FF:10691-109F7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005211 | |||
|accession_numbers=CAGE;DRX007932;DRR008804;DRZ000229;DRZ001614;DRZ011579;DRZ012964 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0002379 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093,DOID:3620,DOID:3565 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0104398 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0104398 | |fonse_cell_line=FF:0104398 | ||
|fonse_cell_line_closure=FF:0104398 | |fonse_cell_line_closure=FF:0104398 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10691-109F7 | |id=FF:10691-109F7 | ||
|is_a=CL:0002379;;EFO:0002091;;FF: | |is_a=CL:0002379;;EFO:0002091;;FF:0000210;;FF:0104398 | ||
|is_obsolete= | |||
|library_id=CNhs11945 | |||
|library_id_phase_based=2:CNhs11945 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10691 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10691 | |||
|name=meningioma cell line:HKBMM | |name=meningioma cell line:HKBMM | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11945,LSID836,release011,COMPLETED | |profile_hcage=CNhs11945,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.21136554595136,0,0.0458802122415155,0,0,0.177406538720834,0,0.0603624366137065,0.266770111481116,0,0,0,0,0,0,0,0,0,0,0.0917604244830311,0,0,0.455037794746711,0,0,0,0,0,0.484467966711621,0,0,0.155083103869433,0,0,0,0,0,0,0,0,0,0,0.49379146912454,0,0.220154605185962,0.240402582987377,0,0,0,0,0,0,0,0.119804825711313,0,0,0,0,0,0,0,0.58100246537204,0,0,-0.00558320273006586,0,0,0,0,0,0,0,0,0.231927463162342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0917604244830311,0,0,0,0.219809308351133,0.125895741035486,0,0.38230436003127,0.0458802122415155,0.167474373057587,0.0694390218198805,0.332174491029066,0,0,0,0,0,0,0.231927463162342,0,0,0,0,0,0,0,0,0,0,0.0195901376587099,0,0,0,0.10491705551603,0.190861340515746,0,0,0.167474373057587,0,0,0.0917604244830311 | |||
|repeat_enrich_byname=0,0,0,0.167474373057587,0.0694390218198805,0,0.167474373057587,0,0.0917604244830311,0,0,0,0,0.38230436003127,0,0,-0.0152514121232228,0.0458802122415155,-0.136361649944788,-0.143515142523472,0.0458802122415155,0,0.0518064000928694,0,0,0,0,0.0917604244830311,0,0,0.231927463162342,0,0.662576733994728,0,0.23762714205898,0.0458802122415155,0,0,0,0.143218662738836,-0.0735447677360656,0,-0.058294329568339,0.219695432570927,0,0,0,0,-0.186503482805531,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.0963878270612498,-0.04680465889238,0,0,0,0.216133613957603,0.487518062797679,0,0,0.227684257017824,0.223980008147159,0,0,-0.223570208494048,0,-0.163380741923639,0.252667244126028,0,0.0807024858921957,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.553106842044122,0,0,0.0917604244830311,0.0178456062585157,0.238716158676388,0,0.0879975274744225,0.690683422463645,0.225334675164618,0,0.197490128759927,0,-0.0704622638475716,0.106337065261974,0.232777761394472,0.219809308351133,-0.147401849371139,-0.0225073464922604,0,0.0886776307474755,0.020660860344321,0.0120641613208816,0.0233144355352095,-0.0558852071992884,0.128042220392795,0.10898681678318,0,0,0,-0.21030055004655,0,-0.0686569997987727,-0.322640341419187,0.0878149960463395,0.0619410735318375,-0.0114974051361135,0.161571286115261,0.111130284025371,-0.0395325284566706,-0.0751320928653248,0,-0.191715801263222,0,0,0,0.00115560556172106,-0.231068869916443,-0.12203470405414,0,-0.483977461810981,-0.0683442610773682,0.0458802122415155,-0.214429428898725,0.0115131700009095,0.0917604244830311,0.0312734541994659,0.120150986667985,0.167474373057587,0,0.157550409150461,0,0.0917604244830311,-0.247841836841011,0.15943607450923,0.104869007251676,0,-0.089584996247358,0,-0.0345914406395722,0,0.0361507653249646,0.0859175657049475,0,0.0450907642109846,0,0.12212359482412,-0.273930777045393,0.123048997309293,0.160031057587941,0.0333135976712059,-0.0744708313559429,-0.009452434210929,0.0127646442123346,-0.132938762370438,-0.101364614532639,1.52460606419819,0,0.0927854857122313,0.307490039078007,0.0187184934064171,0.189958263070122,0.0725684900401264,-0.0729862651526063,0,-0.0402246113576765,0,-0.247132261376474,-0.308506288310898,-0.347528950097655,-0.096892418377148,0,0.201375669143472,0.50900044270134,0,0.303001632573636,0,0.632833869290397,0.0815603798277023,0.0761330440897525,-0.211650427864589,0.0509106023864684,0,-0.0338004247375613,0,0,0.0741823579858893,-0.0680016647068018,0,0.0052273801864075,0.0236309550770005,0.0517850612244937,-0.115971073434934,0.0917604244830311,0,0.053227879546672,0,0,-0.438453690760443,0,-0.619783323958633,-0.021398878324414,0.0411983127544331,-0.108622809454255,0,0,0.282185281315779,0,0.0462254469320843,0,0,0.284164033757997,0.221096455817088,0,0,0,0,0.0824020175871049,0.0137858509421618,0,0,0,0,0,-0.0885646887371276,-0.0667936365681526,0,0.337724568807221,0,0,0,0,0,0.0380682578412422,0,0,0.771450260510003,0.0872991963630709,0.108910047485921,0.30418040254757,0,0,0,0.207007689349245,-0.111476137611693,0.231927463162342,0.0356116665599552,0,0,0,0,0.0813333832683755,0,0.167474373057587,0,0,-0.057730457053664,0.0462082543847324,0,0,0,0.496874609000545,0,0,0,0,-0.207589652955704,0,0,-0.172217126105425,0,0.194725475151754,-0.0815818795468414,0,-0.211555609909242,-0.19651109143248,0.959153367031671,0,0.0917604244830311,0.161383960112832,0,0,-0.129718428031088,0,0.167474373057587,0.0458802122415155,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.0797297179515681,-0.000463632175479317,0.273664898290112,0,0,0,0,0,0,0.0217741891626124,0.0513018127240194,0,0,0,0,0,0.231927463162342,0,0,-0.133701370856022,0,0,0,0,0,0.58100246537204,0,0,0,0.42273109190272,0.366065849904644,0,0,0.0603624366137065,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108608377126894,0.0381520793231229,0,0,0,0,0,0,0,0.107471061825179,0,0.167474373057587,0,0,-0.0221239492259461,0.0917604244830311,0,0,0.0626779882684304,0,0.177406538720834,0,0,0,0,0,0,0.0458802122415155,0,0,0,0,0,0,0.167474373057587,0,0,0,0.115963731581171,0,0,0,0.25804862808542,0,0.00083217767538557,0.0411807484996214,0,0,0.145511514193006,0,0,0,0,0.0917604244830311,0,0.084623307552644,0.12812370768536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082651919339233,0,0,0,0,0.167474373057587,0,0,0.484467966711621,0,0,0.160566661131878,0,0,0,0,0.167474373057587,0,-0.1583594418864,0.055777013484175,0.00442602783150858,0,0,0,-0.00850536024093945,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455037794746711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168862284403611,0,0,0,0,0,0,0.011868848966099,0.167474373057587,0,0,0,0,0,0,0.0917604244830311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257706100538582,0,0,0,0.341757007533835,0,0,0,0,0,0,0.231927463162342,0,0.38230436003127,0,0,0,0,0,0,0,0,0,0,0,0.0917604244830311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0917604244830311,0,0,0,0.088362602174145,0,0,0,0,0,0,0,0,0.49379146912454,0,0,0,0,0.334082284792216,0,-0.0843766322300271,0,0,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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=20.64898 | |rna_weight_ug=20.64898 | ||
|sample_age=48 | |sample_age=48 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0680 | |sample_cell_catalog=RCB0680 | ||
|sample_cell_line=HKBMM | |sample_cell_line=HKBMM | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.45951785440872e-234!GO:0005737;cytoplasm;2.72355781701285e-200!GO:0043226;organelle;8.01909582727903e-185!GO:0043229;intracellular organelle;2.26886179751407e-184!GO:0043231;intracellular membrane-bound organelle;2.80526004549588e-183!GO:0043227;membrane-bound organelle;6.07954830327702e-183!GO:0044444;cytoplasmic part;8.17368188070109e-142!GO:0044422;organelle part;1.37638826937979e-126!GO:0044446;intracellular organelle part;2.75542500727722e-125!GO:0032991;macromolecular complex;3.50968177401994e-88!GO:0030529;ribonucleoprotein complex;4.61696541436025e-87!GO:0044237;cellular metabolic process;2.83915504742592e-86!GO:0044238;primary metabolic process;2.83915504742592e-86!GO:0005515;protein binding;7.201708202141e-81!GO:0043170;macromolecule metabolic process;1.10329318077028e-79!GO:0043233;organelle lumen;9.98773427851322e-71!GO:0031974;membrane-enclosed lumen;9.98773427851322e-71!GO:0005739;mitochondrion;2.33435457879726e-70!GO:0003723;RNA binding;1.10506568245817e-68!GO:0005634;nucleus;1.8957509737422e-63!GO:0044428;nuclear part;5.54179055642579e-63!GO:0019538;protein metabolic process;4.35646243737859e-56!GO:0006412;translation;3.12246043540012e-55!GO:0005840;ribosome;5.27453005865269e-55!GO:0044260;cellular macromolecule metabolic process;8.05855173697981e-50!GO:0044267;cellular protein metabolic process;1.43093593947864e-49!GO:0031090;organelle membrane;2.32123209454134e-49!GO:0003735;structural constituent of ribosome;2.34631450319577e-47!GO:0016043;cellular component organization and biogenesis;4.38020716318923e-47!GO:0006396;RNA processing;3.95134072291672e-46!GO:0033036;macromolecule localization;1.92923420495714e-45!GO:0015031;protein transport;8.55145219290896e-45!GO:0044429;mitochondrial part;4.71108802544093e-44!GO:0009059;macromolecule biosynthetic process;5.980040113085e-44!GO:0045184;establishment of protein localization;4.28085889195967e-43!GO:0009058;biosynthetic process;1.73243578167983e-42!GO:0043283;biopolymer metabolic process;2.27491104539251e-42!GO:0008104;protein localization;2.36805750799912e-42!GO:0044249;cellular biosynthetic process;5.72306016090388e-42!GO:0005829;cytosol;2.34165991313215e-41!GO:0031981;nuclear lumen;2.48432476092761e-41!GO:0043234;protein complex;3.0591465768203e-41!GO:0033279;ribosomal subunit;6.73194011610842e-40!GO:0010467;gene expression;3.83040385896408e-39!GO:0031967;organelle envelope;3.80316766493408e-37!GO:0031975;envelope;9.04637861382123e-37!GO:0046907;intracellular transport;9.08337627242467e-35!GO:0016071;mRNA metabolic process;5.96417928099937e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.96417928099937e-34!GO:0008380;RNA splicing;3.58307021087925e-31!GO:0006886;intracellular protein transport;5.92568938879599e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.80367809083222e-30!GO:0065003;macromolecular complex assembly;4.65844104500804e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.93206132557956e-29!GO:0006397;mRNA processing;1.48327406844891e-28!GO:0005740;mitochondrial envelope;4.89080393546216e-28!GO:0022607;cellular component assembly;2.97607108784828e-27!GO:0043228;non-membrane-bound organelle;4.41381819514283e-27!GO:0043232;intracellular non-membrane-bound organelle;4.41381819514283e-27!GO:0006996;organelle organization and biogenesis;2.3271035773148e-26!GO:0031966;mitochondrial membrane;2.78309239085739e-26!GO:0019866;organelle inner membrane;2.50525300794017e-25!GO:0005743;mitochondrial inner membrane;1.09588074344218e-23!GO:0005654;nucleoplasm;1.77952559033881e-23!GO:0044445;cytosolic part;1.80202953955231e-23!GO:0051649;establishment of cellular localization;2.54545317642735e-23!GO:0051641;cellular localization;3.12483397437888e-23!GO:0005681;spliceosome;1.20622821612957e-22!GO:0000166;nucleotide binding;3.84245408519616e-22!GO:0012505;endomembrane system;4.22442458215392e-21!GO:0006457;protein folding;6.54585910938375e-21!GO:0006119;oxidative phosphorylation;7.56224383237157e-21!GO:0015934;large ribosomal subunit;9.02086625586051e-21!GO:0005730;nucleolus;1.14416506276527e-20!GO:0005783;endoplasmic reticulum;1.63090395919041e-20!GO:0015935;small ribosomal subunit;3.79691366084478e-20!GO:0016462;pyrophosphatase activity;4.72443576333486e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.05049058932994e-20!GO:0031980;mitochondrial lumen;7.71689662218948e-20!GO:0005759;mitochondrial matrix;7.71689662218948e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.46877303025294e-20!GO:0017111;nucleoside-triphosphatase activity;1.12457576174669e-19!GO:0044455;mitochondrial membrane part;2.1448101774257e-19!GO:0005794;Golgi apparatus;3.50520717399363e-19!GO:0044451;nucleoplasm part;5.13726036864908e-19!GO:0003676;nucleic acid binding;6.33151857230053e-19!GO:0016874;ligase activity;6.63518582945248e-19!GO:0008134;transcription factor binding;5.43153135954718e-18!GO:0048770;pigment granule;5.53157342738324e-18!GO:0042470;melanosome;5.53157342738324e-18!GO:0012501;programmed cell death;7.01317786236114e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.5516282798964e-17!GO:0006915;apoptosis;1.55980222954639e-17!GO:0043285;biopolymer catabolic process;1.87782710151761e-17!GO:0044265;cellular macromolecule catabolic process;1.96504989012132e-17!GO:0006259;DNA metabolic process;2.98272225667311e-17!GO:0032553;ribonucleotide binding;3.56051698086451e-17!GO:0032555;purine ribonucleotide binding;3.56051698086451e-17!GO:0017076;purine nucleotide binding;7.46386601950597e-17!GO:0006512;ubiquitin cycle;9.20573726993269e-17!GO:0022618;protein-RNA complex assembly;1.56938229506783e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.63092477753122e-16!GO:0008219;cell death;2.11346204894778e-16!GO:0016265;death;2.11346204894778e-16!GO:0019941;modification-dependent protein catabolic process;2.40547369058206e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.40547369058206e-16!GO:0016070;RNA metabolic process;4.31808399806304e-16!GO:0044257;cellular protein catabolic process;5.38390622539404e-16!GO:0009057;macromolecule catabolic process;5.81283559047245e-16!GO:0006511;ubiquitin-dependent protein catabolic process;6.16041003061657e-16!GO:0006605;protein targeting;1.02521110166399e-15!GO:0005746;mitochondrial respiratory chain;1.10032049274348e-15!GO:0044432;endoplasmic reticulum part;1.23907045365615e-15!GO:0051186;cofactor metabolic process;1.2703404581009e-15!GO:0007049;cell cycle;2.59845950480155e-15!GO:0043412;biopolymer modification;2.61429588353686e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.43844755316482e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.74564112352258e-15!GO:0051082;unfolded protein binding;7.11575139282996e-15!GO:0005761;mitochondrial ribosome;1.36040788282901e-14!GO:0000313;organellar ribosome;1.36040788282901e-14!GO:0030163;protein catabolic process;1.67306226672701e-14!GO:0042254;ribosome biogenesis and assembly;2.42875746553078e-14!GO:0008135;translation factor activity, nucleic acid binding;2.43547690953249e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.59494233366017e-14!GO:0044248;cellular catabolic process;2.79549686796423e-14!GO:0048193;Golgi vesicle transport;3.36067172402327e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.5049092689749e-14!GO:0003954;NADH dehydrogenase activity;3.5049092689749e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.5049092689749e-14!GO:0016192;vesicle-mediated transport;5.46061820798397e-14!GO:0006464;protein modification process;1.33443961380911e-13!GO:0005524;ATP binding;2.57423764958609e-13!GO:0032559;adenyl ribonucleotide binding;5.19541623054632e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.21839001828093e-13!GO:0030554;adenyl nucleotide binding;1.34471755545039e-12!GO:0006732;coenzyme metabolic process;1.47241693984152e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.15333490918746e-12!GO:0042773;ATP synthesis coupled electron transport;2.15333490918746e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.25745581649794e-12!GO:0045271;respiratory chain complex I;2.25745581649794e-12!GO:0005747;mitochondrial respiratory chain complex I;2.25745581649794e-12!GO:0009055;electron carrier activity;2.48928602395459e-12!GO:0048523;negative regulation of cellular process;3.87644206386842e-12!GO:0043067;regulation of programmed cell death;4.19791620296966e-12!GO:0042981;regulation of apoptosis;5.15648399647429e-12!GO:0005793;ER-Golgi intermediate compartment;6.69399292179455e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.12650547822235e-12!GO:0022402;cell cycle process;8.70664902570091e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;8.70664902570091e-12!GO:0000375;RNA splicing, via transesterification reactions;8.70664902570091e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.70664902570091e-12!GO:0006366;transcription from RNA polymerase II promoter;9.55689704317035e-12!GO:0006913;nucleocytoplasmic transport;2.04428896133772e-11!GO:0006399;tRNA metabolic process;2.33481031414004e-11!GO:0043687;post-translational protein modification;2.85918623972455e-11!GO:0003743;translation initiation factor activity;3.705634048809e-11!GO:0003712;transcription cofactor activity;3.72560612674847e-11!GO:0051169;nuclear transport;4.2631349920606e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.67178473829427e-11!GO:0051726;regulation of cell cycle;7.76781938732134e-11!GO:0005789;endoplasmic reticulum membrane;8.67571924557679e-11!GO:0000074;regulation of progression through cell cycle;1.06979715247811e-10!GO:0008639;small protein conjugating enzyme activity;1.18314155824124e-10!GO:0048519;negative regulation of biological process;1.75291524879887e-10!GO:0006974;response to DNA damage stimulus;2.0293675817886e-10!GO:0006413;translational initiation;2.27319892930264e-10!GO:0006461;protein complex assembly;2.81014579195815e-10!GO:0050794;regulation of cellular process;3.1844418296997e-10!GO:0004842;ubiquitin-protein ligase activity;3.37239976210833e-10!GO:0009259;ribonucleotide metabolic process;3.70156291540679e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.016830413993e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.40073189480753e-10!GO:0016604;nuclear body;5.40073189480753e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.65879505490309e-10!GO:0017038;protein import;5.78769638791429e-10!GO:0005635;nuclear envelope;7.55312230259753e-10!GO:0019787;small conjugating protein ligase activity;9.03514568027751e-10!GO:0006163;purine nucleotide metabolic process;9.7628559172173e-10!GO:0007005;mitochondrion organization and biogenesis;1.01952559668505e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.18369295277748e-09!GO:0003924;GTPase activity;1.22072249011706e-09!GO:0009150;purine ribonucleotide metabolic process;1.66460139923808e-09!GO:0006446;regulation of translational initiation;1.91745182383203e-09!GO:0006364;rRNA processing;1.9392173275002e-09!GO:0051246;regulation of protein metabolic process;2.05961461891836e-09!GO:0016072;rRNA metabolic process;2.62197182116369e-09!GO:0031965;nuclear membrane;3.17217670361848e-09!GO:0016887;ATPase activity;3.48563781171488e-09!GO:0042623;ATPase activity, coupled;3.73877441329807e-09!GO:0006164;purine nucleotide biosynthetic process;4.09675358231866e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.54070772809303e-09!GO:0008565;protein transporter activity;4.54070772809303e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.54070772809303e-09!GO:0009260;ribonucleotide biosynthetic process;5.40561917828093e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.67783807457632e-09!GO:0043069;negative regulation of programmed cell death;6.7178593700813e-09!GO:0044453;nuclear membrane part;8.90962304219873e-09!GO:0016881;acid-amino acid ligase activity;1.17058456696766e-08!GO:0009141;nucleoside triphosphate metabolic process;1.17105910318823e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.28399799095844e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.28399799095844e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.28399799095844e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.28399799095844e-08!GO:0044431;Golgi apparatus part;1.37454554646748e-08!GO:0005768;endosome;1.48035303008035e-08!GO:0009056;catabolic process;1.50512228665436e-08!GO:0051188;cofactor biosynthetic process;1.51226310739661e-08!GO:0043038;amino acid activation;1.55601846236863e-08!GO:0006418;tRNA aminoacylation for protein translation;1.55601846236863e-08!GO:0043039;tRNA aminoacylation;1.55601846236863e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.55674649316438e-08!GO:0006916;anti-apoptosis;1.55949249007403e-08!GO:0043066;negative regulation of apoptosis;1.62515038110402e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.22861367290447e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.22861367290447e-08!GO:0000278;mitotic cell cycle;2.22861367290447e-08!GO:0048522;positive regulation of cellular process;2.40793147623833e-08!GO:0004386;helicase activity;2.88746705435093e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.29037446762609e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.81713269344719e-08!GO:0016740;transferase activity;4.56698722991923e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.4876843297939e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.65038788463213e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.65038788463213e-08!GO:0006281;DNA repair;6.56124188909869e-08!GO:0009117;nucleotide metabolic process;6.86372497411058e-08!GO:0015986;ATP synthesis coupled proton transport;7.97216042806091e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.97216042806091e-08!GO:0007243;protein kinase cascade;8.10255643536119e-08!GO:0005643;nuclear pore;8.80226689489723e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.01637382872855e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.01637382872855e-07!GO:0030120;vesicle coat;1.06381901545108e-07!GO:0030662;coated vesicle membrane;1.06381901545108e-07!GO:0009719;response to endogenous stimulus;1.38011714627282e-07!GO:0065002;intracellular protein transport across a membrane;1.46735920137594e-07!GO:0016607;nuclear speck;1.89020375310328e-07!GO:0046034;ATP metabolic process;1.91571877290129e-07!GO:0008026;ATP-dependent helicase activity;2.06146415628585e-07!GO:0009108;coenzyme biosynthetic process;2.41443201073579e-07!GO:0051170;nuclear import;3.28350768591378e-07!GO:0045786;negative regulation of progression through cell cycle;3.34690734729916e-07!GO:0004298;threonine endopeptidase activity;3.54119485808087e-07!GO:0005788;endoplasmic reticulum lumen;4.23813693654793e-07!GO:0051276;chromosome organization and biogenesis;4.69818399872143e-07!GO:0009060;aerobic respiration;4.88544762965346e-07!GO:0019829;cation-transporting ATPase activity;4.88544762965346e-07!GO:0006606;protein import into nucleus;6.26925366768411e-07!GO:0005525;GTP binding;6.26925366768411e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;6.73036780142012e-07!GO:0000139;Golgi membrane;7.80621776305787e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.80844280368209e-07!GO:0006754;ATP biosynthetic process;7.80844280368209e-07!GO:0006753;nucleoside phosphate metabolic process;7.80844280368209e-07!GO:0050789;regulation of biological process;9.33906911488315e-07!GO:0048475;coated membrane;9.66232570798681e-07!GO:0030117;membrane coat;9.66232570798681e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.16469377097851e-06!GO:0016563;transcription activator activity;1.26319348305094e-06!GO:0031988;membrane-bound vesicle;1.4440910196466e-06!GO:0043566;structure-specific DNA binding;1.53781716396872e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.55586778244511e-06!GO:0016779;nucleotidyltransferase activity;1.57276617955092e-06!GO:0046930;pore complex;1.68117900458533e-06!GO:0003713;transcription coactivator activity;1.70478215981721e-06!GO:0006403;RNA localization;1.74702789524049e-06!GO:0045333;cellular respiration;1.79339568506144e-06!GO:0006323;DNA packaging;2.10790411533661e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.1452158970668e-06!GO:0016787;hydrolase activity;2.21620320657211e-06!GO:0006793;phosphorus metabolic process;2.62546576277113e-06!GO:0006796;phosphate metabolic process;2.62546576277113e-06!GO:0050657;nucleic acid transport;2.86505257125564e-06!GO:0051236;establishment of RNA localization;2.86505257125564e-06!GO:0050658;RNA transport;2.86505257125564e-06!GO:0032446;protein modification by small protein conjugation;3.09616898119799e-06!GO:0006260;DNA replication;3.26009634377697e-06!GO:0045454;cell redox homeostasis;3.35807522170895e-06!GO:0031324;negative regulation of cellular metabolic process;3.4703261115467e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.93175387668693e-06!GO:0043623;cellular protein complex assembly;3.95979587194402e-06!GO:0032561;guanyl ribonucleotide binding;4.16662624741226e-06!GO:0019001;guanyl nucleotide binding;4.16662624741226e-06!GO:0016567;protein ubiquitination;4.23526102996555e-06!GO:0065004;protein-DNA complex assembly;5.15940362427925e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.96802875156639e-06!GO:0045259;proton-transporting ATP synthase complex;6.18466296172734e-06!GO:0005694;chromosome;6.28650506149372e-06!GO:0000245;spliceosome assembly;6.46023708016494e-06!GO:0016564;transcription repressor activity;7.44591598539938e-06!GO:0051789;response to protein stimulus;7.71232945636759e-06!GO:0006986;response to unfolded protein;7.71232945636759e-06!GO:0005667;transcription factor complex;8.07709406195846e-06!GO:0005770;late endosome;9.11028909392534e-06!GO:0019899;enzyme binding;1.10561016779646e-05!GO:0006752;group transfer coenzyme metabolic process;1.17064762840465e-05!GO:0031982;vesicle;1.20875448147089e-05!GO:0003697;single-stranded DNA binding;1.36069326615721e-05!GO:0006333;chromatin assembly or disassembly;1.43604672448399e-05!GO:0031410;cytoplasmic vesicle;1.50048172391496e-05!GO:0048518;positive regulation of biological process;1.52478213199917e-05!GO:0016310;phosphorylation;1.61870922541098e-05!GO:0009967;positive regulation of signal transduction;1.83644458060931e-05!GO:0005762;mitochondrial large ribosomal subunit;2.03736245917956e-05!GO:0000315;organellar large ribosomal subunit;2.03736245917956e-05!GO:0000785;chromatin;2.0628276946333e-05!GO:0005773;vacuole;2.09025742633526e-05!GO:0006099;tricarboxylic acid cycle;2.37384285816186e-05!GO:0046356;acetyl-CoA catabolic process;2.37384285816186e-05!GO:0009892;negative regulation of metabolic process;2.63642623680881e-05!GO:0051427;hormone receptor binding;2.67889105668453e-05!GO:0006613;cotranslational protein targeting to membrane;3.12223192632927e-05!GO:0003714;transcription corepressor activity;3.48162536044396e-05!GO:0016491;oxidoreductase activity;3.74924588598735e-05!GO:0006084;acetyl-CoA metabolic process;3.84849839806357e-05!GO:0016853;isomerase activity;3.92394323835388e-05!GO:0000087;M phase of mitotic cell cycle;4.07166109729118e-05!GO:0005798;Golgi-associated vesicle;4.34740142679133e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.86180938068312e-05!GO:0007067;mitosis;5.06875509196281e-05!GO:0044427;chromosomal part;5.10088585913525e-05!GO:0044440;endosomal part;5.25387171679795e-05!GO:0010008;endosome membrane;5.25387171679795e-05!GO:0035257;nuclear hormone receptor binding;5.5984191611031e-05!GO:0051187;cofactor catabolic process;6.38670882519625e-05!GO:0051028;mRNA transport;6.76631880030331e-05!GO:0003724;RNA helicase activity;7.24954943841283e-05!GO:0005769;early endosome;7.57469831154448e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.99495355976562e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.88344173514811e-05!GO:0000314;organellar small ribosomal subunit;0.000105613823919806!GO:0005763;mitochondrial small ribosomal subunit;0.000105613823919806!GO:0048468;cell development;0.000111261121302102!GO:0008361;regulation of cell size;0.000114631510800681!GO:0031252;leading edge;0.000116038745635451!GO:0030867;rough endoplasmic reticulum membrane;0.000116277533685366!GO:0009109;coenzyme catabolic process;0.000128321160564695!GO:0000323;lytic vacuole;0.000133257806957405!GO:0005764;lysosome;0.000133257806957405!GO:0043065;positive regulation of apoptosis;0.000141637128186865!GO:0009615;response to virus;0.000142496927864594!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000152307396079963!GO:0051301;cell division;0.000163129482530524!GO:0022403;cell cycle phase;0.000166351606925998!GO:0016049;cell growth;0.000166522668468841!GO:0016859;cis-trans isomerase activity;0.000169959167671458!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000172835741245028!GO:0016568;chromatin modification;0.000172835741245028!GO:0000151;ubiquitin ligase complex;0.000183390465459452!GO:0043068;positive regulation of programmed cell death;0.000183390465459452!GO:0033116;ER-Golgi intermediate compartment membrane;0.000196377486066307!GO:0043021;ribonucleoprotein binding;0.000204022558246075!GO:0006839;mitochondrial transport;0.000210015383512456!GO:0006091;generation of precursor metabolites and energy;0.000279834569439022!GO:0008033;tRNA processing;0.000279834569439022!GO:0005048;signal sequence binding;0.000314160504457724!GO:0016481;negative regulation of transcription;0.000336703183811549!GO:0006612;protein targeting to membrane;0.00034459378478887!GO:0008637;apoptotic mitochondrial changes;0.000365064511083498!GO:0005813;centrosome;0.000377603887124418!GO:0065009;regulation of a molecular function;0.000391366802312487!GO:0006891;intra-Golgi vesicle-mediated transport;0.0004187131286998!GO:0030036;actin cytoskeleton organization and biogenesis;0.00042347059848795!GO:0065007;biological regulation;0.00043242070460331!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000437764533831421!GO:0015399;primary active transmembrane transporter activity;0.000437764533831421!GO:0043681;protein import into mitochondrion;0.000439869402406997!GO:0019222;regulation of metabolic process;0.000465576764561824!GO:0008632;apoptotic program;0.000503345404037641!GO:0003899;DNA-directed RNA polymerase activity;0.000508807232737068!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000527576487393196!GO:0015630;microtubule cytoskeleton;0.000532188352201816!GO:0008654;phospholipid biosynthetic process;0.000556574812254808!GO:0031072;heat shock protein binding;0.000564052438505498!GO:0008250;oligosaccharyl transferase complex;0.000628343290138856!GO:0006626;protein targeting to mitochondrion;0.000631299379972599!GO:0006334;nucleosome assembly;0.000668325489105258!GO:0009165;nucleotide biosynthetic process;0.000669761931064411!GO:0005885;Arp2/3 protein complex;0.000691779544085844!GO:0016044;membrane organization and biogenesis;0.000715045091383808!GO:0001558;regulation of cell growth;0.000801592781922445!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000813884474398471!GO:0051920;peroxiredoxin activity;0.000827035096965611!GO:0005741;mitochondrial outer membrane;0.000833337937701465!GO:0006414;translational elongation;0.00084027539912374!GO:0048471;perinuclear region of cytoplasm;0.000867829514872461!GO:0031497;chromatin assembly;0.000877677738578769!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000883640194783749!GO:0004576;oligosaccharyl transferase activity;0.00088904609309983!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000906777037579997!GO:0015980;energy derivation by oxidation of organic compounds;0.000925924864084974!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00105377633430154!GO:0019867;outer membrane;0.00110568250182118!GO:0044452;nucleolar part;0.00113221832691156!GO:0005815;microtubule organizing center;0.00113221832691156!GO:0007006;mitochondrial membrane organization and biogenesis;0.00116315478193558!GO:0000049;tRNA binding;0.00116315478193558!GO:0045893;positive regulation of transcription, DNA-dependent;0.00118142189284279!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00123822279917534!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125800236430941!GO:0007264;small GTPase mediated signal transduction;0.00126699795126179!GO:0031968;organelle outer membrane;0.00130809614062498!GO:0030663;COPI coated vesicle membrane;0.00134813046145306!GO:0030126;COPI vesicle coat;0.00134813046145306!GO:0018196;peptidyl-asparagine modification;0.00134813046145306!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00134813046145306!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00138070889253906!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00138070889253906!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00138070889253906!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00138671197698095!GO:0006401;RNA catabolic process;0.00138692520160431!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00143880202079032!GO:0019843;rRNA binding;0.00146794326147401!GO:0006417;regulation of translation;0.00147686624599381!GO:0008186;RNA-dependent ATPase activity;0.00153181212082821!GO:0045941;positive regulation of transcription;0.00154423269519647!GO:0003729;mRNA binding;0.00160356500766098!GO:0030132;clathrin coat of coated pit;0.00168759441499267!GO:0005905;coated pit;0.00178719809221479!GO:0051168;nuclear export;0.00179354489314898!GO:0003690;double-stranded DNA binding;0.00185982539615239!GO:0006402;mRNA catabolic process;0.00186846019074305!GO:0030137;COPI-coated vesicle;0.00205914412738886!GO:0045045;secretory pathway;0.00230230874492653!GO:0030659;cytoplasmic vesicle membrane;0.00231436825914372!GO:0042802;identical protein binding;0.00261073520559814!GO:0007050;cell cycle arrest;0.0026116361535854!GO:0030029;actin filament-based process;0.00270091000835569!GO:0030880;RNA polymerase complex;0.00288718222727978!GO:0008092;cytoskeletal protein binding;0.00288718222727978!GO:0043492;ATPase activity, coupled to movement of substances;0.00298443103619838!GO:0051540;metal cluster binding;0.00303682278084964!GO:0051536;iron-sulfur cluster binding;0.00303682278084964!GO:0030133;transport vesicle;0.00304657478378448!GO:0030134;ER to Golgi transport vesicle;0.00329133608983277!GO:0006917;induction of apoptosis;0.00332033718393091!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00336216686245181!GO:0051329;interphase of mitotic cell cycle;0.00336323911549575!GO:0000059;protein import into nucleus, docking;0.00340048966743894!GO:0016197;endosome transport;0.00344558469356129!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00353003367334349!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00353003367334349!GO:0051101;regulation of DNA binding;0.00356865293511198!GO:0016363;nuclear matrix;0.00370894791352384!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00376215605863826!GO:0001836;release of cytochrome c from mitochondria;0.00381717205610542!GO:0048500;signal recognition particle;0.00381717205610542!GO:0048487;beta-tubulin binding;0.00391758943982087!GO:0030658;transport vesicle membrane;0.00391839617888813!GO:0004004;ATP-dependent RNA helicase activity;0.00397749162241146!GO:0043284;biopolymer biosynthetic process;0.003979579667605!GO:0051087;chaperone binding;0.00427891413206302!GO:0006520;amino acid metabolic process;0.00431253733080146!GO:0030127;COPII vesicle coat;0.00448985864551908!GO:0012507;ER to Golgi transport vesicle membrane;0.00448985864551908!GO:0012502;induction of programmed cell death;0.0044999794624851!GO:0031326;regulation of cellular biosynthetic process;0.00462302795439865!GO:0032940;secretion by cell;0.00463805139764281!GO:0045792;negative regulation of cell size;0.00473630713852668!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00480696286641427!GO:0009889;regulation of biosynthetic process;0.00484515963325484!GO:0006818;hydrogen transport;0.00490207817586968!GO:0030308;negative regulation of cell growth;0.00492137452673005!GO:0005684;U2-dependent spliceosome;0.0051038371188572!GO:0046474;glycerophospholipid biosynthetic process;0.00544330629218526!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00545775534829686!GO:0000428;DNA-directed RNA polymerase complex;0.00545775534829686!GO:0015992;proton transport;0.00549633015424575!GO:0000279;M phase;0.00556836031502299!GO:0008139;nuclear localization sequence binding;0.00569872170270546!GO:0008287;protein serine/threonine phosphatase complex;0.00586522399584114!GO:0006261;DNA-dependent DNA replication;0.00589673267120372!GO:0016272;prefoldin complex;0.00591031896898965!GO:0046483;heterocycle metabolic process;0.00614400131749315!GO:0044433;cytoplasmic vesicle part;0.00623477214387166!GO:0033673;negative regulation of kinase activity;0.0063628718192556!GO:0006469;negative regulation of protein kinase activity;0.0063628718192556!GO:0004177;aminopeptidase activity;0.0063717654895602!GO:0051287;NAD binding;0.00638890629046368!GO:0051325;interphase;0.00644097862944142!GO:0045892;negative regulation of transcription, DNA-dependent;0.00644281228279297!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0065599339331814!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0065599339331814!GO:0006383;transcription from RNA polymerase III promoter;0.00673280564321965!GO:0044262;cellular carbohydrate metabolic process;0.00750721971551515!GO:0008312;7S RNA binding;0.00800375131508429!GO:0009116;nucleoside metabolic process;0.00804563192642405!GO:0030176;integral to endoplasmic reticulum membrane;0.00824062906803144!GO:0017166;vinculin binding;0.00840997158915451!GO:0051252;regulation of RNA metabolic process;0.00841819830616661!GO:0040008;regulation of growth;0.00853605879163477!GO:0035258;steroid hormone receptor binding;0.00863453841393411!GO:0006595;polyamine metabolic process;0.00864861585803919!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00866446455719785!GO:0043488;regulation of mRNA stability;0.00874718735129425!GO:0043487;regulation of RNA stability;0.00874718735129425!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00926178059025357!GO:0009112;nucleobase metabolic process;0.00933230882941537!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00934250860067649!GO:0045047;protein targeting to ER;0.00934250860067649!GO:0009966;regulation of signal transduction;0.00938822156028079!GO:0005791;rough endoplasmic reticulum;0.00950456764584234!GO:0006650;glycerophospholipid metabolic process;0.00951398893672081!GO:0006740;NADPH regeneration;0.0096900622146219!GO:0006098;pentose-phosphate shunt;0.0096900622146219!GO:0030521;androgen receptor signaling pathway;0.00991535879377384!GO:0003746;translation elongation factor activity;0.0100609772812585!GO:0008243;plasminogen activator activity;0.0100820484633523!GO:0031625;ubiquitin protein ligase binding;0.0102942095913725!GO:0007242;intracellular signaling cascade;0.0103300060066924!GO:0006082;organic acid metabolic process;0.0104027012079977!GO:0030660;Golgi-associated vesicle membrane;0.0104027012079977!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0104627035650685!GO:0008601;protein phosphatase type 2A regulator activity;0.0107056255861221!GO:0019752;carboxylic acid metabolic process;0.0107224164480262!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0108831030182169!GO:0006950;response to stress;0.0113987760160896!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.011464634590717!GO:0051348;negative regulation of transferase activity;0.0116102302363671!GO:0043433;negative regulation of transcription factor activity;0.0117722682334512!GO:0046489;phosphoinositide biosynthetic process;0.011974881817072!GO:0006352;transcription initiation;0.0120607417752014!GO:0046467;membrane lipid biosynthetic process;0.0121572126191363!GO:0006984;ER-nuclear signaling pathway;0.0121816460557219!GO:0004518;nuclease activity;0.0121822152423528!GO:0004674;protein serine/threonine kinase activity;0.0122461879883613!GO:0004532;exoribonuclease activity;0.0125403594819205!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0125403594819205!GO:0046822;regulation of nucleocytoplasmic transport;0.0125403594819205!GO:0005869;dynactin complex;0.0125403594819205!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0125403594819205!GO:0015002;heme-copper terminal oxidase activity;0.0125403594819205!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0125403594819205!GO:0004129;cytochrome-c oxidase activity;0.0125403594819205!GO:0030118;clathrin coat;0.0126457811653517!GO:0004860;protein kinase inhibitor activity;0.0126848455038427!GO:0043022;ribosome binding;0.0130131965605081!GO:0001726;ruffle;0.0130487239059549!GO:0006509;membrane protein ectodomain proteolysis;0.0138720828725439!GO:0033619;membrane protein proteolysis;0.0138720828725439!GO:0050662;coenzyme binding;0.0140325919796216!GO:0012506;vesicle membrane;0.0140428904560978!GO:0051090;regulation of transcription factor activity;0.0141053913288617!GO:0008180;signalosome;0.0141777245634237!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0142997233215351!GO:0045926;negative regulation of growth;0.0144125060494587!GO:0007010;cytoskeleton organization and biogenesis;0.0146887177913162!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0147488935165498!GO:0010257;NADH dehydrogenase complex assembly;0.0147488935165498!GO:0033108;mitochondrial respiratory chain complex assembly;0.0147488935165498!GO:0006289;nucleotide-excision repair;0.0147536056970795!GO:0005832;chaperonin-containing T-complex;0.0153804771195107!GO:0051539;4 iron, 4 sulfur cluster binding;0.0156397227578165!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0156397227578165!GO:0008047;enzyme activator activity;0.0160321465089152!GO:0005819;spindle;0.0161824501840626!GO:0005637;nuclear inner membrane;0.0164322931446101!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0164777365424994!GO:0051098;regulation of binding;0.0170543874552481!GO:0030031;cell projection biogenesis;0.0171075785776179!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0171075785776179!GO:0006144;purine base metabolic process;0.0174761748113524!GO:0022415;viral reproductive process;0.0175744400961627!GO:0046519;sphingoid metabolic process;0.0178197244932523!GO:0008408;3'-5' exonuclease activity;0.0181218111713048!GO:0006807;nitrogen compound metabolic process;0.0182560890358457!GO:0008283;cell proliferation;0.0184366790996866!GO:0031902;late endosome membrane;0.0187001992421602!GO:0000786;nucleosome;0.0194062153710407!GO:0006302;double-strand break repair;0.0194104223369666!GO:0003678;DNA helicase activity;0.0198481635534157!GO:0046983;protein dimerization activity;0.0206372765515277!GO:0031323;regulation of cellular metabolic process;0.0206917476172385!GO:0004527;exonuclease activity;0.0208629916033658!GO:0030032;lamellipodium biogenesis;0.021280419575254!GO:0051059;NF-kappaB binding;0.0215425858432478!GO:0031901;early endosome membrane;0.0226177615842182!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0229200008907938!GO:0008022;protein C-terminus binding;0.0229206057747468!GO:0003711;transcription elongation regulator activity;0.0230685617859817!GO:0030125;clathrin vesicle coat;0.0230685617859817!GO:0030665;clathrin coated vesicle membrane;0.0230685617859817!GO:0016301;kinase activity;0.0234743037072766!GO:0000159;protein phosphatase type 2A complex;0.0235405623869772!GO:0006749;glutathione metabolic process;0.0235915439006118!GO:0031529;ruffle organization and biogenesis;0.0237114318302001!GO:0030100;regulation of endocytosis;0.023721236060609!GO:0022890;inorganic cation transmembrane transporter activity;0.0238643698559381!GO:0030119;AP-type membrane coat adaptor complex;0.0238845752961304!GO:0006611;protein export from nucleus;0.0239863933779832!GO:0006672;ceramide metabolic process;0.0244960487743034!GO:0003684;damaged DNA binding;0.0247248720772728!GO:0006376;mRNA splice site selection;0.02493409236966!GO:0000389;nuclear mRNA 3'-splice site recognition;0.02493409236966!GO:0000082;G1/S transition of mitotic cell cycle;0.0256089430431167!GO:0007265;Ras protein signal transduction;0.0257165549415233!GO:0050790;regulation of catalytic activity;0.0259206144795676!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0259206144795676!GO:0006497;protein amino acid lipidation;0.0261581961111162!GO:0004722;protein serine/threonine phosphatase activity;0.0261581961111162!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0263992331737293!GO:0007162;negative regulation of cell adhesion;0.0265872346435862!GO:0009166;nucleotide catabolic process;0.0267002676386249!GO:0030027;lamellipodium;0.0268244776096723!GO:0022406;membrane docking;0.0276350251767965!GO:0048278;vesicle docking;0.0276350251767965!GO:0000096;sulfur amino acid metabolic process;0.0286314816592632!GO:0035035;histone acetyltransferase binding;0.0289953301959679!GO:0003756;protein disulfide isomerase activity;0.0289953301959679!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0289953301959679!GO:0005862;muscle thin filament tropomyosin;0.0291138548588843!GO:0000287;magnesium ion binding;0.0291407667070999!GO:0045334;clathrin-coated endocytic vesicle;0.029160886198775!GO:0032200;telomere organization and biogenesis;0.0295149580095781!GO:0000723;telomere maintenance;0.0295149580095781!GO:0051092;activation of NF-kappaB transcription factor;0.0295415365047079!GO:0006892;post-Golgi vesicle-mediated transport;0.0298176613499236!GO:0032507;maintenance of cellular protein localization;0.0302376453451259!GO:0006897;endocytosis;0.0302376453451259!GO:0010324;membrane invagination;0.0302376453451259!GO:0009119;ribonucleoside metabolic process;0.0304856835630327!GO:0009451;RNA modification;0.0308855614609748!GO:0032906;transforming growth factor-beta2 production;0.0308855614609748!GO:0032909;regulation of transforming growth factor-beta2 production;0.0308855614609748!GO:0008538;proteasome activator activity;0.0313403401625196!GO:0016251;general RNA polymerase II transcription factor activity;0.0313403401625196!GO:0009308;amine metabolic process;0.0325590154853532!GO:0015631;tubulin binding;0.0330393464995557!GO:0046966;thyroid hormone receptor binding;0.0330558226164454!GO:0030503;regulation of cell redox homeostasis;0.0332665154012762!GO:0007040;lysosome organization and biogenesis;0.0335032998136032!GO:0006739;NADP metabolic process;0.0336279212019834!GO:0046979;TAP2 binding;0.0336282563823956!GO:0046977;TAP binding;0.0336282563823956!GO:0046978;TAP1 binding;0.0336282563823956!GO:0007021;tubulin folding;0.0341071782464568!GO:0008652;amino acid biosynthetic process;0.0349412101843678!GO:0000209;protein polyubiquitination;0.0352055842296823!GO:0006904;vesicle docking during exocytosis;0.0352898144172818!GO:0008629;induction of apoptosis by intracellular signals;0.0353210799941867!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0354850010498257!GO:0051128;regulation of cellular component organization and biogenesis;0.0357804206062237!GO:0007033;vacuole organization and biogenesis;0.0357804206062237!GO:0006519;amino acid and derivative metabolic process;0.0361734382976104!GO:0009893;positive regulation of metabolic process;0.0369266454673935!GO:0003702;RNA polymerase II transcription factor activity;0.037049451631872!GO:0000178;exosome (RNase complex);0.0383496601718535!GO:0006284;base-excision repair;0.0384352738699701!GO:0000175;3'-5'-exoribonuclease activity;0.0385033442968314!GO:0045936;negative regulation of phosphate metabolic process;0.0385606715920908!GO:0000339;RNA cap binding;0.0385606715920908!GO:0031543;peptidyl-proline dioxygenase activity;0.0388851251045693!GO:0006979;response to oxidative stress;0.0403004867142382!GO:0030433;ER-associated protein catabolic process;0.0404513575167203!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0404513575167203!GO:0030518;steroid hormone receptor signaling pathway;0.040513852204874!GO:0007088;regulation of mitosis;0.0406987958718238!GO:0050681;androgen receptor binding;0.0411823755534725!GO:0030131;clathrin adaptor complex;0.0417191436727602!GO:0045185;maintenance of protein localization;0.0418559515358257!GO:0007030;Golgi organization and biogenesis;0.042046024383266!GO:0003725;double-stranded RNA binding;0.0422423814254533!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0430837615973424!GO:0047485;protein N-terminus binding;0.0437908802388074!GO:0005669;transcription factor TFIID complex;0.0448616427532519!GO:0009303;rRNA transcription;0.0453160964522814!GO:0032508;DNA duplex unwinding;0.0454372003618393!GO:0032392;DNA geometric change;0.0454372003618393!GO:0030911;TPR domain binding;0.0454603274271597!GO:0051235;maintenance of localization;0.0456223534339102!GO:0006458;'de novo' protein folding;0.0456223534339102!GO:0051084;'de novo' posttranslational protein folding;0.0456223534339102!GO:0000075;cell cycle checkpoint;0.0463309749360065!GO:0050811;GABA receptor binding;0.0465649924764847!GO:0006405;RNA export from nucleus;0.0474883036396057!GO:0006220;pyrimidine nucleotide metabolic process;0.0476470712433293!GO:0019798;procollagen-proline dioxygenase activity;0.0480295944984181!GO:0008286;insulin receptor signaling pathway;0.0480295944984181!GO:0051338;regulation of transferase activity;0.0483725287521808!GO:0030145;manganese ion binding;0.0483725287521808!GO:0006541;glutamine metabolic process;0.0487970963928134!GO:0046426;negative regulation of JAK-STAT cascade;0.0487970963928134!GO:0000781;chromosome, telomeric region;0.0489814018882555!GO:0004680;casein kinase activity;0.0492783660711295!GO:0019210;kinase inhibitor activity;0.0493362134906927!GO:0005784;translocon complex;0.0493484898512115!GO:0030128;clathrin coat of endocytic vesicle;0.0495311785063264!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0495311785063264!GO:0030122;AP-2 adaptor complex;0.0495311785063264!GO:0005774;vacuolar membrane;0.0495311785063264!GO:0018193;peptidyl-amino acid modification;0.0495311785063264!GO:0030041;actin filament polymerization;0.0495311785063264 | |||
|sample_id=10691 | |sample_id=10691 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=ONECUT1,2:2.09983241522;EN1,2:1.75871909186;UFEwm:1.15620811758;ALX4:1.12355292968;GLI1..3:1.05787877372;CDX1,2,4:1.05347938515;IRF7:0.993349708553;IRF1,2:0.985084257745;bHLH_family:0.973826580691;ZIC1..3:0.838488528227;EVI1:0.83821936994;AIRE:0.820574367614;RXR{A,B,G}:0.772942316892;NR6A1:0.740202685758;FOXQ1:0.738544702734;HES1:0.716205148258;TEF:0.67667923712;TBX4,5:0.662651293332;IKZF1:0.634246430602;PPARG:0.612606718457;NFE2L1:0.5810658077;RXRA_VDR{dimer}:0.558633145501;TP53:0.557664803501;ZNF148:0.550687061762;POU2F1..3:0.502702980979;T:0.499260655969;GZF1:0.478483514698;XCPE1{core}:0.464680986302;BACH2:0.459182910045;HOX{A6,A7,B6,B7}:0.435902897543;ATF6:0.431462110943;ZBTB6:0.42005656806;ZEB1:0.418956243135;FOXD3:0.41495864774;FOXO1,3,4:0.39115615327;ARID5B:0.363095915177;GTF2A1,2:0.31394122788;PITX1..3:0.301605359079;FOXM1:0.296813431542;NKX6-1,2:0.266767772819;TLX1..3_NFIC{dimer}:0.259575493284;ESRRA:0.242175757651;TFCP2:0.22771585717;TLX2:0.220609042883;HOX{A4,D4}:0.208879308743;TEAD1:0.20823698933;FOS_FOS{B,L1}_JUN{B,D}:0.161779774386;AR:0.14542728269;MAFB:0.144395568221;HMX1:0.142325195576;MYOD1:0.140796719752;NFIX:0.137717868517;POU6F1:0.13009587897;PAX5:0.129093817823;HSF1,2:0.119274231153;NFKB1_REL_RELA:0.0963893431615;LHX3,4:0.09200949946;FOXP1:0.084421044139;TFAP2B:0.0807953004612;NR3C1:0.0793632441523;NFE2:0.0786690292753;EGR1..3:0.0762251852122;FOX{I1,J2}:0.0713370921492;EBF1:0.0698574508173;NKX2-1,4:0.0687624834928;FOX{D1,D2}:0.0686891063406;STAT2,4,6:0.0624672092397;LMO2:0.0363802052324;SP1:0.0329777188289;NFE2L2:0.0279365666468;SRF:0.0274758855725;GATA4:0.0182027796037;NR1H4:0.014310865639;FOSL2:0.011243816171;ZFP161:0.00250403382506;ZBTB16:0.000557203546381;HNF1A:-0.0102563228374;ALX1:-0.0135473206264;RBPJ:-0.0227909855839;NKX3-1:-0.0258020539296;TOPORS:-0.0265152588228;TFAP2{A,C}:-0.0337468160469;HNF4A_NR2F1,2:-0.050853903772;TFDP1:-0.0541505385419;NHLH1,2:-0.0810483012478;TBP:-0.0811394036921;IKZF2:-0.0865757812547;MED-1{core}:-0.0995787254836;REST:-0.102807555445;POU1F1:-0.111965006568;KLF4:-0.123938281806;HIC1:-0.132947893489;MAZ:-0.14426234787;SNAI1..3:-0.149918624316;MTF1:-0.157484256353;GTF2I:-0.166984714869;AHR_ARNT_ARNT2:-0.167573614464;PAX3,7:-0.170074363037;FOX{F1,F2,J1}:-0.173859412943;HIF1A:-0.17951637059;ESR1:-0.192041795823;ELK1,4_GABP{A,B1}:-0.236443583863;YY1:-0.239267973504;ELF1,2,4:-0.241575186821;TFAP4:-0.254037297297;XBP1:-0.272374083462;MTE{core}:-0.277418770272;HLF:-0.283528210376;VSX1,2:-0.284354196251;RREB1:-0.292371208148;ATF5_CREB3:-0.300286772805;GCM1,2:-0.305789799831;JUN:-0.312339103402;PATZ1:-0.327396557629;BPTF:-0.329980193664;SOX{8,9,10}:-0.339536107997;HAND1,2:-0.342668220003;SPI1:-0.348952133076;PRDM1:-0.349079259045;RUNX1..3:-0.357987322062;MYB:-0.364895769485;CEBPA,B_DDIT3:-0.369935010388;ZNF143:-0.39403879878;MYFfamily:-0.397455009487;NR5A1,2:-0.410015670655;SOX17:-0.414396943599;OCT4_SOX2{dimer}:-0.42221872757;MZF1:-0.432766777126;LEF1_TCF7_TCF7L1,2:-0.440950486332;MEF2{A,B,C,D}:-0.456638378715;ADNP_IRX_SIX_ZHX:-0.458291543289;NKX2-2,8:-0.45953697174;ZNF423:-0.461624758513;GATA6:-0.464307488016;CDC5L:-0.464562468003;TAL1_TCF{3,4,12}:-0.479967014262;ETS1,2:-0.49489737773;ATF4:-0.504270903642;HMGA1,2:-0.510459857477;SPIB:-0.542582211666;E2F1..5:-0.547496339306;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582843742513;NFIL3:-0.594118659379;PAX4:-0.604506858832;DMAP1_NCOR{1,2}_SMARC:-0.608441896296;GFI1B:-0.612302755147;DBP:-0.622091951755;ZNF238:-0.650125371781;FOXL1:-0.65659258405;GFI1:-0.679038805747;CRX:-0.69475544835;SOX5:-0.69637713011;NFATC1..3:-0.700614124048;PBX1:-0.702577140684;NRF1:-0.71621493868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.723126810991;RFX1:-0.733530642783;SPZ1:-0.737429287059;BREu{core}:-0.73822257933;HOXA9_MEIS1:-0.742255583369;CUX2:-0.748716434189;PAX2:-0.78088959438;HOX{A5,B5}:-0.790143386184;MYBL2:-0.823366450373;SMAD1..7,9:-0.829879484874;NKX3-2:-0.842049841983;PAX1,9:-0.849069868108;PRRX1,2:-0.856051417195;STAT5{A,B}:-0.861869465394;POU5F1:-0.866467886797;PAX8:-0.886042163784;PDX1:-0.891538856809;EP300:-0.910730661862;NKX2-3_NKX2-5:-0.926829601109;RORA:-0.942249206075;PAX6:-0.974974494382;RFX2..5_RFXANK_RFXAP:-0.998472374129;NFY{A,B,C}:-1.01077572818;FOXA2:-1.0331675334;NANOG{mouse}:-1.03794306504;FOXN1:-1.05408367931;SOX2:-1.05985658301;FOXP3:-1.17273549719;POU3F1..4:-1.19501666325;ZNF384:-1.20697257173;TGIF1:-1.2142736307;ATF2:-1.2481264537;CREB1:-1.34137524335;NANOG:-1.36367368044;HBP1_HMGB_SSRP1_UBTF:-1.53619243573;SREBF1,2:-1.62639367752;STAT1,3:-2.57298775554 | |top_motifs=ONECUT1,2:2.09983241522;EN1,2:1.75871909186;UFEwm:1.15620811758;ALX4:1.12355292968;GLI1..3:1.05787877372;CDX1,2,4:1.05347938515;IRF7:0.993349708553;IRF1,2:0.985084257745;bHLH_family:0.973826580691;ZIC1..3:0.838488528227;EVI1:0.83821936994;AIRE:0.820574367614;RXR{A,B,G}:0.772942316892;NR6A1:0.740202685758;FOXQ1:0.738544702734;HES1:0.716205148258;TEF:0.67667923712;TBX4,5:0.662651293332;IKZF1:0.634246430602;PPARG:0.612606718457;NFE2L1:0.5810658077;RXRA_VDR{dimer}:0.558633145501;TP53:0.557664803501;ZNF148:0.550687061762;POU2F1..3:0.502702980979;T:0.499260655969;GZF1:0.478483514698;XCPE1{core}:0.464680986302;BACH2:0.459182910045;HOX{A6,A7,B6,B7}:0.435902897543;ATF6:0.431462110943;ZBTB6:0.42005656806;ZEB1:0.418956243135;FOXD3:0.41495864774;FOXO1,3,4:0.39115615327;ARID5B:0.363095915177;GTF2A1,2:0.31394122788;PITX1..3:0.301605359079;FOXM1:0.296813431542;NKX6-1,2:0.266767772819;TLX1..3_NFIC{dimer}:0.259575493284;ESRRA:0.242175757651;TFCP2:0.22771585717;TLX2:0.220609042883;HOX{A4,D4}:0.208879308743;TEAD1:0.20823698933;FOS_FOS{B,L1}_JUN{B,D}:0.161779774386;AR:0.14542728269;MAFB:0.144395568221;HMX1:0.142325195576;MYOD1:0.140796719752;NFIX:0.137717868517;POU6F1:0.13009587897;PAX5:0.129093817823;HSF1,2:0.119274231153;NFKB1_REL_RELA:0.0963893431615;LHX3,4:0.09200949946;FOXP1:0.084421044139;TFAP2B:0.0807953004612;NR3C1:0.0793632441523;NFE2:0.0786690292753;EGR1..3:0.0762251852122;FOX{I1,J2}:0.0713370921492;EBF1:0.0698574508173;NKX2-1,4:0.0687624834928;FOX{D1,D2}:0.0686891063406;STAT2,4,6:0.0624672092397;LMO2:0.0363802052324;SP1:0.0329777188289;NFE2L2:0.0279365666468;SRF:0.0274758855725;GATA4:0.0182027796037;NR1H4:0.014310865639;FOSL2:0.011243816171;ZFP161:0.00250403382506;ZBTB16:0.000557203546381;HNF1A:-0.0102563228374;ALX1:-0.0135473206264;RBPJ:-0.0227909855839;NKX3-1:-0.0258020539296;TOPORS:-0.0265152588228;TFAP2{A,C}:-0.0337468160469;HNF4A_NR2F1,2:-0.050853903772;TFDP1:-0.0541505385419;NHLH1,2:-0.0810483012478;TBP:-0.0811394036921;IKZF2:-0.0865757812547;MED-1{core}:-0.0995787254836;REST:-0.102807555445;POU1F1:-0.111965006568;KLF4:-0.123938281806;HIC1:-0.132947893489;MAZ:-0.14426234787;SNAI1..3:-0.149918624316;MTF1:-0.157484256353;GTF2I:-0.166984714869;AHR_ARNT_ARNT2:-0.167573614464;PAX3,7:-0.170074363037;FOX{F1,F2,J1}:-0.173859412943;HIF1A:-0.17951637059;ESR1:-0.192041795823;ELK1,4_GABP{A,B1}:-0.236443583863;YY1:-0.239267973504;ELF1,2,4:-0.241575186821;TFAP4:-0.254037297297;XBP1:-0.272374083462;MTE{core}:-0.277418770272;HLF:-0.283528210376;VSX1,2:-0.284354196251;RREB1:-0.292371208148;ATF5_CREB3:-0.300286772805;GCM1,2:-0.305789799831;JUN:-0.312339103402;PATZ1:-0.327396557629;BPTF:-0.329980193664;SOX{8,9,10}:-0.339536107997;HAND1,2:-0.342668220003;SPI1:-0.348952133076;PRDM1:-0.349079259045;RUNX1..3:-0.357987322062;MYB:-0.364895769485;CEBPA,B_DDIT3:-0.369935010388;ZNF143:-0.39403879878;MYFfamily:-0.397455009487;NR5A1,2:-0.410015670655;SOX17:-0.414396943599;OCT4_SOX2{dimer}:-0.42221872757;MZF1:-0.432766777126;LEF1_TCF7_TCF7L1,2:-0.440950486332;MEF2{A,B,C,D}:-0.456638378715;ADNP_IRX_SIX_ZHX:-0.458291543289;NKX2-2,8:-0.45953697174;ZNF423:-0.461624758513;GATA6:-0.464307488016;CDC5L:-0.464562468003;TAL1_TCF{3,4,12}:-0.479967014262;ETS1,2:-0.49489737773;ATF4:-0.504270903642;HMGA1,2:-0.510459857477;SPIB:-0.542582211666;E2F1..5:-0.547496339306;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582843742513;NFIL3:-0.594118659379;PAX4:-0.604506858832;DMAP1_NCOR{1,2}_SMARC:-0.608441896296;GFI1B:-0.612302755147;DBP:-0.622091951755;ZNF238:-0.650125371781;FOXL1:-0.65659258405;GFI1:-0.679038805747;CRX:-0.69475544835;SOX5:-0.69637713011;NFATC1..3:-0.700614124048;PBX1:-0.702577140684;NRF1:-0.71621493868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.723126810991;RFX1:-0.733530642783;SPZ1:-0.737429287059;BREu{core}:-0.73822257933;HOXA9_MEIS1:-0.742255583369;CUX2:-0.748716434189;PAX2:-0.78088959438;HOX{A5,B5}:-0.790143386184;MYBL2:-0.823366450373;SMAD1..7,9:-0.829879484874;NKX3-2:-0.842049841983;PAX1,9:-0.849069868108;PRRX1,2:-0.856051417195;STAT5{A,B}:-0.861869465394;POU5F1:-0.866467886797;PAX8:-0.886042163784;PDX1:-0.891538856809;EP300:-0.910730661862;NKX2-3_NKX2-5:-0.926829601109;RORA:-0.942249206075;PAX6:-0.974974494382;RFX2..5_RFXANK_RFXAP:-0.998472374129;NFY{A,B,C}:-1.01077572818;FOXA2:-1.0331675334;NANOG{mouse}:-1.03794306504;FOXN1:-1.05408367931;SOX2:-1.05985658301;FOXP3:-1.17273549719;POU3F1..4:-1.19501666325;ZNF384:-1.20697257173;TGIF1:-1.2142736307;ATF2:-1.2481264537;CREB1:-1.34137524335;NANOG:-1.36367368044;HBP1_HMGB_SSRP1_UBTF:-1.53619243573;SREBF1,2:-1.62639367752;STAT1,3:-2.57298775554 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10691-109F7;search_select_hide=table117:FF:10691-109F7 | |||
}} | }} | ||
Latest revision as of 14:33, 3 June 2020
| Name: | meningioma cell line:HKBMM |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11945 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11945
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11945
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.247 |
| 10 | 10 | 0.318 |
| 100 | 100 | 0.614 |
| 101 | 101 | 0.46 |
| 102 | 102 | 0.346 |
| 103 | 103 | 0.292 |
| 104 | 104 | 0.884 |
| 105 | 105 | 0.284 |
| 106 | 106 | 0.00199 |
| 107 | 107 | 1.58123e-4 |
| 108 | 108 | 0.0238 |
| 109 | 109 | 0.0517 |
| 11 | 11 | 0.153 |
| 110 | 110 | 0.282 |
| 111 | 111 | 0.15 |
| 112 | 112 | 0.309 |
| 113 | 113 | 0.438 |
| 114 | 114 | 0.0872 |
| 115 | 115 | 0.166 |
| 116 | 116 | 0.636 |
| 117 | 117 | 0.458 |
| 118 | 118 | 0.106 |
| 119 | 119 | 0.338 |
| 12 | 12 | 0.171 |
| 120 | 120 | 0.0209 |
| 121 | 121 | 0.92 |
| 122 | 122 | 0.317 |
| 123 | 123 | 0.398 |
| 124 | 124 | 0.201 |
| 125 | 125 | 0.221 |
| 126 | 126 | 0.575 |
| 127 | 127 | 0.48 |
| 128 | 128 | 0.146 |
| 129 | 129 | 0.861 |
| 13 | 13 | 0.282 |
| 130 | 130 | 0.0867 |
| 131 | 131 | 0.465 |
| 132 | 132 | 0.171 |
| 133 | 133 | 0.538 |
| 134 | 134 | 0.126 |
| 135 | 135 | 0.399 |
| 136 | 136 | 0.177 |
| 137 | 137 | 0.534 |
| 138 | 138 | 0.234 |
| 139 | 139 | 0.0214 |
| 14 | 14 | 0.573 |
| 140 | 140 | 0.896 |
| 141 | 141 | 0.955 |
| 142 | 142 | 0.808 |
| 143 | 143 | 0.173 |
| 144 | 144 | 0.822 |
| 145 | 145 | 0.147 |
| 146 | 146 | 0.67 |
| 147 | 147 | 0.907 |
| 148 | 148 | 0.189 |
| 149 | 149 | 0.218 |
| 15 | 15 | 0.192 |
| 150 | 150 | 0.0794 |
| 151 | 151 | 0.285 |
| 152 | 152 | 0.00325 |
| 153 | 153 | 0.73 |
| 154 | 154 | 0.93 |
| 155 | 155 | 0.469 |
| 156 | 156 | 0.8 |
| 157 | 157 | 0.539 |
| 158 | 158 | 0.163 |
| 159 | 159 | 0.277 |
| 16 | 16 | 0.158 |
| 160 | 160 | 0.485 |
| 161 | 161 | 0.356 |
| 162 | 162 | 0.258 |
| 163 | 163 | 0.807 |
| 164 | 164 | 0.23 |
| 165 | 165 | 0.922 |
| 166 | 166 | 0.731 |
| 167 | 167 | 0.335 |
| 168 | 168 | 0.685 |
| 169 | 169 | 0.0304 |
| 17 | 17 | 0.269 |
| 18 | 18 | 0.0864 |
| 19 | 19 | 0.0714 |
| 2 | 2 | 0.556 |
| 20 | 20 | 0.415 |
| 21 | 21 | 0.301 |
| 22 | 22 | 0.314 |
| 23 | 23 | 0.0785 |
| 24 | 24 | 0.875 |
| 25 | 25 | 0.225 |
| 26 | 26 | 0.698 |
| 27 | 27 | 0.309 |
| 28 | 28 | 0.857 |
| 29 | 29 | 0.0834 |
| 3 | 3 | 0.0936 |
| 30 | 30 | 0.855 |
| 31 | 31 | 0.579 |
| 32 | 32 | 0.476 |
| 33 | 33 | 0.965 |
| 34 | 34 | 0.993 |
| 35 | 35 | 0.507 |
| 36 | 36 | 0.821 |
| 37 | 37 | 0.0656 |
| 38 | 38 | 0.652 |
| 39 | 39 | 0.213 |
| 4 | 4 | 0.738 |
| 40 | 40 | 0.789 |
| 41 | 41 | 0.344 |
| 42 | 42 | 0.336 |
| 43 | 43 | 0.231 |
| 44 | 44 | 0.017 |
| 45 | 45 | 0.43 |
| 46 | 46 | 0.0804 |
| 47 | 47 | 0.378 |
| 48 | 48 | 0.22 |
| 49 | 49 | 0.458 |
| 5 | 5 | 0.796 |
| 50 | 50 | 0.58 |
| 51 | 51 | 0.397 |
| 52 | 52 | 0.941 |
| 53 | 53 | 0.621 |
| 54 | 54 | 0.323 |
| 55 | 55 | 0.343 |
| 56 | 56 | 0.178 |
| 57 | 57 | 0.511 |
| 58 | 58 | 0.843 |
| 59 | 59 | 0.0119 |
| 6 | 6 | 0.846 |
| 60 | 60 | 0.469 |
| 61 | 61 | 0.423 |
| 62 | 62 | 0.537 |
| 63 | 63 | 0.194 |
| 64 | 64 | 0.493 |
| 65 | 65 | 0.148 |
| 66 | 66 | 0.642 |
| 67 | 67 | 0.467 |
| 68 | 68 | 0.679 |
| 69 | 69 | 0.168 |
| 7 | 7 | 0.61 |
| 70 | 70 | 0.0122 |
| 71 | 71 | 0.106 |
| 72 | 72 | 0.82 |
| 73 | 73 | 0.0152 |
| 74 | 74 | 0.461 |
| 75 | 75 | 0.0666 |
| 76 | 76 | 0.864 |
| 77 | 77 | 0.0893 |
| 78 | 78 | 0.0669 |
| 79 | 79 | 0.257 |
| 8 | 8 | 0.0429 |
| 80 | 80 | 0.0779 |
| 81 | 81 | 0.608 |
| 82 | 82 | 0.521 |
| 83 | 83 | 0.773 |
| 84 | 84 | 0.853 |
| 85 | 85 | 0.0292 |
| 86 | 86 | 0.748 |
| 87 | 87 | 0.00883 |
| 88 | 88 | 0.602 |
| 89 | 89 | 0.127 |
| 9 | 9 | 0.892 |
| 90 | 90 | 0.264 |
| 91 | 91 | 0.986 |
| 92 | 92 | 0.14 |
| 93 | 93 | 0.532 |
| 94 | 94 | 0.609 |
| 95 | 95 | 0.341 |
| 96 | 96 | 0.78 |
| 97 | 97 | 0.826 |
| 98 | 98 | 0.735 |
| 99 | 99 | 0.00531 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11945
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002379 meningothelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104398 meningioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002379 (meningothelial cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
3620 (central nervous system cancer)
3565 (meningioma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0104398 (meningioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
