FF:10616-108G4: Difference between revisions

Latest revision as of 14:31, 3 June 2020

Name:	squamous cell carcinoma cell line:T3M-5
Species:	Human (Homo sapiens)
Library ID:	CNhs11739
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thyroid
dev stage	NA
sex	female
age	71
cell type	unclassifiable
cell line	T3M-5
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005203

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11739		CAGE		DRX008016		DRR008888

Accession ID Hg19

Library id		BAM		CTSS
CNhs11739		DRZ000313		DRZ001698

Accession ID Hg38

Library id		BAM		CTSS
CNhs11739		DRZ011663		DRZ013048

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0341
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0248
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	1.194
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0829
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0362
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.774
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0247
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.232
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.232
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0398
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.131
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.314
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11739

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.571
MA0003.1	MA0003.1	0.761
MA0004.1	MA0004.1	0.321
MA0006.1	MA0006.1	0.183
MA0007.1	MA0007.1	0.394
MA0009.1	MA0009.1	0.292
MA0014.1	MA0014.1	0.0509
MA0017.1	MA0017.1	0.667
MA0018.2	MA0018.2	0.779
MA0019.1	MA0019.1	0.406
MA0024.1	MA0024.1	0.00591
MA0025.1	MA0025.1	0.83
MA0027.1	MA0027.1	0.899
MA0028.1	MA0028.1	6.92274e-14
MA0029.1	MA0029.1	0.167
MA0030.1	MA0030.1	0.607
MA0031.1	MA0031.1	0.702
MA0035.2	MA0035.2	0.0511
MA0038.1	MA0038.1	0.184
MA0039.2	MA0039.2	0.0281
MA0040.1	MA0040.1	0.59
MA0041.1	MA0041.1	0.606
MA0042.1	MA0042.1	0.551
MA0043.1	MA0043.1	0.812
MA0046.1	MA0046.1	0.128
MA0047.2	MA0047.2	0.643
MA0048.1	MA0048.1	0.477
MA0050.1	MA0050.1	0.699
MA0051.1	MA0051.1	0.289
MA0052.1	MA0052.1	0.507
MA0055.1	MA0055.1	0.00418
MA0057.1	MA0057.1	0.18
MA0058.1	MA0058.1	0.565
MA0059.1	MA0059.1	0.0172
MA0060.1	MA0060.1	0.153
MA0061.1	MA0061.1	0.957
MA0062.2	MA0062.2	5.73817e-19
MA0065.2	MA0065.2	0.456
MA0066.1	MA0066.1	0.795
MA0067.1	MA0067.1	0.193
MA0068.1	MA0068.1	0.464
MA0069.1	MA0069.1	0.172
MA0070.1	MA0070.1	0.481
MA0071.1	MA0071.1	0.12
MA0072.1	MA0072.1	0.984
MA0073.1	MA0073.1	0.978
MA0074.1	MA0074.1	0.535
MA0076.1	MA0076.1	1.62074e-14
MA0077.1	MA0077.1	0.3
MA0078.1	MA0078.1	0.837
MA0079.2	MA0079.2	0.792
MA0080.2	MA0080.2	0.0253
MA0081.1	MA0081.1	0.959
MA0083.1	MA0083.1	0.702
MA0084.1	MA0084.1	0.439
MA0087.1	MA0087.1	0.0567
MA0088.1	MA0088.1	0.0156
MA0090.1	MA0090.1	0.01
MA0091.1	MA0091.1	0.0716
MA0092.1	MA0092.1	0.538
MA0093.1	MA0093.1	0.246
MA0099.2	MA0099.2	2.91381e-30
MA0100.1	MA0100.1	0.284
MA0101.1	MA0101.1	0.472
MA0102.2	MA0102.2	0.528
MA0103.1	MA0103.1	5.33524e-7
MA0104.2	MA0104.2	0.179
MA0105.1	MA0105.1	0.378
MA0106.1	MA0106.1	5.07306e-10
MA0107.1	MA0107.1	0.819
MA0108.2	MA0108.2	0.153
MA0111.1	MA0111.1	0.502
MA0112.2	MA0112.2	0.45
MA0113.1	MA0113.1	0.2
MA0114.1	MA0114.1	0.847
MA0115.1	MA0115.1	0.824
MA0116.1	MA0116.1	0.059
MA0117.1	MA0117.1	0.425
MA0119.1	MA0119.1	0.183
MA0122.1	MA0122.1	0.982
MA0124.1	MA0124.1	0.212
MA0125.1	MA0125.1	0.194
MA0131.1	MA0131.1	0.878
MA0135.1	MA0135.1	0.754
MA0136.1	MA0136.1	0.00778
MA0137.2	MA0137.2	0.242
MA0138.2	MA0138.2	0.0427
MA0139.1	MA0139.1	0.0406
MA0140.1	MA0140.1	0.193
MA0141.1	MA0141.1	0.325
MA0142.1	MA0142.1	0.522
MA0143.1	MA0143.1	0.799
MA0144.1	MA0144.1	0.68
MA0145.1	MA0145.1	0.0319
MA0146.1	MA0146.1	0.371
MA0147.1	MA0147.1	0.052
MA0148.1	MA0148.1	0.086
MA0149.1	MA0149.1	0.0671
MA0150.1	MA0150.1	0.0156
MA0152.1	MA0152.1	0.282
MA0153.1	MA0153.1	0.84
MA0154.1	MA0154.1	0.479
MA0155.1	MA0155.1	0.186
MA0156.1	MA0156.1	3.0494e-6
MA0157.1	MA0157.1	0.66
MA0159.1	MA0159.1	0.0105
MA0160.1	MA0160.1	0.534
MA0162.1	MA0162.1	0.766
MA0163.1	MA0163.1	0.042
MA0164.1	MA0164.1	0.57
MA0258.1	MA0258.1	0.355
MA0259.1	MA0259.1	0.513

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11739

Novel motif	Logo	P-value
1	1	0.287
10	10	0.326
100	100	0.925
101	101	0.27
102	102	0.492
103	103	0.166
104	104	0.558
105	105	0.826
106	106	0.0178
107	107	0.00122
108	108	0.247
109	109	0.0085
11	11	0.599
110	110	0.116
111	111	0.481
112	112	0.563
113	113	0.0833
114	114	0.456
115	115	0.905
116	116	0.246
117	117	0.056
118	118	0.957
119	119	0.538
12	12	0.742
120	120	0.281
121	121	0.581
122	122	0.61
123	123	0.839
124	124	0.089
125	125	0.827
126	126	0.233
127	127	0.658
128	128	0.418
129	129	0.0628
13	13	0.0554
130	130	0.956
131	131	0.831
132	132	0.782
133	133	0.758
134	134	0.0437
135	135	0.0323
136	136	0.0316
137	137	0.455
138	138	0.117
139	139	0.448
14	14	0.999
140	140	0.227
141	141	0.774
142	142	0.628
143	143	0.764
144	144	0.543
145	145	0.271
146	146	0.795
147	147	0.558
148	148	0.714
149	149	0.961
15	15	0.435
150	150	0.588
151	151	0.301
152	152	0.128
153	153	0.898
154	154	0.642
155	155	0.767
156	156	0.433
157	157	0.856
158	158	0.685
159	159	0.482
16	16	0.0296
160	160	0.696
161	161	0.308
162	162	0.455
163	163	0.538
164	164	0.604
165	165	0.284
166	166	0.142
167	167	0.36
168	168	0.801
169	169	0.0475
17	17	0.119
18	18	0.157
19	19	0.982
2	2	0.851
20	20	0.257
21	21	0.903
22	22	0.815
23	23	0.502
24	24	0.197
25	25	0.786
26	26	0.206
27	27	0.71
28	28	0.0801
29	29	0.421
3	3	0.179
30	30	0.392
31	31	0.854
32	32	0.224
33	33	0.0212
34	34	0.128
35	35	0.397
36	36	0.0362
37	37	0.224
38	38	0.181
39	39	0.698
4	4	0.538
40	40	0.196
41	41	0.153
42	42	0.154
43	43	0.694
44	44	0.896
45	45	0.378
46	46	0.0907
47	47	0.265
48	48	0.24
49	49	0.71
5	5	0.349
50	50	0.416
51	51	0.905
52	52	0.874
53	53	0.452
54	54	0.445
55	55	0.0245
56	56	0.444
57	57	0.0319
58	58	0.886
59	59	0.848
6	6	0.95
60	60	0.257
61	61	0.607
62	62	0.815
63	63	0.126
64	64	0.948
65	65	0.358
66	66	0.00476
67	67	0.396
68	68	0.124
69	69	0.951
7	7	0.933
70	70	0.019
71	71	0.136
72	72	0.736
73	73	0.0294
74	74	0.817
75	75	0.0322
76	76	0.278
77	77	0.592
78	78	0.0283
79	79	0.107
8	8	0.279
80	80	0.611
81	81	0.7
82	82	0.647
83	83	0.485
84	84	0.604
85	85	0.969
86	86	0.277
87	87	0.00335
88	88	0.915
89	89	0.332
9	9	0.366
90	90	0.253
91	91	0.234
92	92	0.49
93	93	0.403
94	94	0.765
95	95	0.251
96	96	0.293
97	97	0.221
98	98	0.967
99	99	0.652

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11739

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005203
+|accession_numbers=CAGE;DRX008016;DRR008888;DRZ000313;DRZ001698;DRZ011663;DRZ013048
 |ancestors_in_anatomy_facet=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000004,CL:0000255
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.32!208.91!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.27!208.91!IRF6;;chr2:176969228..176969260,+!p1@HOXD11!1.74!53.64!HOXD11;;chr12:66218598..66218645,+!p2@HMGA2!1.69!212.44!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.66!50.46!BNC1;;chr3:189507432..189507459,+!p1@TP63!1.64!42.70!TP63;;chr2:114036488..114036504,-!p1@PAX8!1.59!38.11!PAX8;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.35!FOXQ1;;chr10:8096631..8096660,+!p1@GATA3!1.49!36.35!GATA3;;chr12:77459306..77459365,-!p1@E2F7!1.48!346.90!E2F7;;chr1:209979411..209979433,-!p2@IRF6!1.47!28.58!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.45!71.64!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.44!100.58!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.43!232.20!HMGA2;;chr12:54785054..54785072,-!p4@ZNF385A!1.40!27.17!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!39.17!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!36.00!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.39!23.29!ZBED2;;chr12:66218003..66218018,+!p9@HMGA2!1.38!27.53!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!1.33!24.00!GATA3;;chr1:6479968..6479986,-!p1@HES2!1.33!20.47!HES2;;chr15:67418119..67418162,+!p5@SMAD3!1.32!21.88!SMAD3;;chr17:8027418..8027432,-!p1@HES7!1.32!20.12!HES7;;chr5:72744594..72744609,-!p1@FOXD1!1.30!83.99!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!1.28!21.88!POU2F3;;chr12:27485762..27485776,+!p3@ARNTL2!1.27!46.94!ARNTL2;;chr11:65667846..65667868,-!p1@FOSL1!1.25!428.77!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.24!166.57!SOX9;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.24!16.23!SOHLH2;;chr11:34642656..34642667,+!p2@EHF!1.22!15.53!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.22!15.53!ELF3;;chr15:67418047..67418093,+!p4@SMAD3!1.21!19.06!SMAD3;;chr7:101917447..101917479,+!p4@CUX1!1.18!14.12!CUX1;;chr8:102504651..102504683,+!p1@GRHL2!1.18!14.12!GRHL2;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.76!SOX7;;chr2:176969179..176969226,+!p2@HOXD11!1.16!13.41!HOXD11;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.06!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!1.11!12.00!NKX2-5;;chr12:66218573..66218596,+!p7@HMGA2!1.09!16.94!HMGA2;;chr3:32023232..32023273,+!p1@ZNF860!1.09!16.23!ZNF860;;chr2:46524897..46524911,+!p2@EPAS1!1.08!31.41!EPAS1;;chr7:28448965..28448994,+!p2@CREB5!1.07!37.76!CREB5;;chr5:137804405..137804444,+!p3@EGR1!1.07!13.06!EGR1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.06!92.81!PPP1R13L;;chr5:134369879..134369898,-!p2@PITX1!1.06!10.59!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.05!21.88!SOX15;;chr1:24645832..24645853,+!p1@GRHL3!1.04!9.88!GRHL3;;chr10:44101850..44101896,+!p1@ZNF485!1.03!31.05!ZNF485;;chr13:73633131..73633149,+!p1@KLF5!1.01!101.28!KLF5;;chr6:34210478..34210481,+!p8@HMGA1!0.99!8.82!HMGA1;;chr6:10413188..10413249,-!p7@TFAP2A!0.98!8.47!TFAP2A;;chr12:66218443..66218461,+!p8@HMGA2!0.96!10.59!HMGA2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.95!34.23!LRRFIP2;;chr12:96588368..96588394,+!p3@ELK3!0.95!21.88!ELK3;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.41!FOXD1;;chr19:33865009..33865090,+!p3@CEBPG!0.95!10.59!CEBPG;;chr19:45971246..45971265,+!p1@FOSB!0.94!148.92!FOSB;;chr7:101917407..101917443,+!p3@CUX1!0.94!7.76!CUX1;;chr7:28610099..28610113,+!p5@CREB5!0.94!7.76!CREB5;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.53!RUNX1;;chr6:106534192..106534224,+!p1@PRDM1!0.92!21.17!PRDM1;;chr15:74833584..74833626,+!p1@ARID3B!0.92!17.64!ARID3B;;chr10:44101902..44101932,+!p2@ZNF485!0.92!15.17!ZNF485;;chr19:53496768..53496799,-!p1@ZNF702P!0.92!11.65!ZNF702P;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.47!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.41!DRAP1;;chr12:66218378..66218401,+!p6@HMGA2!0.91!11.29!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!0.91!7.06!ZNF365;;chr1:158979792..158979814,+!p2@IFI16!0.90!69.87!IFI16;;chr7:99156434..99156510,+!p2@ZNF655!0.90!44.46!ZNF655;;chr5:137801160..137801176,+!p1@EGR1!0.89!706.85!EGR1;;chr10:44070016..44070069,-!p1@ZNF239!0.89!21.17!ZNF239;;chr10:8095593..8095625,+!p3@GATA3!0.89!8.12!GATA3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.89!6.71!LHX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.89!6.71!ZBTB38;;chr10:43134001..43134026,-!p1@ZNF33B!0.88!31.05!ZNF33B;;chr11:64764435..64764449,-!p1@BATF2!0.88!9.18!BATF2;;chr7:28725740..28725778,+!p1@CREB5!0.87!60.70!CREB5;;chr19:45579725..45579743,-!p1@ZNF296!0.87!30.35!ZNF296;;chr10:64134120..64134183,+!p1@ZNF365!0.87!7.76!ZNF365;;chr12:27485823..27485868,+!p2@ARNTL2!0.85!26.11!ARNTL2;;chr18:3447536..3447542,+!p23@TGIF1!0.85!6.00!TGIF1;;chr2:172967621..172967637,-!p1@DLX2!0.84!16.59!DLX2;;chr6:106534230..106534254,+!p2@PRDM1!0.84!15.53!PRDM1;;chr5:137804357..137804390,+!p4@EGR1!0.84!7.06!EGR1;;chr6:34204921..34204939,+!p3@HMGA1!0.83!185.27!HMGA1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.71!FOXD1;;chr7:99156011..99156036,+!p7@ZNF655!0.82!6.71!ZNF655;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.65!FOSL1;;chr12:48298765..48298783,-!p2@VDR!0.81!12.00!VDR;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.93!SNAI2;;chr11:64073022..64073056,+!p1@ESRRA!0.80!69.52!ESRRA;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.70!SNAI2;;chr7:101917482..101917507,+!p6@CUX1!0.80!5.29!CUX1;;chr1:24646263..24646277,+!p4@GRHL3!0.80!5.29!GRHL3;;chr15:67418177..67418204,+!p9@SMAD3!0.80!5.29!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.80!5.29!FOXL1;;chr12:66218420..66218439,+!p12@HMGA2!0.80!5.29!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.80!5.29!HMGA2;;chr12:96588143..96588185,+!p1@ELK3!0.79!68.46!ELK3;;chr7:99156314..99156372,+!p4@ZNF655!0.78!18.00!ZNF655;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.77!4.94!PAX9;;chr1:43148855..43148908,+!p4@YBX1!0.76!7.76!YBX1;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.76!ZFP64;;chr3:141087339..141087387,+!p2@ZBTB38!0.75!52.93!ZBTB38;;chr19:12203100..12203132,+!p1@ZNF788!0.75!9.88!ZNF788;;chr19:57792157..57792170,+!p6@ZNF460!0.75!7.06!ZNF460;;chr1:40367668..40367684,-!p2@MYCL1!0.75!4.59!MYCL1;;chr12:54393880..54393962,+!p1@HOXC9!0.75!4.59!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.75!4.59!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.59!HMGA2;;chr9:100615499..100615519,+!p1@FOXE1!0.75!4.59!FOXE1;;chr3:178789220..178789255,-!p6@ZMAT3!0.75!4.59!ZMAT3;;chr9:137263790..137263815,+!p7@RXRA!0.75!4.59!RXRA;;chr11:128392273..128392308,-!p2@ETS1!0.73!20.47!ETS1;;chr19:9785724..9785740,-!p2@ZNF562!0.73!19.06!ZNF562;;chr3:141087393..141087426,+!p3@ZBTB38!0.73!19.06!ZBTB38;;chr19:33864571..33864596,+!p2@CEBPG!0.73!11.65!CEBPG;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.12!DRAP1;;chr19:53193731..53193767,-!p1@ZNF83!0.72!42.35!ZNF83;;chr3:141868357..141868393,-!p3@TFDP2!0.72!31.41!TFDP2;;chr13:41593425..41593480,-!p1@ELF1!0.72!30.35!ELF1;;chr3:24536253..24536328,-!p1@THRB!0.72!8.47!THRB;;chr2:113999263..113999274,-!p13@PAX8!0.72!4.23!PAX8;;chr1:201979743..201979762,+!p1@ELF3!0.72!4.23!ELF3;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.23!BNC1;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.23!ETV4;;chr5:50679228..50679288,+!p1@ISL1!0.72!4.23!ISL1;;chr1:158979872..158979898,+!p3@IFI16!0.71!14.12!IFI16;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.71!13.41!ZKSCAN1;;chr12:27485785..27485816,+!p1@ARNTL2!0.70!31.76!ARNTL2;;chr1:40367530..40367597,-!p1@MYCL1!0.70!7.76!MYCL1;;chr3:168864315..168864339,-!p2@MECOM!0.70!7.06!MECOM;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.65!NR2F2;;chr11:47236584..47236679,+!p1@DDB2!0.69!48.70!DDB2;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.65!STAT4;;chr3:69811882..69811898,+!p6@MITF!0.69!3.88!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.69!3.88!OVOL1;;chr3:150126759..150126784,+!p2@TSC22D2!0.68!19.41!TSC22D2;;chr1:43148792..43148849,+!p2@YBX1!0.68!16.23!YBX1;;chr2:169312600..169312606,+!p2@CERS6!0.68!6.35!CERS6;;chr3:178789522..178789564,-!p2@ZMAT3!0.67!31.41!ZMAT3;;chr12:96588219..96588263,+!p2@ELK3!0.67!30.70!ELK3;;chr4:4291837..4291859,-!p2@LYAR!0.67!13.41!LYAR;;chr10:48355030..48355090,+!p1@ZNF488!0.67!4.94!ZNF488;;chr17:38256822..38256851,-!p1@NR1D1!0.66!32.11!NR1D1;;chr3:40566488..40566502,+!p3@ZNF621!0.66!7.06!ZNF621;;chr10:8097321..8097348,+!p4@GATA3!0.66!3.53!GATA3;;chr1:209979449..209979460,-!p3@IRF6!0.66!3.53!IRF6;;chr19:58694421..58694485,+!p1@ZNF274!0.65!21.17!ZNF274;;chr8:22550982..22550999,-!p1@EGR3!0.65!10.94!EGR3;;chr1:59249645..59249656,-!p4@JUN!0.65!9.88!JUN;;chr19:33793430..33793447,-!p1@CEBPA!0.63!15.88!CEBPA;;chr17:41622925..41622976,-!p3@ETV4!0.63!5.29!ETV4;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.23!FOXD1;;chr12:80084737..80084763,-!p3@PAWR!0.62!13.76!PAWR;;chr17:46687959..46688007,-!p2@HOXB7!0.62!4.59!HOXB7;;chr15:101069113..101069169,-!p1@CERS3!0.62!3.18!CERS3;;chr15:67418099..67418118,+!p16@SMAD3!0.62!3.18!SMAD3;;chr17:46703240..46703257,-!p6@HOXB9!0.62!3.18!HOXB9;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.18!GRHL2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.18!HMGA2;;chr19:58740449..58740456,+!p3@ZNF544!0.62!3.18!ZNF544;;chr20:18038521..18038571,-!p1@OVOL2!0.62!3.18!OVOL2;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.61!129.51!ZKSCAN1;;chr19:9695169..9695188,-!p1@ZNF121!0.61!65.64!ZNF121;;chr6:28973366..28973394,-!p2@ZNF311!0.61!3.88!ZNF311;;chr6:34204672..34204692,+!p1@HMGA1!0.60!407.24!HMGA1;;chr3:193853927..193853944,+!p1@HES1!0.60!118.93!HES1;;chr12:7079780..7079791,-!p2@PHB2!0.60!18.35!PHB2;;chr14:73360799..73360817,-!p1@DPF3!0.60!12.00!DPF3;;chr13:45010939..45011033,-!p1@TSC22D1!0.59!235.73!TSC22D1;;chr4:47916588..47916607,-!p1@NFXL1!0.59!29.29!NFXL1;;chr20:48599506..48599526,+!p1@SNAI1!0.59!22.23!SNAI1;;chr7:99156145..99156207,+!p5@ZNF655!0.59!11.65!ZNF655;;chr18:19749541..19749557,+!p1@GATA6!0.59!10.59!GATA6;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.59!HMGA2;;chr11:6947647..6947698,+!p2@ZNF215!0.59!4.23!ZNF215;;chr3:169490606..169490621,+!p3@MYNN!0.59!4.23!MYNN;;chr20:55204351..55204377,+!p1@TFAP2C!0.59!3.88!TFAP2C;;chr7:27135591..27135658,-!p1@HOXA1!0.58!6.00!HOXA1;;chr18:19749517..19749531,+!p3@GATA6!0.58!5.65!GATA6;;chr1:24645921..24645973,+!p2@GRHL3!0.58!2.82!GRHL3;;chr22:24093154..24093183,-!p2@ZNF70!0.58!2.82!ZNF70;;chr3:189507460..18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@@ Line 36: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10616-108G4
 |is_a=EFO:0002091;;FF:0000210;;FF:0102024
 |is_obsolete=
+|library_id=CNhs11739
+|library_id_phase_based=2:CNhs11739
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10616
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10616
 |name=squamous cell carcinoma cell line:T3M-5
 |namespace=FANTOM5
@@ Line 44: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11739,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 59: / Line 77: @@
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@@ Line 80: / Line 99: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10616-108G4;search_select_hide=table117:FF:10616-108G4
 }}

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FF:10616-108G4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0