FF:10600-108E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004833 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007958;DRR008830;DRZ000255;DRZ001640;DRZ011605;DRZ012990 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:4231,DOID:201,DOID:0060100,DOID:1115,DOID:1907 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100400,FF:0100453 | |fonse_cell_line=FF:0100400,FF:0100453 | ||
|fonse_cell_line_closure=FF:0100400,FF:0100453 | |fonse_cell_line_closure=FF:0100400,FF:0100453 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10600-108E6 | |id=FF:10600-108E6 | ||
|is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF: | |is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000210;;FF:0100460 | ||
|is_obsolete= | |||
|library_id=CNhs11729 | |||
|library_id_phase_based=2:CNhs11729 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10600 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10600 | |||
|name=myxofibrosarcoma cell line:MFH-ino | |name=myxofibrosarcoma cell line:MFH-ino | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11729,LSID819,release009,COMPLETED | |profile_hcage=CNhs11729,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.0726119822414413,0.304355221763312,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278450383471769,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.189886926093631,0,0,0,0,0,0,0,0,0.0733909636898296,0,0,0,0.195211969605328,0,0.0100605999031374,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00194581349252135,0.0715201478001359,0,0,0,-0.0921996233194002,0.0046892942142297,0,0,0,0,-0.0980353512377064,0.397984868942919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.195211969605328,0,0,0,0.150152235657179,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.195211969605328,0,0,0,0,0,0,0,0,0.0822254944682378,0,-0.474086218752008,-0.143515142523472,0,0,0.343628382448382,0,0,0,0,0,0,0.195211969605328,0,0,0.386436360910704,0,-0.0504125515893149,0,0,0,0,0,0.0239321388553949,0,0.0416286357605887,0.446211966785901,0,0,0,0,0.186490223449064,0,-0.120879483793741,0.112491801281911,0.107792781650995,0.316546876790285,-0.055712496781182,0,0,0,-0.628636534535128,0.631916255242085,0,0,-0.02417386694921,0.166942654087471,0,0,0.433417068205199,0,-0.0769104338608936,0.0274583884247161,0,0,0,0,0,0,0,0,0,0,0.195211969605328,0,0,-0.0574934668214365,-0.13177662707364,0,0,0,0,0.312573975951757,0,0,0.210771259856409,0.050119084834469,0.00384925310687934,0.186994553173001,0,-0.302389727009913,-0.0081775790022286,-0.617878332873359,-0.0921996233194002,-0.147401849371139,-0.189981719549847,0,0.213408152104086,0.284975991877097,0.0654944864198955,0.0715201478001359,0,-0.534823962990843,0.134968708594568,0,0,0,-0.0216240175036044,0,0.0643501625257044,0.253405055257051,0.11136318607598,0.097817863299093,-0.0155898090064565,-0.0494924524760323,-0.0485820772546788,0.0580734563459935,0.126620962916381,0.000972906746260675,0.010201068916497,0.144580366115467,0,0.0264251029583911,-0.0263085076743101,0.325277626712479,-0.184052779358482,0,-0.0522040679907838,-0.0683442610773682,0.0131275257989438,-0.152038632301405,0.182206763971337,0,0,0.399528364203767,0,0,0,0,0,0.24223086889432,0.0445652727828091,-0.232855561555545,0,0.0936351689075905,0.063074356796891,0.0956507623560635,0,-0.329388445534857,0,-0.133528312503483,-0.01963902233127,0,0.0710472527559074,0.0892118164691863,0.0353866582036959,0.0093785884284594,-0.0584468268118252,0.093989715981102,-0.0644253018116587,0.126378648750956,0.392557831016473,0.132644983632764,0.107085137130041,0,0.264220183384578,0.106375553795775,0.0270014593963366,-0.137199064529493,0.278728345147212,-0.227357747024644,0,0.289454877422236,0,-0.365409902803602,-0.211029381719438,-0.439289374580686,0.116472539452104,0,0.158881851570337,-0.592918968168646,0,0.0858250154720133,0.00207438112310254,0,0.179037286419163,-0.502483996907254,-0.046948242987688,-0.0413834718765304,0,0.161511030385577,0,0,-0.262222056374703,-0.235476037764389,0,0.519118741702895,0.283458765186762,-0.0201586253823192,0.468086342378041,0,0,-0.316295968238923,0,0,-0.0913718359547614,0,0.166090361458666,-0.0581143718814272,0.0294126339371273,-0.108622809454255,0,0,-0.177527765965176,0,0.434952792137181,0,0,-0.0851791117219225,0.166826775127946,0,0,0,0,0.0967106212030018,-0.0589565109853561,0,0,0,0,0,-0.131058506310263,0.388686439517377,0,0,0,0,0,0,0.195211969605328,0,0,0.195211969605328,0.814630058019133,0.0554902898939333,0.308755978143777,0,0,0,0,-0.215723402553475,-0.0080245924893953,0,0.0633492631076968,0,0,0,0,0.243263379964591,0,0,0.097605984802664,0,0.137481512551664,-0.265805678525316,0,0,0,0.466565368132035,0,0,0,0,0.0909531316116685,0,0,0,0,-0.0586728645027093,-0.0815818795468414,0,0.202946597857063,-0.0894374673497924,0.306262749869165,0,0,0.59855189512121,0,0,-0.521388093769979,0,0.329404369753802,-0.0209247759461169,0,0,0,0,0.00768238326257542,0,-0.0191025427944272,0.097605984802664,0,0,0,0,0,0,0,0,0,0,-0.206202700541929,-0.0922240566585104,0.158549701627522,0,0,0,0,0,0,0.073499961723761,-0.0304092045497926,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.413498473921295,0,0,0.615299547206644,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0718928835698807,0.0726119822414413,0,0.195211969605328,0,0,0,0,0,-0.27483329820609,0,0.195211969605328,0,0,-0.113884373708977,0,0,0,0.409759843074113,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.097605984802664,0,0,0,0.728490666719124,0,0,0.0495743052211457,0,0,-0.0167416557229433,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195211969605328,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.382293106960754,0.178342194138276,0.0927423771981487,0,0,0,0.0432204123202092,0.195211969605328,0,0.0355756538093568,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278450383471769,0,0,0,0,0,0,0,0,0,0,0,0,0.164702184876901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.097605984802664,0,0,0,0,0,0,0.0635946215272475,0.195211969605328,0,0,0,0,0,0,0.824461649756833,0,0.195211969605328,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0178742600517152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329404369753802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238526482988272,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.110835337375301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0934513074229546,0,0,0,0,0.281767259092883,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.189886926093631,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0.195211969605328,0,0,0,0,0,0.195211969605328,0,0,0,0,0,0,0,0,0,0,0,0,0,0.011679757745880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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.08E+08 | ||
|rna_weight_ug=34.01343 | |rna_weight_ug=34.01343 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0749 | |sample_cell_catalog=RCB0749 | ||
|sample_cell_line=MFH-ino | |sample_cell_line=MFH-ino | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.34424406690744e-255!GO:0043226;organelle;7.46725475622058e-207!GO:0043229;intracellular organelle;2.86979458381129e-206!GO:0043231;intracellular membrane-bound organelle;5.80561846931752e-203!GO:0043227;membrane-bound organelle;7.16846989874252e-203!GO:0005737;cytoplasm;6.51566991933309e-171!GO:0044422;organelle part;2.86423372798376e-141!GO:0044446;intracellular organelle part;6.50609171619969e-140!GO:0044444;cytoplasmic part;2.21501053962483e-111!GO:0032991;macromolecular complex;1.66118676219881e-100!GO:0005634;nucleus;2.63091484651067e-98!GO:0044237;cellular metabolic process;3.14793777946587e-95!GO:0044238;primary metabolic process;4.18889569237993e-95!GO:0043170;macromolecule metabolic process;1.76193576309638e-90!GO:0030529;ribonucleoprotein complex;1.32447104865117e-81!GO:0005515;protein binding;3.94815070277692e-81!GO:0044428;nuclear part;1.6902033749349e-79!GO:0043233;organelle lumen;2.08311385267455e-77!GO:0031974;membrane-enclosed lumen;2.08311385267455e-77!GO:0003723;RNA binding;4.15596146642257e-71!GO:0005739;mitochondrion;1.5407383589754e-61!GO:0043283;biopolymer metabolic process;1.068097253459e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.28993125574165e-54!GO:0016043;cellular component organization and biogenesis;2.17419906994966e-53!GO:0043234;protein complex;5.044721131938e-52!GO:0031981;nuclear lumen;1.15900629232664e-50!GO:0006396;RNA processing;5.92965874456745e-50!GO:0010467;gene expression;7.03455195559802e-49!GO:0005840;ribosome;4.55926010895357e-46!GO:0019538;protein metabolic process;4.65524083666088e-45!GO:0043228;non-membrane-bound organelle;1.43175513360958e-44!GO:0043232;intracellular non-membrane-bound organelle;1.43175513360958e-44!GO:0006412;translation;1.5003865843133e-43!GO:0006259;DNA metabolic process;2.41951744682745e-43!GO:0033036;macromolecule localization;1.62904601504732e-41!GO:0006996;organelle organization and biogenesis;3.74467795712492e-40!GO:0044260;cellular macromolecule metabolic process;5.52460102485032e-40!GO:0015031;protein transport;8.28285259044295e-40!GO:0044429;mitochondrial part;1.05588189197503e-39!GO:0003735;structural constituent of ribosome;1.31418515022581e-39!GO:0044267;cellular protein metabolic process;1.4659518944289e-39!GO:0016071;mRNA metabolic process;7.51178653824976e-39!GO:0031090;organelle membrane;4.37817004151307e-38!GO:0008104;protein localization;1.7868061796234e-37!GO:0045184;establishment of protein localization;3.98062765974412e-37!GO:0031967;organelle envelope;1.96194336756869e-36!GO:0031975;envelope;3.0908237780763e-36!GO:0046907;intracellular transport;4.29415699265232e-36!GO:0008380;RNA splicing;1.53786033505493e-35!GO:0033279;ribosomal subunit;2.71707880273854e-35!GO:0006397;mRNA processing;1.51677688007902e-34!GO:0005829;cytosol;2.05311893406268e-34!GO:0009058;biosynthetic process;1.83575045642622e-33!GO:0007049;cell cycle;3.45482244771375e-33!GO:0003676;nucleic acid binding;6.41472912285454e-33!GO:0044249;cellular biosynthetic process;1.21437663944963e-32!GO:0005654;nucleoplasm;5.61432154811573e-32!GO:0009059;macromolecule biosynthetic process;1.36200140401947e-31!GO:0065003;macromolecular complex assembly;7.28026666572931e-31!GO:0000166;nucleotide binding;4.77734379542514e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.20947336159903e-29!GO:0006886;intracellular protein transport;2.18933600594367e-28!GO:0022607;cellular component assembly;1.02517801680644e-26!GO:0044451;nucleoplasm part;3.6391294208386e-26!GO:0005681;spliceosome;2.75538090296853e-25!GO:0005740;mitochondrial envelope;4.51370098126934e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.6473011864715e-25!GO:0016070;RNA metabolic process;1.47044801337881e-24!GO:0022402;cell cycle process;1.51824292758987e-24!GO:0006974;response to DNA damage stimulus;6.21914208370304e-24!GO:0051649;establishment of cellular localization;7.43424296134739e-24!GO:0051641;cellular localization;8.14749388972659e-24!GO:0000278;mitotic cell cycle;9.20967671731899e-24!GO:0017111;nucleoside-triphosphatase activity;1.98825409781811e-23!GO:0016462;pyrophosphatase activity;2.15755482547497e-23!GO:0031966;mitochondrial membrane;2.53655763716034e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.62015405524256e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.87246755440539e-23!GO:0019866;organelle inner membrane;4.69937435646162e-23!GO:0032553;ribonucleotide binding;2.15851641150156e-21!GO:0032555;purine ribonucleotide binding;2.15851641150156e-21!GO:0005730;nucleolus;2.15851641150156e-21!GO:0005694;chromosome;2.45513469056189e-21!GO:0005743;mitochondrial inner membrane;3.86277267952471e-21!GO:0005524;ATP binding;6.04785567708968e-21!GO:0017076;purine nucleotide binding;1.31068401607457e-20!GO:0044445;cytosolic part;1.45936553832642e-20!GO:0032559;adenyl ribonucleotide binding;1.90886988551573e-20!GO:0006281;DNA repair;3.10617252022402e-20!GO:0006119;oxidative phosphorylation;1.29064283157283e-19!GO:0030554;adenyl nucleotide binding;2.17740981898706e-19!GO:0000087;M phase of mitotic cell cycle;5.02972123407339e-19!GO:0044455;mitochondrial membrane part;5.26049950220596e-19!GO:0016874;ligase activity;5.55216748429405e-19!GO:0006260;DNA replication;6.63906370725735e-19!GO:0051276;chromosome organization and biogenesis;6.88385948971844e-19!GO:0044427;chromosomal part;9.26592276989048e-19!GO:0007067;mitosis;9.61729372640642e-19!GO:0022403;cell cycle phase;1.32969467303836e-18!GO:0015935;small ribosomal subunit;1.48406251049137e-18!GO:0006457;protein folding;1.52718431048504e-18!GO:0008134;transcription factor binding;3.51449770251034e-18!GO:0015934;large ribosomal subunit;6.48427934929765e-18!GO:0031980;mitochondrial lumen;1.53017001003455e-17!GO:0005759;mitochondrial matrix;1.53017001003455e-17!GO:0051301;cell division;2.86080200186321e-17!GO:0022618;protein-RNA complex assembly;1.01159127216897e-16!GO:0006512;ubiquitin cycle;1.34297002290314e-16!GO:0009719;response to endogenous stimulus;2.86215423657982e-16!GO:0016887;ATPase activity;4.60994498893825e-16!GO:0042623;ATPase activity, coupled;1.67556036911008e-15!GO:0000279;M phase;4.09808858535958e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;4.54503432656103e-15!GO:0012505;endomembrane system;5.68999872632845e-15!GO:0000502;proteasome complex (sensu Eukaryota);8.87251099428321e-15!GO:0006605;protein targeting;1.13916969406015e-14!GO:0043285;biopolymer catabolic process;1.16379448308385e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.27150362052567e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.37214863702677e-14!GO:0005746;mitochondrial respiratory chain;1.42250927314018e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.97470191144336e-14!GO:0000375;RNA splicing, via transesterification reactions;1.97470191144336e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.97470191144336e-14!GO:0006323;DNA packaging;2.35648231791596e-14!GO:0019941;modification-dependent protein catabolic process;2.5242198457597e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.5242198457597e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.20788444681867e-14!GO:0044257;cellular protein catabolic process;3.67157220089009e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.08703503771294e-14!GO:0003954;NADH dehydrogenase activity;4.08703503771294e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.08703503771294e-14!GO:0044265;cellular macromolecule catabolic process;4.64585051622693e-14!GO:0048193;Golgi vesicle transport;6.741079200629e-14!GO:0048770;pigment granule;8.02299302447316e-14!GO:0042470;melanosome;8.02299302447316e-14!GO:0005761;mitochondrial ribosome;8.79551050883706e-14!GO:0000313;organellar ribosome;8.79551050883706e-14!GO:0016604;nuclear body;1.37338833788567e-13!GO:0051082;unfolded protein binding;1.44383876748222e-13!GO:0005783;endoplasmic reticulum;2.6113717301779e-13!GO:0004386;helicase activity;3.25954013668571e-13!GO:0008135;translation factor activity, nucleic acid binding;3.92999845608649e-13!GO:0050794;regulation of cellular process;5.14870431353253e-13!GO:0043412;biopolymer modification;5.37127142116871e-13!GO:0042254;ribosome biogenesis and assembly;5.95589057545114e-13!GO:0051186;cofactor metabolic process;7.13212340038724e-13!GO:0009057;macromolecule catabolic process;8.09555684549012e-13!GO:0006913;nucleocytoplasmic transport;8.13074108988242e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.60126344826312e-13!GO:0044248;cellular catabolic process;1.19118780003695e-12!GO:0044453;nuclear membrane part;1.49968104704189e-12!GO:0003712;transcription cofactor activity;1.8348571069682e-12!GO:0016192;vesicle-mediated transport;2.06896674521893e-12!GO:0006366;transcription from RNA polymerase II promoter;2.09424772545675e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.50207800297697e-12!GO:0051169;nuclear transport;2.96599507505658e-12!GO:0030163;protein catabolic process;3.37671135983349e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.38639471354849e-12!GO:0042773;ATP synthesis coupled electron transport;4.38639471354849e-12!GO:0005794;Golgi apparatus;4.88830784055451e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.92390607078637e-12!GO:0045271;respiratory chain complex I;4.92390607078637e-12!GO:0005747;mitochondrial respiratory chain complex I;4.92390607078637e-12!GO:0008026;ATP-dependent helicase activity;6.03619384545342e-12!GO:0031965;nuclear membrane;6.43620543547781e-12!GO:0051726;regulation of cell cycle;6.51978125702513e-12!GO:0000074;regulation of progression through cell cycle;7.22730830042564e-12!GO:0005635;nuclear envelope;7.82165755564259e-12!GO:0008639;small protein conjugating enzyme activity;8.88170449068572e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.48950972626219e-11!GO:0012501;programmed cell death;2.07468468291809e-11!GO:0004842;ubiquitin-protein ligase activity;2.67950369011552e-11!GO:0044432;endoplasmic reticulum part;2.82152120613425e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.00057718973054e-11!GO:0006915;apoptosis;4.38110785010834e-11!GO:0006464;protein modification process;5.07984528123475e-11!GO:0015630;microtubule cytoskeleton;6.50337133511707e-11!GO:0000785;chromatin;7.53154151703569e-11!GO:0019787;small conjugating protein ligase activity;9.08643849849461e-11!GO:0043687;post-translational protein modification;9.15062724524315e-11!GO:0006399;tRNA metabolic process;9.30688642415796e-11!GO:0005643;nuclear pore;1.50899354011483e-10!GO:0016607;nuclear speck;1.95343070396356e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.27240776530184e-10!GO:0008219;cell death;2.91412418164184e-10!GO:0016265;death;2.91412418164184e-10!GO:0006333;chromatin assembly or disassembly;2.97909123255628e-10!GO:0003743;translation initiation factor activity;7.41989250332606e-10!GO:0006403;RNA localization;1.09112620080618e-09!GO:0050657;nucleic acid transport;1.18224753403013e-09!GO:0051236;establishment of RNA localization;1.18224753403013e-09!GO:0050658;RNA transport;1.18224753403013e-09!GO:0006732;coenzyme metabolic process;1.31922659168021e-09!GO:0043566;structure-specific DNA binding;1.90078294654367e-09!GO:0016568;chromatin modification;1.95628686065377e-09!GO:0009259;ribonucleotide metabolic process;2.20367056535997e-09!GO:0006413;translational initiation;2.30281705116195e-09!GO:0046930;pore complex;2.39139773927065e-09!GO:0050789;regulation of biological process;2.89533090082094e-09!GO:0016881;acid-amino acid ligase activity;3.27142103598781e-09!GO:0006163;purine nucleotide metabolic process;3.33972070556349e-09!GO:0006261;DNA-dependent DNA replication;4.35562395126431e-09!GO:0006446;regulation of translational initiation;4.53023692498554e-09!GO:0006364;rRNA processing;4.96257092563019e-09!GO:0065002;intracellular protein transport across a membrane;5.66560102339286e-09!GO:0006461;protein complex assembly;6.57189897766898e-09!GO:0006164;purine nucleotide biosynthetic process;6.90380880687948e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.16328045311984e-09!GO:0004812;aminoacyl-tRNA ligase activity;7.16328045311984e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.16328045311984e-09!GO:0005819;spindle;7.18076829828572e-09!GO:0065004;protein-DNA complex assembly;7.44080252080708e-09!GO:0005793;ER-Golgi intermediate compartment;9.52337627315171e-09!GO:0009260;ribonucleotide biosynthetic process;9.72028476624754e-09!GO:0009055;electron carrier activity;9.77701189352696e-09!GO:0016072;rRNA metabolic process;1.034898398551e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04113368384851e-08!GO:0017038;protein import;1.17919211584544e-08!GO:0048523;negative regulation of cellular process;1.24844000177302e-08!GO:0000775;chromosome, pericentric region;1.44847537436129e-08!GO:0043038;amino acid activation;1.44847537436129e-08!GO:0006418;tRNA aminoacylation for protein translation;1.44847537436129e-08!GO:0043039;tRNA aminoacylation;1.44847537436129e-08!GO:0009150;purine ribonucleotide metabolic process;1.53576466582003e-08!GO:0016779;nucleotidyltransferase activity;2.29265351266367e-08!GO:0008565;protein transporter activity;2.74328787040984e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.15620963357487e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.19829355570217e-08!GO:0005667;transcription factor complex;4.89226891160283e-08!GO:0019222;regulation of metabolic process;5.15082285027013e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.72965740748715e-08!GO:0032446;protein modification by small protein conjugation;5.76984176727487e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.44383751053188e-08!GO:0003697;single-stranded DNA binding;6.80898788392311e-08!GO:0051028;mRNA transport;7.90122332191174e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.20952297519007e-08!GO:0000245;spliceosome assembly;8.57092951440747e-08!GO:0009141;nucleoside triphosphate metabolic process;8.72544831287532e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.38812065246911e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.38812065246911e-08!GO:0009060;aerobic respiration;1.09505090039329e-07!GO:0000151;ubiquitin ligase complex;1.1344251770777e-07!GO:0016567;protein ubiquitination;1.23897463602976e-07!GO:0005813;centrosome;1.57891407831785e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.57891407831785e-07!GO:0005789;endoplasmic reticulum membrane;2.41681530967875e-07!GO:0016563;transcription activator activity;2.56370660343738e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.58425863947562e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.58425863947562e-07!GO:0003682;chromatin binding;3.05766977157435e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.08257896793297e-07!GO:0005815;microtubule organizing center;3.43304604815972e-07!GO:0030120;vesicle coat;3.46341127216422e-07!GO:0030662;coated vesicle membrane;3.46341127216422e-07!GO:0019829;cation-transporting ATPase activity;3.50109518535109e-07!GO:0015986;ATP synthesis coupled proton transport;3.52726399849468e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.52726399849468e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.76399517324028e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.76399517324028e-07!GO:0048519;negative regulation of biological process;4.18543304562916e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.23319397899744e-07!GO:0007051;spindle organization and biogenesis;6.86600872387365e-07!GO:0009056;catabolic process;7.07556234991341e-07!GO:0009117;nucleotide metabolic process;7.61826706474053e-07!GO:0051188;cofactor biosynthetic process;7.62557307925039e-07!GO:0046034;ATP metabolic process;7.71463417713471e-07!GO:0008094;DNA-dependent ATPase activity;8.39457258502854e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.43796381997256e-07!GO:0003714;transcription corepressor activity;9.26102892508522e-07!GO:0051325;interphase;1.13739787747633e-06!GO:0043067;regulation of programmed cell death;1.16385188751424e-06!GO:0051246;regulation of protein metabolic process;1.21110423288342e-06!GO:0031324;negative regulation of cellular metabolic process;1.22531934662636e-06!GO:0016787;hydrolase activity;1.2397563748195e-06!GO:0031497;chromatin assembly;1.2410936917944e-06!GO:0042981;regulation of apoptosis;1.27677987173088e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.52640436788294e-06!GO:0006334;nucleosome assembly;1.64385343184603e-06!GO:0045333;cellular respiration;1.64737931682229e-06!GO:0051170;nuclear import;1.64737931682229e-06!GO:0005788;endoplasmic reticulum lumen;1.9370321311947e-06!GO:0048475;coated membrane;1.93938684514042e-06!GO:0030117;membrane coat;1.93938684514042e-06!GO:0007005;mitochondrion organization and biogenesis;2.05281852569519e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.51745002713796e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.51745002713796e-06!GO:0019899;enzyme binding;2.52125619414303e-06!GO:0005768;endosome;2.60033940836798e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.7397375502591e-06!GO:0006754;ATP biosynthetic process;2.7397375502591e-06!GO:0006753;nucleoside phosphate metabolic process;2.7397375502591e-06!GO:0006606;protein import into nucleus;3.44466311451804e-06!GO:0000075;cell cycle checkpoint;3.44623066549713e-06!GO:0051329;interphase of mitotic cell cycle;3.50742857789759e-06!GO:0003724;RNA helicase activity;3.65021408693874e-06!GO:0006099;tricarboxylic acid cycle;4.0657936089333e-06!GO:0046356;acetyl-CoA catabolic process;4.0657936089333e-06!GO:0045259;proton-transporting ATP synthase complex;4.2314100254413e-06!GO:0003899;DNA-directed RNA polymerase activity;4.49789206436753e-06!GO:0006793;phosphorus metabolic process;4.92086561307787e-06!GO:0006796;phosphate metabolic process;4.92086561307787e-06!GO:0043623;cellular protein complex assembly;5.12034137728808e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.40391387571274e-06!GO:0007010;cytoskeleton organization and biogenesis;5.75999484558936e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.16733136038325e-06!GO:0016740;transferase activity;7.85751405248701e-06!GO:0009109;coenzyme catabolic process;8.13280532579176e-06!GO:0045786;negative regulation of progression through cell cycle;9.26970764934812e-06!GO:0003713;transcription coactivator activity;1.01982018559096e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.02436378971036e-05!GO:0051427;hormone receptor binding;1.05281614979983e-05!GO:0006084;acetyl-CoA metabolic process;1.12810275931342e-05!GO:0016564;transcription repressor activity;1.14990167200702e-05!GO:0006752;group transfer coenzyme metabolic process;1.15416956461241e-05!GO:0051187;cofactor catabolic process;1.18476738672301e-05!GO:0031252;leading edge;1.37289859600587e-05!GO:0016481;negative regulation of transcription;1.42228234558979e-05!GO:0009892;negative regulation of metabolic process;1.43294889736848e-05!GO:0031323;regulation of cellular metabolic process;1.46775873432264e-05!GO:0051168;nuclear export;1.47068135457841e-05!GO:0065007;biological regulation;1.63080658179855e-05!GO:0003924;GTPase activity;1.652025001519e-05!GO:0003684;damaged DNA binding;1.69687677676706e-05!GO:0003690;double-stranded DNA binding;2.07429064824184e-05!GO:0005762;mitochondrial large ribosomal subunit;2.27536812385316e-05!GO:0000315;organellar large ribosomal subunit;2.27536812385316e-05!GO:0035257;nuclear hormone receptor binding;2.30776257001619e-05!GO:0005657;replication fork;2.30892859496194e-05!GO:0009108;coenzyme biosynthetic process;2.40529821957385e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.5244482753234e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.6735363875399e-05!GO:0004298;threonine endopeptidase activity;3.54179014018857e-05!GO:0000314;organellar small ribosomal subunit;3.88596122282113e-05!GO:0005763;mitochondrial small ribosomal subunit;3.88596122282113e-05!GO:0043069;negative regulation of programmed cell death;3.899780936792e-05!GO:0006350;transcription;4.02928740180321e-05!GO:0016310;phosphorylation;4.71857435032659e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.52131016945337e-05!GO:0006383;transcription from RNA polymerase III promoter;5.71920599110857e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.987099668245e-05!GO:0043066;negative regulation of apoptosis;6.46082550407188e-05!GO:0006613;cotranslational protein targeting to membrane;7.20276895065476e-05!GO:0005874;microtubule;7.39011982882389e-05!GO:0000776;kinetochore;8.73496182713761e-05!GO:0006916;anti-apoptosis;9.42709067002272e-05!GO:0005798;Golgi-associated vesicle;9.71813016552883e-05!GO:0008186;RNA-dependent ATPase activity;9.82145355319229e-05!GO:0016491;oxidoreductase activity;9.91375987847909e-05!GO:0006302;double-strand break repair;0.000122891108560311!GO:0003729;mRNA binding;0.000164279219555283!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000167090213980451!GO:0048522;positive regulation of cellular process;0.000190958186313929!GO:0045454;cell redox homeostasis;0.000201949503699607!GO:0006284;base-excision repair;0.00024511867300118!GO:0042802;identical protein binding;0.000253606440269844!GO:0005770;late endosome;0.00025584154563454!GO:0043021;ribonucleoprotein binding;0.000257051134189256!GO:0003678;DNA helicase activity;0.000265397479877614!GO:0031988;membrane-bound vesicle;0.000265397479877614!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000267722219484473!GO:0016023;cytoplasmic membrane-bound vesicle;0.000274944643338018!GO:0051789;response to protein stimulus;0.000274944643338018!GO:0006986;response to unfolded protein;0.000274944643338018!GO:0006310;DNA recombination;0.000280617489499482!GO:0016853;isomerase activity;0.000280640860028979!GO:0008092;cytoskeletal protein binding;0.000284104322793251!GO:0009165;nucleotide biosynthetic process;0.000285556706913549!GO:0044431;Golgi apparatus part;0.000285854674041902!GO:0044440;endosomal part;0.000293818842794474!GO:0010008;endosome membrane;0.000293818842794474!GO:0004004;ATP-dependent RNA helicase activity;0.000294642382699146!GO:0030867;rough endoplasmic reticulum membrane;0.000296558893216223!GO:0010468;regulation of gene expression;0.000318423735703308!GO:0005905;coated pit;0.000325018762292285!GO:0005769;early endosome;0.000347912805480819!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000354914237309418!GO:0005048;signal sequence binding;0.00036794495293371!GO:0016363;nuclear matrix;0.000397071867750142!GO:0007059;chromosome segregation;0.000407566279101765!GO:0016197;endosome transport;0.000413139805215214!GO:0016859;cis-trans isomerase activity;0.00044484223916383!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000450801148024382!GO:0030036;actin cytoskeleton organization and biogenesis;0.000457910411746204!GO:0051052;regulation of DNA metabolic process;0.000497035257993025!GO:0051252;regulation of RNA metabolic process;0.000538566772310297!GO:0044452;nucleolar part;0.000554276592337833!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000606236903703407!GO:0007052;mitotic spindle organization and biogenesis;0.000607227907206452!GO:0005885;Arp2/3 protein complex;0.000612854882183111!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000625469225798305!GO:0032508;DNA duplex unwinding;0.000665586012889467!GO:0032392;DNA geometric change;0.000665586012889467!GO:0008022;protein C-terminus binding;0.000666585886812892!GO:0031968;organelle outer membrane;0.000754598938233155!GO:0031072;heat shock protein binding;0.000783752901122355!GO:0006091;generation of precursor metabolites and energy;0.000789952537676507!GO:0016126;sterol biosynthetic process;0.000803093331920885!GO:0019867;outer membrane;0.000822484087805943!GO:0008361;regulation of cell size;0.000832566829733974!GO:0008033;tRNA processing;0.000909742496293432!GO:0000059;protein import into nucleus, docking;0.000941416547569055!GO:0006289;nucleotide-excision repair;0.000985868367877357!GO:0007243;protein kinase cascade;0.00100218380541032!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00101393992914832!GO:0015399;primary active transmembrane transporter activity;0.00101393992914832!GO:0006402;mRNA catabolic process;0.00103284191268768!GO:0030880;RNA polymerase complex;0.00104478384532513!GO:0007088;regulation of mitosis;0.00104488602427681!GO:0016049;cell growth;0.00106232345352193!GO:0031982;vesicle;0.00108001817395815!GO:0008654;phospholipid biosynthetic process;0.00111461525225035!GO:0043681;protein import into mitochondrion;0.0011292542637288!GO:0048471;perinuclear region of cytoplasm;0.00113834683557385!GO:0035258;steroid hormone receptor binding;0.00117766694444938!GO:0030132;clathrin coat of coated pit;0.00118213564905714!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0011934940836661!GO:0006839;mitochondrial transport;0.00122369999317996!GO:0015980;energy derivation by oxidation of organic compounds;0.0012242161666872!GO:0008139;nuclear localization sequence binding;0.00131643088630668!GO:0051287;NAD binding;0.00133769660768585!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00137192395690346!GO:0031410;cytoplasmic vesicle;0.00137777265512448!GO:0045941;positive regulation of transcription;0.00138539657349085!GO:0006268;DNA unwinding during replication;0.0014839316083521!GO:0005525;GTP binding;0.00150294867645421!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00152526303243689!GO:0006626;protein targeting to mitochondrion;0.00154552175325574!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154552175325574!GO:0007093;mitotic cell cycle checkpoint;0.00154552175325574!GO:0045892;negative regulation of transcription, DNA-dependent;0.00172811782651709!GO:0000792;heterochromatin;0.00177624699956211!GO:0032774;RNA biosynthetic process;0.00184544411553037!GO:0043284;biopolymer biosynthetic process;0.00190552818517152!GO:0005791;rough endoplasmic reticulum;0.0019439404536594!GO:0046483;heterocycle metabolic process;0.0019982358235647!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00206875975462479!GO:0045893;positive regulation of transcription, DNA-dependent;0.00211422053700267!GO:0004674;protein serine/threonine kinase activity;0.00212146195725757!GO:0005876;spindle microtubule;0.00214646852851478!GO:0005741;mitochondrial outer membrane;0.00217124142613843!GO:0001558;regulation of cell growth;0.00220748294736924!GO:0006351;transcription, DNA-dependent;0.00220748294736924!GO:0006414;translational elongation;0.00221390426272788!GO:0008168;methyltransferase activity;0.00232745147637259!GO:0006611;protein export from nucleus;0.00236967208315514!GO:0007017;microtubule-based process;0.00244008909860316!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00246748161992123!GO:0000428;DNA-directed RNA polymerase complex;0.00246748161992123!GO:0030663;COPI coated vesicle membrane;0.00246748161992123!GO:0030126;COPI vesicle coat;0.00246748161992123!GO:0016741;transferase activity, transferring one-carbon groups;0.00248239976855667!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00262371282569434!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00262371282569434!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00262371282569434!GO:0006405;RNA export from nucleus;0.00274606902899738!GO:0003711;transcription elongation regulator activity;0.00282083168762865!GO:0008250;oligosaccharyl transferase complex;0.00282083168762865!GO:0005684;U2-dependent spliceosome;0.00284244261405113!GO:0006612;protein targeting to membrane;0.00284844313763104!GO:0030029;actin filament-based process;0.00285223524313752!GO:0030133;transport vesicle;0.00290664458082132!GO:0006695;cholesterol biosynthetic process;0.00296555796738121!GO:0006270;DNA replication initiation;0.00301364692966!GO:0065009;regulation of a molecular function;0.00302782128790148!GO:0000082;G1/S transition of mitotic cell cycle;0.00311003254573449!GO:0019206;nucleoside kinase activity;0.00315212818631974!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00318707606967207!GO:0017166;vinculin binding;0.00321538001996096!GO:0000139;Golgi membrane;0.00321538001996096!GO:0032200;telomere organization and biogenesis;0.00322094433217772!GO:0000723;telomere maintenance;0.00322094433217772!GO:0006401;RNA catabolic process;0.00327021407020637!GO:0030137;COPI-coated vesicle;0.00333923945066739!GO:0016272;prefoldin complex;0.00350071832488165!GO:0006892;post-Golgi vesicle-mediated transport;0.00350071832488165!GO:0030521;androgen receptor signaling pathway;0.00350071832488165!GO:0016044;membrane organization and biogenesis;0.00355693099904441!GO:0030658;transport vesicle membrane;0.00356801240599482!GO:0006352;transcription initiation;0.00358162754582108!GO:0000049;tRNA binding;0.00359207815858106!GO:0005096;GTPase activator activity;0.00363193864456895!GO:0033116;ER-Golgi intermediate compartment membrane;0.00382741765540998!GO:0019843;rRNA binding;0.00393154854747397!GO:0051087;chaperone binding;0.00399435002322097!GO:0008047;enzyme activator activity;0.00410101514834896!GO:0033673;negative regulation of kinase activity;0.00417234956141751!GO:0006469;negative regulation of protein kinase activity;0.00417234956141751!GO:0003702;RNA polymerase II transcription factor activity;0.00418528647087292!GO:0043492;ATPase activity, coupled to movement of substances;0.00423342446024812!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00431693563607567!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00431693563607567!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00449398620673583!GO:0006950;response to stress;0.00450806224460169!GO:0009116;nucleoside metabolic process;0.00454111614363459!GO:0047485;protein N-terminus binding;0.00455990679382866!GO:0030027;lamellipodium;0.0045685027887709!GO:0006338;chromatin remodeling;0.00478165218145277!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00505771201485498!GO:0045449;regulation of transcription;0.0051039119084088!GO:0001726;ruffle;0.00538580492845911!GO:0004003;ATP-dependent DNA helicase activity;0.00541719407034841!GO:0032561;guanyl ribonucleotide binding;0.00541719407034841!GO:0019001;guanyl nucleotide binding;0.00541719407034841!GO:0018196;peptidyl-asparagine modification;0.00549937494847583!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00549937494847583!GO:0004576;oligosaccharyl transferase activity;0.00569273688897952!GO:0004527;exonuclease activity;0.0057440741141265!GO:0051348;negative regulation of transferase activity;0.00577354059745658!GO:0030134;ER to Golgi transport vesicle;0.00579493376660978!GO:0006818;hydrogen transport;0.00602414576389159!GO:0006891;intra-Golgi vesicle-mediated transport;0.00617161959096395!GO:0046983;protein dimerization activity;0.00619874596370255!GO:0040029;regulation of gene expression, epigenetic;0.00630026295614505!GO:0048487;beta-tubulin binding;0.00636509514137892!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00642406569330835!GO:0000786;nucleosome;0.00644805387852172!GO:0048500;signal recognition particle;0.00649277988086946!GO:0006275;regulation of DNA replication;0.00651196756533786!GO:0006220;pyrimidine nucleotide metabolic process;0.00663578765161146!GO:0050681;androgen receptor binding;0.00663578765161146!GO:0043488;regulation of mRNA stability;0.00663819393287091!GO:0043487;regulation of RNA stability;0.00663819393287091!GO:0030660;Golgi-associated vesicle membrane;0.00665368522777468!GO:0009112;nucleobase metabolic process;0.00669513600490545!GO:0007264;small GTPase mediated signal transduction;0.00669513600490545!GO:0015992;proton transport;0.00680508378863087!GO:0000922;spindle pole;0.00695890798810381!GO:0030127;COPII vesicle coat;0.00695890798810381!GO:0012507;ER to Golgi transport vesicle membrane;0.00695890798810381!GO:0031124;mRNA 3'-end processing;0.00718283433210378!GO:0005637;nuclear inner membrane;0.00721964126419339!GO:0016125;sterol metabolic process;0.00731183724303367!GO:0007006;mitochondrial membrane organization and biogenesis;0.00740617542186621!GO:0007030;Golgi organization and biogenesis;0.007493576999563!GO:0003746;translation elongation factor activity;0.00770826605411016!GO:0051540;metal cluster binding;0.00770826605411016!GO:0051536;iron-sulfur cluster binding;0.00770826605411016!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00771908032634534!GO:0005862;muscle thin filament tropomyosin;0.00797555584035898!GO:0007265;Ras protein signal transduction;0.00812839166197402!GO:0031570;DNA integrity checkpoint;0.00825989348887389!GO:0015631;tubulin binding;0.00834003430121795!GO:0030518;steroid hormone receptor signaling pathway;0.0086977269754427!GO:0022890;inorganic cation transmembrane transporter activity;0.00886002256399626!GO:0008287;protein serine/threonine phosphatase complex;0.00886380272209562!GO:0048518;positive regulation of biological process;0.00890904727398147!GO:0000781;chromosome, telomeric region;0.00892246670619555!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00948898625504226!GO:0031529;ruffle organization and biogenesis;0.0099997058088411!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0099997058088411!GO:0015002;heme-copper terminal oxidase activity;0.0099997058088411!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0099997058088411!GO:0004129;cytochrome-c oxidase activity;0.0099997058088411!GO:0016584;nucleosome positioning;0.0099997058088411!GO:0043624;cellular protein complex disassembly;0.010136410818142!GO:0043596;nuclear replication fork;0.0102813619791307!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0104084572460034!GO:0005083;small GTPase regulator activity;0.0106510257518126!GO:0003677;DNA binding;0.0109667092047764!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0111494842625182!GO:0040008;regulation of growth;0.0113913974578068!GO:0042770;DNA damage response, signal transduction;0.0116297041083948!GO:0043414;biopolymer methylation;0.0118072560469014!GO:0030118;clathrin coat;0.0127537435682289!GO:0008632;apoptotic program;0.0127904885973599!GO:0046474;glycerophospholipid biosynthetic process;0.0138766737366244!GO:0045045;secretory pathway;0.0145574833389876!GO:0051539;4 iron, 4 sulfur cluster binding;0.0146617737775674!GO:0043022;ribosome binding;0.0147482007978034!GO:0000725;recombinational repair;0.0153292657812323!GO:0000724;double-strand break repair via homologous recombination;0.0153292657812323!GO:0050662;coenzyme binding;0.0155002416414817!GO:0031123;RNA 3'-end processing;0.0155148629695819!GO:0005856;cytoskeleton;0.0155148629695819!GO:0005099;Ras GTPase activator activity;0.0156394363148593!GO:0007021;tubulin folding;0.0156766249191424!GO:0006144;purine base metabolic process;0.0161991509154023!GO:0048468;cell development;0.0162048888554464!GO:0008601;protein phosphatase type 2A regulator activity;0.0163815552933374!GO:0030496;midbody;0.0164236360388353!GO:0009081;branched chain family amino acid metabolic process;0.0167048314523356!GO:0030659;cytoplasmic vesicle membrane;0.0168061524047386!GO:0005773;vacuole;0.0168422517795539!GO:0022415;viral reproductive process;0.0168763511774664!GO:0000910;cytokinesis;0.0174144248103442!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0183327105453378!GO:0000287;magnesium ion binding;0.0187271436892721!GO:0008312;7S RNA binding;0.0187915141364498!GO:0043407;negative regulation of MAP kinase activity;0.0189084222123547!GO:0016251;general RNA polymerase II transcription factor activity;0.0189337154914036!GO:0043189;H4/H2A histone acetyltransferase complex;0.0190155799785015!GO:0050790;regulation of catalytic activity;0.0194663065137658!GO:0031901;early endosome membrane;0.0194959702397147!GO:0006354;RNA elongation;0.0195012877452681!GO:0006509;membrane protein ectodomain proteolysis;0.0195461588411206!GO:0033619;membrane protein proteolysis;0.0195461588411206!GO:0031625;ubiquitin protein ligase binding;0.0195461588411206!GO:0005832;chaperonin-containing T-complex;0.0197107874421229!GO:0016408;C-acyltransferase activity;0.0200133392219315!GO:0044433;cytoplasmic vesicle part;0.0201410498970518!GO:0004177;aminopeptidase activity;0.0203064953072998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0203285071195898!GO:0045047;protein targeting to ER;0.0203285071195898!GO:0000159;protein phosphatase type 2A complex;0.0203285071195898!GO:0004518;nuclease activity;0.0203896305617095!GO:0000339;RNA cap binding;0.0214854158639707!GO:0032984;macromolecular complex disassembly;0.0218311803067392!GO:0005869;dynactin complex;0.0223457069891078!GO:0032259;methylation;0.0230079026961299!GO:0000152;nuclear ubiquitin ligase complex;0.0230323709316937!GO:0008629;induction of apoptosis by intracellular signals;0.0230394086692975!GO:0050750;low-density lipoprotein receptor binding;0.0233166004108583!GO:0000070;mitotic sister chromatid segregation;0.0234928282335321!GO:0043065;positive regulation of apoptosis;0.0237308863557637!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0239323133877201!GO:0030522;intracellular receptor-mediated signaling pathway;0.0240222432866106!GO:0008243;plasminogen activator activity;0.0243801463490068!GO:0016301;kinase activity;0.0247129730732031!GO:0008180;signalosome;0.0247129730732031!GO:0030032;lamellipodium biogenesis;0.0247732604851236!GO:0005938;cell cortex;0.0250871659323735!GO:0003779;actin binding;0.0253649976322612!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0253951041011323!GO:0043241;protein complex disassembly;0.0253951041011323!GO:0030125;clathrin vesicle coat;0.0254857037559717!GO:0030665;clathrin coated vesicle membrane;0.0254857037559717!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0256427874573726!GO:0006595;polyamine metabolic process;0.0257071613231893!GO:0030119;AP-type membrane coat adaptor complex;0.0257071613231893!GO:0051320;S phase;0.0260730063286991!GO:0006376;mRNA splice site selection;0.0260730063286991!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0260730063286991!GO:0043068;positive regulation of programmed cell death;0.0265060935888786!GO:0000819;sister chromatid segregation;0.0268349426741158!GO:0000077;DNA damage checkpoint;0.0269937393535098!GO:0000118;histone deacetylase complex;0.0271963511566976!GO:0000209;protein polyubiquitination;0.027396462063252!GO:0007004;telomere maintenance via telomerase;0.0278189972743782!GO:0030695;GTPase regulator activity;0.0280507932245006!GO:0005100;Rho GTPase activator activity;0.0280995114714605!GO:0016585;chromatin remodeling complex;0.0281153574686551!GO:0019752;carboxylic acid metabolic process;0.0281954129700366!GO:0043130;ubiquitin binding;0.0281954129700366!GO:0032182;small conjugating protein binding;0.0281954129700366!GO:0042769;DNA damage response, detection of DNA damage;0.0285098734010387!GO:0030911;TPR domain binding;0.0285974587027711!GO:0009262;deoxyribonucleotide metabolic process;0.0286964875008512!GO:0001832;blastocyst growth;0.0291171534369704!GO:0007346;regulation of progression through mitotic cell cycle;0.0295731759467721!GO:0009303;rRNA transcription;0.0297802828833979!GO:0035035;histone acetyltransferase binding;0.0308079264414135!GO:0035267;NuA4 histone acetyltransferase complex;0.0308079264414135!GO:0030176;integral to endoplasmic reticulum membrane;0.0308358451503038!GO:0016407;acetyltransferase activity;0.0316005646341904!GO:0000228;nuclear chromosome;0.0316005646341904!GO:0030131;clathrin adaptor complex;0.0316074236428414!GO:0006082;organic acid metabolic process;0.0317538540961544!GO:0006355;regulation of transcription, DNA-dependent;0.0319219280886416!GO:0012506;vesicle membrane;0.0319219280886416!GO:0006607;NLS-bearing substrate import into nucleus;0.0327456420919529!GO:0051098;regulation of binding;0.0332121327589133!GO:0051101;regulation of DNA binding;0.0332121327589133!GO:0033559;unsaturated fatty acid metabolic process;0.0332926368829621!GO:0006636;unsaturated fatty acid biosynthetic process;0.0332926368829621!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0338427223309348!GO:0046966;thyroid hormone receptor binding;0.0338427223309348!GO:0016791;phosphoric monoester hydrolase activity;0.0338427223309348!GO:0006378;mRNA polyadenylation;0.0338427223309348!GO:0051128;regulation of cellular component organization and biogenesis;0.0338427223309348!GO:0006360;transcription from RNA polymerase I promoter;0.0341200687810452!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0341200687810452!GO:0009967;positive regulation of signal transduction;0.0343323737910283!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0343323737910283!GO:0008538;proteasome activator activity;0.0349969717502825!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0356164191271289!GO:0031371;ubiquitin conjugating enzyme complex;0.0363927770698678!GO:0009893;positive regulation of metabolic process;0.0364366502757725!GO:0000323;lytic vacuole;0.0371207429129464!GO:0005764;lysosome;0.0371207429129464!GO:0006520;amino acid metabolic process;0.0371309351759388!GO:0005669;transcription factor TFIID complex;0.0373344173709795!GO:0016311;dephosphorylation;0.0375312389059672!GO:0000123;histone acetyltransferase complex;0.0375312389059672!GO:0008203;cholesterol metabolic process;0.0378966334686076!GO:0008610;lipid biosynthetic process;0.0387703956589513!GO:0050178;phenylpyruvate tautomerase activity;0.0391720849888134!GO:0003887;DNA-directed DNA polymerase activity;0.0392219518250439!GO:0030128;clathrin coat of endocytic vesicle;0.0393659264926467!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0393659264926467!GO:0030122;AP-2 adaptor complex;0.0393659264926467!GO:0006740;NADPH regeneration;0.0395326417670267!GO:0006098;pentose-phosphate shunt;0.0395326417670267!GO:0007050;cell cycle arrest;0.0395411249920639!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0399765062339651!GO:0043601;nuclear replisome;0.0400763417476796!GO:0030894;replisome;0.0400763417476796!GO:0005784;translocon complex;0.0402518975797709!GO:0046489;phosphoinositide biosynthetic process;0.04054572980576!GO:0032906;transforming growth factor-beta2 production;0.041677788847377!GO:0032909;regulation of transforming growth factor-beta2 production;0.041677788847377!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.041677788847377!GO:0006672;ceramide metabolic process;0.0423972746176078!GO:0004239;methionyl aminopeptidase activity;0.0424012722811723!GO:0006778;porphyrin metabolic process;0.0428679811561572!GO:0033013;tetrapyrrole metabolic process;0.0428679811561572!GO:0006308;DNA catabolic process;0.0428884524765896!GO:0043087;regulation of GTPase activity;0.0431222749679758!GO:0006650;glycerophospholipid metabolic process;0.0437056325061575!GO:0022411;cellular component disassembly;0.0437056325061575!GO:0043086;negative regulation of catalytic activity;0.0437056325061575!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0443038622685038!GO:0042393;histone binding;0.0454160997083822!GO:0044262;cellular carbohydrate metabolic process;0.0454474106939114!GO:0030508;thiol-disulfide exchange intermediate activity;0.046071688861466!GO:0004722;protein serine/threonine phosphatase activity;0.0461098896569579!GO:0008017;microtubule binding;0.0465580460803083!GO:0006406;mRNA export from nucleus;0.0477916032604888!GO:0004523;ribonuclease H activity;0.0478164091505235!GO:0045334;clathrin-coated endocytic vesicle;0.0482495466513217!GO:0017134;fibroblast growth factor binding;0.0482495466513217!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0491328797600257!GO:0005875;microtubule associated complex;0.0492729210972628!GO:0044450;microtubule organizing center part;0.0495129351667407!GO:0006779;porphyrin biosynthetic process;0.0496683828341306!GO:0033014;tetrapyrrole biosynthetic process;0.0496683828341306!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0497572722335554!GO:0046519;sphingoid metabolic process;0.049994415254732!GO:0031577;spindle checkpoint;0.049994415254732 | |||
|sample_id=10600 | |sample_id=10600 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=ANATOMICAL SYSTEM | |sample_tissue=ANATOMICAL SYSTEM | ||
|top_motifs=HOXA9_MEIS1:1.13805049519;TFDP1:1.08349565025;VSX1,2:1.05043299501;GFI1:0.915120739548;NR3C1:0.9057280311;E2F1..5:0.887857579673;STAT5{A,B}:0.877274992858;PPARG:0.871180123358;TEAD1:0.797764593599;PAX3,7:0.761988886589;ADNP_IRX_SIX_ZHX:0.744215423929;PBX1:0.740570106435;FOX{I1,J2}:0.732821019813;ONECUT1,2:0.722795452982;PAX6:0.718015437731;ZNF143:0.696228547775;ZNF384:0.682946144759;POU1F1:0.635643451646;POU3F1..4:0.604168440162;HMGA1,2:0.576823776311;GLI1..3:0.573780286151;POU5F1:0.56234782179;AIRE:0.520380582754;NFY{A,B,C}:0.519178122901;LEF1_TCF7_TCF7L1,2:0.501757927488;HOX{A5,B5}:0.49956643703;SOX17:0.483566999182;TAL1_TCF{3,4,12}:0.478770819126;MYB:0.466418269187;GATA4:0.443430831695;FOXD3:0.429888020222;NKX2-3_NKX2-5:0.424433593545;EN1,2:0.418035442352;HMX1:0.405583154039;MZF1:0.397800615422;SRF:0.390460340065;LHX3,4:0.388375191409;ZNF148:0.359631491863;PAX8:0.350905613036;GTF2A1,2:0.340007969752;PITX1..3:0.338558069933;RORA:0.333848212987;NKX6-1,2:0.314944109462;BREu{core}:0.310308130001;FOS_FOS{B,L1}_JUN{B,D}:0.306478539732;IKZF2:0.291483465475;MAZ:0.287161580799;TFAP2B:0.285504865816;EGR1..3:0.259600925206;MED-1{core}:0.240018878915;FOXA2:0.223989099921;OCT4_SOX2{dimer}:0.219530444073;GTF2I:0.211888979073;NRF1:0.211169471223;HOX{A4,D4}:0.199031084444;CUX2:0.197884589731;GFI1B:0.185014346387;ELK1,4_GABP{A,B1}:0.170697613958;PRDM1:0.156907850206;NFATC1..3:0.156206968742;POU6F1:0.137249750734;BACH2:0.136296821041;NANOG:0.133545697362;GCM1,2:0.131564684814;AHR_ARNT_ARNT2:0.119093599893;NFE2:0.114716699055;SOX5:0.111132039438;MAFB:0.108851142085;PAX1,9:0.100223527273;POU2F1..3:0.0997615777777;NR6A1:0.0887382293025;TLX1..3_NFIC{dimer}:0.0846955207243;HLF:0.080371073168;PRRX1,2:0.0551385292427;ZBTB16:0.0509906078151;CRX:0.0490769701155;TFAP4:0.0437859384286;FOSL2:0.0248533074365;NFE2L1:0.024571046635;FOXQ1:0.0240884349836;SOX{8,9,10}:0.0223270709647;HSF1,2:0.0204414784146;ZFP161:0.0199805071182;bHLH_family:0.0194865484358;HIC1:0.0193684737431;GZF1:-0.00221449699342;GATA6:-0.0287203640972;TP53:-0.033071224261;DBP:-0.0331147206143;SP1:-0.0437081992571;CEBPA,B_DDIT3:-0.050723324408;MYBL2:-0.0536834897172;MTF1:-0.0709687307452;FOXO1,3,4:-0.071810892101;SPZ1:-0.0934595635508;HNF1A:-0.097618496925;NFE2L2:-0.0993585835902;TFAP2{A,C}:-0.100535597549;ZBTB6:-0.104665645895;EVI1:-0.113851137083;RBPJ:-0.11452826119;IRF1,2:-0.123999862875;ALX4:-0.12495480966;IRF7:-0.130359372907;KLF4:-0.134016172059;EP300:-0.146825619249;RFX1:-0.156322984028;STAT1,3:-0.163004155383;MEF2{A,B,C,D}:-0.170143985398;BPTF:-0.171464672495;RFX2..5_RFXANK_RFXAP:-0.180630598947;FOXM1:-0.186089624544;YY1:-0.188794591023;ATF2:-0.197969168039;FOX{D1,D2}:-0.213584840653;HNF4A_NR2F1,2:-0.217143721992;TEF:-0.222843408554;AR:-0.223366468236;RXRA_VDR{dimer}:-0.232289124872;MYFfamily:-0.23304696083;ALX1:-0.236640269995;HBP1_HMGB_SSRP1_UBTF:-0.239171054144;NR1H4:-0.252161050725;XBP1:-0.257534831197;PAX5:-0.273997068906;ARID5B:-0.280742517553;PAX2:-0.280873620884;ZIC1..3:-0.285330856984;MTE{core}:-0.286565043765;UFEwm:-0.288349904111;NKX3-1:-0.300832574018;FOXP1:-0.310550039272;DMAP1_NCOR{1,2}_SMARC:-0.314338081704;CREB1:-0.325892007987;FOX{F1,F2,J1}:-0.328022572845;XCPE1{core}:-0.328721241313;ATF5_CREB3:-0.351082667607;NFIX:-0.358119374589;NANOG{mouse}:-0.364804104927;REST:-0.367847728265;EBF1:-0.367999545443;CDX1,2,4:-0.371432636141;STAT2,4,6:-0.378209763298;NFKB1_REL_RELA:-0.393753569646;NKX3-2:-0.40887298605;FOXL1:-0.412704418202;NHLH1,2:-0.425484716495;TBX4,5:-0.431448547197;ATF4:-0.43322058768;NKX2-2,8:-0.433319848896;SPIB:-0.436871533307;RUNX1..3:-0.440427705418;IKZF1:-0.442068321598;TFCP2:-0.444784471423;SNAI1..3:-0.448310288609;RXR{A,B,G}:-0.463608590718;ESR1:-0.479994528905;PATZ1:-0.4891236538;PDX1:-0.490557544661;RREB1:-0.4961823607;PAX4:-0.526383344109;SOX2:-0.536705831249;ESRRA:-0.549327635587;HES1:-0.565538064025;ELF1,2,4:-0.579960871259;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.583748002882;SPI1:-0.603493579606;NR5A1,2:-0.607854950595;TOPORS:-0.608649639745;ZNF238:-0.611761223569;ETS1,2:-0.614396556724;LMO2:-0.616685277712;HOX{A6,A7,B6,B7}:-0.621799013848;NFIL3:-0.629982957007;SREBF1,2:-0.647842304671;JUN:-0.660048726453;CDC5L:-0.683209316185;ZEB1:-0.725128401023;FOXP3:-0.741752769838;ZNF423:-0.75832170092;TBP:-0.759583487336;MYOD1:-0.781581108895;NKX2-1,4:-0.821866251039;TGIF1:-0.837233765787;HAND1,2:-0.870553574004;FOXN1:-0.892965559435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.05379827979;SMAD1..7,9:-1.21866212585;TLX2:-1.40554917555;T:-1.52149841351;HIF1A:-1.59232263004;ATF6:-1.60132946547 | |top_motifs=HOXA9_MEIS1:1.13805049519;TFDP1:1.08349565025;VSX1,2:1.05043299501;GFI1:0.915120739548;NR3C1:0.9057280311;E2F1..5:0.887857579673;STAT5{A,B}:0.877274992858;PPARG:0.871180123358;TEAD1:0.797764593599;PAX3,7:0.761988886589;ADNP_IRX_SIX_ZHX:0.744215423929;PBX1:0.740570106435;FOX{I1,J2}:0.732821019813;ONECUT1,2:0.722795452982;PAX6:0.718015437731;ZNF143:0.696228547775;ZNF384:0.682946144759;POU1F1:0.635643451646;POU3F1..4:0.604168440162;HMGA1,2:0.576823776311;GLI1..3:0.573780286151;POU5F1:0.56234782179;AIRE:0.520380582754;NFY{A,B,C}:0.519178122901;LEF1_TCF7_TCF7L1,2:0.501757927488;HOX{A5,B5}:0.49956643703;SOX17:0.483566999182;TAL1_TCF{3,4,12}:0.478770819126;MYB:0.466418269187;GATA4:0.443430831695;FOXD3:0.429888020222;NKX2-3_NKX2-5:0.424433593545;EN1,2:0.418035442352;HMX1:0.405583154039;MZF1:0.397800615422;SRF:0.390460340065;LHX3,4:0.388375191409;ZNF148:0.359631491863;PAX8:0.350905613036;GTF2A1,2:0.340007969752;PITX1..3:0.338558069933;RORA:0.333848212987;NKX6-1,2:0.314944109462;BREu{core}:0.310308130001;FOS_FOS{B,L1}_JUN{B,D}:0.306478539732;IKZF2:0.291483465475;MAZ:0.287161580799;TFAP2B:0.285504865816;EGR1..3:0.259600925206;MED-1{core}:0.240018878915;FOXA2:0.223989099921;OCT4_SOX2{dimer}:0.219530444073;GTF2I:0.211888979073;NRF1:0.211169471223;HOX{A4,D4}:0.199031084444;CUX2:0.197884589731;GFI1B:0.185014346387;ELK1,4_GABP{A,B1}:0.170697613958;PRDM1:0.156907850206;NFATC1..3:0.156206968742;POU6F1:0.137249750734;BACH2:0.136296821041;NANOG:0.133545697362;GCM1,2:0.131564684814;AHR_ARNT_ARNT2:0.119093599893;NFE2:0.114716699055;SOX5:0.111132039438;MAFB:0.108851142085;PAX1,9:0.100223527273;POU2F1..3:0.0997615777777;NR6A1:0.0887382293025;TLX1..3_NFIC{dimer}:0.0846955207243;HLF:0.080371073168;PRRX1,2:0.0551385292427;ZBTB16:0.0509906078151;CRX:0.0490769701155;TFAP4:0.0437859384286;FOSL2:0.0248533074365;NFE2L1:0.024571046635;FOXQ1:0.0240884349836;SOX{8,9,10}:0.0223270709647;HSF1,2:0.0204414784146;ZFP161:0.0199805071182;bHLH_family:0.0194865484358;HIC1:0.0193684737431;GZF1:-0.00221449699342;GATA6:-0.0287203640972;TP53:-0.033071224261;DBP:-0.0331147206143;SP1:-0.0437081992571;CEBPA,B_DDIT3:-0.050723324408;MYBL2:-0.0536834897172;MTF1:-0.0709687307452;FOXO1,3,4:-0.071810892101;SPZ1:-0.0934595635508;HNF1A:-0.097618496925;NFE2L2:-0.0993585835902;TFAP2{A,C}:-0.100535597549;ZBTB6:-0.104665645895;EVI1:-0.113851137083;RBPJ:-0.11452826119;IRF1,2:-0.123999862875;ALX4:-0.12495480966;IRF7:-0.130359372907;KLF4:-0.134016172059;EP300:-0.146825619249;RFX1:-0.156322984028;STAT1,3:-0.163004155383;MEF2{A,B,C,D}:-0.170143985398;BPTF:-0.171464672495;RFX2..5_RFXANK_RFXAP:-0.180630598947;FOXM1:-0.186089624544;YY1:-0.188794591023;ATF2:-0.197969168039;FOX{D1,D2}:-0.213584840653;HNF4A_NR2F1,2:-0.217143721992;TEF:-0.222843408554;AR:-0.223366468236;RXRA_VDR{dimer}:-0.232289124872;MYFfamily:-0.23304696083;ALX1:-0.236640269995;HBP1_HMGB_SSRP1_UBTF:-0.239171054144;NR1H4:-0.252161050725;XBP1:-0.257534831197;PAX5:-0.273997068906;ARID5B:-0.280742517553;PAX2:-0.280873620884;ZIC1..3:-0.285330856984;MTE{core}:-0.286565043765;UFEwm:-0.288349904111;NKX3-1:-0.300832574018;FOXP1:-0.310550039272;DMAP1_NCOR{1,2}_SMARC:-0.314338081704;CREB1:-0.325892007987;FOX{F1,F2,J1}:-0.328022572845;XCPE1{core}:-0.328721241313;ATF5_CREB3:-0.351082667607;NFIX:-0.358119374589;NANOG{mouse}:-0.364804104927;REST:-0.367847728265;EBF1:-0.367999545443;CDX1,2,4:-0.371432636141;STAT2,4,6:-0.378209763298;NFKB1_REL_RELA:-0.393753569646;NKX3-2:-0.40887298605;FOXL1:-0.412704418202;NHLH1,2:-0.425484716495;TBX4,5:-0.431448547197;ATF4:-0.43322058768;NKX2-2,8:-0.433319848896;SPIB:-0.436871533307;RUNX1..3:-0.440427705418;IKZF1:-0.442068321598;TFCP2:-0.444784471423;SNAI1..3:-0.448310288609;RXR{A,B,G}:-0.463608590718;ESR1:-0.479994528905;PATZ1:-0.4891236538;PDX1:-0.490557544661;RREB1:-0.4961823607;PAX4:-0.526383344109;SOX2:-0.536705831249;ESRRA:-0.549327635587;HES1:-0.565538064025;ELF1,2,4:-0.579960871259;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.583748002882;SPI1:-0.603493579606;NR5A1,2:-0.607854950595;TOPORS:-0.608649639745;ZNF238:-0.611761223569;ETS1,2:-0.614396556724;LMO2:-0.616685277712;HOX{A6,A7,B6,B7}:-0.621799013848;NFIL3:-0.629982957007;SREBF1,2:-0.647842304671;JUN:-0.660048726453;CDC5L:-0.683209316185;ZEB1:-0.725128401023;FOXP3:-0.741752769838;ZNF423:-0.75832170092;TBP:-0.759583487336;MYOD1:-0.781581108895;NKX2-1,4:-0.821866251039;TGIF1:-0.837233765787;HAND1,2:-0.870553574004;FOXN1:-0.892965559435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.05379827979;SMAD1..7,9:-1.21866212585;TLX2:-1.40554917555;T:-1.52149841351;HIF1A:-1.59232263004;ATF6:-1.60132946547 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10600-108E6;search_select_hide=table117:FF:10600-108E6 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | myxofibrosarcoma cell line:MFH-ino |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11729 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11729
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11729
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.883 |
| 10 | 10 | 0.296 |
| 100 | 100 | 0.96 |
| 101 | 101 | 0.362 |
| 102 | 102 | 0.317 |
| 103 | 103 | 0.458 |
| 104 | 104 | 0.967 |
| 105 | 105 | 0.51 |
| 106 | 106 | 0.0567 |
| 107 | 107 | 0.318 |
| 108 | 108 | 0.371 |
| 109 | 109 | 0.184 |
| 11 | 11 | 0.176 |
| 110 | 110 | 0.386 |
| 111 | 111 | 0.945 |
| 112 | 112 | 0.218 |
| 113 | 113 | 0.324 |
| 114 | 114 | 0.395 |
| 115 | 115 | 0.436 |
| 116 | 116 | 0.871 |
| 117 | 117 | 0.235 |
| 118 | 118 | 0.574 |
| 119 | 119 | 0.442 |
| 12 | 12 | 0.0439 |
| 120 | 120 | 0.104 |
| 121 | 121 | 0.939 |
| 122 | 122 | 0.582 |
| 123 | 123 | 0.243 |
| 124 | 124 | 0.687 |
| 125 | 125 | 0.244 |
| 126 | 126 | 0.154 |
| 127 | 127 | 0.425 |
| 128 | 128 | 0.277 |
| 129 | 129 | 0.71 |
| 13 | 13 | 0.212 |
| 130 | 130 | 0.084 |
| 131 | 131 | 0.523 |
| 132 | 132 | 0.487 |
| 133 | 133 | 0.841 |
| 134 | 134 | 0.95 |
| 135 | 135 | 0.0203 |
| 136 | 136 | 0.837 |
| 137 | 137 | 0.147 |
| 138 | 138 | 0.797 |
| 139 | 139 | 0.0132 |
| 14 | 14 | 0.323 |
| 140 | 140 | 0.211 |
| 141 | 141 | 0.344 |
| 142 | 142 | 0.302 |
| 143 | 143 | 0.463 |
| 144 | 144 | 0.316 |
| 145 | 145 | 0.804 |
| 146 | 146 | 0.314 |
| 147 | 147 | 0.4 |
| 148 | 148 | 0.00808 |
| 149 | 149 | 0.0252 |
| 15 | 15 | 0.983 |
| 150 | 150 | 0.559 |
| 151 | 151 | 0.353 |
| 152 | 152 | 0.408 |
| 153 | 153 | 0.159 |
| 154 | 154 | 0.494 |
| 155 | 155 | 0.0854 |
| 156 | 156 | 0.687 |
| 157 | 157 | 0.677 |
| 158 | 158 | 0.0832 |
| 159 | 159 | 0.618 |
| 16 | 16 | 0.653 |
| 160 | 160 | 0.947 |
| 161 | 161 | 0.206 |
| 162 | 162 | 0.598 |
| 163 | 163 | 0.556 |
| 164 | 164 | 0.47 |
| 165 | 165 | 0.845 |
| 166 | 166 | 0.713 |
| 167 | 167 | 0.884 |
| 168 | 168 | 0.377 |
| 169 | 169 | 0.318 |
| 17 | 17 | 0.579 |
| 18 | 18 | 0.742 |
| 19 | 19 | 0.246 |
| 2 | 2 | 0.207 |
| 20 | 20 | 0.824 |
| 21 | 21 | 0.637 |
| 22 | 22 | 0.741 |
| 23 | 23 | 0.281 |
| 24 | 24 | 0.135 |
| 25 | 25 | 0.975 |
| 26 | 26 | 0.891 |
| 27 | 27 | 0.356 |
| 28 | 28 | 0.972 |
| 29 | 29 | 0.33 |
| 3 | 3 | 0.0877 |
| 30 | 30 | 0.324 |
| 31 | 31 | 0.219 |
| 32 | 32 | 0.328 |
| 33 | 33 | 0.201 |
| 34 | 34 | 0.152 |
| 35 | 35 | 0.173 |
| 36 | 36 | 0.172 |
| 37 | 37 | 0.344 |
| 38 | 38 | 0.481 |
| 39 | 39 | 0.33 |
| 4 | 4 | 0.341 |
| 40 | 40 | 0.262 |
| 41 | 41 | 0.534 |
| 42 | 42 | 0.717 |
| 43 | 43 | 0.235 |
| 44 | 44 | 0.015 |
| 45 | 45 | 0.882 |
| 46 | 46 | 0.908 |
| 47 | 47 | 0.408 |
| 48 | 48 | 0.242 |
| 49 | 49 | 0.862 |
| 5 | 5 | 0.817 |
| 50 | 50 | 0.563 |
| 51 | 51 | 0.947 |
| 52 | 52 | 0.694 |
| 53 | 53 | 0.52 |
| 54 | 54 | 0.376 |
| 55 | 55 | 0.926 |
| 56 | 56 | 0.872 |
| 57 | 57 | 0.242 |
| 58 | 58 | 0.471 |
| 59 | 59 | 0.0811 |
| 6 | 6 | 0.405 |
| 60 | 60 | 0.16 |
| 61 | 61 | 0.523 |
| 62 | 62 | 0.866 |
| 63 | 63 | 0.129 |
| 64 | 64 | 0.556 |
| 65 | 65 | 0.18 |
| 66 | 66 | 0.00111 |
| 67 | 67 | 0.961 |
| 68 | 68 | 0.195 |
| 69 | 69 | 0.98 |
| 7 | 7 | 0.359 |
| 70 | 70 | 0.0203 |
| 71 | 71 | 0.283 |
| 72 | 72 | 0.238 |
| 73 | 73 | 0.394 |
| 74 | 74 | 0.475 |
| 75 | 75 | 0.17 |
| 76 | 76 | 0.377 |
| 77 | 77 | 0.0681 |
| 78 | 78 | 0.598 |
| 79 | 79 | 0.00389 |
| 8 | 8 | 0.944 |
| 80 | 80 | 0.961 |
| 81 | 81 | 0.924 |
| 82 | 82 | 0.0314 |
| 83 | 83 | 0.233 |
| 84 | 84 | 0.0046 |
| 85 | 85 | 0.00386 |
| 86 | 86 | 0.112 |
| 87 | 87 | 0.713 |
| 88 | 88 | 0.357 |
| 89 | 89 | 0.714 |
| 9 | 9 | 0.943 |
| 90 | 90 | 0.87 |
| 91 | 91 | 0.0266 |
| 92 | 92 | 0.236 |
| 93 | 93 | 0.726 |
| 94 | 94 | 0.875 |
| 95 | 95 | 0.333 |
| 96 | 96 | 0.459 |
| 97 | 97 | 0.126 |
| 98 | 98 | 0.046 |
| 99 | 99 | 0.425 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11729
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002620 skin fibroblast
DOID:1907 malignant fibroxanthoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100460 fibrosarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
4231 (histiocytoma)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
1907 (malignant fibroxanthoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
