FF:10706-109H4: Difference between revisions

Latest revision as of 14:34, 3 June 2020

Name:	pleomorphic hepatocellular carcinoma cell line:SNU-387
Species:	Human (Homo sapiens)
Library ID:	CNhs11933
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	female
age	41
cell type	hepatocyte
cell line	SNU-387
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005502

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11933		CAGE		DRX007986		DRR008858

Accession ID Hg19

Library id		BAM		CTSS
CNhs11933		DRZ000283		DRZ001668

Accession ID Hg38

Library id		BAM		CTSS
CNhs11933		DRZ011633		DRZ013018

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0358
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.323
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.269
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0839
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0215
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0687
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.128
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0217
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0294
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0687
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.246
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0687
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0687
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0687
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0687
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0596
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0625
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.151
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.686
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.573
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.18
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0687
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.502
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11933

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.401
MA0003.1	MA0003.1	0.423
MA0004.1	MA0004.1	0.00423
MA0006.1	MA0006.1	0.25
MA0007.1	MA0007.1	0.952
MA0009.1	MA0009.1	0.705
MA0014.1	MA0014.1	0.175
MA0017.1	MA0017.1	0.336
MA0018.2	MA0018.2	0.374
MA0019.1	MA0019.1	0.385
MA0024.1	MA0024.1	0.0854
MA0025.1	MA0025.1	0.679
MA0027.1	MA0027.1	0.489
MA0028.1	MA0028.1	0.427
MA0029.1	MA0029.1	0.297
MA0030.1	MA0030.1	0.0942
MA0031.1	MA0031.1	4.2151e-5
MA0035.2	MA0035.2	0.0186
MA0038.1	MA0038.1	0.211
MA0039.2	MA0039.2	0.221
MA0040.1	MA0040.1	0.812
MA0041.1	MA0041.1	0.648
MA0042.1	MA0042.1	0.769
MA0043.1	MA0043.1	0.801
MA0046.1	MA0046.1	0.768
MA0047.2	MA0047.2	0.00967
MA0048.1	MA0048.1	0.386
MA0050.1	MA0050.1	0.0105
MA0051.1	MA0051.1	0.0092
MA0052.1	MA0052.1	0.0999
MA0055.1	MA0055.1	0.229
MA0057.1	MA0057.1	0.192
MA0058.1	MA0058.1	4.54691e-4
MA0059.1	MA0059.1	3.49286e-4
MA0060.1	MA0060.1	0.0478
MA0061.1	MA0061.1	0.213
MA0062.2	MA0062.2	0.023
MA0065.2	MA0065.2	0.275
MA0066.1	MA0066.1	0.59
MA0067.1	MA0067.1	0.631
MA0068.1	MA0068.1	0.519
MA0069.1	MA0069.1	0.814
MA0070.1	MA0070.1	0.559
MA0071.1	MA0071.1	0.399
MA0072.1	MA0072.1	0.276
MA0073.1	MA0073.1	0.497
MA0074.1	MA0074.1	0.659
MA0076.1	MA0076.1	0.28
MA0077.1	MA0077.1	0.00451
MA0078.1	MA0078.1	0.65
MA0079.2	MA0079.2	0.119
MA0080.2	MA0080.2	1.16455e-6
MA0081.1	MA0081.1	0.0196
MA0083.1	MA0083.1	0.722
MA0084.1	MA0084.1	0.0292
MA0087.1	MA0087.1	0.0184
MA0088.1	MA0088.1	0.229
MA0090.1	MA0090.1	0.00515
MA0091.1	MA0091.1	0.828
MA0092.1	MA0092.1	0.224
MA0093.1	MA0093.1	0.00246
MA0099.2	MA0099.2	1.08544e-7
MA0100.1	MA0100.1	0.0153
MA0101.1	MA0101.1	0.958
MA0102.2	MA0102.2	0.479
MA0103.1	MA0103.1	2.21077e-4
MA0104.2	MA0104.2	0.0018
MA0105.1	MA0105.1	0.0842
MA0106.1	MA0106.1	0.593
MA0107.1	MA0107.1	0.841
MA0108.2	MA0108.2	0.0141
MA0111.1	MA0111.1	0.676
MA0112.2	MA0112.2	0.0464
MA0113.1	MA0113.1	0.509
MA0114.1	MA0114.1	0.761
MA0115.1	MA0115.1	0.237
MA0116.1	MA0116.1	0.0206
MA0117.1	MA0117.1	0.206
MA0119.1	MA0119.1	0.0157
MA0122.1	MA0122.1	0.3
MA0124.1	MA0124.1	0.209
MA0125.1	MA0125.1	0.995
MA0131.1	MA0131.1	0.534
MA0135.1	MA0135.1	0.0232
MA0136.1	MA0136.1	4.41268e-4
MA0137.2	MA0137.2	0.774
MA0138.2	MA0138.2	0.702
MA0139.1	MA0139.1	0.467
MA0140.1	MA0140.1	0.548
MA0141.1	MA0141.1	0.118
MA0142.1	MA0142.1	0.98
MA0143.1	MA0143.1	0.165
MA0144.1	MA0144.1	0.481
MA0145.1	MA0145.1	0.904
MA0146.1	MA0146.1	0.366
MA0147.1	MA0147.1	1.03566e-4
MA0148.1	MA0148.1	0.0218
MA0149.1	MA0149.1	0.579
MA0150.1	MA0150.1	0.0205
MA0152.1	MA0152.1	4.8391e-4
MA0153.1	MA0153.1	0.0839
MA0154.1	MA0154.1	0.00751
MA0155.1	MA0155.1	0.171
MA0156.1	MA0156.1	0.0752
MA0157.1	MA0157.1	6.53683e-4
MA0159.1	MA0159.1	0.248
MA0160.1	MA0160.1	0.266
MA0162.1	MA0162.1	0.248
MA0163.1	MA0163.1	0.00414
MA0164.1	MA0164.1	0.956
MA0258.1	MA0258.1	0.46
MA0259.1	MA0259.1	0.0366

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11933

Novel motif	Logo	P-value
1	1	0.858
10	10	0.117
100	100	0.238
101	101	0.58
102	102	0.363
103	103	0.259
104	104	0.72
105	105	0.404
106	106	0.253
107	107	0.315
108	108	0.139
109	109	0.887
11	11	0.364
110	110	0.854
111	111	0.456
112	112	0.108
113	113	0.172
114	114	0.149
115	115	0.442
116	116	0.642
117	117	0.646
118	118	0.774
119	119	0.839
12	12	0.418
120	120	0.684
121	121	0.276
122	122	0.228
123	123	0.566
124	124	0.112
125	125	0.718
126	126	0.162
127	127	0.643
128	128	0.4
129	129	0.92
13	13	0.491
130	130	0.345
131	131	0.809
132	132	0.455
133	133	0.339
134	134	0.415
135	135	0.341
136	136	0.243
137	137	0.453
138	138	0.817
139	139	0.139
14	14	0.522
140	140	0.0657
141	141	0.721
142	142	0.51
143	143	0.299
144	144	0.848
145	145	0.197
146	146	0.536
147	147	0.887
148	148	0.195
149	149	0.924
15	15	0.0347
150	150	0.311
151	151	0.917
152	152	0.656
153	153	0.275
154	154	0.411
155	155	0.236
156	156	0.813
157	157	0.171
158	158	0.0831
159	159	0.523
16	16	0.812
160	160	0.37
161	161	0.182
162	162	0.763
163	163	0.175
164	164	0.437
165	165	0.179
166	166	0.309
167	167	0.531
168	168	0.244
169	169	0.572
17	17	0.0832
18	18	0.0752
19	19	0.318
2	2	0.344
20	20	0.287
21	21	0.0899
22	22	0.992
23	23	0.381
24	24	0.46
25	25	0.179
26	26	0.679
27	27	0.431
28	28	0.177
29	29	0.402
3	3	0.62
30	30	0.453
31	31	0.729
32	32	0.11
33	33	0.997
34	34	0.177
35	35	0.0957
36	36	0.439
37	37	0.143
38	38	0.271
39	39	0.923
4	4	0.467
40	40	0.0725
41	41	0.295
42	42	0.447
43	43	0.535
44	44	0.166
45	45	0.323
46	46	0.299
47	47	0.182
48	48	0.619
49	49	0.462
5	5	0.0291
50	50	0.946
51	51	0.234
52	52	0.824
53	53	0.475
54	54	0.915
55	55	0.0561
56	56	0.999
57	57	0.812
58	58	0.437
59	59	0.233
6	6	0.662
60	60	0.784
61	61	0.467
62	62	0.441
63	63	0.869
64	64	0.872
65	65	0.263
66	66	0.0637
67	67	0.506
68	68	0.16
69	69	0.197
7	7	0.829
70	70	0.0573
71	71	0.599
72	72	0.172
73	73	0.834
74	74	0.223
75	75	0.361
76	76	0.511
77	77	0.743
78	78	0.324
79	79	0.963
8	8	0.637
80	80	0.795
81	81	0.101
82	82	0.231
83	83	0.481
84	84	0.486
85	85	0.705
86	86	0.706
87	87	0.225
88	88	0.881
89	89	0.133
9	9	0.697
90	90	0.653
91	91	0.307
92	92	0.599
93	93	0.398
94	94	0.11
95	95	0.00204
96	96	0.742
97	97	0.203
98	98	0.00389
99	99	0.528

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11933

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:5662 pleomorphic carcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103191 SNU-387 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
5662 (pleomorphic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0103191 (SNU-387 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005502
+|accession_numbers=CAGE;DRX007986;DRR008858;DRZ000283;DRZ001668;DRZ011633;DRZ013018
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:189349162..189349207,+!p2@TP63!1.76!56.93!TP63;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!32.93!ZBED1;;chr6:45296048..45296082,+!p1@RUNX2!1.45!31.21!RUNX2;;chr20:30433396..30433414,-!p1@FOXS1!1.30!18.86!FOXS1;;chrX:66763856..66763896,+!p1@AR!1.23!22.98!AR;;chr20:42543441..42543497,+!p1@TOX2!1.22!69.11!TOX2;;chr1:151804244..151804310,-!p1@RORC!1.21!15.09!RORC;;chr3:21792585..21792625,-!p2@ZNF385D!1.20!16.46!ZNF385D;;chr3:114343768..114343822,-!p1@ZBTB20!1.18!61.22!ZBTB20;;chr3:189348969..189349018,+!p4@TP63!1.16!13.38!TP63;;chr17:70117153..70117174,+!p1@SOX9!1.14!132.05!SOX9;;chr1:119530493..119530572,-!p1@TBX15!1.14!12.86!TBX15;;chr20:42543506..42543549,+!p2@TOX2!1.12!29.67!TOX2;;chr3:141087339..141087387,+!p2@ZBTB38!1.10!117.81!ZBTB38;;chr4:111558135..111558198,-!p2@PITX2!1.10!11.66!PITX2;;chr5:134369905..134369972,-!p1@PITX1!1.08!17.15!PITX1;;chr12:66218598..66218645,+!p2@HMGA2!1.07!50.59!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!1.05!27.10!NCOA7;;chr2:176969228..176969260,+!p1@HOXD11!1.05!10.12!HOXD11;;chr12:66218836..66218888,+!p1@HMGA2!1.03!91.57!HMGA2;;chr9:14180778..14180808,-!p15@NFIB!1.03!9.77!NFIB;;chr3:193853927..193853944,+!p1@HES1!1.02!313.82!HES1;;chr3:114343826..114343869,-!p4@ZBTB20!1.01!18.86!ZBTB20;;chr12:26277817..26277863,-!p2@BHLHE41!1.01!12.52!BHLHE41;;chr3:21792682..21792720,-!p1@ZNF385D!1.00!8.92!ZNF385D;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.26!EBF1;;chr19:45971246..45971265,+!p1@FOSB!0.96!157.25!FOSB;;chr3:141087393..141087426,+!p3@ZBTB38!0.96!33.27!ZBTB38;;chr20:50179368..50179392,-!p2@NFATC2!0.96!10.63!NFATC2;;chr7:14028488..14028516,-!p2@ETV1!0.96!8.92!ETV1;;chr14:75745523..75745537,+!p1@FOS!0.94!965.48!FOS;;chr1:158969752..158969780,+!p6@IFI16!0.94!13.55!IFI16;;chr6:28321971..28321995,-!p1@ZNF323!0.94!7.72!ZNF323;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.61!BHLHE41;;chr17:38256799..38256815,-!p3@NR1D1!0.92!13.72!NR1D1;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.52!TFAP2A;;chr3:157823517..157823562,-!p1@SHOX2!0.91!7.72!SHOX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.90!35.67!NFE2L3;;chr7:17338266..17338282,+!p1@AHR!0.89!77.34!AHR;;chr2:178128149..178128198,-!p2@NFE2L2!0.89!38.41!NFE2L2;;chr12:66218255..66218304,+!p3@HMGA2!0.89!19.04!HMGA2;;chr5:124082322..124082364,-!p1@ZNF608!0.89!18.01!ZNF608;;chr3:5021268..5021282,+!p4@BHLHE40!0.89!14.40!BHLHE40;;chr17:38256822..38256851,-!p1@NR1D1!0.88!54.88!NR1D1;;chr8:116681409..116681431,-!p2@TRPS1!0.88!19.04!TRPS1;;chrX:66763815..66763854,+!p2@AR!0.87!8.57!AR;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.40!NCOR2;;chr10:63809013..63809041,+!p3@ARID5B!0.86!36.36!ARID5B;;chr7:14029283..14029311,-!p1@ETV1!0.86!35.16!ETV1;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.16!FOXP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.83!31.90!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!0.83!7.37!FOXF1;;chr12:77459306..77459365,-!p1@E2F7!0.82!74.94!E2F7;;chr19:13134772..13134822,+!p2@NFIX!0.82!8.40!NFIX;;chr9:16728327..16728338,-!p5@BNC2!0.82!5.66!BNC2;;chr6:35310395..35310410,+!p2@PPARD!0.81!22.64!PPARD;;chr5:124084493..124084524,-!p2@ZNF608!0.80!12.69!ZNF608;;chr9:16728161..16728185,-!p4@BNC2!0.80!5.32!BNC2;;chr15:80843484..80843499,+!p5@ARNT2!0.80!5.32!ARNT2;;chr2:101436564..101436647,+!p1@NPAS2!0.79!114.55!NPAS2;;chr3:5021191..5021202,+!p3@BHLHE40!0.79!14.75!BHLHE40;;chr17:17726907..17726958,-!p2@SREBF1!0.78!34.13!SREBF1;;chr9:16705069..16705086,-!p3@BNC2!0.78!4.97!BNC2;;chr8:11561684..11561751,+!p1@GATA4!0.78!4.97!GATA4;;chr11:66886717..66886762,+!p1@KDM2A!0.76!108.55!KDM2A;;chr14:62162258..62162269,+!p2@HIF1A!0.76!50.59!HIF1A;;chr21:47063625..47063658,+!p1@PCBP3!0.76!22.64!PCBP3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.12!ETV4;;chr17:53342311..53342400,+!p1@HLF!0.76!5.49!HLF;;chr6:10412392..10412409,-!p4@TFAP2A!0.76!5.49!TFAP2A;;chr3:21792631..21792665,-!p3@ZNF385D!0.76!4.80!ZNF385D;;chr2:46524897..46524911,+!p2@EPAS1!0.75!13.89!EPAS1;;chr2:231090433..231090469,+!p1@SP140!0.75!4.63!SP140;;chr16:67198683..67198698,+!p2@HSF4!0.75!4.63!HSF4;;chr1:158979686..158979745,+!p1@IFI16!0.74!166.69!IFI16;;chr6:168227552..168227609,+!p1@MLLT4!0.74!40.99!MLLT4;;chr6:45390025..45390076,+!p2@RUNX2!0.74!11.66!RUNX2;;chr2:157189180..157189290,-!p1@NR4A2!0.73!25.04!NR4A2;;chr16:79633894..79633954,-!p3@MAF!0.73!8.92!MAF;;chr6:126240442..126240459,+!p4@NCOA7!0.73!5.83!NCOA7;;chr16:79634624..79634642,-!p1@MAF!0.72!18.52!MAF;;chr12:66218212..66218244,+!p5@HMGA2!0.72!6.52!HMGA2;;chr12:26277929..26277955,-!p3@BHLHE41!0.72!6.35!BHLHE41;;chr5:176738887..176738934,-!p1@MXD3!0.71!31.04!MXD3;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.18!HIF1A;;chr17:56065729..56065781,-!p2@VEZF1!0.71!19.89!VEZF1;;chr3:114866084..114866118,-!p2@ZBTB20!0.71!16.81!ZBTB20;;chr9:14314522..14314556,-!p3@NFIB!0.71!10.46!NFIB;;chr8:116681194..116681214,-!p1@TRPS1!0.70!42.87!TRPS1;;chr1:158979872..158979898,+!p3@IFI16!0.70!13.72!IFI16;;chr6:45389835..45389861,+!p7@RUNX2!0.70!6.86!RUNX2;;chr1:41827095..41827155,+!p1@FOXO6!0.70!5.66!FOXO6;;chr1:8938709..893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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10706-109H4
 |is_a=DOID:5662;;EFO:0002091;;FF:0000210;;FF:0103191
 |is_obsolete=
+|library_id=CNhs11933
+|library_id_phase_based=2:CNhs11933
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10706
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10706
 |name=pleomorphic hepatocellular carcinoma cell line:SNU-387
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11933,LSID835,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=109
@@ Line 62: / Line 78: @@
 |rna_weight_ug=8.85546
 |sample_age=41
+|sample_category=cell lines
 |sample_cell_catalog=CRL-2237
 |sample_cell_line=SNU-387
@@ Line 83: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10706-109H4;search_select_hide=table117:FF:10706-109H4
 }}

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FF:10706-109H4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:34, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0