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{{f5samples
{{f5samples
|id=FF:10703-109H1
|DRA_sample_Accession=CAGE@SAMD00005215
|name=carcinoid cell line:NCI-H1770, biol_rep1
|accession_numbers=CAGE;DRX007842;DRR008714;DRZ000139;DRZ001524;DRZ011489;DRZ012874
|sample_id=10703
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=109H1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057
|rna_box=109
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:3119,DOID:1115
|rna_position=H1
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0101533,FF:0100460,FF:0100729,FF:0103764
|sample_cell_lot=
|comment=
|sample_cell_catalog=CRL-5893
|created_by=
|sample_company=ATCC
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=57
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.12000
|rna_od260/280=2.09000
|sample_cell_type=neuroendocrine cell
|sample_cell_line=NCI-H1770
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=carcinoid
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=41.66644
|rna_concentration=0.88652
|sample_note=
|profile_hcage=CNhs11834,LSID829,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:3119,DOID:4
|sample_description=
 
|fonse_cell_line=FF:0100400,FF:0100453,FF:0101533
|fonse_cell_line=FF:0100400,FF:0100453,FF:0101533
|fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0101533
|fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0101533
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg38.nobarcode.ctss.bed.gz
|id=FF:10703-109H1
|is_a=EFO:0002091;;FF:0000210;;FF:0100729;;FF:0103764
|is_obsolete=
|library_id=CNhs11834
|library_id_phase_based=2:CNhs11834
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10703
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10703
|name=carcinoid cell line:NCI-H1770
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11834,LSID829,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=109
|rna_catalog_number=
|rna_concentration=0.88652
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.12
|rna_od260/280=2.09
|rna_position=H1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=109H1
|rna_weight_ug=41.66644
|sample_age=57
|sample_category=cell lines
|sample_cell_catalog=CRL-5893
|sample_cell_line=NCI-H1770
|sample_cell_lot=
|sample_cell_type=neuroendocrine cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=carcinoid
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.20773122968251e-280!GO:0043226;organelle;1.60879128864598e-245!GO:0043229;intracellular organelle;4.55299698715472e-245!GO:0043231;intracellular membrane-bound organelle;2.71510460297744e-243!GO:0043227;membrane-bound organelle;5.32448658161605e-243!GO:0044422;organelle part;1.64698462182196e-178!GO:0044446;intracellular organelle part;3.02825207783683e-177!GO:0005737;cytoplasm;6.21790638786914e-175!GO:0044444;cytoplasmic part;2.91055638681326e-134!GO:0032991;macromolecular complex;2.99960803919697e-116!GO:0005634;nucleus;1.10122116914045e-108!GO:0044237;cellular metabolic process;2.31104927258078e-97!GO:0030529;ribonucleoprotein complex;2.87360544110897e-94!GO:0044238;primary metabolic process;8.74415493057523e-94!GO:0044428;nuclear part;9.63284910648662e-89!GO:0043170;macromolecule metabolic process;1.16043781489084e-84!GO:0003723;RNA binding;2.60129101425971e-82!GO:0043233;organelle lumen;3.48153514434253e-82!GO:0031974;membrane-enclosed lumen;3.48153514434253e-82!GO:0005739;mitochondrion;4.2340892562822e-79!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.42175480190669e-62!GO:0006396;RNA processing;6.4780357359345e-62!GO:0043234;protein complex;6.29598661598384e-60!GO:0043283;biopolymer metabolic process;4.45024982913676e-59!GO:0044429;mitochondrial part;2.02519299096665e-56!GO:0031090;organelle membrane;8.25426375070941e-56!GO:0016043;cellular component organization and biogenesis;4.8647474726157e-55!GO:0010467;gene expression;8.77315072602275e-54!GO:0005840;ribosome;1.44802561191471e-52!GO:0031967;organelle envelope;7.7997859112308e-52!GO:0031975;envelope;1.51318843273597e-51!GO:0031981;nuclear lumen;2.3314805642055e-49!GO:0005515;protein binding;1.09552297592984e-48!GO:0016071;mRNA metabolic process;4.13588072529493e-46!GO:0006412;translation;2.00540062606791e-44!GO:0006259;DNA metabolic process;2.13178491515412e-44!GO:0006996;organelle organization and biogenesis;2.30696359112489e-44!GO:0003735;structural constituent of ribosome;2.55649246040312e-44!GO:0015031;protein transport;3.45907085325588e-44!GO:0008380;RNA splicing;2.97454638111038e-43!GO:0033036;macromolecule localization;3.48177314580111e-43!GO:0003676;nucleic acid binding;5.21324807336225e-41!GO:0006397;mRNA processing;7.72546433731961e-41!GO:0043228;non-membrane-bound organelle;1.42333772919684e-40!GO:0043232;intracellular non-membrane-bound organelle;1.42333772919684e-40!GO:0009058;biosynthetic process;5.20899902003511e-40!GO:0033279;ribosomal subunit;1.62886792964114e-39!GO:0008104;protein localization;4.7954729667898e-39!GO:0045184;establishment of protein localization;5.14695786127238e-39!GO:0046907;intracellular transport;2.80513666838835e-38!GO:0044249;cellular biosynthetic process;8.12898787745354e-38!GO:0005740;mitochondrial envelope;4.37192429872567e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.05030954903502e-36!GO:0031966;mitochondrial membrane;2.54964221688668e-34!GO:0019866;organelle inner membrane;4.78292955212715e-34!GO:0005829;cytosol;5.87192916552582e-34!GO:0009059;macromolecule biosynthetic process;8.6702853551781e-33!GO:0007049;cell cycle;1.30499885096877e-32!GO:0065003;macromolecular complex assembly;1.45109782107976e-32!GO:0005743;mitochondrial inner membrane;1.17375470613022e-31!GO:0019538;protein metabolic process;4.302904374231e-31!GO:0005681;spliceosome;9.63121922721227e-31!GO:0005654;nucleoplasm;6.65102596193146e-30!GO:0000166;nucleotide binding;6.93363445123286e-30!GO:0022607;cellular component assembly;7.13284432748192e-30!GO:0051649;establishment of cellular localization;8.08943166138389e-30!GO:0006974;response to DNA damage stimulus;9.54129359419521e-30!GO:0051641;cellular localization;2.28485272678695e-29!GO:0006886;intracellular protein transport;2.28485272678695e-29!GO:0016070;RNA metabolic process;3.58284963653921e-29!GO:0044260;cellular macromolecule metabolic process;2.63574263838688e-28!GO:0044267;cellular protein metabolic process;8.03485063840927e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.37098937269143e-27!GO:0006281;DNA repair;1.90817999229961e-27!GO:0005694;chromosome;8.72060526553918e-27!GO:0022402;cell cycle process;8.09809579643898e-25!GO:0006119;oxidative phosphorylation;1.5785720734453e-24!GO:0044455;mitochondrial membrane part;1.58352153026298e-24!GO:0044451;nucleoplasm part;2.32950456937679e-24!GO:0044445;cytosolic part;4.93003109785555e-24!GO:0012505;endomembrane system;8.50051112243957e-24!GO:0000278;mitotic cell cycle;1.53280249674803e-23!GO:0031980;mitochondrial lumen;1.80235243541698e-23!GO:0005759;mitochondrial matrix;1.80235243541698e-23!GO:0044427;chromosomal part;2.16390533020595e-23!GO:0016462;pyrophosphatase activity;8.76203151111161e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.22842303698425e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.61638803119509e-22!GO:0017111;nucleoside-triphosphatase activity;4.49753704870807e-22!GO:0006260;DNA replication;5.52634444707495e-22!GO:0015935;small ribosomal subunit;2.99771087349553e-21!GO:0022403;cell cycle phase;3.45948922356629e-21!GO:0022618;protein-RNA complex assembly;4.87518105172668e-20!GO:0005730;nucleolus;5.42253790661575e-20!GO:0032553;ribonucleotide binding;5.43476057051759e-20!GO:0032555;purine ribonucleotide binding;5.43476057051759e-20!GO:0051276;chromosome organization and biogenesis;6.05201948862903e-20!GO:0015934;large ribosomal subunit;1.57587953196699e-19!GO:0000087;M phase of mitotic cell cycle;2.03814016519965e-19!GO:0016874;ligase activity;3.55470560704502e-19!GO:0007067;mitosis;4.04487263859771e-19!GO:0009719;response to endogenous stimulus;9.16070144421953e-19!GO:0017076;purine nucleotide binding;1.01953321606996e-18!GO:0005746;mitochondrial respiratory chain;1.03877179898194e-18!GO:0006457;protein folding;1.20541270973693e-18!GO:0000279;M phase;3.54114950803399e-18!GO:0005524;ATP binding;1.3962830767369e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.84718232923396e-17!GO:0003954;NADH dehydrogenase activity;1.84718232923396e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.84718232923396e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.81526849160407e-17!GO:0008135;translation factor activity, nucleic acid binding;2.90619252849066e-17!GO:0032559;adenyl ribonucleotide binding;3.32235278607732e-17!GO:0006512;ubiquitin cycle;3.32235278607732e-17!GO:0044265;cellular macromolecule catabolic process;3.77532784819956e-17!GO:0015630;microtubule cytoskeleton;1.18552955636034e-16!GO:0005761;mitochondrial ribosome;1.48427572345006e-16!GO:0000313;organellar ribosome;1.48427572345006e-16!GO:0051301;cell division;1.70589474982931e-16!GO:0042254;ribosome biogenesis and assembly;1.85162551280395e-16!GO:0051186;cofactor metabolic process;9.66656427056417e-16!GO:0030554;adenyl nucleotide binding;1.0086253910452e-15!GO:0005635;nuclear envelope;1.33323160474456e-15!GO:0030964;NADH dehydrogenase complex (quinone);2.60930129461497e-15!GO:0045271;respiratory chain complex I;2.60930129461497e-15!GO:0005747;mitochondrial respiratory chain complex I;2.60930129461497e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.70742382727053e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;2.99948598394372e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.07647254734729e-15!GO:0000375;RNA splicing, via transesterification reactions;3.07647254734729e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.07647254734729e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.21213057610674e-15!GO:0031965;nuclear membrane;3.43562064395746e-15!GO:0019941;modification-dependent protein catabolic process;4.30432483151648e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.30432483151648e-15!GO:0042775;organelle ATP synthesis coupled electron transport;4.38495082084021e-15!GO:0042773;ATP synthesis coupled electron transport;4.38495082084021e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.28540984439772e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.0189651962449e-15!GO:0044257;cellular protein catabolic process;1.23927503397982e-14!GO:0016887;ATPase activity;1.30359020559605e-14!GO:0006323;DNA packaging;1.32566640504767e-14!GO:0044453;nuclear membrane part;2.46393449565398e-14!GO:0042623;ATPase activity, coupled;2.90993801410009e-14!GO:0005794;Golgi apparatus;2.98956079668713e-14!GO:0009057;macromolecule catabolic process;3.65189736592245e-14!GO:0044248;cellular catabolic process;3.7027394784879e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.46288071866402e-14!GO:0005783;endoplasmic reticulum;6.64095685691501e-14!GO:0051082;unfolded protein binding;1.06213823234446e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.12852551786537e-13!GO:0043285;biopolymer catabolic process;1.82998756680357e-13!GO:0006605;protein targeting;1.9870484673988e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.4253275184185e-13!GO:0048193;Golgi vesicle transport;2.87325927364686e-13!GO:0048770;pigment granule;2.94596945837059e-13!GO:0042470;melanosome;2.94596945837059e-13!GO:0044432;endoplasmic reticulum part;3.02493385776916e-13!GO:0005643;nuclear pore;4.38577688492891e-13!GO:0016192;vesicle-mediated transport;5.77856101699772e-13!GO:0006732;coenzyme metabolic process;7.60307255753335e-13!GO:0006413;translational initiation;9.12399578439079e-13!GO:0006399;tRNA metabolic process;1.31691906015845e-12!GO:0003743;translation initiation factor activity;2.26154378388204e-12!GO:0006446;regulation of translational initiation;3.02543464794225e-12!GO:0008565;protein transporter activity;3.5751557748216e-12!GO:0004386;helicase activity;3.62909440559258e-12!GO:0016604;nuclear body;4.44834982584652e-12!GO:0006364;rRNA processing;1.21881196177805e-11!GO:0006403;RNA localization;1.74033154067365e-11!GO:0000785;chromatin;1.96945825528767e-11!GO:0030163;protein catabolic process;2.09118916192841e-11!GO:0050657;nucleic acid transport;2.16430347113446e-11!GO:0051236;establishment of RNA localization;2.16430347113446e-11!GO:0050658;RNA transport;2.16430347113446e-11!GO:0006333;chromatin assembly or disassembly;2.46852256703267e-11!GO:0065004;protein-DNA complex assembly;2.49263360772213e-11!GO:0016072;rRNA metabolic process;2.66962237802521e-11!GO:0006163;purine nucleotide metabolic process;2.73418820993773e-11!GO:0008134;transcription factor binding;3.35729447648199e-11!GO:0009259;ribonucleotide metabolic process;3.4355191538383e-11!GO:0065002;intracellular protein transport across a membrane;6.0108820617431e-11!GO:0006261;DNA-dependent DNA replication;8.81086717460305e-11!GO:0008026;ATP-dependent helicase activity;1.03087457871321e-10!GO:0000775;chromosome, pericentric region;1.83863150428373e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.28687852404554e-10!GO:0043566;structure-specific DNA binding;2.33387582382376e-10!GO:0003697;single-stranded DNA binding;3.4636966045809e-10!GO:0016607;nuclear speck;3.63119552846721e-10!GO:0006164;purine nucleotide biosynthetic process;3.7374030835502e-10!GO:0046930;pore complex;3.76519758461294e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.77522763018852e-10!GO:0051726;regulation of cell cycle;5.1801593518654e-10!GO:0005789;endoplasmic reticulum membrane;7.11805288914454e-10!GO:0009055;electron carrier activity;7.53239265055132e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.56807631099821e-10!GO:0000074;regulation of progression through cell cycle;9.40092019469846e-10!GO:0009150;purine ribonucleotide metabolic process;9.40092019469846e-10!GO:0043412;biopolymer modification;1.02354769121728e-09!GO:0009260;ribonucleotide biosynthetic process;1.27594486656726e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.29600433181103e-09!GO:0006913;nucleocytoplasmic transport;1.63913573995628e-09!GO:0051028;mRNA transport;1.89751014772145e-09!GO:0005819;spindle;2.43784461387757e-09!GO:0016568;chromatin modification;2.55781763699234e-09!GO:0051169;nuclear transport;3.57688781691666e-09!GO:0007005;mitochondrion organization and biogenesis;3.98606937747328e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.03914279983381e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.03914279983381e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.03914279983381e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.03914279983381e-09!GO:0019829;cation-transporting ATPase activity;4.27304221408242e-09!GO:0005813;centrosome;4.42071879982113e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.51747075966035e-09!GO:0016779;nucleotidyltransferase activity;4.70199735362158e-09!GO:0051188;cofactor biosynthetic process;5.05662610990752e-09!GO:0009141;nucleoside triphosphate metabolic process;5.66493922976986e-09!GO:0009060;aerobic respiration;6.02700856263235e-09!GO:0044431;Golgi apparatus part;6.71973552059951e-09!GO:0043038;amino acid activation;8.15587787309517e-09!GO:0006418;tRNA aminoacylation for protein translation;8.15587787309517e-09!GO:0043039;tRNA aminoacylation;8.15587787309517e-09!GO:0005815;microtubule organizing center;8.18794751768905e-09!GO:0015986;ATP synthesis coupled proton transport;8.88068438770655e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.88068438770655e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.17308329640653e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.17308329640653e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.1831431114176e-08!GO:0048475;coated membrane;1.28506707436546e-08!GO:0030117;membrane coat;1.28506707436546e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.31578314447953e-08!GO:0031988;membrane-bound vesicle;1.3398654210584e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.80664311011133e-08!GO:0031982;vesicle;1.82459558700561e-08!GO:0031410;cytoplasmic vesicle;2.1070078841329e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.29188881978501e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.29188881978501e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.97672754913426e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.7191280839374e-08!GO:0045333;cellular respiration;3.82361827060081e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.88677344606205e-08!GO:0046034;ATP metabolic process;3.93285590198044e-08!GO:0006464;protein modification process;4.04861865645799e-08!GO:0005874;microtubule;4.44691068166644e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.01567984719417e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.17473758445624e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.17473758445624e-08!GO:0006334;nucleosome assembly;6.6033103842448e-08!GO:0007017;microtubule-based process;8.24853264976078e-08!GO:0016740;transferase activity;8.43735858632742e-08!GO:0000245;spliceosome assembly;1.18889802958419e-07!GO:0031497;chromatin assembly;1.19564439740155e-07!GO:0006099;tricarboxylic acid cycle;1.39449175112544e-07!GO:0046356;acetyl-CoA catabolic process;1.39449175112544e-07!GO:0005657;replication fork;1.55482644042035e-07!GO:0009108;coenzyme biosynthetic process;1.57624198037658e-07!GO:0006754;ATP biosynthetic process;1.75431918895924e-07!GO:0006753;nucleoside phosphate metabolic process;1.75431918895924e-07!GO:0006084;acetyl-CoA metabolic process;1.79950091150945e-07!GO:0017038;protein import;1.8075072642232e-07!GO:0006461;protein complex assembly;2.11011903979705e-07!GO:0045045;secretory pathway;2.95705991488047e-07!GO:0003712;transcription cofactor activity;3.21953455679609e-07!GO:0000139;Golgi membrane;3.36087672872191e-07!GO:0009056;catabolic process;3.46939372563802e-07!GO:0030120;vesicle coat;3.69639525399499e-07!GO:0030662;coated vesicle membrane;3.69639525399499e-07!GO:0045259;proton-transporting ATP synthase complex;3.90081970526327e-07!GO:0043687;post-translational protein modification;4.45799555763548e-07!GO:0043623;cellular protein complex assembly;4.99090829498297e-07!GO:0008639;small protein conjugating enzyme activity;5.70575702283501e-07!GO:0003899;DNA-directed RNA polymerase activity;6.52355294847058e-07!GO:0006752;group transfer coenzyme metabolic process;7.26613806122829e-07!GO:0009117;nucleotide metabolic process;7.51842908981009e-07!GO:0006888;ER to Golgi vesicle-mediated transport;9.03166628312819e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.56158834333781e-07!GO:0008094;DNA-dependent ATPase activity;1.01945122906048e-06!GO:0004842;ubiquitin-protein ligase activity;1.05398211650947e-06!GO:0009109;coenzyme catabolic process;1.08605915328072e-06!GO:0019787;small conjugating protein ligase activity;1.29434013914714e-06!GO:0008654;phospholipid biosynthetic process;1.36778646023127e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.51663717934345e-06!GO:0051329;interphase of mitotic cell cycle;1.8823836864971e-06!GO:0003724;RNA helicase activity;1.90383095035263e-06!GO:0015631;tubulin binding;2.30612853219067e-06!GO:0005667;transcription factor complex;2.37779516623662e-06!GO:0005793;ER-Golgi intermediate compartment;2.69988011718222e-06!GO:0051325;interphase;3.55644608690053e-06!GO:0051187;cofactor catabolic process;3.58308001202147e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.72805971117117e-06!GO:0016881;acid-amino acid ligase activity;3.96126398232537e-06!GO:0000075;cell cycle checkpoint;4.47862765862495e-06!GO:0006302;double-strand break repair;5.2816276457326e-06!GO:0006383;transcription from RNA polymerase III promoter;5.76394436687693e-06!GO:0007051;spindle organization and biogenesis;5.82272629410031e-06!GO:0000314;organellar small ribosomal subunit;5.90897565352864e-06!GO:0005763;mitochondrial small ribosomal subunit;5.90897565352864e-06!GO:0006839;mitochondrial transport;6.52407210031215e-06!GO:0016853;isomerase activity;7.61218599035819e-06!GO:0005762;mitochondrial large ribosomal subunit;8.06099317496879e-06!GO:0000315;organellar large ribosomal subunit;8.06099317496879e-06!GO:0006366;transcription from RNA polymerase II promoter;1.13298457688893e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.14534895851299e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.15755699917347e-05!GO:0005798;Golgi-associated vesicle;1.1653240764956e-05!GO:0006613;cotranslational protein targeting to membrane;1.1889001397998e-05!GO:0003924;GTPase activity;1.9253927237637e-05!GO:0019222;regulation of metabolic process;1.96044215660617e-05!GO:0005768;endosome;2.03002438040366e-05!GO:0003690;double-stranded DNA binding;2.48714428073151e-05!GO:0006350;transcription;3.13180283423408e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.43939127946246e-05!GO:0005525;GTP binding;4.56055522178688e-05!GO:0004298;threonine endopeptidase activity;4.7737803300181e-05!GO:0032446;protein modification by small protein conjugation;4.84597915699727e-05!GO:0051168;nuclear export;5.00891656204766e-05!GO:0016363;nuclear matrix;5.08916220786611e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.24193361537287e-05!GO:0003684;damaged DNA binding;5.26396828288529e-05!GO:0006626;protein targeting to mitochondrion;5.26548888204324e-05!GO:0008033;tRNA processing;5.30526964230319e-05!GO:0016741;transferase activity, transferring one-carbon groups;5.97907507032718e-05!GO:0003729;mRNA binding;6.02603009860919e-05!GO:0008186;RNA-dependent ATPase activity;6.26384452403341e-05!GO:0046474;glycerophospholipid biosynthetic process;6.39151839279013e-05!GO:0048471;perinuclear region of cytoplasm;7.73049680061773e-05!GO:0009165;nucleotide biosynthetic process;8.11053026614985e-05!GO:0016567;protein ubiquitination;8.13255503126242e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.82913852366453e-05!GO:0045454;cell redox homeostasis;8.92315482567019e-05!GO:0016126;sterol biosynthetic process;0.000101195769658743!GO:0016859;cis-trans isomerase activity;0.000108823172290151!GO:0005048;signal sequence binding;0.000109550481006433!GO:0000059;protein import into nucleus, docking;0.000111874721036398!GO:0006414;translational elongation;0.000113881238513!GO:0008168;methyltransferase activity;0.00011514288845051!GO:0051170;nuclear import;0.000118342694836465!GO:0007010;cytoskeleton organization and biogenesis;0.000127822897505699!GO:0000776;kinetochore;0.00013434876441655!GO:0046467;membrane lipid biosynthetic process;0.000134418016296025!GO:0043021;ribonucleoprotein binding;0.000134418016296025!GO:0000151;ubiquitin ligase complex;0.000140530256872142!GO:0003682;chromatin binding;0.000141481397141946!GO:0005788;endoplasmic reticulum lumen;0.000146164828008653!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000150482378293839!GO:0051539;4 iron, 4 sulfur cluster binding;0.000156030917747925!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000156260012713651!GO:0031970;organelle envelope lumen;0.000162627353655375!GO:0044440;endosomal part;0.000165844410874929!GO:0010008;endosome membrane;0.000165844410874929!GO:0008017;microtubule binding;0.00017210971607579!GO:0004004;ATP-dependent RNA helicase activity;0.000177486414299463!GO:0006612;protein targeting to membrane;0.00017938762836144!GO:0030135;coated vesicle;0.000189675540122203!GO:0043681;protein import into mitochondrion;0.000193388411217578!GO:0005758;mitochondrial intermembrane space;0.000198312156656669!GO:0007059;chromosome segregation;0.000208165845308191!GO:0051540;metal cluster binding;0.000211198421949579!GO:0051536;iron-sulfur cluster binding;0.000211198421949579!GO:0030867;rough endoplasmic reticulum membrane;0.000213655118968134!GO:0006793;phosphorus metabolic process;0.000213883874285406!GO:0006796;phosphate metabolic process;0.000213883874285406!GO:0007006;mitochondrial membrane organization and biogenesis;0.000254104799703483!GO:0000228;nuclear chromosome;0.000255913143794783!GO:0031124;mRNA 3'-end processing;0.000270956251231418!GO:0006606;protein import into nucleus;0.000272304176862148!GO:0003746;translation elongation factor activity;0.00027819341083372!GO:0016787;hydrolase activity;0.000309674626642859!GO:0031968;organelle outer membrane;0.000322151104547329!GO:0008250;oligosaccharyl transferase complex;0.000322151104547329!GO:0044452;nucleolar part;0.000324326962850694!GO:0004576;oligosaccharyl transferase activity;0.000337615756165635!GO:0004527;exonuclease activity;0.000338466163649121!GO:0005741;mitochondrial outer membrane;0.000358818013692381!GO:0032561;guanyl ribonucleotide binding;0.000370152723418956!GO:0019001;guanyl nucleotide binding;0.000370152723418956!GO:0030137;COPI-coated vesicle;0.000383799342099028!GO:0019867;outer membrane;0.000395028703504398!GO:0030118;clathrin coat;0.000404847279299429!GO:0003678;DNA helicase activity;0.000409906894580896!GO:0007052;mitotic spindle organization and biogenesis;0.000411547723105397!GO:0046489;phosphoinositide biosynthetic process;0.000422854779676662!GO:0006310;DNA recombination;0.000427004943795137!GO:0032940;secretion by cell;0.000434220895451005!GO:0008610;lipid biosynthetic process;0.000449659343305862!GO:0006891;intra-Golgi vesicle-mediated transport;0.000452619686048474!GO:0031323;regulation of cellular metabolic process;0.00045731840247963!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000467646621298678!GO:0005684;U2-dependent spliceosome;0.000481283904925641!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00049036660322082!GO:0015399;primary active transmembrane transporter activity;0.00049036660322082!GO:0006352;transcription initiation;0.00049564468804002!GO:0045786;negative regulation of progression through cell cycle;0.00049564468804002!GO:0005875;microtubule associated complex;0.000515258210814272!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000526841412416427!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000526841412416427!GO:0006695;cholesterol biosynthetic process;0.000565487791601136!GO:0050794;regulation of cellular process;0.000565487791601136!GO:0007088;regulation of mitosis;0.000568473425802407!GO:0032774;RNA biosynthetic process;0.000574370884658508!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000584215701862358!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000584215701862358!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000584215701862358!GO:0003677;DNA binding;0.000593354264000917!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000606486298643457!GO:0051920;peroxiredoxin activity;0.000614155868560902!GO:0019899;enzyme binding;0.000662605303451377!GO:0031072;heat shock protein binding;0.000667504856180043!GO:0006351;transcription, DNA-dependent;0.000739486673678815!GO:0030880;RNA polymerase complex;0.000739486673678815!GO:0048500;signal recognition particle;0.000780502723067373!GO:0043596;nuclear replication fork;0.000875981279472069!GO:0030663;COPI coated vesicle membrane;0.000934446260172233!GO:0030126;COPI vesicle coat;0.000934446260172233!GO:0010468;regulation of gene expression;0.000936905419796632!GO:0006284;base-excision repair;0.000936905419796632!GO:0005770;late endosome;0.00094518165255042!GO:0005876;spindle microtubule;0.000949347555556348!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000965055879510413!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00100296432313416!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00104460759696683!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00104460759696683!GO:0042393;histone binding;0.00104460759696683!GO:0006144;purine base metabolic process;0.00111178598907294!GO:0008312;7S RNA binding;0.00113403329309179!GO:0006091;generation of precursor metabolites and energy;0.0011362970991982!GO:0015992;proton transport;0.00120643411625648!GO:0006405;RNA export from nucleus;0.00120899938298668!GO:0006378;mRNA polyadenylation;0.00122091547706302!GO:0009112;nucleobase metabolic process;0.00122812293547551!GO:0006818;hydrogen transport;0.00123022401855196!GO:0016310;phosphorylation;0.00130878830091592!GO:0003711;transcription elongation regulator activity;0.00130886428345932!GO:0044450;microtubule organizing center part;0.00133270802394553!GO:0005905;coated pit;0.00135797016485018!GO:0032508;DNA duplex unwinding;0.00141779719915845!GO:0032392;DNA geometric change;0.00141779719915845!GO:0000786;nucleosome;0.00146714894907704!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00157133682271594!GO:0000428;DNA-directed RNA polymerase complex;0.00157133682271594!GO:0003713;transcription coactivator activity;0.0015751071429004!GO:0006270;DNA replication initiation;0.00158422516020576!GO:0051052;regulation of DNA metabolic process;0.0015997520530875!GO:0030133;transport vesicle;0.00171328095155944!GO:0022890;inorganic cation transmembrane transporter activity;0.0017205925553181!GO:0032259;methylation;0.00173369405405912!GO:0003714;transcription corepressor activity;0.00176300833163419!GO:0000049;tRNA binding;0.00190699414838631!GO:0000725;recombinational repair;0.00192581069480082!GO:0000724;double-strand break repair via homologous recombination;0.00192581069480082!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00197595650437419!GO:0045047;protein targeting to ER;0.00197595650437419!GO:0006007;glucose catabolic process;0.00200934710398416!GO:0051789;response to protein stimulus;0.00203565285312461!GO:0006986;response to unfolded protein;0.00203565285312461!GO:0016491;oxidoreductase activity;0.00207177356755817!GO:0031123;RNA 3'-end processing;0.00213878800578717!GO:0006611;protein export from nucleus;0.00218333830009615!GO:0051087;chaperone binding;0.00221910350157544!GO:0043284;biopolymer biosynthetic process;0.00222092327834618!GO:0030658;transport vesicle membrane;0.00222321835811364!GO:0006650;glycerophospholipid metabolic process;0.00224829688863921!GO:0018196;peptidyl-asparagine modification;0.00228928217354085!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00228928217354085!GO:0012501;programmed cell death;0.00231503220919649!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00231586342854899!GO:0006268;DNA unwinding during replication;0.00239131231920026!GO:0009116;nucleoside metabolic process;0.00241108750904945!GO:0005885;Arp2/3 protein complex;0.00241590425688568!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00261071122084651!GO:0030176;integral to endoplasmic reticulum membrane;0.00266734602025076!GO:0000792;heterochromatin;0.0026980686010694!GO:0006915;apoptosis;0.0026980686010694!GO:0044454;nuclear chromosome part;0.00271134379973333!GO:0000910;cytokinesis;0.00274881193291757!GO:0006595;polyamine metabolic process;0.00297204376291693!GO:0051427;hormone receptor binding;0.0030833194162925!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0031134982068396!GO:0005637;nuclear inner membrane;0.00335496414777226!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00342536553450569!GO:0004518;nuclease activity;0.00344525906807977!GO:0006289;nucleotide-excision repair;0.00361944315179676!GO:0044262;cellular carbohydrate metabolic process;0.00372309479008779!GO:0016272;prefoldin complex;0.00384611824904102!GO:0007093;mitotic cell cycle checkpoint;0.00402092966023232!GO:0016251;general RNA polymerase II transcription factor activity;0.00418367744712714!GO:0008287;protein serine/threonine phosphatase complex;0.00418984245489857!GO:0030660;Golgi-associated vesicle membrane;0.00418984245489857!GO:0000922;spindle pole;0.00434394602933075!GO:0032200;telomere organization and biogenesis;0.00438741855849673!GO:0000723;telomere maintenance;0.00438741855849673!GO:0006338;chromatin remodeling;0.00445037638129524!GO:0030119;AP-type membrane coat adaptor complex;0.00463666329885837!GO:0008139;nuclear localization sequence binding;0.00468512730056451!GO:0019318;hexose metabolic process;0.00478701220022992!GO:0048487;beta-tubulin binding;0.00481392100894657!GO:0005791;rough endoplasmic reticulum;0.00489050038530783!GO:0043601;nuclear replisome;0.00490499876699215!GO:0030894;replisome;0.00490499876699215!GO:0005669;transcription factor TFIID complex;0.00517488343903478!GO:0004674;protein serine/threonine kinase activity;0.00523049179696172!GO:0035257;nuclear hormone receptor binding;0.00531019341435068!GO:0006505;GPI anchor metabolic process;0.00544336112795166!GO:0046365;monosaccharide catabolic process;0.00544632806478406!GO:0005996;monosaccharide metabolic process;0.0054815027510473!GO:0008180;signalosome;0.00553564618489933!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00563898694757724!GO:0007018;microtubule-based movement;0.00565621820917933!GO:0045449;regulation of transcription;0.00567283826665797!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00582366486437623!GO:0015002;heme-copper terminal oxidase activity;0.00582366486437623!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00582366486437623!GO:0004129;cytochrome-c oxidase activity;0.00582366486437623!GO:0007004;telomere maintenance via telomerase;0.0059491470364556!GO:0006506;GPI anchor biosynthetic process;0.0059732618129068!GO:0005869;dynactin complex;0.00619707774084259!GO:0030131;clathrin adaptor complex;0.0064380176833106!GO:0033116;ER-Golgi intermediate compartment membrane;0.00646339601988562!GO:0000178;exosome (RNase complex);0.00660427589053014!GO:0000082;G1/S transition of mitotic cell cycle;0.00663769674491352!GO:0005663;DNA replication factor C complex;0.00663958196438203!GO:0008022;protein C-terminus binding;0.00683291187749041!GO:0043492;ATPase activity, coupled to movement of substances;0.00688505350010538!GO:0030384;phosphoinositide metabolic process;0.0071327636442304!GO:0043414;biopolymer methylation;0.00730553425088241!GO:0006916;anti-apoptosis;0.00750451946327282!GO:0006730;one-carbon compound metabolic process;0.00750997327472041!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00750997327472041!GO:0016790;thiolester hydrolase activity;0.00752945956815548!GO:0006402;mRNA catabolic process;0.00755136987040374!GO:0016584;nucleosome positioning;0.00764510694716996!GO:0000287;magnesium ion binding;0.00764510694716996!GO:0022406;membrane docking;0.00766217050922392!GO:0048278;vesicle docking;0.00766217050922392!GO:0006401;RNA catabolic process;0.00793100934816241!GO:0040029;regulation of gene expression, epigenetic;0.00794403174385041!GO:0031577;spindle checkpoint;0.00816638760596572!GO:0007021;tubulin folding;0.00829071120084231!GO:0008601;protein phosphatase type 2A regulator activity;0.00829071120084231!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00837697569620999!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00841336576942205!GO:0006096;glycolysis;0.00845921792322715!GO:0005832;chaperonin-containing T-complex;0.00861786742911094!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0086956848806641!GO:0046112;nucleobase biosynthetic process;0.0086956848806641!GO:0008276;protein methyltransferase activity;0.00885716726989743!GO:0019320;hexose catabolic process;0.00899736541981773!GO:0046164;alcohol catabolic process;0.0091183959865004!GO:0008219;cell death;0.00927734017256715!GO:0016265;death;0.00927734017256715!GO:0006541;glutamine metabolic process;0.00953592893528837!GO:0051246;regulation of protein metabolic process;0.00976470544757837!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0102504477608562!GO:0019783;small conjugating protein-specific protease activity;0.0104865663323909!GO:0043069;negative regulation of programmed cell death;0.0106222332242545!GO:0016564;transcription repressor activity;0.0111428183319429!GO:0006497;protein amino acid lipidation;0.0114603888782503!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0116586821989199!GO:0004523;ribonuclease H activity;0.0116586821989199!GO:0043631;RNA polyadenylation;0.0119215118663249!GO:0008652;amino acid biosynthetic process;0.0120701331830983!GO:0006892;post-Golgi vesicle-mediated transport;0.0122734096971975!GO:0004843;ubiquitin-specific protease activity;0.0126091212686305!GO:0044433;cytoplasmic vesicle part;0.0128173389487475!GO:0031902;late endosome membrane;0.0129268525715722!GO:0006278;RNA-dependent DNA replication;0.01296299476522!GO:0043066;negative regulation of apoptosis;0.0129924003796397!GO:0050789;regulation of biological process;0.0133374624731852!GO:0030125;clathrin vesicle coat;0.0136074026839918!GO:0030665;clathrin coated vesicle membrane;0.0136074026839918!GO:0000096;sulfur amino acid metabolic process;0.0140962992483846!GO:0031252;leading edge;0.0141963799269508!GO:0019843;rRNA binding;0.0142586335654034!GO:0003730;mRNA 3'-UTR binding;0.0142605245314385!GO:0006904;vesicle docking during exocytosis;0.0142729206050103!GO:0009303;rRNA transcription;0.0144231790500995!GO:0004221;ubiquitin thiolesterase activity;0.0144764140912991!GO:0008408;3'-5' exonuclease activity;0.0144764140912991!GO:0031570;DNA integrity checkpoint;0.0145631544076032!GO:0043130;ubiquitin binding;0.0145644032664442!GO:0032182;small conjugating protein binding;0.0145644032664442!GO:0035267;NuA4 histone acetyltransferase complex;0.0146225629409536!GO:0016044;membrane organization and biogenesis;0.0148692283088721!GO:0030132;clathrin coat of coated pit;0.0149365497771466!GO:0012506;vesicle membrane;0.0149858234341857!GO:0000152;nuclear ubiquitin ligase complex;0.015010720324028!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0152254505025368!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0152254505025368!GO:0019887;protein kinase regulator activity;0.0155516091082595!GO:0004003;ATP-dependent DNA helicase activity;0.0158183356350934!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.015933587897146!GO:0006220;pyrimidine nucleotide metabolic process;0.0159571332470707!GO:0046483;heterocycle metabolic process;0.0162765341377231!GO:0050178;phenylpyruvate tautomerase activity;0.0163759583509384!GO:0044438;microbody part;0.0164513605877646!GO:0044439;peroxisomal part;0.0164513605877646!GO:0009451;RNA modification;0.0164516493588727!GO:0022411;cellular component disassembly;0.0165816470196753!GO:0006355;regulation of transcription, DNA-dependent;0.0167641898342929!GO:0043022;ribosome binding;0.0169034033604603!GO:0000339;RNA cap binding;0.0173071952523874!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0173807673148212!GO:0010257;NADH dehydrogenase complex assembly;0.0173807673148212!GO:0033108;mitochondrial respiratory chain complex assembly;0.0173807673148212!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0174602016760392!GO:0008536;Ran GTPase binding;0.0177012767284393!GO:0043624;cellular protein complex disassembly;0.0183623329132478!GO:0009124;nucleoside monophosphate biosynthetic process;0.0184356650362129!GO:0009123;nucleoside monophosphate metabolic process;0.0184356650362129!GO:0004532;exoribonuclease activity;0.018810793470716!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.018810793470716!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0188482700942691!GO:0030659;cytoplasmic vesicle membrane;0.0189568953442028!GO:0000930;gamma-tubulin complex;0.0190014295587448!GO:0006376;mRNA splice site selection;0.0196495873107552!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0196495873107552!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0198022217911734!GO:0045039;protein import into mitochondrial inner membrane;0.0198022217911734!GO:0008097;5S rRNA binding;0.0199069481273784!GO:0022884;macromolecule transmembrane transporter activity;0.0199069481273784!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0199069481273784!GO:0016563;transcription activator activity;0.020064041420474!GO:0000118;histone deacetylase complex;0.0203477633836761!GO:0005769;early endosome;0.0203477633836761!GO:0006275;regulation of DNA replication;0.0209945208182108!GO:0043189;H4/H2A histone acetyltransferase complex;0.021160528205602!GO:0043154;negative regulation of caspase activity;0.0217641146603198!GO:0051287;NAD binding;0.0218003778474139!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0220458399657385!GO:0031903;microbody membrane;0.0223063816441267!GO:0005778;peroxisomal membrane;0.0223063816441267!GO:0000781;chromosome, telomeric region;0.022465209516029!GO:0005652;nuclear lamina;0.0226449558101357!GO:0046128;purine ribonucleoside metabolic process;0.0227245495303204!GO:0042278;purine nucleoside metabolic process;0.0227245495303204!GO:0043433;negative regulation of transcription factor activity;0.0232972981510684!GO:0051252;regulation of RNA metabolic process;0.0233180584435446!GO:0019206;nucleoside kinase activity;0.0237079110298658!GO:0033170;DNA-protein loading ATPase activity;0.0238184709847406!GO:0003689;DNA clamp loader activity;0.0238184709847406!GO:0007050;cell cycle arrest;0.0240421819403555!GO:0000159;protein phosphatase type 2A complex;0.0241835787254797!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0244502251435712!GO:0000086;G2/M transition of mitotic cell cycle;0.0247213692184183!GO:0042769;DNA damage response, detection of DNA damage;0.0248701445974674!GO:0001832;blastocyst growth;0.0251691375721162!GO:0030508;thiol-disulfide exchange intermediate activity;0.0253376335313876!GO:0003887;DNA-directed DNA polymerase activity;0.025338236184935!GO:0032984;macromolecular complex disassembly;0.0257564426112178!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0259484114195873!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0259484114195873!GO:0004448;isocitrate dehydrogenase activity;0.0259484114195873!GO:0003923;GPI-anchor transamidase activity;0.0263080446974047!GO:0016255;attachment of GPI anchor to protein;0.0263080446974047!GO:0042765;GPI-anchor transamidase complex;0.0263080446974047!GO:0000790;nuclear chromatin;0.0267476320660225!GO:0006354;RNA elongation;0.0269119186170308!GO:0006367;transcription initiation from RNA polymerase II promoter;0.027045915375857!GO:0000209;protein polyubiquitination;0.0272421804588178!GO:0008637;apoptotic mitochondrial changes;0.0284064098883633!GO:0042158;lipoprotein biosynthetic process;0.0284452579412986!GO:0003756;protein disulfide isomerase activity;0.0284593668708774!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0284593668708774!GO:0030027;lamellipodium;0.0293250624865695!GO:0042770;DNA damage response, signal transduction;0.0293488188237054!GO:0030496;midbody;0.0294281369092964!GO:0008320;protein transmembrane transporter activity;0.0294715967801506!GO:0006066;alcohol metabolic process;0.0297990204166487!GO:0008213;protein amino acid alkylation;0.0306657009697249!GO:0006479;protein amino acid methylation;0.0306657009697249!GO:0006643;membrane lipid metabolic process;0.0311934404233238!GO:0006301;postreplication repair;0.0319608794766424!GO:0045947;negative regulation of translational initiation;0.0320426763197103!GO:0016585;chromatin remodeling complex;0.0322820958421701!GO:0030911;TPR domain binding;0.0325396431763204!GO:0000726;non-recombinational repair;0.0328452463933265!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0328696069504102!GO:0030262;apoptotic nuclear changes;0.0328834889045248!GO:0032404;mismatch repair complex binding;0.033036800081739!GO:0005784;translocon complex;0.0333311896962352!GO:0006400;tRNA modification;0.0333311896962352!GO:0003702;RNA polymerase II transcription factor activity;0.0336659696295431!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0338812877371046!GO:0043241;protein complex disassembly;0.0339940160966916!GO:0000793;condensed chromosome;0.0341432247343187!GO:0009113;purine base biosynthetic process;0.0348925475037015!GO:0005658;alpha DNA polymerase:primase complex;0.0350066257265417!GO:0030127;COPII vesicle coat;0.0353374984316057!GO:0012507;ER to Golgi transport vesicle membrane;0.0353374984316057!GO:0006406;mRNA export from nucleus;0.0353374984316057!GO:0019207;kinase regulator activity;0.035559757149349!GO:0031371;ubiquitin conjugating enzyme complex;0.0358378029008891!GO:0000097;sulfur amino acid biosynthetic process;0.0358378029008891!GO:0009262;deoxyribonucleotide metabolic process;0.0359023358466231!GO:0030134;ER to Golgi transport vesicle;0.0365269000892467!GO:0008538;proteasome activator activity;0.0366743019356345!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0366743019356345!GO:0055083;monovalent inorganic anion homeostasis;0.0366743019356345!GO:0055064;chloride ion homeostasis;0.0366743019356345!GO:0030644;cellular chloride ion homeostasis;0.0366743019356345!GO:0032039;integrator complex;0.0369863414589005!GO:0004347;glucose-6-phosphate isomerase activity;0.0382503425690023!GO:0051297;centrosome organization and biogenesis;0.0383852413755905!GO:0031023;microtubule organizing center organization and biogenesis;0.0383852413755905!GO:0016835;carbon-oxygen lyase activity;0.0389749640380219!GO:0016311;dephosphorylation;0.0390126572875778!GO:0006006;glucose metabolic process;0.0392130217141566!GO:0009161;ribonucleoside monophosphate metabolic process;0.0393770951179881!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0393770951179881!GO:0004860;protein kinase inhibitor activity;0.0406207197476738!GO:0000070;mitotic sister chromatid segregation;0.0407389819366987!GO:0030521;androgen receptor signaling pathway;0.0421771936491744!GO:0005680;anaphase-promoting complex;0.0422213484211477!GO:0000819;sister chromatid segregation;0.0425099242556733!GO:0050662;coenzyme binding;0.0435638608281962!GO:0007019;microtubule depolymerization;0.0438647537157106!GO:0031301;integral to organelle membrane;0.0443552002735839!GO:0005666;DNA-directed RNA polymerase III complex;0.0446237340932293!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0446774759397154!GO:0015036;disulfide oxidoreductase activity;0.0467305839975186!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0473744950309141!GO:0008409;5'-3' exonuclease activity;0.0478596828808627!GO:0017134;fibroblast growth factor binding;0.0493581157592539!GO:0006298;mismatch repair;0.0497202292506732!GO:0045005;maintenance of fidelity during DNA-dependent DNA replication;0.0497202292506732!GO:0016407;acetyltransferase activity;0.049911698300173
|sample_id=10703
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=FOXP1:3.51075042774;NANOG:2.78771890799;PITX1..3:2.73908825505;POU6F1:2.59339228301;POU1F1:2.38212906821;NFY{A,B,C}:2.28673729708;BREu{core}:2.27684351403;NKX2-1,4:2.02967657687;TOPORS:1.922673575;PAX3,7:1.84122859773;ADNP_IRX_SIX_ZHX:1.83973675759;E2F1..5:1.82410449259;AIRE:1.67259244507;NRF1:1.6275558167;PAX8:1.61562500973;HOX{A4,D4}:1.53252275505;LHX3,4:1.50207014183;NKX6-1,2:1.48667983722;RBPJ:1.46859048276;LMO2:1.46198625913;ZNF143:1.4230544757;TFDP1:1.41657541241;PRRX1,2:1.41556210235;PBX1:1.37975643095;HOX{A6,A7,B6,B7}:1.31995675497;DBP:1.27892676322;ZBTB16:1.25530780861;FOXQ1:1.22006856581;IKZF2:1.1563197762;EVI1:1.1558426975;SOX{8,9,10}:1.14147742535;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.12778714631;NKX2-3_NKX2-5:1.11113776786;AHR_ARNT_ARNT2:1.10223543033;PAX4:1.02339255127;GFI1:0.981399841839;CDX1,2,4:0.959372904234;MYOD1:0.944370712003;POU2F1..3:0.944228169015;PAX6:0.931720004447;RFX1:0.868439635102;XCPE1{core}:0.861503936134;FOXA2:0.848271701536;OCT4_SOX2{dimer}:0.835426824861;TEF:0.795984112892;YY1:0.762060664386;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.751303524671;SNAI1..3:0.738705434487;SOX17:0.72656766538;ZFP161:0.726068586475;FOXM1:0.698069326212;TGIF1:0.670863069016;ATF4:0.631785188629;ELK1,4_GABP{A,B1}:0.606229163677;POU5F1:0.576392344732;GFI1B:0.516547557136;SP1:0.513126100252;RFX2..5_RFXANK_RFXAP:0.500403720161;REST:0.499276485725;ALX1:0.478738714994;NKX3-1:0.451068885336;CUX2:0.450781356315;ONECUT1,2:0.449696321539;STAT5{A,B}:0.442507139873;MYB:0.435180289224;HOXA9_MEIS1:0.38728458207;ARID5B:0.376453794333;ZNF423:0.364100500064;bHLH_family:0.356259695952;ATF5_CREB3:0.351436137967;FOXD3:0.348380059881;LEF1_TCF7_TCF7L1,2:0.331272920113;RREB1:0.321188069634;POU3F1..4:0.315783499525;PDX1:0.283231737367;HAND1,2:0.255312864598;ATF2:0.255129605531;ZEB1:0.246953828795;VSX1,2:0.222173515024;HOX{A5,B5}:0.219587107654;FOXP3:0.179889430467;PPARG:0.154073790802;SOX5:0.153254008431;EBF1:0.149049133599;JUN:0.147902018097;FOXL1:0.14533828879;PAX5:0.1178706866;NHLH1,2:0.10865628205;GATA6:0.0944043639844;MEF2{A,B,C,D}:0.0878886071445;HMGA1,2:0.0673050360433;CRX:0.0584535259192;ZIC1..3:0.0517110287012;STAT1,3:0.0305981214036;HIC1:-0.0287333850512;EGR1..3:-0.0529881046816;TLX1..3_NFIC{dimer}:-0.0552639491372;ZBTB6:-0.0634679682947;RORA:-0.0670318606138;TFAP2B:-0.0782416874618;ATF6:-0.0912348729638;CREB1:-0.0990468386208;KLF4:-0.101312241026;FOX{F1,F2,J1}:-0.116028240814;MED-1{core}:-0.124390947383;FOXN1:-0.131126922186;NKX2-2,8:-0.151221234807;MTE{core}:-0.155087535358;NR5A1,2:-0.176177917687;PATZ1:-0.184599974005;NR6A1:-0.184713671735;ZNF384:-0.187145927198;PAX1,9:-0.197901839904;GATA4:-0.222096256972;IKZF1:-0.223327382033;HES1:-0.241952471703;NFE2L1:-0.270368524448;BPTF:-0.273810947175;UFEwm:-0.301061987487;ESRRA:-0.306615187345;TP53:-0.316084105774;HNF1A:-0.335234893661;TAL1_TCF{3,4,12}:-0.374923868638;MYFfamily:-0.400187589593;NR1H4:-0.449866483923;EN1,2:-0.496876803851;AR:-0.500284537631;ZNF238:-0.509560222038;DMAP1_NCOR{1,2}_SMARC:-0.528748305615;NFE2L2:-0.548985725067;FOX{I1,J2}:-0.559809247246;GTF2I:-0.560688468281;FOSL2:-0.608964271749;SREBF1,2:-0.611914312172;MTF1:-0.622527128937;MYBL2:-0.624341087605;NFE2:-0.63728301887;PAX2:-0.644409710125;HSF1,2:-0.676814994695;HNF4A_NR2F1,2:-0.696765410858;RUNX1..3:-0.697789596427;ELF1,2,4:-0.705066824187;BACH2:-0.714774551219;NFIL3:-0.717295411658;NFIX:-0.719973125628;SOX2:-0.721408433812;PRDM1:-0.728807943738;CEBPA,B_DDIT3:-0.728847840357;CDC5L:-0.734992736638;RXRA_VDR{dimer}:-0.741235876962;NFKB1_REL_RELA:-0.764545376547;FOS_FOS{B,L1}_JUN{B,D}:-0.779131304444;XBP1:-0.77943140164;HBP1_HMGB_SSRP1_UBTF:-0.790267981776;TBP:-0.792447686417;NKX3-2:-0.811215453782;GCM1,2:-0.85794670088;SMAD1..7,9:-0.884222997482;NR3C1:-0.901365476219;FOX{D1,D2}:-0.908441811406;HLF:-0.912668882801;HIF1A:-0.938330561171;SPIB:-0.94902078138;SPI1:-0.967445059662;T:-0.996386057246;TFAP2{A,C}:-1.0038713521;MAZ:-1.00761372507;MZF1:-1.01025001479;GZF1:-1.08269175148;ESR1:-1.10616583967;TBX4,5:-1.14715129826;IRF7:-1.22371539531;ETS1,2:-1.26223633271;TFCP2:-1.28762225862;ALX4:-1.29328140454;TEAD1:-1.29429388008;ZNF148:-1.32593870048;NANOG{mouse}:-1.32627406238;FOXO1,3,4:-1.33313172032;NFATC1..3:-1.34335735649;GTF2A1,2:-1.35457601007;STAT2,4,6:-1.38822627082;SPZ1:-1.41008736489;TLX2:-1.42033142771;RXR{A,B,G}:-1.44981538955;MAFB:-1.50054633543;IRF1,2:-1.50712813112;TFAP4:-1.63785296042;EP300:-1.71787553025;HMX1:-1.92372185339;SRF:-1.92793162544;GLI1..3:-1.97055896921
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10703-109H1;search_select_hide=table117:FF:10703-109H1
}}
}}

Latest revision as of 14:34, 3 June 2020

Name:carcinoid cell line:NCI-H1770
Species:Human (Homo sapiens)
Library ID:CNhs11834
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age57
cell typeneuroendocrine cell
cell lineNCI-H1770
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005215
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11834 CAGE DRX007842 DRR008714
Accession ID Hg19

Library idBAMCTSS
CNhs11834 DRZ000139 DRZ001524
Accession ID Hg38

Library idBAMCTSS
CNhs11834 DRZ011489 DRZ012874
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.152
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.572
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0.129
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0256
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0712
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.186
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0711
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.00903
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.129
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.391
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.129
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.129
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.596
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.361
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11834

Jaspar motifP-value
MA0002.21.93616e-6
MA0003.10.236
MA0004.10.473
MA0006.10.0879
MA0007.10.35
MA0009.10.627
MA0014.10.277
MA0017.10.00558
MA0018.20.0134
MA0019.10.0714
MA0024.13.65904e-8
MA0025.10.3
MA0027.10.783
MA0028.10.18
MA0029.10.905
MA0030.10.229
MA0031.10.019
MA0035.20.73
MA0038.10.00445
MA0039.20.156
MA0040.10.232
MA0041.10.346
MA0042.10.439
MA0043.10.306
MA0046.10.0215
MA0047.20.0172
MA0048.10.598
MA0050.11.67041e-8
MA0051.11.94884e-5
MA0052.10.204
MA0055.10.0596
MA0057.10.307
MA0058.10.444
MA0059.10.233
MA0060.12.05055e-16
MA0061.10.00419
MA0062.20.584
MA0065.20.0726
MA0066.10.478
MA0067.10.624
MA0068.10.57
MA0069.10.93
MA0070.10.484
MA0071.10.686
MA0072.10.664
MA0073.10.0542
MA0074.10.306
MA0076.10.0682
MA0077.10.129
MA0078.10.704
MA0079.20.232
MA0080.21.42507e-10
MA0081.10.00849
MA0083.14.26304e-5
MA0084.10.386
MA0087.10.409
MA0088.10.0951
MA0090.10.00689
MA0091.10.576
MA0092.10.184
MA0093.10.437
MA0099.26.47075e-16
MA0100.10.133
MA0101.10.00266
MA0102.20.00489
MA0103.10.0315
MA0104.20.0176
MA0105.10.0141
MA0106.10.497
MA0107.12.57504e-4
MA0108.20.0752
MA0111.10.749
MA0112.20.00413
MA0113.10.0832
MA0114.10.142
MA0115.10.29
MA0116.10.0614
MA0117.10.645
MA0119.10.706
MA0122.10.309
MA0124.10.372
MA0125.10.45
MA0131.10.341
MA0135.10.463
MA0136.13.04869e-9
MA0137.20.00521
MA0138.20.238
MA0139.10.411
MA0140.10.571
MA0141.10.188
MA0142.10.643
MA0143.10.186
MA0144.11.67769e-4
MA0145.10.0581
MA0146.10.218
MA0147.10.0329
MA0148.10.0942
MA0149.10.766
MA0150.10.00132
MA0152.10.718
MA0153.10.012
MA0154.10.117
MA0155.10.165
MA0156.11.36352e-6
MA0157.10.0363
MA0159.10.105
MA0160.10.126
MA0162.10.299
MA0163.10.00741
MA0164.10.864
MA0258.10.274
MA0259.10.0335



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11834

Novel motifP-value
10.902
100.29
1000.196
1010.823
1020.531
1030.0445
1040.507
1050.781
1061.97329e-4
1070.0166
1080.799
1090.399
110.657
1100.772
1110.911
1120.106
1130.672
1140.227
1150.98
1160.892
1170.543
1180.845
1190.425
120.62
1200.135
1210.465
1220.783
1232.41649e-4
1240.477
1250.883
1260.194
1270.252
1280.0378
1290.607
130.726
1300.529
1310.623
1320.805
1330.0994
1340.907
1350.257
1360.796
1370.167
1380.53
1390.905
140.478
1400.272
1410.438
1420.933
1430.108
1440.573
1450.776
1460.721
1470.996
1480.0702
1490.163
150.438
1500.181
1510.386
1520.00901
1530.552
1540.503
1550.591
1560.694
1570.306
1580.868
1590.46
160.135
1600.372
1610.911
1620.434
1630.126
1640.263
1650.402
1660.996
1670.693
1680.032
1690.0654
170.191
180.22
190.134
20.163
200.385
210.527
220.0567
230.0101
240.155
250.859
260.518
270.078
280.765
290.486
30.349
300.155
310.289
320.00366
330.44
340.276
350.606
360.249
370.0693
380.77
390.314
40.306
400.143
410.0885
420.805
430.146
440.415
450.246
460.432
470.685
480.898
490.859
50.301
500.46
510.284
520.103
530.434
540.208
550.0753
560.662
570.356
580.194
590.0649
60.643
600.0111
610.485
620.0407
630.686
640.537
650.3
660.0735
670.588
680.905
690.889
70.536
700.154
710.167
720.0914
730.0141
740.455
750.236
760.963
770.2
780.572
790.15
80.436
800.0602
810.516
820.528
830.239
840.481
850.00843
860.0945
870.292
880.765
890.0249
90.0279
900.981
910.354
920.145
930.396
940.358
950.35
960.829
970.851
980.713
990.864



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11834


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3119 (gastrointestinal system cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0101533 (gastrointestinal cancer cell sample)
0100460 (fibrosarcoma cell line sample)
0100729 (carcinoid cell sample)
0103764 (NCI cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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