FF:10639-108I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005011 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007998;DRR008870;DRZ000295;DRZ001680;DRZ011645;DRZ013030 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:3001 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0103803,FF:0100297,FF:0101120,FF:0100167,FF:0100658,FF:0101555 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120,FF:0101555 | |fonse_cell_line=FF:0101120,FF:0101555 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101555 | |fonse_cell_line_closure=FF:0101120,FF:0101555 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10639-108I9 | |id=FF:10639-108I9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103803 | ||
|is_obsolete= | |||
|library_id=CNhs11746 | |||
|library_id_phase_based=2:CNhs11746 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10639 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10639 | |||
|name=serous adenocarcinoma cell line:JHOS-2 | |name=serous adenocarcinoma cell line:JHOS-2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11746,LSID819,release009,COMPLETED | |profile_hcage=CNhs11746,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.226112168879898,0,0,0,0,0.32568174059507,0.0895896456213401,-0.18524365258475,0.449596599355668,0,0,0,0.0716665156842577,0,0,0,0,0,0,0.0895896456213401,0,0,0.0738745998209734,0,0,0.04479482281067,0,0,0.448606426365075,0,0,0.319267747980934,0,0,0,0,0,0,0,0,0,0,0.0895896456213401,0,0.193811256998585,0.327960889936157,0,0,0,0,0,0,0,0.770193496966041,0,0,0,0,0,0,0.0895896456213401,0.185500027095449,0,0,0.0664775579723747,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163821185185472,0,0,0,0.100399734246159,0.04479482281067,0,0,0.0239250558752688,0,0,-0.139364114239534,0,0,0,0.0985954701181503,-0.069951208526842,0,0,0.04479482281067,0,0.184457037100347,0.413158624702188,0,0,0,0,0,0,0.163821185185472,0,0,0,0,0,0,0,0,0,0,0.176908567394105,0,0,0,0.0768010470173612,0.212297902798096,0,0,0.227197610169401,0,0.0339308889059423,0 | |||
|repeat_enrich_byname=0,0,0,0.163821185185472,0.184457037100347,0,0,0.0895896456213401,0.0895896456213401,0,0,0,0,0,0,0,-0.247178875285564,0.117335365365475,-0.310265033566537,0.232082858073604,0,0,0.197011602020702,0,0.0895896456213401,0,0,0,0,0.163821185185472,0.227197610169401,0,0.154372521385489,0,0.0391770940320252,0,0,0,0,0.0123730118698723,0.0701257696986684,0,-0.060659256064809,0.744473195766964,0,0,0,0,-0.015395670080597,0,-0.120879483793741,-0.0827201683234173,0.0895896456213401,-0.00860322352107801,0.117016526293092,0,0,0,-0.466445960420531,-0.394355185146224,0,0,0.326277819256817,0.0734953806930683,0,0,-0.391044581551635,0,-0.120309899993,0.0259572780406692,0,0.143814749525131,0,0,0,0,0,0,0,0.0895896456213401,0.227197610169401,0,0,0.271551727646129,0.272718680523906,0,0.227197610169401,0.624023728246664,0,-0.53147703486995,0.0895896456213401,0.0359360665625871,-0.209464970771095,-0.123538403127458,-0.00099246783239415,-0.111377723802468,0.0123649533598808,0.0732082735871625,0.0120601555640304,-0.283103900946834,0.0985954701181503,-0.147401849371139,-0.100392073928507,0,-0.315103957377423,0.210902580610259,0.0512026519266073,-0.139364114239534,0.0294429849087092,-0.177953234418736,0.158791479155155,0,0.624023728246664,0,0.396742221259531,0,0,0.0272222317484773,-0.112901318601092,-0.306687577444291,-0.273611697446441,0.0524684899451625,0.588391868274221,-0.0395325284566706,-0.230238842727194,0.00341905446166289,0.264034974941427,0,0,-1.63179277170578e-05,0.0462000991869468,0.369065364169145,0.254284532325131,0,0.0333594844142702,0.0954769241081034,0.126705415403406,-0.223624762219215,0.0345085112646077,0,0.0376962131504852,-0.092777460189956,0.163821185185472,0,0,0,0,0.254770245748327,-0.123893180354324,0.142742439041531,0,0.0750810184049085,0.163111244873196,0.123918010151683,0,-0.269996517605539,0.0803954049909443,-0.16491909692334,-0.269344899343607,0,0.0807413104748205,0.628882618459158,0.0674096882187538,-0.139902417053684,0.31715117378525,-0.061554201927749,-0.061330080458162,-0.0509902183164539,0.218136530787098,-0.0485553228228562,-0.0881268324752877,0.0165597937458154,-0.214627018670398,0.690690515198052,-0.000363891284679951,-0.456824488826166,0.163821185185472,0.199643115965981,0,0.300688522309995,0,-0.0671486738225383,-0.208898280968786,-0.275468189395215,0.0449825194619646,0,0.0118906117971656,0.108020680104262,0,0.0101080151660735,0.00253083424136469,0.415598962675843,-0.150367083334639,0.144712214495957,0.188922455116405,0.130720136212079,0,-0.507587770051603,0,0,-0.0782146824867453,0.140121962832687,0,0.225853618830142,0.100399734246159,0.176846142429432,0.0478501117505376,0,0,0.135361845632002,0,0.163821185185472,0.23648011719051,-0.024282378847407,0.00424040428803096,0.264010604738495,-0.148746290137117,0.236025651957852,0,0,0.1980702346319,0.0895896456213401,-0.166695535113938,0,0.163821185185472,-0.136282491514123,-0.116628112990133,0,0,0,0.00492757122833704,0,0,0,0,0.0239795703836407,0,0,0.276138261047022,-0.0723409418783941,0.0895896456213401,0,0,0,0,0,0,0.171689307207779,0,0.227197610169401,-1.4285096536342,-0.0517075604465158,-0.12301741567642,0,0,0,0,0.159874598043601,0.07925582624333,0,0.320361631262164,0.227197610169401,0.165767735252227,0,0,-0.0861409897892114,0,0,0.382134564341784,0.1135988050847,0.106090728131808,-0.0677729399432733,0,0,0.04479482281067,0.826317249404376,0,0,0,0.0343225165156742,-0.118859728564612,0,0,-0.193201269907812,0,-0.231631572220332,-0.0815818795468414,0,0.115499030705393,-0.238141487012059,0.771704587017044,0,0,0.467252586272954,0,0,-0.0489013050114933,0,0,0,0,0,0,0,0.0895896456213401,0,-0.214314512399756,0.122265047795967,0,0.0742126166063691,0,0.415598962675843,0,0.764269128683567,0,0,0,0,-0.0254317222773963,0.0715971285269612,0.163821185185472,0,0,0,0.003985345302069,0,0,0.436975138536202,0.158890079411733,0,0,0.04479482281067,0,0,0,0,0,0.152597788583422,0,0,0,0,0,0.185500027095449,0,0,0,0.452224337759796,0.809603553089996,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103878524133953,0.120881373758142,0,0,0,0,0,0.0895896456213401,0,-0.18524365258475,0,0.0895896456213401,0,0,-0.0242947280876371,0,0,0,0.723068406495062,0,0.32568174059507,0,0.0895896456213401,0,0,0,0.0895896456213401,0.165767735252227,0,0,0,0,0,0,0.0895896456213401,0,0,0,0.04479482281067,0,0,0,-0.134225733398361,0,0.183816244469589,0,0,0,-0.066860617380815,0,0,0,0,0.0895896456213401,0,0.176459057309394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0404224486853859,0,0,0,0,0.0895896456213401,0,0,0.448606426365075,0.0895896456213401,0,0.155645518044436,0,0,0,0,0.197761671463358,0,0.257665710352209,0.0485485008838163,-0.0890626633843826,0,0,0,0.156176985580442,0,0,-0.0273212699050817,0.0895896456213401,0.0228122582024388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0738745998209734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895896456213401,0,0.0895896456213401,0,0,0,0.0895896456213401,0,0,0,0.0478992293173195,0.227197610169401,0,0,0,0,0,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=22.0336 | |rna_weight_ug=22.0336 | ||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1521 | |sample_cell_catalog=RCB1521 | ||
|sample_cell_line=JHOS-2 | |sample_cell_line=JHOS-2 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.36004309678793e-241!GO:0043226;organelle;3.5213194462064e-198!GO:0043229;intracellular organelle;1.75602628444994e-197!GO:0043231;intracellular membrane-bound organelle;1.72498192489229e-193!GO:0043227;membrane-bound organelle;1.93661029145725e-193!GO:0005737;cytoplasm;4.9196309111484e-175!GO:0044422;organelle part;1.01073485338496e-142!GO:0044446;intracellular organelle part;3.76271686596782e-141!GO:0044444;cytoplasmic part;1.52382235994538e-120!GO:0032991;macromolecular complex;1.73423978676658e-92!GO:0005634;nucleus;7.9453532378679e-83!GO:0044237;cellular metabolic process;2.89537910297569e-80!GO:0044238;primary metabolic process;4.96889344549397e-78!GO:0030529;ribonucleoprotein complex;4.96889344549397e-78!GO:0005515;protein binding;8.80063909680418e-77!GO:0043170;macromolecule metabolic process;3.90397142406037e-76!GO:0044428;nuclear part;8.6036780380204e-71!GO:0003723;RNA binding;8.42008602876492e-69!GO:0043233;organelle lumen;1.14817466516168e-66!GO:0031974;membrane-enclosed lumen;1.14817466516168e-66!GO:0005739;mitochondrion;2.91932440953437e-58!GO:0016043;cellular component organization and biogenesis;2.59143929284769e-50!GO:0031090;organelle membrane;3.69409530410859e-49!GO:0043283;biopolymer metabolic process;2.40976414695971e-47!GO:0043234;protein complex;5.43295806368432e-47!GO:0005840;ribosome;8.10507597202946e-46!GO:0006396;RNA processing;8.10507597202946e-46!GO:0019538;protein metabolic process;5.65251158408159e-45!GO:0006412;translation;7.57374333763532e-45!GO:0033036;macromolecule localization;1.95758614983548e-44!GO:0015031;protein transport;1.58433251805585e-43!GO:0031981;nuclear lumen;1.81941193090358e-42!GO:0010467;gene expression;1.58335792977227e-41!GO:0044267;cellular protein metabolic process;4.04084400332647e-41!GO:0044260;cellular macromolecule metabolic process;9.83303923338834e-41!GO:0003735;structural constituent of ribosome;1.87535342187589e-40!GO:0008104;protein localization;2.66697638763019e-40!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.09481417286654e-39!GO:0016071;mRNA metabolic process;5.10217723091599e-39!GO:0045184;establishment of protein localization;6.52294540422236e-39!GO:0043228;non-membrane-bound organelle;9.20976936699528e-39!GO:0043232;intracellular non-membrane-bound organelle;9.20976936699528e-39!GO:0044429;mitochondrial part;5.06726356140799e-38!GO:0031967;organelle envelope;6.7386953874635e-38!GO:0046907;intracellular transport;6.83331441127837e-38!GO:0031975;envelope;1.29337859290157e-37!GO:0008380;RNA splicing;5.57399221615872e-36!GO:0005829;cytosol;8.49111687506031e-36!GO:0033279;ribosomal subunit;3.43992663781502e-35!GO:0009058;biosynthetic process;9.43312836360024e-35!GO:0006397;mRNA processing;1.52949138556712e-33!GO:0044249;cellular biosynthetic process;2.65034511324886e-33!GO:0009059;macromolecule biosynthetic process;1.30317658332982e-32!GO:0006996;organelle organization and biogenesis;1.07228446688989e-31!GO:0006886;intracellular protein transport;3.32739860005213e-31!GO:0065003;macromolecular complex assembly;6.11880195891547e-28!GO:0006259;DNA metabolic process;2.19922447072449e-26!GO:0019866;organelle inner membrane;3.51246909414347e-26!GO:0005681;spliceosome;3.72045890595422e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.96439199916963e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.5501891184689e-25!GO:0005654;nucleoplasm;5.3329357415606e-25!GO:0005740;mitochondrial envelope;1.05559741498023e-24!GO:0022607;cellular component assembly;2.20792187483553e-24!GO:0051649;establishment of cellular localization;5.43536893266116e-24!GO:0031966;mitochondrial membrane;5.43536893266116e-24!GO:0051641;cellular localization;6.05608108345153e-24!GO:0005743;mitochondrial inner membrane;7.02791705226147e-24!GO:0003676;nucleic acid binding;2.94064607250074e-23!GO:0007049;cell cycle;1.18281262567322e-22!GO:0000166;nucleotide binding;7.54993355016306e-22!GO:0012505;endomembrane system;1.66685731661122e-21!GO:0044445;cytosolic part;1.74792030394895e-21!GO:0006119;oxidative phosphorylation;7.0857035912163e-21!GO:0016070;RNA metabolic process;4.78747898522678e-20!GO:0044451;nucleoplasm part;2.0076775106839e-19!GO:0005730;nucleolus;1.16606687790034e-18!GO:0015934;large ribosomal subunit;1.24144388770724e-18!GO:0006457;protein folding;3.00197349869544e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.2053443786246e-18!GO:0016462;pyrophosphatase activity;6.74601872672991e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;7.85957590528705e-18!GO:0017111;nucleoside-triphosphatase activity;1.29502035012635e-17!GO:0008134;transcription factor binding;1.3258891534417e-17!GO:0044455;mitochondrial membrane part;1.62677711289467e-17!GO:0015935;small ribosomal subunit;1.89656510493433e-17!GO:0016874;ligase activity;2.41792177204214e-17!GO:0005783;endoplasmic reticulum;3.03484047598263e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.1714664293184e-17!GO:0019941;modification-dependent protein catabolic process;5.89417314372159e-17!GO:0043632;modification-dependent macromolecule catabolic process;5.89417314372159e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.22443260995801e-16!GO:0022402;cell cycle process;1.25708137590459e-16!GO:0031980;mitochondrial lumen;1.2795462538467e-16!GO:0005759;mitochondrial matrix;1.2795462538467e-16!GO:0006605;protein targeting;1.43457473127038e-16!GO:0044257;cellular protein catabolic process;1.54138893714097e-16!GO:0044265;cellular macromolecule catabolic process;2.44155512085966e-16!GO:0006974;response to DNA damage stimulus;3.85910345118342e-16!GO:0022618;protein-RNA complex assembly;4.85987299350772e-16!GO:0043285;biopolymer catabolic process;6.20916014087331e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.40749718611618e-15!GO:0044432;endoplasmic reticulum part;2.180710086567e-15!GO:0006512;ubiquitin cycle;3.99801808253776e-15!GO:0032553;ribonucleotide binding;6.71687804155715e-15!GO:0032555;purine ribonucleotide binding;6.71687804155715e-15!GO:0048770;pigment granule;7.24319903334063e-15!GO:0042470;melanosome;7.24319903334063e-15!GO:0030163;protein catabolic process;1.1366149286824e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.19783589658714e-14!GO:0005794;Golgi apparatus;1.20946412077262e-14!GO:0017076;purine nucleotide binding;1.37893962531315e-14!GO:0005694;chromosome;1.46802776064524e-14!GO:0005746;mitochondrial respiratory chain;3.73273263601053e-14!GO:0048193;Golgi vesicle transport;3.92167069602178e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.6494179415667e-14!GO:0009057;macromolecule catabolic process;8.45956735900013e-14!GO:0050136;NADH dehydrogenase (quinone) activity;8.91507168787659e-14!GO:0003954;NADH dehydrogenase activity;8.91507168787659e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.91507168787659e-14!GO:0051082;unfolded protein binding;1.4699121775886e-13!GO:0031965;nuclear membrane;2.26509071194423e-13!GO:0005635;nuclear envelope;2.50815044265661e-13!GO:0006281;DNA repair;3.35178588665408e-13!GO:0043412;biopolymer modification;5.90031392827732e-13!GO:0044453;nuclear membrane part;6.09652595581736e-13!GO:0005761;mitochondrial ribosome;6.09652595581736e-13!GO:0000313;organellar ribosome;6.09652595581736e-13!GO:0008135;translation factor activity, nucleic acid binding;7.10598637319108e-13!GO:0000278;mitotic cell cycle;7.79670905312339e-13!GO:0044427;chromosomal part;8.05538600407754e-13!GO:0016192;vesicle-mediated transport;1.38987081424356e-12!GO:0012501;programmed cell death;1.79201813190552e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.18480298242343e-12!GO:0000375;RNA splicing, via transesterification reactions;2.18480298242343e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.18480298242343e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.36837474663009e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.45972434679212e-12!GO:0005524;ATP binding;3.38026806088916e-12!GO:0006915;apoptosis;3.44478915532135e-12!GO:0051186;cofactor metabolic process;3.44478915532135e-12!GO:0032559;adenyl ribonucleotide binding;3.45743115233724e-12!GO:0005789;endoplasmic reticulum membrane;6.37952388785821e-12!GO:0006913;nucleocytoplasmic transport;8.42950218546814e-12!GO:0030964;NADH dehydrogenase complex (quinone);9.62145358773178e-12!GO:0045271;respiratory chain complex I;9.62145358773178e-12!GO:0005747;mitochondrial respiratory chain complex I;9.62145358773178e-12!GO:0030554;adenyl nucleotide binding;9.85780932411541e-12!GO:0008219;cell death;1.03838447109785e-11!GO:0016265;death;1.03838447109785e-11!GO:0044248;cellular catabolic process;1.05190029095323e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.05190029095323e-11!GO:0042773;ATP synthesis coupled electron transport;1.05190029095323e-11!GO:0050794;regulation of cellular process;1.14632333368821e-11!GO:0006464;protein modification process;1.16996783599902e-11!GO:0003712;transcription cofactor activity;2.60598642313228e-11!GO:0016604;nuclear body;2.60598642313228e-11!GO:0051169;nuclear transport;2.6916918790804e-11!GO:0006260;DNA replication;2.95774329887721e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.09775042253527e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.25495424131237e-11!GO:0051276;chromosome organization and biogenesis;3.90217110661903e-11!GO:0006403;RNA localization;6.36803441351552e-11!GO:0006446;regulation of translational initiation;6.44420680580366e-11!GO:0006366;transcription from RNA polymerase II promoter;7.8109042920359e-11!GO:0009719;response to endogenous stimulus;8.22456372714251e-11!GO:0042254;ribosome biogenesis and assembly;9.30457479004042e-11!GO:0050657;nucleic acid transport;1.18378891137724e-10!GO:0051236;establishment of RNA localization;1.18378891137724e-10!GO:0050658;RNA transport;1.18378891137724e-10!GO:0005643;nuclear pore;1.22461574888211e-10!GO:0004386;helicase activity;1.58143636249621e-10!GO:0000074;regulation of progression through cell cycle;1.59519815112073e-10!GO:0051726;regulation of cell cycle;2.08112458192397e-10!GO:0016887;ATPase activity;2.63606401579117e-10!GO:0003743;translation initiation factor activity;2.77817420260472e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.01143943949964e-10!GO:0042623;ATPase activity, coupled;3.58767629412795e-10!GO:0043687;post-translational protein modification;3.7974282582704e-10!GO:0006732;coenzyme metabolic process;4.44928857328786e-10!GO:0006413;translational initiation;6.33874510828541e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.52500798482887e-10!GO:0065002;intracellular protein transport across a membrane;6.5728424260255e-10!GO:0022403;cell cycle phase;7.48641147307158e-10!GO:0008639;small protein conjugating enzyme activity;8.08158972586034e-10!GO:0016607;nuclear speck;8.32660523078089e-10!GO:0051301;cell division;1.06099078174432e-09!GO:0004842;ubiquitin-protein ligase activity;1.46065772482891e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.66242418643047e-09!GO:0007067;mitosis;1.80767305592801e-09!GO:0000087;M phase of mitotic cell cycle;1.99208403566584e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.8192650843523e-09!GO:0048523;negative regulation of cellular process;3.66703780383023e-09!GO:0005768;endosome;3.79937729681853e-09!GO:0006323;DNA packaging;4.95330181295528e-09!GO:0051028;mRNA transport;7.36486747553565e-09!GO:0065004;protein-DNA complex assembly;8.40240755949095e-09!GO:0019787;small conjugating protein ligase activity;9.09460596704056e-09!GO:0017038;protein import;1.3374931497292e-08!GO:0008026;ATP-dependent helicase activity;1.35023390869795e-08!GO:0015630;microtubule cytoskeleton;1.46278134269204e-08!GO:0015986;ATP synthesis coupled proton transport;1.72285674155236e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.72285674155236e-08!GO:0009055;electron carrier activity;1.78484274856336e-08!GO:0042981;regulation of apoptosis;1.86514213360359e-08!GO:0043067;regulation of programmed cell death;2.3894271184607e-08!GO:0016881;acid-amino acid ligase activity;2.68636210755381e-08!GO:0005793;ER-Golgi intermediate compartment;2.86780784667201e-08!GO:0043566;structure-specific DNA binding;3.0581456262817e-08!GO:0006399;tRNA metabolic process;3.14093460890026e-08!GO:0000785;chromatin;3.26623199010333e-08!GO:0006163;purine nucleotide metabolic process;3.8037742268908e-08!GO:0009259;ribonucleotide metabolic process;4.22208827069956e-08!GO:0006333;chromatin assembly or disassembly;4.45423380351522e-08!GO:0008565;protein transporter activity;4.53108573281727e-08!GO:0043069;negative regulation of programmed cell death;4.91603972328139e-08!GO:0006164;purine nucleotide biosynthetic process;5.73918769418482e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.04138523504537e-08!GO:0019829;cation-transporting ATPase activity;7.06538722547104e-08!GO:0000279;M phase;7.73128289733136e-08!GO:0007005;mitochondrion organization and biogenesis;7.97052667584804e-08!GO:0048519;negative regulation of biological process;8.64887630458171e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.6284641704036e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.6284641704036e-08!GO:0050789;regulation of biological process;9.7975633999375e-08!GO:0043066;negative regulation of apoptosis;1.06045631542753e-07!GO:0009260;ribonucleotide biosynthetic process;1.14558099499884e-07!GO:0046930;pore complex;1.26976204512585e-07!GO:0009060;aerobic respiration;1.48866389867912e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.57288135898096e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.59478686614678e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.81487972956939e-07!GO:0009141;nucleoside triphosphate metabolic process;1.8931034492626e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.91222984060025e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.91222984060025e-07!GO:0009150;purine ribonucleotide metabolic process;2.1734677319722e-07!GO:0006916;anti-apoptosis;3.05894281084929e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.35675893272001e-07!GO:0003697;single-stranded DNA binding;3.39507166685481e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.50135322825413e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.50135322825413e-07!GO:0006461;protein complex assembly;3.72958415214336e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.75618006281467e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.17902504016741e-07!GO:0016564;transcription repressor activity;4.17902504016741e-07!GO:0006754;ATP biosynthetic process;4.20347233625114e-07!GO:0006753;nucleoside phosphate metabolic process;4.20347233625114e-07!GO:0051188;cofactor biosynthetic process;4.60256898496725e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.89354108766305e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.17318203716877e-07!GO:0044431;Golgi apparatus part;7.74474702569535e-07!GO:0045333;cellular respiration;8.47542433979976e-07!GO:0006364;rRNA processing;9.37025444060534e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.37387121702403e-07!GO:0006334;nucleosome assembly;1.02729540815788e-06!GO:0032446;protein modification by small protein conjugation;1.04473826187836e-06!GO:0046034;ATP metabolic process;1.11948165905488e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.2637071799233e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.2637071799233e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.2637071799233e-06!GO:0016567;protein ubiquitination;1.27583412007337e-06!GO:0016072;rRNA metabolic process;1.27966503890881e-06!GO:0003714;transcription corepressor activity;1.36996074526476e-06!GO:0006793;phosphorus metabolic process;1.78500522181437e-06!GO:0006796;phosphate metabolic process;1.78500522181437e-06!GO:0043038;amino acid activation;1.83561406324056e-06!GO:0006418;tRNA aminoacylation for protein translation;1.83561406324056e-06!GO:0043039;tRNA aminoacylation;1.83561406324056e-06!GO:0009056;catabolic process;1.84452537182378e-06!GO:0004298;threonine endopeptidase activity;1.96064014856009e-06!GO:0006752;group transfer coenzyme metabolic process;2.11195185401233e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.21457377593459e-06!GO:0048475;coated membrane;2.33539984043987e-06!GO:0030117;membrane coat;2.33539984043987e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.42832259114954e-06!GO:0045259;proton-transporting ATP synthase complex;2.64164956856561e-06!GO:0031497;chromatin assembly;2.9458006327261e-06!GO:0031324;negative regulation of cellular metabolic process;2.98547944538317e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.03246583282526e-06!GO:0051170;nuclear import;3.36853550059725e-06!GO:0005667;transcription factor complex;3.39922874568568e-06!GO:0030120;vesicle coat;4.04138203988922e-06!GO:0030662;coated vesicle membrane;4.04138203988922e-06!GO:0003924;GTPase activity;4.04138203988922e-06!GO:0051246;regulation of protein metabolic process;4.09529946323926e-06!GO:0000245;spliceosome assembly;4.84139248752989e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.72730163097694e-06!GO:0006084;acetyl-CoA metabolic process;7.05564178157197e-06!GO:0006099;tricarboxylic acid cycle;7.35537946201471e-06!GO:0046356;acetyl-CoA catabolic process;7.35537946201471e-06!GO:0006606;protein import into nucleus;7.72340195748503e-06!GO:0009108;coenzyme biosynthetic process;8.48153486007245e-06!GO:0051789;response to protein stimulus;9.9013319325115e-06!GO:0006986;response to unfolded protein;9.9013319325115e-06!GO:0044440;endosomal part;1.0818848726972e-05!GO:0010008;endosome membrane;1.0818848726972e-05!GO:0009892;negative regulation of metabolic process;1.25455527069883e-05!GO:0045786;negative regulation of progression through cell cycle;1.41953836956368e-05!GO:0016779;nucleotidyltransferase activity;1.43927317035841e-05!GO:0016568;chromatin modification;1.45629239062249e-05!GO:0006613;cotranslational protein targeting to membrane;1.49799442880675e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.57959217617543e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.6100441112924e-05!GO:0000151;ubiquitin ligase complex;1.62220720408291e-05!GO:0006261;DNA-dependent DNA replication;1.66420425313157e-05!GO:0007264;small GTPase mediated signal transduction;2.03725822031464e-05!GO:0016787;hydrolase activity;2.19662435184196e-05!GO:0005813;centrosome;2.4567466790666e-05!GO:0003724;RNA helicase activity;2.49351459855248e-05!GO:0005773;vacuole;2.60845939066805e-05!GO:0051168;nuclear export;2.87318021955864e-05!GO:0000139;Golgi membrane;3.13575035804553e-05!GO:0019222;regulation of metabolic process;3.27255699852837e-05!GO:0009117;nucleotide metabolic process;3.2944915306334e-05!GO:0003713;transcription coactivator activity;3.65773587911258e-05!GO:0016310;phosphorylation;4.01022378571278e-05!GO:0051427;hormone receptor binding;4.02836984083399e-05!GO:0031988;membrane-bound vesicle;4.0357172166185e-05!GO:0043623;cellular protein complex assembly;4.65407550088317e-05!GO:0016563;transcription activator activity;4.8188461831123e-05!GO:0048471;perinuclear region of cytoplasm;5.0240019543615e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.1867013697109e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.60025753510693e-05!GO:0008654;phospholipid biosynthetic process;6.15245356472092e-05!GO:0007010;cytoskeleton organization and biogenesis;6.905268350324e-05!GO:0005815;microtubule organizing center;7.43895566412952e-05!GO:0003690;double-stranded DNA binding;7.44591278766821e-05!GO:0016859;cis-trans isomerase activity;7.5900962201001e-05!GO:0009109;coenzyme catabolic process;7.68611612283458e-05!GO:0031982;vesicle;7.87258244114595e-05!GO:0016740;transferase activity;8.02048641650491e-05!GO:0035257;nuclear hormone receptor binding;8.53016675429944e-05!GO:0016481;negative regulation of transcription;8.53016675429944e-05!GO:0005525;GTP binding;8.56893947831216e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.32625080987859e-05!GO:0005769;early endosome;9.45375400849533e-05!GO:0005762;mitochondrial large ribosomal subunit;0.000101761435255895!GO:0000315;organellar large ribosomal subunit;0.000101761435255895!GO:0016126;sterol biosynthetic process;0.000103738518247902!GO:0031410;cytoplasmic vesicle;0.000117647244698189!GO:0003729;mRNA binding;0.00012376611799004!GO:0005798;Golgi-associated vesicle;0.000144891273054318!GO:0006612;protein targeting to membrane;0.000154038816086455!GO:0005788;endoplasmic reticulum lumen;0.000167072828111917!GO:0051187;cofactor catabolic process;0.000169340713997868!GO:0000775;chromosome, pericentric region;0.000179244022581561!GO:0042802;identical protein binding;0.000192805720889126!GO:0006839;mitochondrial transport;0.00020894282171079!GO:0043021;ribonucleoprotein binding;0.000214941241417159!GO:0030176;integral to endoplasmic reticulum membrane;0.000217828507893421!GO:0005657;replication fork;0.000220869710727267!GO:0001558;regulation of cell growth;0.000232041678205393!GO:0005770;late endosome;0.000239946550245643!GO:0030036;actin cytoskeleton organization and biogenesis;0.000248219608346468!GO:0048522;positive regulation of cellular process;0.000262197046939618!GO:0016363;nuclear matrix;0.000284130326151822!GO:0008092;cytoskeletal protein binding;0.000290079327069679!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000290118076697846!GO:0008361;regulation of cell size;0.00029853066640572!GO:0008186;RNA-dependent ATPase activity;0.000321248494163964!GO:0016049;cell growth;0.000351743279761097!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000367476315745152!GO:0000323;lytic vacuole;0.00037482753318438!GO:0005764;lysosome;0.00037482753318438!GO:0000314;organellar small ribosomal subunit;0.000402243210341401!GO:0005763;mitochondrial small ribosomal subunit;0.000402243210341401!GO:0043681;protein import into mitochondrion;0.000430488490416237!GO:0005819;spindle;0.000437024971605881!GO:0006402;mRNA catabolic process;0.000446489766193978!GO:0065007;biological regulation;0.000449074714084515!GO:0031252;leading edge;0.000482089693163356!GO:0051329;interphase of mitotic cell cycle;0.000546793709735781!GO:0006695;cholesterol biosynthetic process;0.000557792021874602!GO:0051325;interphase;0.000566891293492889!GO:0006626;protein targeting to mitochondrion;0.000586095474695904!GO:0005874;microtubule;0.000627502684036802!GO:0016853;isomerase activity;0.000656571123645951!GO:0016044;membrane organization and biogenesis;0.000675942856933244!GO:0019899;enzyme binding;0.000696004092667239!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000708799864457596!GO:0032561;guanyl ribonucleotide binding;0.000733197896460615!GO:0019001;guanyl nucleotide binding;0.000733197896460615!GO:0006302;double-strand break repair;0.000761751520863834!GO:0004576;oligosaccharyl transferase activity;0.000761751520863834!GO:0006984;ER-nuclear signaling pathway;0.00076678501631673!GO:0007051;spindle organization and biogenesis;0.00078592236206677!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00078592236206677!GO:0007243;protein kinase cascade;0.00078979446715059!GO:0005885;Arp2/3 protein complex;0.000806246738557812!GO:0006414;translational elongation;0.000960094816714879!GO:0004004;ATP-dependent RNA helicase activity;0.000961153739604481!GO:0005048;signal sequence binding;0.00103875464724815!GO:0008250;oligosaccharyl transferase complex;0.00105196902202799!GO:0016197;endosome transport;0.00105545911430488!GO:0008094;DNA-dependent ATPase activity;0.00110891321774483!GO:0065009;regulation of a molecular function;0.00110891321774483!GO:0045941;positive regulation of transcription;0.00117323493311937!GO:0048468;cell development;0.00124823544688723!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00124899853204168!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00127363906110269!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0013180676293869!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0013180676293869!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0013180676293869!GO:0030029;actin filament-based process;0.00136975347834657!GO:0033116;ER-Golgi intermediate compartment membrane;0.00137715934076546!GO:0045454;cell redox homeostasis;0.00139351595763146!GO:0045893;positive regulation of transcription, DNA-dependent;0.00146208862795055!GO:0030867;rough endoplasmic reticulum membrane;0.0014792586990257!GO:0006891;intra-Golgi vesicle-mediated transport;0.00158805437702779!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00158862021112053!GO:0031323;regulation of cellular metabolic process;0.00160153022973213!GO:0015980;energy derivation by oxidation of organic compounds;0.00168790933452037!GO:0006350;transcription;0.00173408893147055!GO:0046870;cadmium ion binding;0.00176408263904882!GO:0046489;phosphoinositide biosynthetic process;0.00177054726887911!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00191046279322285!GO:0015992;proton transport;0.00199149859256579!GO:0003899;DNA-directed RNA polymerase activity;0.00207199257668365!GO:0000786;nucleosome;0.00212458936770968!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00214107265710876!GO:0006818;hydrogen transport;0.00216781083814651!GO:0046483;heterocycle metabolic process;0.00217207360071667!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00217207360071667!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00223359186246996!GO:0005637;nuclear inner membrane;0.00224740131491541!GO:0006401;RNA catabolic process;0.00235542452618671!GO:0048500;signal recognition particle;0.00239520393790917!GO:0016491;oxidoreductase activity;0.00241477028123511!GO:0031124;mRNA 3'-end processing;0.00245334834196715!GO:0005684;U2-dependent spliceosome;0.00259406634140297!GO:0051252;regulation of RNA metabolic process;0.00261025713265907!GO:0030118;clathrin coat;0.00261292969058562!GO:0006405;RNA export from nucleus;0.00287100878628353!GO:0035258;steroid hormone receptor binding;0.00301401964336013!GO:0032508;DNA duplex unwinding;0.00320071016572834!GO:0032392;DNA geometric change;0.00320071016572834!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00322815050165164!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00322815050165164!GO:0046474;glycerophospholipid biosynthetic process;0.0033102823893053!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00345850910729157!GO:0045892;negative regulation of transcription, DNA-dependent;0.00349136124500939!GO:0008234;cysteine-type peptidase activity;0.00377314200820445!GO:0048487;beta-tubulin binding;0.00383484694613308!GO:0018196;peptidyl-asparagine modification;0.00396313289149644!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00396313289149644!GO:0008033;tRNA processing;0.00402041165903207!GO:0009165;nucleotide biosynthetic process;0.00423523307869831!GO:0031072;heat shock protein binding;0.00437205680878497!GO:0051087;chaperone binding;0.00473840711886393!GO:0009112;nucleobase metabolic process;0.00497331906685675!GO:0051920;peroxiredoxin activity;0.00500372178019925!GO:0008139;nuclear localization sequence binding;0.00509004450762056!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00511625273977161!GO:0003678;DNA helicase activity;0.00554694578769425!GO:0030133;transport vesicle;0.00570053838924411!GO:0030433;ER-associated protein catabolic process;0.00570053838924411!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00570053838924411!GO:0019843;rRNA binding;0.00574871958355065!GO:0008312;7S RNA binding;0.00578963050508302!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00580690835629019!GO:0040008;regulation of growth;0.0058666668180393!GO:0003682;chromatin binding;0.00596499448576872!GO:0006611;protein export from nucleus;0.00596499448576872!GO:0000049;tRNA binding;0.00606554109403584!GO:0030132;clathrin coat of coated pit;0.00606554109403584!GO:0051052;regulation of DNA metabolic process;0.0063605446899652!GO:0044452;nucleolar part;0.00670776025230336!GO:0030968;unfolded protein response;0.0067892749983871!GO:0005905;coated pit;0.00706101323726018!GO:0006268;DNA unwinding during replication;0.00708617380318553!GO:0006091;generation of precursor metabolites and energy;0.00718397569438833!GO:0006352;transcription initiation;0.00725719133862676!GO:0016272;prefoldin complex;0.00730197194575574!GO:0030134;ER to Golgi transport vesicle;0.00764869648292032!GO:0010468;regulation of gene expression;0.00771278895335874!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00785004282405315!GO:0045047;protein targeting to ER;0.00785004282405315!GO:0045792;negative regulation of cell size;0.00806050762820013!GO:0008632;apoptotic program;0.00809785623609455!GO:0004674;protein serine/threonine kinase activity;0.00818214044573382!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00825712137217138!GO:0015399;primary active transmembrane transporter activity;0.00825712137217138!GO:0031123;RNA 3'-end processing;0.00832415750599088!GO:0006383;transcription from RNA polymerase III promoter;0.00839016732538158!GO:0008610;lipid biosynthetic process;0.00846864221006955!GO:0007265;Ras protein signal transduction;0.00852350843628191!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00853426362003338!GO:0000059;protein import into nucleus, docking;0.00887063888472296!GO:0030658;transport vesicle membrane;0.00889700137515757!GO:0046983;protein dimerization activity;0.00892094805780608!GO:0031968;organelle outer membrane;0.00898495742338637!GO:0030308;negative regulation of cell growth;0.00936977837056133!GO:0030384;phosphoinositide metabolic process;0.00971330784895456!GO:0009116;nucleoside metabolic process;0.00987724446973761!GO:0046467;membrane lipid biosynthetic process;0.0102659436577606!GO:0003746;translation elongation factor activity;0.0104457116614415!GO:0031901;early endosome membrane;0.0104740272586977!GO:0016791;phosphoric monoester hydrolase activity;0.0105341454119536!GO:0009967;positive regulation of signal transduction;0.0105778343949574!GO:0043022;ribosome binding;0.0107797690486595!GO:0043488;regulation of mRNA stability;0.0109043686733199!GO:0043487;regulation of RNA stability;0.0109043686733199!GO:0048518;positive regulation of biological process;0.0109638637399626!GO:0019867;outer membrane;0.0110921005811728!GO:0030663;COPI coated vesicle membrane;0.0110921005811728!GO:0030126;COPI vesicle coat;0.0110921005811728!GO:0007017;microtubule-based process;0.0112512039749787!GO:0006950;response to stress;0.0115839359271311!GO:0007052;mitotic spindle organization and biogenesis;0.0117489584528884!GO:0016281;eukaryotic translation initiation factor 4F complex;0.011960885898655!GO:0015631;tubulin binding;0.0119882963118432!GO:0006417;regulation of translation;0.012033784738212!GO:0005083;small GTPase regulator activity;0.0121060100064727!GO:0016584;nucleosome positioning;0.0121629386279661!GO:0045045;secretory pathway;0.0122199508401229!GO:0006144;purine base metabolic process;0.0122277650218297!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0128230697658675!GO:0007006;mitochondrial membrane organization and biogenesis;0.0130482157817811!GO:0030127;COPII vesicle coat;0.0130482157817811!GO:0012507;ER to Golgi transport vesicle membrane;0.0130482157817811!GO:0043065;positive regulation of apoptosis;0.0134281625072995!GO:0022890;inorganic cation transmembrane transporter activity;0.013675105902554!GO:0006767;water-soluble vitamin metabolic process;0.0136938653208988!GO:0006650;glycerophospholipid metabolic process;0.0139159930368172!GO:0004721;phosphoprotein phosphatase activity;0.0141756811615689!GO:0003711;transcription elongation regulator activity;0.0145366466577744!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0151015901952398!GO:0032774;RNA biosynthetic process;0.0153386225565586!GO:0008601;protein phosphatase type 2A regulator activity;0.0158737873124864!GO:0006378;mRNA polyadenylation;0.016047297672703!GO:0006351;transcription, DNA-dependent;0.0169150252776568!GO:0006509;membrane protein ectodomain proteolysis;0.0171352499523934!GO:0033619;membrane protein proteolysis;0.0171352499523934!GO:0030660;Golgi-associated vesicle membrane;0.0172259341819295!GO:0005869;dynactin complex;0.0174408771438149!GO:0006376;mRNA splice site selection;0.0174408771438149!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0174408771438149!GO:0000792;heterochromatin;0.0182641891321172!GO:0007242;intracellular signaling cascade;0.0183399058888099!GO:0017166;vinculin binding;0.0187548425221591!GO:0050662;coenzyme binding;0.0188519554041336!GO:0030518;steroid hormone receptor signaling pathway;0.0189499887663647!GO:0007050;cell cycle arrest;0.0191129402970782!GO:0043068;positive regulation of programmed cell death;0.0191707017438046!GO:0030521;androgen receptor signaling pathway;0.0191707017438046!GO:0008022;protein C-terminus binding;0.0193652514915796!GO:0005832;chaperonin-containing T-complex;0.0195091355727004!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0204008962155453!GO:0006310;DNA recombination;0.021248327137694!GO:0030137;COPI-coated vesicle;0.0213145684465554!GO:0006506;GPI anchor biosynthetic process;0.0214978867222553!GO:0005741;mitochondrial outer membrane;0.02167072799632!GO:0031625;ubiquitin protein ligase binding;0.0218021271502516!GO:0005791;rough endoplasmic reticulum;0.0227196545327036!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0231281790200555!GO:0043284;biopolymer biosynthetic process;0.0233894327155952!GO:0033673;negative regulation of kinase activity;0.0234461938263126!GO:0006469;negative regulation of protein kinase activity;0.0234461938263126!GO:0042026;protein refolding;0.0244469663953295!GO:0006595;polyamine metabolic process;0.02498783991862!GO:0007059;chromosome segregation;0.0252389282371924!GO:0050811;GABA receptor binding;0.0255727181543324!GO:0003684;damaged DNA binding;0.0256389837253576!GO:0000075;cell cycle checkpoint;0.0270599649335864!GO:0005669;transcription factor TFIID complex;0.0275035745567976!GO:0008637;apoptotic mitochondrial changes;0.0276014618228556!GO:0030131;clathrin adaptor complex;0.0282923634933433!GO:0051540;metal cluster binding;0.0282974699706195!GO:0051536;iron-sulfur cluster binding;0.0282974699706195!GO:0001726;ruffle;0.0286523544402703!GO:0043596;nuclear replication fork;0.0287716854407999!GO:0050790;regulation of catalytic activity;0.0287843559258271!GO:0006505;GPI anchor metabolic process;0.0287888380562867!GO:0005856;cytoskeleton;0.0294519918727595!GO:0006516;glycoprotein catabolic process;0.0294686891986624!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.029537922032371!GO:0000096;sulfur amino acid metabolic process;0.0296866354284683!GO:0008287;protein serine/threonine phosphatase complex;0.0302438540281789!GO:0016311;dephosphorylation;0.0306528288196383!GO:0000159;protein phosphatase type 2A complex;0.0308317108700264!GO:0003702;RNA polymerase II transcription factor activity;0.0308368137374174!GO:0005099;Ras GTPase activator activity;0.0308368137374174!GO:0030119;AP-type membrane coat adaptor complex;0.0316802261044318!GO:0031529;ruffle organization and biogenesis;0.0317329671094087!GO:0005938;cell cortex;0.0317600812958257!GO:0007030;Golgi organization and biogenesis;0.0318477945522047!GO:0045926;negative regulation of growth;0.0320835976451459!GO:0030027;lamellipodium;0.0320997222161258!GO:0016251;general RNA polymerase II transcription factor activity;0.0322090961414525!GO:0006740;NADPH regeneration;0.0329099946411982!GO:0006098;pentose-phosphate shunt;0.0329099946411982!GO:0016018;cyclosporin A binding;0.0338837265522724!GO:0051287;NAD binding;0.0338880362200446!GO:0051059;NF-kappaB binding;0.0342259891402709!GO:0043624;cellular protein complex disassembly;0.0342389501005116!GO:0006284;base-excision repair;0.0344761336688149!GO:0030913;paranodal junction assembly;0.0357815487239589!GO:0032288;myelin formation;0.0357815487239589!GO:0006497;protein amino acid lipidation;0.036139928609189!GO:0000339;RNA cap binding;0.036352157145038!GO:0043492;ATPase activity, coupled to movement of substances;0.0372790474991264!GO:0006892;post-Golgi vesicle-mediated transport;0.0373473894760243!GO:0008538;proteasome activator activity;0.0373561764633838!GO:0000776;kinetochore;0.0374915031143656!GO:0005784;translocon complex;0.0374915031143656!GO:0003779;actin binding;0.0377630235364357!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0380329719395865!GO:0007034;vacuolar transport;0.0389821011572906!GO:0032984;macromolecular complex disassembly;0.0395207524348533!GO:0007041;lysosomal transport;0.0406620186013033!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0406620186013033!GO:0005862;muscle thin filament tropomyosin;0.0407289998213026!GO:0051348;negative regulation of transferase activity;0.0408192183564067!GO:0022415;viral reproductive process;0.0420493391845616!GO:0006541;glutamine metabolic process;0.0422429341751124!GO:0019783;small conjugating protein-specific protease activity;0.0422429341751124!GO:0051098;regulation of binding;0.0422429341751124!GO:0008168;methyltransferase activity;0.0428908015967137!GO:0006275;regulation of DNA replication;0.0434023569807235!GO:0050681;androgen receptor binding;0.0436041836747706!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0436041836747706!GO:0016741;transferase activity, transferring one-carbon groups;0.0436041836747706!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0437517339265522!GO:0030125;clathrin vesicle coat;0.0439246103967591!GO:0030665;clathrin coated vesicle membrane;0.0439246103967591!GO:0004527;exonuclease activity;0.0450924492455396!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0452853267585754!GO:0006607;NLS-bearing substrate import into nucleus;0.0458907817195052!GO:0031326;regulation of cellular biosynthetic process;0.0458907817195052!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0460511984666437!GO:0040029;regulation of gene expression, epigenetic;0.0464669820685644!GO:0008047;enzyme activator activity;0.047641807517382!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0481566686057448!GO:0000082;G1/S transition of mitotic cell cycle;0.0484941199295595!GO:0030880;RNA polymerase complex;0.0486812100583399!GO:0031301;integral to organelle membrane;0.0496943567006357 | |||
|sample_id=10639 | |sample_id=10639 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=ovary | |sample_tissue=ovary | ||
|top_motifs=NKX2-1,4:2.43253631937;SNAI1..3:2.20491530576;ZEB1:1.97140677917;MYOD1:1.87443678974;XCPE1{core}:1.59850860404;TBX4,5:1.54986826322;RXRA_VDR{dimer}:1.47445510904;SP1:1.4140904524;FOXQ1:1.29378000869;TEAD1:1.26389756543;MTF1:1.19432177098;EP300:1.1142122466;ATF4:1.09057524009;CDC5L:1.08919061187;NFY{A,B,C}:1.06766622371;ESRRA:1.04595313268;ELK1,4_GABP{A,B1}:1.01602357722;EGR1..3:0.884739695804;HIF1A:0.854938009115;PAX5:0.837466090772;TEF:0.83638926272;IKZF1:0.755623421468;FOX{I1,J2}:0.722929800271;ONECUT1,2:0.703977593888;NKX3-2:0.682580657975;GFI1:0.673408337064;E2F1..5:0.66669648323;NKX6-1,2:0.567982889726;FOX{D1,D2}:0.560495200174;ARID5B:0.55601790053;TFDP1:0.534548587727;BPTF:0.524712069758;PAX4:0.518195186867;HBP1_HMGB_SSRP1_UBTF:0.475996983466;UFEwm:0.459168814763;NR6A1:0.43753148771;HIC1:0.434200710806;POU6F1:0.400516993713;ATF6:0.389121354874;TFAP2{A,C}:0.368538793551;NFKB1_REL_RELA:0.359095143065;TFCP2:0.353457805558;RFX1:0.342931643684;MAZ:0.341919531572;LMO2:0.338874903154;SOX17:0.330960618049;FOXN1:0.324469546942;AHR_ARNT_ARNT2:0.319454968472;ATF5_CREB3:0.317033599902;FOXO1,3,4:0.314900432081;POU1F1:0.305730522768;FOXP1:0.297480232198;LHX3,4:0.27714497559;LEF1_TCF7_TCF7L1,2:0.27192119258;PITX1..3:0.261618700011;FOS_FOS{B,L1}_JUN{B,D}:0.248492790079;CREB1:0.233766015833;IRF7:0.20431569809;ESR1:0.200625604155;MAFB:0.200588505219;ZBTB16:0.19960482535;NKX3-1:0.191913269659;ZIC1..3:0.186781023489;RORA:0.177502616526;TP53:0.168094607482;STAT2,4,6:0.136922967674;TAL1_TCF{3,4,12}:0.131089555783;TFAP2B:0.128349466954;NKX2-3_NKX2-5:0.117073421926;RBPJ:0.111948894717;BACH2:0.0919100101362;EVI1:0.0917162832049;HMX1:0.0845557733401;XBP1:0.0784727562347;MTE{core}:0.0597503514141;FOSL2:0.0572336806491;MED-1{core}:0.052848943677;IRF1,2:0.0516054607953;HSF1,2:0.0413453381511;RFX2..5_RFXANK_RFXAP:0.0343064987328;TBP:0.0328786237629;ZNF148:0.0324189373206;ZBTB6:0.00217364095136;POU2F1..3:-0.000769046747277;TOPORS:-0.0250048944576;AR:-0.0376762314022;ZNF143:-0.0436034151604;POU3F1..4:-0.0459284802729;CRX:-0.0697467786478;HNF1A:-0.0715829662696;TLX2:-0.0793314903622;bHLH_family:-0.086931620925;ALX4:-0.0934260852355;NFIL3:-0.100361410883;FOXD3:-0.10200419126;NFE2:-0.110146805055;HOX{A4,D4}:-0.119372119737;VSX1,2:-0.119780078835;MYB:-0.122715190665;MEF2{A,B,C,D}:-0.142073620212;BREu{core}:-0.149616211231;EBF1:-0.152737167239;ZNF384:-0.159920186483;SPZ1:-0.160347834311;PAX8:-0.182448083153;GLI1..3:-0.185105944227;TLX1..3_NFIC{dimer}:-0.192236290267;MYFfamily:-0.205536200469;GCM1,2:-0.224386835427;SRF:-0.228935075859;ATF2:-0.261703260766;HAND1,2:-0.287320213016;NRF1:-0.293191103547;DBP:-0.316165063554;PAX2:-0.31756668794;OCT4_SOX2{dimer}:-0.319353142028;T:-0.319942974359;JUN:-0.323023862038;SOX{8,9,10}:-0.335949679729;ADNP_IRX_SIX_ZHX:-0.341051253467;IKZF2:-0.341724414878;ELF1,2,4:-0.342485839191;HOXA9_MEIS1:-0.344555473475;FOX{F1,F2,J1}:-0.349874326209;CDX1,2,4:-0.352113781892;HOX{A5,B5}:-0.353850198148;HLF:-0.368873554486;PRDM1:-0.385902939373;CEBPA,B_DDIT3:-0.388328815694;GTF2I:-0.397918410489;FOXL1:-0.398861742762;SOX2:-0.406979683438;AIRE:-0.412924060114;RREB1:-0.41384838117;NR3C1:-0.415547255121;REST:-0.41840477572;GTF2A1,2:-0.419057361353;HNF4A_NR2F1,2:-0.431154256934;ZNF423:-0.474901915127;HOX{A6,A7,B6,B7}:-0.483833973567;SPI1:-0.506937960411;MZF1:-0.518487218178;FOXM1:-0.519183357111;YY1:-0.562891691786;PPARG:-0.573367997916;HMGA1,2:-0.601750306957;GFI1B:-0.604257409865;NKX2-2,8:-0.643357701331;NFE2L2:-0.645148189777;KLF4:-0.645851459799;NFE2L1:-0.656509044479;SREBF1,2:-0.657934589981;GATA6:-0.678237713386;PATZ1:-0.687468048083;PRRX1,2:-0.68764007743;ZFP161:-0.690404857883;SPIB:-0.693128932395;NR5A1,2:-0.702305746555;ETS1,2:-0.70323424609;PAX3,7:-0.720309187603;EN1,2:-0.723256502882;RXR{A,B,G}:-0.727701275803;SMAD1..7,9:-0.729911370751;STAT5{A,B}:-0.732366189983;CUX2:-0.756719431008;SOX5:-0.766658905523;NFATC1..3:-0.783176026869;STAT1,3:-0.785086009106;TGIF1:-0.805842132725;RUNX1..3:-0.881031999706;NHLH1,2:-0.886428532693;NANOG:-0.898243534288;PAX1,9:-0.907742994807;HES1:-0.921461391343;GZF1:-0.934219436595;NR1H4:-0.950644983268;PDX1:-0.972157494363;FOXA2:-0.977907588535;POU5F1:-0.990257374168;PBX1:-0.991853418538;FOXP3:-1.00377395325;ALX1:-1.00783106093;NFIX:-1.05845433026;MYBL2:-1.05901080377;GATA4:-1.12472790817;DMAP1_NCOR{1,2}_SMARC:-1.14184831859;TFAP4:-1.14550374468;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2675691931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.33153290764;PAX6:-1.39509864443;NANOG{mouse}:-1.42102327225;ZNF238:-1.87474643162 | |top_motifs=NKX2-1,4:2.43253631937;SNAI1..3:2.20491530576;ZEB1:1.97140677917;MYOD1:1.87443678974;XCPE1{core}:1.59850860404;TBX4,5:1.54986826322;RXRA_VDR{dimer}:1.47445510904;SP1:1.4140904524;FOXQ1:1.29378000869;TEAD1:1.26389756543;MTF1:1.19432177098;EP300:1.1142122466;ATF4:1.09057524009;CDC5L:1.08919061187;NFY{A,B,C}:1.06766622371;ESRRA:1.04595313268;ELK1,4_GABP{A,B1}:1.01602357722;EGR1..3:0.884739695804;HIF1A:0.854938009115;PAX5:0.837466090772;TEF:0.83638926272;IKZF1:0.755623421468;FOX{I1,J2}:0.722929800271;ONECUT1,2:0.703977593888;NKX3-2:0.682580657975;GFI1:0.673408337064;E2F1..5:0.66669648323;NKX6-1,2:0.567982889726;FOX{D1,D2}:0.560495200174;ARID5B:0.55601790053;TFDP1:0.534548587727;BPTF:0.524712069758;PAX4:0.518195186867;HBP1_HMGB_SSRP1_UBTF:0.475996983466;UFEwm:0.459168814763;NR6A1:0.43753148771;HIC1:0.434200710806;POU6F1:0.400516993713;ATF6:0.389121354874;TFAP2{A,C}:0.368538793551;NFKB1_REL_RELA:0.359095143065;TFCP2:0.353457805558;RFX1:0.342931643684;MAZ:0.341919531572;LMO2:0.338874903154;SOX17:0.330960618049;FOXN1:0.324469546942;AHR_ARNT_ARNT2:0.319454968472;ATF5_CREB3:0.317033599902;FOXO1,3,4:0.314900432081;POU1F1:0.305730522768;FOXP1:0.297480232198;LHX3,4:0.27714497559;LEF1_TCF7_TCF7L1,2:0.27192119258;PITX1..3:0.261618700011;FOS_FOS{B,L1}_JUN{B,D}:0.248492790079;CREB1:0.233766015833;IRF7:0.20431569809;ESR1:0.200625604155;MAFB:0.200588505219;ZBTB16:0.19960482535;NKX3-1:0.191913269659;ZIC1..3:0.186781023489;RORA:0.177502616526;TP53:0.168094607482;STAT2,4,6:0.136922967674;TAL1_TCF{3,4,12}:0.131089555783;TFAP2B:0.128349466954;NKX2-3_NKX2-5:0.117073421926;RBPJ:0.111948894717;BACH2:0.0919100101362;EVI1:0.0917162832049;HMX1:0.0845557733401;XBP1:0.0784727562347;MTE{core}:0.0597503514141;FOSL2:0.0572336806491;MED-1{core}:0.052848943677;IRF1,2:0.0516054607953;HSF1,2:0.0413453381511;RFX2..5_RFXANK_RFXAP:0.0343064987328;TBP:0.0328786237629;ZNF148:0.0324189373206;ZBTB6:0.00217364095136;POU2F1..3:-0.000769046747277;TOPORS:-0.0250048944576;AR:-0.0376762314022;ZNF143:-0.0436034151604;POU3F1..4:-0.0459284802729;CRX:-0.0697467786478;HNF1A:-0.0715829662696;TLX2:-0.0793314903622;bHLH_family:-0.086931620925;ALX4:-0.0934260852355;NFIL3:-0.100361410883;FOXD3:-0.10200419126;NFE2:-0.110146805055;HOX{A4,D4}:-0.119372119737;VSX1,2:-0.119780078835;MYB:-0.122715190665;MEF2{A,B,C,D}:-0.142073620212;BREu{core}:-0.149616211231;EBF1:-0.152737167239;ZNF384:-0.159920186483;SPZ1:-0.160347834311;PAX8:-0.182448083153;GLI1..3:-0.185105944227;TLX1..3_NFIC{dimer}:-0.192236290267;MYFfamily:-0.205536200469;GCM1,2:-0.224386835427;SRF:-0.228935075859;ATF2:-0.261703260766;HAND1,2:-0.287320213016;NRF1:-0.293191103547;DBP:-0.316165063554;PAX2:-0.31756668794;OCT4_SOX2{dimer}:-0.319353142028;T:-0.319942974359;JUN:-0.323023862038;SOX{8,9,10}:-0.335949679729;ADNP_IRX_SIX_ZHX:-0.341051253467;IKZF2:-0.341724414878;ELF1,2,4:-0.342485839191;HOXA9_MEIS1:-0.344555473475;FOX{F1,F2,J1}:-0.349874326209;CDX1,2,4:-0.352113781892;HOX{A5,B5}:-0.353850198148;HLF:-0.368873554486;PRDM1:-0.385902939373;CEBPA,B_DDIT3:-0.388328815694;GTF2I:-0.397918410489;FOXL1:-0.398861742762;SOX2:-0.406979683438;AIRE:-0.412924060114;RREB1:-0.41384838117;NR3C1:-0.415547255121;REST:-0.41840477572;GTF2A1,2:-0.419057361353;HNF4A_NR2F1,2:-0.431154256934;ZNF423:-0.474901915127;HOX{A6,A7,B6,B7}:-0.483833973567;SPI1:-0.506937960411;MZF1:-0.518487218178;FOXM1:-0.519183357111;YY1:-0.562891691786;PPARG:-0.573367997916;HMGA1,2:-0.601750306957;GFI1B:-0.604257409865;NKX2-2,8:-0.643357701331;NFE2L2:-0.645148189777;KLF4:-0.645851459799;NFE2L1:-0.656509044479;SREBF1,2:-0.657934589981;GATA6:-0.678237713386;PATZ1:-0.687468048083;PRRX1,2:-0.68764007743;ZFP161:-0.690404857883;SPIB:-0.693128932395;NR5A1,2:-0.702305746555;ETS1,2:-0.70323424609;PAX3,7:-0.720309187603;EN1,2:-0.723256502882;RXR{A,B,G}:-0.727701275803;SMAD1..7,9:-0.729911370751;STAT5{A,B}:-0.732366189983;CUX2:-0.756719431008;SOX5:-0.766658905523;NFATC1..3:-0.783176026869;STAT1,3:-0.785086009106;TGIF1:-0.805842132725;RUNX1..3:-0.881031999706;NHLH1,2:-0.886428532693;NANOG:-0.898243534288;PAX1,9:-0.907742994807;HES1:-0.921461391343;GZF1:-0.934219436595;NR1H4:-0.950644983268;PDX1:-0.972157494363;FOXA2:-0.977907588535;POU5F1:-0.990257374168;PBX1:-0.991853418538;FOXP3:-1.00377395325;ALX1:-1.00783106093;NFIX:-1.05845433026;MYBL2:-1.05901080377;GATA4:-1.12472790817;DMAP1_NCOR{1,2}_SMARC:-1.14184831859;TFAP4:-1.14550374468;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2675691931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.33153290764;PAX6:-1.39509864443;NANOG{mouse}:-1.42102327225;ZNF238:-1.87474643162 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10639-108I9;search_select_hide=table117:FF:10639-108I9 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | serous adenocarcinoma cell line:JHOS-2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11746 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11746
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11746
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.103 |
| 10 | 10 | 0.351 |
| 100 | 100 | 0.969 |
| 101 | 101 | 0.297 |
| 102 | 102 | 0.51 |
| 103 | 103 | 0.101 |
| 104 | 104 | 0.707 |
| 105 | 105 | 0.622 |
| 106 | 106 | 0.793 |
| 107 | 107 | 0.586 |
| 108 | 108 | 0.812 |
| 109 | 109 | 0.564 |
| 11 | 11 | 0.0335 |
| 110 | 110 | 0.13 |
| 111 | 111 | 0.255 |
| 112 | 112 | 0.169 |
| 113 | 113 | 0.608 |
| 114 | 114 | 0.033 |
| 115 | 115 | 0.811 |
| 116 | 116 | 0.469 |
| 117 | 117 | 0.308 |
| 118 | 118 | 0.813 |
| 119 | 119 | 0.219 |
| 12 | 12 | 0.594 |
| 120 | 120 | 0.496 |
| 121 | 121 | 0.481 |
| 122 | 122 | 0.671 |
| 123 | 123 | 0.0933 |
| 124 | 124 | 0.0201 |
| 125 | 125 | 0.426 |
| 126 | 126 | 0.962 |
| 127 | 127 | 0.758 |
| 128 | 128 | 0.187 |
| 129 | 129 | 0.758 |
| 13 | 13 | 0.657 |
| 130 | 130 | 0.702 |
| 131 | 131 | 0.463 |
| 132 | 132 | 0.51 |
| 133 | 133 | 0.06 |
| 134 | 134 | 0.326 |
| 135 | 135 | 0.00478 |
| 136 | 136 | 0.0109 |
| 137 | 137 | 0.249 |
| 138 | 138 | 0.0769 |
| 139 | 139 | 0.00268 |
| 14 | 14 | 0.687 |
| 140 | 140 | 0.109 |
| 141 | 141 | 0.84 |
| 142 | 142 | 0.614 |
| 143 | 143 | 5.74488e-4 |
| 144 | 144 | 0.253 |
| 145 | 145 | 0.365 |
| 146 | 146 | 0.998 |
| 147 | 147 | 0.684 |
| 148 | 148 | 0.0428 |
| 149 | 149 | 0.103 |
| 15 | 15 | 0.196 |
| 150 | 150 | 0.853 |
| 151 | 151 | 0.406 |
| 152 | 152 | 0.121 |
| 153 | 153 | 0.298 |
| 154 | 154 | 0.97 |
| 155 | 155 | 0.548 |
| 156 | 156 | 0.691 |
| 157 | 157 | 0.579 |
| 158 | 158 | 0.388 |
| 159 | 159 | 0.968 |
| 16 | 16 | 0.648 |
| 160 | 160 | 0.125 |
| 161 | 161 | 0.177 |
| 162 | 162 | 0.457 |
| 163 | 163 | 0.44 |
| 164 | 164 | 0.682 |
| 165 | 165 | 0.993 |
| 166 | 166 | 0.186 |
| 167 | 167 | 0.335 |
| 168 | 168 | 0.987 |
| 169 | 169 | 0.313 |
| 17 | 17 | 0.424 |
| 18 | 18 | 0.047 |
| 19 | 19 | 0.11 |
| 2 | 2 | 0.626 |
| 20 | 20 | 0.22 |
| 21 | 21 | 0.861 |
| 22 | 22 | 0.381 |
| 23 | 23 | 0.194 |
| 24 | 24 | 0.896 |
| 25 | 25 | 0.589 |
| 26 | 26 | 0.898 |
| 27 | 27 | 0.341 |
| 28 | 28 | 0.705 |
| 29 | 29 | 0.868 |
| 3 | 3 | 0.0642 |
| 30 | 30 | 0.78 |
| 31 | 31 | 0.213 |
| 32 | 32 | 0.00535 |
| 33 | 33 | 0.607 |
| 34 | 34 | 0.23 |
| 35 | 35 | 0.0195 |
| 36 | 36 | 0.0145 |
| 37 | 37 | 0.739 |
| 38 | 38 | 0.569 |
| 39 | 39 | 0.827 |
| 4 | 4 | 0.42 |
| 40 | 40 | 0.377 |
| 41 | 41 | 0.051 |
| 42 | 42 | 0.265 |
| 43 | 43 | 0.136 |
| 44 | 44 | 0.757 |
| 45 | 45 | 0.82 |
| 46 | 46 | 0.13 |
| 47 | 47 | 0.15 |
| 48 | 48 | 0.223 |
| 49 | 49 | 0.0661 |
| 5 | 5 | 0.14 |
| 50 | 50 | 0.999 |
| 51 | 51 | 0.137 |
| 52 | 52 | 0.531 |
| 53 | 53 | 0.255 |
| 54 | 54 | 0.111 |
| 55 | 55 | 0.728 |
| 56 | 56 | 0.554 |
| 57 | 57 | 0.459 |
| 58 | 58 | 0.248 |
| 59 | 59 | 0.086 |
| 6 | 6 | 0.892 |
| 60 | 60 | 0.512 |
| 61 | 61 | 0.731 |
| 62 | 62 | 0.0472 |
| 63 | 63 | 0.485 |
| 64 | 64 | 0.173 |
| 65 | 65 | 0.179 |
| 66 | 66 | 0.974 |
| 67 | 67 | 0.7 |
| 68 | 68 | 5.87428e-4 |
| 69 | 69 | 0.962 |
| 7 | 7 | 0.463 |
| 70 | 70 | 0.147 |
| 71 | 71 | 0.368 |
| 72 | 72 | 0.49 |
| 73 | 73 | 0.87 |
| 74 | 74 | 0.0099 |
| 75 | 75 | 0.31 |
| 76 | 76 | 0.739 |
| 77 | 77 | 0.555 |
| 78 | 78 | 0.965 |
| 79 | 79 | 0.0216 |
| 8 | 8 | 0.0591 |
| 80 | 80 | 0.13 |
| 81 | 81 | 0.0782 |
| 82 | 82 | 0.00437 |
| 83 | 83 | 0.191 |
| 84 | 84 | 0.883 |
| 85 | 85 | 0.0175 |
| 86 | 86 | 0.194 |
| 87 | 87 | 0.14 |
| 88 | 88 | 0.549 |
| 89 | 89 | 0.343 |
| 9 | 9 | 0.143 |
| 90 | 90 | 0.244 |
| 91 | 91 | 0.131 |
| 92 | 92 | 0.214 |
| 93 | 93 | 0.49 |
| 94 | 94 | 0.0137 |
| 95 | 95 | 0.665 |
| 96 | 96 | 0.0728 |
| 97 | 97 | 0.942 |
| 98 | 98 | 0.144 |
| 99 | 99 | 0.446 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11746
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103803 serous adenocarcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103803 (serous adenocarcinoma cell line sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)
