr2:239148671..239148686,-!p1@HES6!1.31!70.29!HES6;;chr17:53342311..53342400,+!p1@HLF!1.30!21.92!HLF;;chr1:27240455..27240474,-!p1@NR0B2!1.30!19.15!NR0B2;;chr2:242556880..242556899,-!p5@THAP4!1.30!19.15!THAP4;;chr11:31832807..31832823,-!p4@PAX6!1.30!18.89!PAX6;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.91!IRF6;;chr8:11561684..11561751,+!p1@GATA4!1.28!17.89!GATA4;;chr13:41593493..41593506,-!p8@ELF1!1.27!17.64!ELF1;;chr6:19837592..19837621,+!p1@ID4!1.26!103.54!ID4;;chr13:28494109..28494122,+!p2@PDX1!1.26!17.13!PDX1;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.63!HOXA10;;chr4:149363494..149363543,-!p1@NR3C2!1.24!16.38!NR3C2;;chr1:201979703..201979721,+!p2@ELF3!1.23!15.87!ELF3;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!15.87!MLXIPL;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.11!PAX6;;chr13:28543285..28543314,-!p2@CDX2!1.18!14.11!CDX2;;chr5:50681985..50682031,+!p2@ISL1!1.17!13.86!ISL1;;chr1:165325006..165325012,-!p2@LMX1A!1.17!13.86!LMX1A;;chr11:31839453..31839462,-!p9@PAX6!1.16!13.35!PAX6;;chr13:28543431..28543487,-!p1@CDX2!1.15!13.10!CDX2;;chr17:46622440..46622477,-!p5@HOXB2!1.14!14.36!HOXB2;;chr2:242556900..242556916,-!p6@THAP4!1.13!12.60!THAP4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.13!12.60!ZBED1;;chr18:56940611..56940660,-!p1@RAX!1.13!12.34!RAX;;chr9:3525867..3525902,-!p3@RFX3!1.12!41.82!RFX3;;chr2:176994408..176994492,+!p1@HOXD8!1.12!12.09!HOXD8;;chr7:27219833..27219845,-!p7@HOXA10!1.12!12.09!HOXA10;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.84!EBF3;;chr20:39317868..39317884,-!p1@MAFB!1.10!137.56!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.75!EPAS1;;chr11:31832687..31832704,-!p6@PAX6!1.10!11.59!PAX6;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.47!EBF1;;chr1:41827095..41827155,+!p1@FOXO6!1.08!14.86!FOXO6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.08!11.09!POU3F3;;chr4:149363475..149363492,-!p2@NR3C2!1.08!11.09!NR3C2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.83!HOXC5;;chr3:157824437..157824459,-!p5@SHOX2!1.06!10.58!SHOX2;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.33!HSF4;;chr2:182545282..182545294,-!p2@NEUROD1!1.04!10.08!NEUROD1;;chr13:37494275..37494304,-!p2@SMAD9!1.04!10.08!SMAD9;;chr5:124084493..124084524,-!p2@ZNF608!1.03!21.92!ZNF608;;chr2:182545296..182545307,-!p3@NEUROD1!1.03!9.83!NEUROD1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.02!20.41!ZNF395;;chr6:117198376..117198383,+!p2@RFX6!1.02!9.57!RFX6;;chr7:149471046..149471070,-!p4@ZNF467!1.02!9.57!ZNF467;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.57!MLLT3;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.01!27.46!ZKSCAN1;;chr2:45168834..45168847,+!p2@SIX3!1.01!9.32!SIX3;;chr1:214161328..214161348,+!p2@PROX1!1.01!9.32!PROX1;;chr20:62795834..62795878,+!p2@MYT1!1.01!9.32!MYT1;;chr17:46688334..46688385,-!p1@HOXB7!1.00!13.10!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!1.00!9.07!HOXB13;;chr1:2985760..2985774,+!p1@PRDM16!1.00!9.07!PRDM16;;chr5:158524625..158524669,-!p6@EBF1!1.00!9.07!EBF1;;chr13:37494365..37494381,-!p1@SMAD9!0.99!15.37!SMAD9;;chr18:72922743..72922761,+!p3@TSHZ1!0.98!28.97!TSHZ1;;chr9:3525910..3525955,-!p4@RFX3!0.98!26.20!RFX3;;chr6:144289132..144289134,-!p3@PLAGL1!0.98!20.15!PLAGL1;;chr14:33408072..33408114,+!p2@NPAS3!0.98!10.08!NPAS3;;chr11:31827535..31827565,-!p11@PAX6!0.98!8.57!PAX6;;chr9:3525727..3525828,-!p2@RFX3!0.97!21.92!RFX3;;chr3:157823517..157823562,-!p1@SHOX2!0.97!9.07!SHOX2;;chr2:219849805..219849819,-!p3@FEV!0.97!8.31!FEV;;chr13:37494391..37494406,-!p5@SMAD9!0.97!8.31!SMAD9;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.29!NR2F1;;chrX:84499081..84499115,+!p2@ZNF711!0.96!12.09!ZNF711;;chr11:2291814..2291825,-!p2@ASCL2!0.96!8.06!ASCL2;;chr11:63684602..63684664,-!p1@RCOR2!0.95!15.87!RCOR2;;chr12:54393880..54393962,+!p1@HOXC9!0.94!7.81!HOXC9;;chr20:21378152..21378169,-!p1@NKX2-4!0.94!7.81!NKX2-4;;chr2:162272889..162272915,+!p2@TBR1!0.94!7.81!TBR1;;chr8:60031762..60031803,-!p3@TOX!0.93!11.09!TOX;;chr15:41913690..41913753,+!p2@MGA!0.92!18.14!MGA;;chr17:7197911..7197964,-!p1@YBX2!0.92!7.31!YBX2;;chr1:214161358..214161377,+!p3@PROX1!0.92!7.31!PROX1;;chr20:62795799..62795819,+!p1@MYT1!0.92!7.31!MYT1;;chr2:166326200..166326216,+!p1@CSRNP3!0.91!10.58!CSRNP3;;chr8:128747757..128747800,+!p7@MYC!0.91!9.83!MYC;;chr6:117198458..117198464,+!p4@RFX6!0.91!7.05!RFX6;;chr7:27219849..27219867,-!p6@HOXA10!0.91!7.05!HOXA10;;chr7:96634850..96634874,+!p3@DLX6!0.91!7.05!DLX6;;chr8:53161967..53161974,-!p11@ST18!0.91!7.05!ST18;;chr20:22565185..22565223,-!p3@FOXA2!0.91!7.05!FOXA2;;chr3:52001448..52001478,-!p2@PCBP4!0.90!100.77!PCBP4;;chr20:50159198..50159299,-!p1@NFATC2!0.90!10.33!NFATC2;;chr3:18486354..18486377,-!p2@SATB1!0.90!8.82!SATB1;;chr3:157824156..157824164,-!p4@SHOX2!0.89!6.80!SHOX2;;chr1:10856694..10856715,-!p3@CASZ1!0.89!6.80!CASZ1;;chr12:85673977..85674015,+!p1@ALX1!0.89!6.80!ALX1;;chr16:67198683..67198698,+!p2@HSF4!0.89!6.80!HSF4;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!9.07!DNMT3A;;chr18:55102806..55102847,+!p3@ONECUT2!0.88!6.55!ONECUT2;;chr1:10856639..10856662,-!p2@CASZ1!0.88!6.55!CASZ1;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.55!CASZ1;;chr1:214161619..214161629,+!p5@PROX1!0.88!6.55!PROX1;;chr14:33403648..33403710,+!p3@NPAS3!0.88!6.55!NPAS3;;chr7:27135591..27135658,-!p1@HOXA1!0.87!12.85!HOXA1;;chr6:144385698..144385742,-!p2@PLAGL1!0.87!7.81!PLAGL1;;chr11:31832549..31832562,-!p10@PAX6!0.86!6.30!PAX6;;chr13:37494248..37494260,-!p3@SMAD9!0.86!6.30!SMAD9;;chr5:92918894..92918912,+!p2@NR2F1!0.85!20.91!NR2F1;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.57!ZNF711;;chrX:30327504..30327509,-!p1@NR0B1!0.85!6.05!NR0B1;;chr2:45236540..45236577,-!p1@SIX2!0.85!6.05!SIX2;;chr16:67198633..67198671,+!p1@HSF4!0.85!6.05!HSF4;;chr17:74137321..74137337,-!p1@FOXJ1!0.85!6.05!FOXJ1;;chr20:62795951..62795965,+!p3@MYT1!0.85!6.05!MYT1;;chr20:51588873..51588953,+!p1@TSHZ2!0.84!8.06!TSHZ2;;chr1:165325939..165325958,-!p1@LMX1A!0.83!5.79!LMX1A;;chr2:219850049..219850060,-!p8@FEV!0.83!5.79!FEV;;chr7:73038889..73038905,-!p3@MLXIPL!0.83!5.79!MLXIPL;;chr8:93107451..93107468,-!p2@RUNX1T1!0.83!5.79!RUNX1T1;;chr9:128509663..128509715,+!p1@PBX3!0.82!20.15!PBX3;;chr3:40547564..40547616,+!p1@ZNF620!0.82!8.06!ZNF620;;chr12:24103844..24103880,-!p3@SOX5!0.82!5.54!SOX5;;chr6:28411241..28411284,-!p1@ZSCAN23!0.80!17.89!ZSCAN23;;chr17:46806098..46806118,-!p3@HOXB13!0.80!5.29!HOXB13;;chr15:80696703..80696754,+!p1@ARNT2!0.79!7.05!ARNT2;;chr7:14028488..14028516,-!p2@ETV1!0.79!5.79!ETV1;;chr2:200323414..200323455,-!p1@SATB2!0.78!11.34!SATB2;;chr2:219849644..219849655,-!p7@FEV!0.78!5.04!FEV;;chr2:45168997..45169020,+!p4@SIX3!0.78!5.04!SIX3;;chr13:72440434..72440479,-!p6@DACH1!0.78!5.04!DACH1;;chr17:38020392..38020477,-!p1@IKZF3!0.78!5.04!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!0.76!33.51!ELF1;;chr12:121416340..121416360,+!p1@HNF1A!0.76!4.79!HNF1A;;chr12:24102576..24102623,-!p2@SOX5!0.76!4.79!SOX5;;chr2:219849784..219849798,-!p5@FEV!0.76!4.79!FEV;;chr19:48076391..48076408,-!p@chr19:48076391..48076408,-!0.76!4.79!ZNF541;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!0.76!4.79!ZNF663;;chr17:46806035..46806059,-!p2@HOXB13!0.76!4.79!HOXB13;;chr17:46806419..46806438,-!p4@HOXB13!0.76!4.79!HOXB13;;chr5:158524563..158524578,-!p11@EBF1!0.76!4.79!EBF1;;chr8:93107696..93107716,-!p8@RUNX1T1!0.76!4.79!RUNX1T1;;chr19:50432453..50432468,+!p1@ATF5!0.75!288.71!ATF5;;chr6:144329384..144329405,-!p1@PLAGL1!0.75!59.71!PLAGL1;;chr8:128748308..128748324,+!p2@MYC!0.74!138.56!MYC;;chr7:149470641..149470694,-!p1@ZNF467!0.74!22.67!ZNF467;;chr7:6655225..6655279,+!p1@ENST00000457543!0.74!7.05!ZNF853;;chr15:37392576..37392589,-!p12@MEIS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|expression_enrichment_score=chr2:182545234..182545252,-!p1@NEUROD1!2.75!558.28!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!2.72!518.73!INSM1;;chrX:25034067..25034088,-!p1@ARX!2.38!236.56!ARX;;chr8:41508327..41508355,-!p1@NKX6-3!2.34!217.92!NKX6-3;;chr7:73038839..73038862,-!p1@MLXIPL!2.29!193.99!MLXIPL;;chr4:57547454..57547469,-!p1@HOPX!2.22!165.02!HOPX;;chr6:117198400..117198441,+!p1@RFX6!2.12!129.75!RFX6;;chr13:28494130..28494168,+!p1@PDX1!2.02!104.30!PDX1;;chr13:72441315..72441454,-!p1@DACH1!1.99!189.20!DACH1;;chr11:31839488..31839515,-!p3@PAX6!1.99!95.99!PAX6;;chr5:50679228..50679288,+!p1@ISL1!1.95!88.43!ISL1;;chr7:127258139..127258173,-!p@chr7:127258139..127258173,-!1.95!87.67!PAX4;;chr18:55102628..55102646,+!p2@ONECUT2!1.92!81.88!ONECUT2;;chr8:76319876..76319926,+!p1@HNF4G!1.87!73.82!HNF4G;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.52!HNF4A;;chr11:31832658..31832681,-!p1@PAX6!1.83!66.01!PAX6;;chr18:55102598..55102623,+!p1@ONECUT2!1.80!61.47!ONECUT2;;chr20:22564895..22564910,-!p1@FOXA2!1.78!58.95!FOXA2;;chr2:219849897..219849928,-!p2@FEV!1.78!58.70!FEV;;chr1:214161272..214161322,+!p1@PROX1!1.75!76.84!PROX1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.61!39.55!SEBOX;;chr13:72441506..72441562,-!p3@DACH1!1.59!38.29!DACH1;;chr11:16419037..16419064,-!p3@SOX6!1.59!37.54!SOX6;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.51!ELF3;;chr7:156803329..156803362,-!p1@MNX1!1.54!34.01!MNX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.53!37.54!TFAP2A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.53!33.26!SEBOX;;chr8:53166899..53166914,-!p3@ST18!1.53!33.00!ST18;;chr8:53162037..53162058,-!p5@ST18!1.52!32.25!ST18;;chr16:85932760..85932775,+!p1@IRF8!1.51!31.24!IRF8;;chr11:61520075..61520136,+!p1@C11orf9!1.49!61.98!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.38!TFAP2A;;chr1:10754477..10754517,-!p1@CASZ1!1.49!48.62!CASZ1;;chr3:157824202..157824211,-!p3@SHOX2!1.49!30.23!SHOX2;;chr11:31832610..31832639,-!p5@PAX6!1.49!29.73!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.46!27.96!NPAS3;;chr13:72441074..72441172,-!p2@DACH1!1.43!25.95!DACH1;;chr12:103351444..103351461,+!p1@ASCL1!1.39!23.68!ASCL1;;chr7:127258190..127258201,-!p@chr7:127258190..127258201,-!1.37!22.67!PAX4;;chr7:127258120..127258138,-!p@chr7:127258120..127258138,-!1.37!22.42!PAX4;;chr11:31832581..31832601,-!p7@PAX6!1.37!22.42!PAX6;;chr20:22565370..22565388,-!p2@FOXA2!1.36!21.67!FOXA2;;chr11:2292226..2292270,-!p1@ASCL2!1.35!21.16!ASCL2;;chr8:41508303..41508308,-!p2@NKX6-3!1.34!20.66!NKX6-3;;chr2:239148671..239148686,-!p1@HES6!1.31!70.29!HES6;;chr17:53342311..53342400,+!p1@HLF!1.30!21.92!HLF;;chr1:27240455..27240474,-!p1@NR0B2!1.30!19.15!NR0B2;;chr2:242556880..242556899,-!p5@THAP4!1.30!19.15!THAP4;;chr11:31832807..31832823,-!p4@PAX6!1.30!18.89!PAX6;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.91!IRF6;;chr8:11561684..11561751,+!p1@GATA4!1.28!17.89!GATA4;;chr13:41593493..41593506,-!p8@ELF1!1.27!17.64!ELF1;;chr6:19837592..19837621,+!p1@ID4!1.26!103.54!ID4;;chr13:28494109..28494122,+!p2@PDX1!1.26!17.13!PDX1;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.63!HOXA10;;chr4:149363494..149363543,-!p1@NR3C2!1.24!16.38!NR3C2;;chr1:201979703..201979721,+!p2@ELF3!1.23!15.87!ELF3;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!15.87!MLXIPL;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.11!PAX6;;chr13:28543285..28543314,-!p2@CDX2!1.18!14.11!CDX2;;chr5:50681985..50682031,+!p2@ISL1!1.17!13.86!ISL1;;chr1:165325006..165325012,-!p2@LMX1A!1.17!13.86!LMX1A;;chr11:31839453..31839462,-!p9@PAX6!1.16!13.35!PAX6;;chr13:28543431..28543487,-!p1@CDX2!1.15!13.10!CDX2;;chr17:46622440..46622477,-!p5@HOXB2!1.14!14.36!HOXB2;;chr2:242556900..242556916,-!p6@THAP4!1.13!12.60!THAP4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.13!12.60!ZBED1;;chr18:56940611..56940660,-!p1@RAX!1.13!12.34!RAX;;chr9:3525867..3525902,-!p3@RFX3!1.12!41.82!RFX3;;chr2:176994408..176994492,+!p1@HOXD8!1.12!12.09!HOXD8;;chr7:27219833..27219845,-!p7@HOXA10!1.12!12.09!HOXA10;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.84!EBF3;;chr20:39317868..39317884,-!p1@MAFB!1.10!137.56!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.75!EPAS1;;chr11:31832687..31832704,-!p6@PAX6!1.10!11.59!PAX6;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.47!EBF1;;chr1:41827095..41827155,+!p1@FOXO6!1.08!14.86!FOXO6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.08!11.09!POU3F3;;chr4:149363475..149363492,-!p2@NR3C2!1.08!11.09!NR3C2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.83!HOXC5;;chr3:157824437..157824459,-!p5@SHOX2!1.06!10.58!SHOX2;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.33!HSF4;;chr2:182545282..182545294,-!p2@NEUROD1!1.04!10.08!NEUROD1;;chr13:37494275..37494304,-!p2@SMAD9!1.04!10.08!SMAD9;;chr5:124084493..124084524,-!p2@ZNF608!1.03!21.92!ZNF608;;chr2:182545296..182545307,-!p3@NEUROD1!1.03!9.83!NEUROD1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.02!20.41!ZNF395;;chr6:117198376..117198383,+!p2@RFX6!1.02!9.57!RFX6;;chr7:149471046..149471070,-!p4@ZNF467!1.02!9.57!ZNF467;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.57!MLLT3;;chr7:9961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!0.25!7.81!PHB2;;chr19:35759976..35760042,+!p4@USF2!0.25!7.81!USF2;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.25!7.05!GLIS2;;chr19:52800410..52800454,+!p1@ZNF480!0.25!6.55!ZNF480;;chr4:1873155..1873185,+!p3@WHSC1!0.25!3.78!WHSC1;;chr12:27485762..27485776,+!p3@ARNTL2!0.25!3.53!ARNTL2;;chr6:42419514..42419606,-!p1@TRERF1!0.25!2.77!TRERF1;;chr20:50808667..50808729,-!p3@ZFP64!0.25!2.27!ZFP64;;chr14:45722335..45722348,-!p3@MIS18BP1!0.25!2.02!MIS18BP1;;chr3:40547505..40547545,+!p2@ZNF620!0.25!1.76!ZNF620;;chr13:46549911..46549956,-!p3@ZC3H13!0.25!1.51!ZC3H13;;chr16:3333375..3333388,+!p3@ZNF263!0.25!1.51!ZNF263;;chr18:74207186..74207204,-!p3@ZNF516!0.25!1.51!ZNF516;;chr15:37391588..37391604,-!p11@MEIS2!0.25!1.26!MEIS2;;chr16:4366005..4366016,+!p@chr16:4366005..4366016,+!0.25!1.26!GLIS2;;chr11:707063..707088,-!p4@DEAF1!0.25!1.26!DEAF1;;chr13:46543346..46543367,-!p9@ZC3H13!0.25!1.26!ZC3H13;;chr6:21594391..21594431,+!p9@SOX4!0.25!1.26!SOX4;;chr7:4721885..4721945,+!p1@FOXK1!0.24!47.36!FOXK1;;chr19:6424783..6424802,-!p2@KHSRP!0.24!31.74!KHSRP;;chr19:9785743..9785784,-!p1@ZNF562!0.24!22.67!ZNF562;;chr19:17356697..17356762,-!p1@NR2F6!0.24!20.91!NR2F6;;chr12:498415..498492,-!p1@KDM5A!0.24!16.88!KDM5A;;chr20:23342783..23342857,+!p1@GZF1!0.24!13.86!GZF1;;chr19:11925071..11925113,+!p1@ZNF440!0.24!10.58!ZNF440;;chr20:42295713..42295738,+!p2@MYBL2!0.24!8.57!MYBL2;;chr3:75834687..75834720,-!p1@ZNF717!0.24!7.31!ZNF717;;chr15:37392724..37392757,-!p1@MEIS2!0.24!6.55!MEIS2;;chr5:178157651..178157689,-!p1@ZNF354A!0.24!5.79!ZNF354A;;chr14:89029336..89029363,+!p2@ZC3H14!0.24!5.54!ZC3H14;;chr19:9785724..9785740,-!p2@ZNF562!0.24!5.54!ZNF562;;chr8:145669791..145669834,-!p1@TONSL!0.24!3.78!TONSL;;chr19:8942962..8942987,-!p1@ZNF558!0.24!3.53!ZNF558;;chr16:30597000..30597068,-!p1@ZNF785!0.24!3.28!ZNF785;;chr19:35168633..35168652,+!p2@ZNF302!0.24!3.02!ZNF302;;chr1:151032142..151032195,+!p5@MLLT11!0.24!2.27!MLLT11;;chr20:25677399..25677433,-!p3@ZNF337!0.24!2.27!ZNF337;;chr2:242576946..242576996,-!p4@THAP4!0.24!2.27!THAP4;;chr12:72058102..72058127,+!p7@THAP2!0.24!2.02!THAP2;;chr19:36980756..36980795,-!p3@ZNF566!0.24!1.76!ZNF566;;chr6:28303901..28303944,-!p2@ZNF323!0.24!1.76!ZNF323;;chr19:11616645..11616663,-!p1@ZNF653!0.24!1.51!ZNF653;;chr19:12512015..12512044,-!p2@ZNF799!0.24!1.51!ZNF799;;chr19:35417844..35417877,+!p2@ZNF30!0.24!1.51!ZNF30;;chr14:64970593..64970627,+!p5@ZBTB1!0.24!1.51!ZBTB1;;chr17:4890672..4890692,-!p3@CAMTA2!0.24!1.26!CAMTA2;;chr4:1873216..1873238,+!p5@WHSC1!0.24!1.26!WHSC1;;chr20:306221..306232,+!p4@SOX12!0.24!1.26!SOX12;;chr1:114258267..114258270,-!p5@PHTF1!0.24!1.01!PHTF1;;chr1:164528687..164528711,+!p6@PBX1!0.24!1.01!PBX1;;chr6:157098993..157099006,+!p12@ARID1B!0.24!1.01!ARID1B;;chr6:157099016..157099027,+!p13@ARID1B!0.24!1.01!ARID1B;;chr6:32158004..32158015,-!p2@PBX2!0.24!1.01!PBX2;;chr2:46524865..46524870,+!p9@EPAS1!0.24!1.01!EPAS1;;chr15:37392687..37392698,-!p14@MEIS2!0.24!1.01!MEIS2;;chr15:35280823..35280852,-!p6@ZNF770!0.24!0.76!ZNF770;;chr15:56970953..56970965,-!p9@ZNF280D!0.24!0.76!ZNF280D;;chr16:4323246..4323299,-!p5@TFAP4!0.24!0.76!TFAP4;;chr16:54319010..54319041,-!p8@IRX3!0.24!0.76!IRX3;;chr17:46682321..46682362,-!p1@HOXB6!0.24!0.76!HOXB6;;chr17:46806373..46806386,-!p6@HOXB13!0.24!0.76!HOXB13;;chr17:46806404..46806415,-!p7@HOXB13!0.24!0.76!HOXB13;;chr17:7197881..7197901,-!p3@YBX2!0.24!0.76!YBX2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.24!0.76!ZBTB7C;;chr19:11750543..11750565,+!p2@ZNF833P!0.24!0.76!ZNF833P;;chr19:12595565..12595576,-!p3@ZNF709!0.24!0.76!ZNF709;;chr19:24216347..24216356,+!p7@ZNF254!0.24!0.76!ZNF254;;chr19:35417924..35417935,+!p5@ZNF30!0.24!0.76!ZNF30;;chr19:37958064..37958076,-!p4@ZNF569!0.24!0.76!ZNF569;;chr19:38714830..38714845,-!p5@DPF1!0.24!0.76!DPF1;;chr19:46800289..46800327,+!p2@HIF3A!0.24!0.76!HIF3A;;chr19:57946675..57946680,+!p2@ZNF749!0.24!0.76!ZNF749;;chr19:58740449..58740456,+!p3@ZNF544!0.24!0.76!ZNF544;;chr1:114301553..114301576,-!p6@PHTF1!0.24!0.76!PHTF1;;
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
|fonse_cell_line=FF:0101120,FF:0101967
|fonse_cell_line=FF:0101120,FF:0101967
|fonse_cell_line_closure=FF:0101120,FF:0101967
|fonse_cell_line_closure=FF:0101120,FF:0101967
Line 35: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.ctss.bed.gz
|id=FF:10589-108D4
|id=FF:10589-108D4
|is_a=CL:0002535;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100297;;FF:0101967
|is_a=CL:0002535;;EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101967
|is_obsolete=
|library_id=CNhs11725
|library_id_phase_based=2:CNhs11725
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10589
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10589
|name=argyrophil small cell carcinoma cell line:TC-YIK
|name=argyrophil small cell carcinoma cell line:TC-YIK
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11725,LSID819,release009,COMPLETED
|profile_hcage=CNhs11725,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=108
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|rna_catalog_number=
Line 56: Line 79:
|rna_tube_id=108D4
|rna_tube_id=108D4
|rna_weight_ug=78.01812
|rna_weight_ug=78.01812
|rnaseq_library_id=RDhi10073
|sample_age=31
|sample_age=31
|sample_category=cell lines
|sample_cell_catalog=RCB0443
|sample_cell_catalog=RCB0443
|sample_cell_line=TC-YIK
|sample_cell_line=TC-YIK
Line 77: Line 102:
|sample_tissue=cervix
|sample_tissue=cervix
|top_motifs=VSX1,2:3.6507915571;HNF1A:3.1498475594;NANOG:3.12561698813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75106013707;POU6F1:2.38449675319;SNAI1..3:2.35943060792;YY1:2.35147076981;FOXA2:2.27013025185;NKX6-1,2:2.20973688567;bHLH_family:2.1684821406;ZEB1:2.16413114166;LHX3,4:2.08742180018;NRF1:2.00285672862;DBP:1.99998361048;HOX{A6,A7,B6,B7}:1.97302982241;RFX2..5_RFXANK_RFXAP:1.96046980567;PITX1..3:1.94342486026;MYOD1:1.91803463521;RFX1:1.88877834026;HNF4A_NR2F1,2:1.71347563244;LMO2:1.67328448416;ONECUT1,2:1.58445765137;NKX2-1,4:1.53247801283;FOXM1:1.52003199962;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.44593593011;ADNP_IRX_SIX_ZHX:1.38237745633;FOXP1:1.3635665031;FOX{D1,D2}:1.28250143012;RBPJ:1.26898436674;AIRE:1.23633011907;ARID5B:1.2173482481;E2F1..5:1.16299780872;TEF:1.05258734002;CDX1,2,4:1.02824735568;FOX{F1,F2,J1}:0.956301349771;NKX3-1:0.954751730619;REST:0.953699687586;ZBTB16:0.944010007105;NFY{A,B,C}:0.943688621799;ZNF143:0.926189635774;NKX2-3_NKX2-5:0.885387081031;GFI1:0.832564408457;ELK1,4_GABP{A,B1}:0.81522828784;FOXL1:0.797100543828;ZFP161:0.795061673971;SOX{8,9,10}:0.750819874526;PAX4:0.696089374067;PBX1:0.674819081257;TOPORS:0.674034147644;MYB:0.559919970767;POU1F1:0.530997751919;CUX2:0.498105439025;PAX5:0.47247391656;AHR_ARNT_ARNT2:0.428693851096;GATA6:0.383237366351;HAND1,2:0.363494126772;PAX3,7:0.333568703665;HIC1:0.324761001303;CDC5L:0.256756317659;IKZF2:0.256481899415;RREB1:0.255607793324;MTE{core}:0.251578308206;BREu{core}:0.24506342441;FOXQ1:0.2346196994;PAX6:0.222763904326;STAT5{A,B}:0.214454500849;FOXD3:0.213282870294;HIF1A:0.152698533291;MED-1{core}:0.151237486538;XCPE1{core}:0.141717855544;SP1:0.138162010922;HMGA1,2:0.112489568083;TFAP2B:0.0777992501212;PRRX1,2:0.0711636900206;NHLH1,2:0.0460812310327;KLF4:0.0389773572323;EVI1:0.0305374335792;PAX2:0.0236166919577;NR1H4:0.0220958251639;POU5F1:0.0127981022871;JUN:0.00573110345848;PAX8:-0.00442478466544;FOX{I1,J2}:-0.00752434445541;PPARG:-0.0135588645663;ATF5_CREB3:-0.0162087191191;NANOG{mouse}:-0.016474974273;ESR1:-0.0174511757676;TBP:-0.0242640239623;ZBTB6:-0.0301561990449;TAL1_TCF{3,4,12}:-0.0404586074943;TGIF1:-0.0502859654578;TFDP1:-0.0621635387892;SOX5:-0.0934909685956;NR6A1:-0.0973456204163;ATF6:-0.107817563754;POU2F1..3:-0.133844273065;ZNF423:-0.150460693786;MTF1:-0.165819062237;FOXN1:-0.184320799916;NR3C1:-0.185191334874;PDX1:-0.195561711787;PATZ1:-0.199475568457;OCT4_SOX2{dimer}:-0.249863462492;HOX{A4,D4}:-0.256566449931;SREBF1,2:-0.260913058951;RXR{A,B,G}:-0.308058083565;ZNF384:-0.311550328618;BPTF:-0.313655429378;ATF2:-0.321298400379;MZF1:-0.325332764077;ATF4:-0.336923676853;MEF2{A,B,C,D}:-0.34157236227;ESRRA:-0.342026339197;HES1:-0.352873449716;CRX:-0.362929725293;GFI1B:-0.370145780155;FOXP3:-0.388416456966;EBF1:-0.395677076287;SOX17:-0.437737451071;NFE2L1:-0.468072586195;ALX1:-0.482280997176;AR:-0.48716369273;NR5A1,2:-0.488048661762;UFEwm:-0.5101632246;NKX2-2,8:-0.53514220858;HBP1_HMGB_SSRP1_UBTF:-0.551546780638;ELF1,2,4:-0.553077980208;MYFfamily:-0.58009259543;EN1,2:-0.581541005721;HLF:-0.617361521342;EGR1..3:-0.631348948028;PRDM1:-0.63263529839;SPIB:-0.635150753205;HOX{A5,B5}:-0.635849773321;CREB1:-0.669865523097;FOSL2:-0.689369169092;FOS_FOS{B,L1}_JUN{B,D}:-0.692448146845;HSF1,2:-0.69361342099;GZF1:-0.709751995916;GTF2I:-0.710683704662;BACH2:-0.710731122868;IKZF1:-0.733515205929;NFKB1_REL_RELA:-0.741060682864;MAZ:-0.74251714772;NFE2:-0.758284837357;TLX2:-0.772589735793;ZIC1..3:-0.777458687355;RUNX1..3:-0.799035380619;FOXO1,3,4:-0.807287128327;TP53:-0.821373252862;TFAP2{A,C}:-0.822705139778;GATA4:-0.827052559352;EP300:-0.836420696909;LEF1_TCF7_TCF7L1,2:-0.848912072238;SPI1:-0.88682737183;IRF7:-0.905255677082;RORA:-0.906524761771;T:-0.919446912603;TBX4,5:-0.926417828147;TFCP2:-0.948865368707;TLX1..3_NFIC{dimer}:-0.953906724176;GLI1..3:-0.95429548788;SOX2:-0.965552088373;XBP1:-0.975157915048;NFIX:-1.00767614957;ETS1,2:-1.03402819027;IRF1,2:-1.03543640495;POU3F1..4:-1.04909948896;PAX1,9:-1.05116119452;ZNF148:-1.07633551981;GTF2A1,2:-1.09568606597;HOXA9_MEIS1:-1.11417415372;NKX3-2:-1.16064303117;DMAP1_NCOR{1,2}_SMARC:-1.16304042871;STAT1,3:-1.17780569201;MYBL2:-1.19145590247;SMAD1..7,9:-1.22352126812;ALX4:-1.2256591222;NFE2L2:-1.24928352655;STAT2,4,6:-1.2965853645;MAFB:-1.33197402571;CEBPA,B_DDIT3:-1.35034418487;SRF:-1.36853323411;GCM1,2:-1.3720119923;SPZ1:-1.38663333265;HMX1:-1.40349225878;TEAD1:-1.43925883843;NFIL3:-1.47975592391;RXRA_VDR{dimer}:-1.48665734874;TFAP4:-1.52320267986;ZNF238:-1.74848635338;NFATC1..3:-2.20567967264
|top_motifs=VSX1,2:3.6507915571;HNF1A:3.1498475594;NANOG:3.12561698813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75106013707;POU6F1:2.38449675319;SNAI1..3:2.35943060792;YY1:2.35147076981;FOXA2:2.27013025185;NKX6-1,2:2.20973688567;bHLH_family:2.1684821406;ZEB1:2.16413114166;LHX3,4:2.08742180018;NRF1:2.00285672862;DBP:1.99998361048;HOX{A6,A7,B6,B7}:1.97302982241;RFX2..5_RFXANK_RFXAP:1.96046980567;PITX1..3:1.94342486026;MYOD1:1.91803463521;RFX1:1.88877834026;HNF4A_NR2F1,2:1.71347563244;LMO2:1.67328448416;ONECUT1,2:1.58445765137;NKX2-1,4:1.53247801283;FOXM1:1.52003199962;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.44593593011;ADNP_IRX_SIX_ZHX:1.38237745633;FOXP1:1.3635665031;FOX{D1,D2}:1.28250143012;RBPJ:1.26898436674;AIRE:1.23633011907;ARID5B:1.2173482481;E2F1..5:1.16299780872;TEF:1.05258734002;CDX1,2,4:1.02824735568;FOX{F1,F2,J1}:0.956301349771;NKX3-1:0.954751730619;REST:0.953699687586;ZBTB16:0.944010007105;NFY{A,B,C}:0.943688621799;ZNF143:0.926189635774;NKX2-3_NKX2-5:0.885387081031;GFI1:0.832564408457;ELK1,4_GABP{A,B1}:0.81522828784;FOXL1:0.797100543828;ZFP161:0.795061673971;SOX{8,9,10}:0.750819874526;PAX4:0.696089374067;PBX1:0.674819081257;TOPORS:0.674034147644;MYB:0.559919970767;POU1F1:0.530997751919;CUX2:0.498105439025;PAX5:0.47247391656;AHR_ARNT_ARNT2:0.428693851096;GATA6:0.383237366351;HAND1,2:0.363494126772;PAX3,7:0.333568703665;HIC1:0.324761001303;CDC5L:0.256756317659;IKZF2:0.256481899415;RREB1:0.255607793324;MTE{core}:0.251578308206;BREu{core}:0.24506342441;FOXQ1:0.2346196994;PAX6:0.222763904326;STAT5{A,B}:0.214454500849;FOXD3:0.213282870294;HIF1A:0.152698533291;MED-1{core}:0.151237486538;XCPE1{core}:0.141717855544;SP1:0.138162010922;HMGA1,2:0.112489568083;TFAP2B:0.0777992501212;PRRX1,2:0.0711636900206;NHLH1,2:0.0460812310327;KLF4:0.0389773572323;EVI1:0.0305374335792;PAX2:0.0236166919577;NR1H4:0.0220958251639;POU5F1:0.0127981022871;JUN:0.00573110345848;PAX8:-0.00442478466544;FOX{I1,J2}:-0.00752434445541;PPARG:-0.0135588645663;ATF5_CREB3:-0.0162087191191;NANOG{mouse}:-0.016474974273;ESR1:-0.0174511757676;TBP:-0.0242640239623;ZBTB6:-0.0301561990449;TAL1_TCF{3,4,12}:-0.0404586074943;TGIF1:-0.0502859654578;TFDP1:-0.0621635387892;SOX5:-0.0934909685956;NR6A1:-0.0973456204163;ATF6:-0.107817563754;POU2F1..3:-0.133844273065;ZNF423:-0.150460693786;MTF1:-0.165819062237;FOXN1:-0.184320799916;NR3C1:-0.185191334874;PDX1:-0.195561711787;PATZ1:-0.199475568457;OCT4_SOX2{dimer}:-0.249863462492;HOX{A4,D4}:-0.256566449931;SREBF1,2:-0.260913058951;RXR{A,B,G}:-0.308058083565;ZNF384:-0.311550328618;BPTF:-0.313655429378;ATF2:-0.321298400379;MZF1:-0.325332764077;ATF4:-0.336923676853;MEF2{A,B,C,D}:-0.34157236227;ESRRA:-0.342026339197;HES1:-0.352873449716;CRX:-0.362929725293;GFI1B:-0.370145780155;FOXP3:-0.388416456966;EBF1:-0.395677076287;SOX17:-0.437737451071;NFE2L1:-0.468072586195;ALX1:-0.482280997176;AR:-0.48716369273;NR5A1,2:-0.488048661762;UFEwm:-0.5101632246;NKX2-2,8:-0.53514220858;HBP1_HMGB_SSRP1_UBTF:-0.551546780638;ELF1,2,4:-0.553077980208;MYFfamily:-0.58009259543;EN1,2:-0.581541005721;HLF:-0.617361521342;EGR1..3:-0.631348948028;PRDM1:-0.63263529839;SPIB:-0.635150753205;HOX{A5,B5}:-0.635849773321;CREB1:-0.669865523097;FOSL2:-0.689369169092;FOS_FOS{B,L1}_JUN{B,D}:-0.692448146845;HSF1,2:-0.69361342099;GZF1:-0.709751995916;GTF2I:-0.710683704662;BACH2:-0.710731122868;IKZF1:-0.733515205929;NFKB1_REL_RELA:-0.741060682864;MAZ:-0.74251714772;NFE2:-0.758284837357;TLX2:-0.772589735793;ZIC1..3:-0.777458687355;RUNX1..3:-0.799035380619;FOXO1,3,4:-0.807287128327;TP53:-0.821373252862;TFAP2{A,C}:-0.822705139778;GATA4:-0.827052559352;EP300:-0.836420696909;LEF1_TCF7_TCF7L1,2:-0.848912072238;SPI1:-0.88682737183;IRF7:-0.905255677082;RORA:-0.906524761771;T:-0.919446912603;TBX4,5:-0.926417828147;TFCP2:-0.948865368707;TLX1..3_NFIC{dimer}:-0.953906724176;GLI1..3:-0.95429548788;SOX2:-0.965552088373;XBP1:-0.975157915048;NFIX:-1.00767614957;ETS1,2:-1.03402819027;IRF1,2:-1.03543640495;POU3F1..4:-1.04909948896;PAX1,9:-1.05116119452;ZNF148:-1.07633551981;GTF2A1,2:-1.09568606597;HOXA9_MEIS1:-1.11417415372;NKX3-2:-1.16064303117;DMAP1_NCOR{1,2}_SMARC:-1.16304042871;STAT1,3:-1.17780569201;MYBL2:-1.19145590247;SMAD1..7,9:-1.22352126812;ALX4:-1.2256591222;NFE2L2:-1.24928352655;STAT2,4,6:-1.2965853645;MAFB:-1.33197402571;CEBPA,B_DDIT3:-1.35034418487;SRF:-1.36853323411;GCM1,2:-1.3720119923;SPZ1:-1.38663333265;HMX1:-1.40349225878;TEAD1:-1.43925883843;NFIL3:-1.47975592391;RXRA_VDR{dimer}:-1.48665734874;TFAP4:-1.52320267986;ZNF238:-1.74848635338;NFATC1..3:-2.20567967264
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10589-108D4;search_select_hide=table117:FF:10589-108D4
}}
}}

Latest revision as of 14:30, 3 June 2020

Name:argyrophil small cell carcinoma cell line:TC-YIK
Species:Human (Homo sapiens)
Library ID:CNhs11725
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
age31
cell typeunclassifiable
cell lineTC-YIK
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005178
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11725 CAGE DRX007829 DRR008701
Accession ID Hg19

Library idBAMCTSS
CNhs11725 DRZ000126 DRZ001511
Accession ID Hg38

Library idBAMCTSS
CNhs11725 DRZ011476 DRZ012861
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005178
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10073 RNA-Seq DRX057130 DRR062889
Accession ID Hg19

Library idBAMCTSS
RDhi10073 DRZ007965


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.299
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0976
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.069
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0976
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0102
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.265
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.121
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.113
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.303
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.399
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0976
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0501
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.243
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell1.197
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11725

Jaspar motifP-value
MA0002.23.08261e-5
MA0003.10.539
MA0004.10.0583
MA0006.10.235
MA0007.10.448
MA0009.10.728
MA0014.10.337
MA0017.10.341
MA0018.20.164
MA0019.10.899
MA0024.14.06331e-5
MA0025.10.221
MA0027.10.394
MA0028.10.0938
MA0029.10.498
MA0030.10.0558
MA0031.10.0748
MA0035.20.578
MA0038.10.128
MA0039.20.365
MA0040.10.809
MA0041.10.463
MA0042.10.607
MA0043.10.92
MA0046.11.11552e-42
MA0047.20.00921
MA0048.10.494
MA0050.12.66862e-5
MA0051.10.00591
MA0052.10.0121
MA0055.10.207
MA0057.10.223
MA0058.10.012
MA0059.10.00856
MA0060.19.26993e-4
MA0061.16.51271e-5
MA0062.20.0687
MA0065.20.771
MA0066.10.327
MA0067.10.582
MA0068.10.546
MA0069.10.492
MA0070.10.335
MA0071.10.736
MA0072.10.713
MA0073.10.538
MA0074.10.344
MA0076.10.0337
MA0077.10.891
MA0078.10.407
MA0079.20.802
MA0080.25.45416e-9
MA0081.10.00192
MA0083.18.21898e-4
MA0084.10.589
MA0087.10.726
MA0088.10.0955
MA0090.18.21113e-4
MA0091.10.716
MA0092.10.1
MA0093.10.0427
MA0099.22.03989e-17
MA0100.10.11
MA0101.16.96638e-5
MA0102.20.0253
MA0103.13.06817e-6
MA0104.20.00187
MA0105.17.65195e-4
MA0106.10.364
MA0107.15.88325e-6
MA0108.20.817
MA0111.10.712
MA0112.20.00403
MA0113.10.302
MA0114.10.0443
MA0115.10.00106
MA0116.10.0227
MA0117.10.639
MA0119.10.113
MA0122.10.384
MA0124.10.235
MA0125.10.0262
MA0131.10.551
MA0135.10.578
MA0136.11.02136e-6
MA0137.20.0717
MA0138.20.489
MA0139.10.674
MA0140.10.564
MA0141.10.585
MA0142.10.673
MA0143.10.0251
MA0144.10.0134
MA0145.10.0531
MA0146.10.573
MA0147.10.00245
MA0148.10.168
MA0149.10.872
MA0150.18.63331e-5
MA0152.10.906
MA0153.11.30226e-26
MA0154.10.071
MA0155.10.485
MA0156.12.69252e-4
MA0157.10.215
MA0159.10.542
MA0160.10.369
MA0162.10.288
MA0163.10.0188
MA0164.10.314
MA0258.10.0697
MA0259.10.0141



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11725

Novel motifP-value
10.806
100.466
1000.354
1010.978
1020.628
1030.158
1040.375
1050.58
1062.74761e-5
1070.0104
1080.997
1090.536
110.37
1100.434
1110.509
1120.419
1130.832
1140.128
1150.814
1160.448
1170.724
1180.73
1190.24
120.967
1200.816
1210.656
1220.0818
1230.385
1240.495
1250.92
1260.97
1270.112
1280.0177
1290.395
130.356
1300.385
1310.573
1320.325
1330.358
1340.612
1350.0858
1360.489
1370.355
1380.982
1390.487
140.615
1400.985
1410.552
1420.579
1435.59403e-4
1440.103
1450.239
1460.595
1470.419
1480.337
1490.114
150.431
1500.242
1510.25
1520.0111
1530.629
1540.564
1550.325
1560.958
1570.589
1580.996
1590.268
160.51
1600.815
1610.923
1620.596
1630.124
1640.577
1650.256
1660.394
1670.454
1680.193
1690.026
170.397
180.014
190.169
20.502
200.427
210.478
220.0612
230.00241
240.136
250.669
260.683
270.498
280.964
290.615
30.429
300.256
310.589
320.0116
330.796
340.262
350.587
360.45
370.171
380.358
390.202
40.816
400.907
410.0543
420.515
430.118
440.395
450.216
460.233
470.727
480.842
490.292
50.248
500.543
510.366
520.102
530.768
540.304
550.0845
560.889
570.962
580.693
590.0548
60.693
600.0145
610.989
620.345
630.151
640.761
650.0797
660.811
670.403
680.79
690.909
70.679
700.0854
710.267
720.153
730.0745
740.169
750.716
760.734
770.311
780.486
790.2
80.781
800.218
810.189
820.684
830.0512
840.96
850.0137
860.319
870.691
880.474
890.192
90.0581
900.167
910.156
920.316
930.469
940.0685
950.614
960.354
970.874
980.524
990.877



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11725


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002535 (epithelial cell of cervix)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0000483 (epithelium)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0006955 (uterine epithelium)
0004801 (cervix epithelium)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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