FF:10717-109I6: Difference between revisions

Latest revision as of 15:01, 3 June 2020

Name:	acantholytic squamous carcinoma cell line:HCC1806
Species:	Human (Homo sapiens)
Library ID:	CNhs11844
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	breast
dev stage	NA
sex	female
age	60
cell type	unclassifiable
cell line	HCC1806
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005858

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11844		CAGE		DRX007796		DRR008668

Accession ID Hg19

Library id		BAM		CTSS
CNhs11844		DRZ000093		DRZ001478

Accession ID Hg38

Library id		BAM		CTSS
CNhs11844		DRZ011443		DRZ012828

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.224
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0248
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0952
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.164
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.347
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.166
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0952
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.752
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.671
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.588
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0952
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11844

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00169
MA0003.1	MA0003.1	0.378
MA0004.1	MA0004.1	0.454
MA0006.1	MA0006.1	0.58
MA0007.1	MA0007.1	0.941
MA0009.1	MA0009.1	0.374
MA0014.1	MA0014.1	0.0455
MA0017.1	MA0017.1	0.243
MA0018.2	MA0018.2	0.368
MA0019.1	MA0019.1	0.347
MA0024.1	MA0024.1	7.38702e-8
MA0025.1	MA0025.1	0.436
MA0027.1	MA0027.1	0.607
MA0028.1	MA0028.1	0.41
MA0029.1	MA0029.1	0.664
MA0030.1	MA0030.1	0.869
MA0031.1	MA0031.1	0.785
MA0035.2	MA0035.2	0.508
MA0038.1	MA0038.1	7.97382e-5
MA0039.2	MA0039.2	1.64592e-4
MA0040.1	MA0040.1	0.149
MA0041.1	MA0041.1	0.235
MA0042.1	MA0042.1	0.323
MA0043.1	MA0043.1	0.435
MA0046.1	MA0046.1	0.36
MA0047.2	MA0047.2	0.82
MA0048.1	MA0048.1	0.0409
MA0050.1	MA0050.1	0.131
MA0051.1	MA0051.1	0.0288
MA0052.1	MA0052.1	0.0138
MA0055.1	MA0055.1	1.76462e-4
MA0057.1	MA0057.1	0.417
MA0058.1	MA0058.1	0.702
MA0059.1	MA0059.1	0.763
MA0060.1	MA0060.1	2.75196e-22
MA0061.1	MA0061.1	0.208
MA0062.2	MA0062.2	0.67
MA0065.2	MA0065.2	0.819
MA0066.1	MA0066.1	0.354
MA0067.1	MA0067.1	0.864
MA0068.1	MA0068.1	0.695
MA0069.1	MA0069.1	0.776
MA0070.1	MA0070.1	0.58
MA0071.1	MA0071.1	0.591
MA0072.1	MA0072.1	0.772
MA0073.1	MA0073.1	0.807
MA0074.1	MA0074.1	0.291
MA0076.1	MA0076.1	0.827
MA0077.1	MA0077.1	0.0815
MA0078.1	MA0078.1	0.757
MA0079.2	MA0079.2	0.844
MA0080.2	MA0080.2	1.52078e-6
MA0081.1	MA0081.1	0.00926
MA0083.1	MA0083.1	0.43
MA0084.1	MA0084.1	0.091
MA0087.1	MA0087.1	0.292
MA0088.1	MA0088.1	0.23
MA0090.1	MA0090.1	0.177
MA0091.1	MA0091.1	4.66345e-4
MA0092.1	MA0092.1	0.316
MA0093.1	MA0093.1	0.427
MA0099.2	MA0099.2	0.297
MA0100.1	MA0100.1	0.652
MA0101.1	MA0101.1	0.77
MA0102.2	MA0102.2	0.242
MA0103.1	MA0103.1	7.25164e-6
MA0104.2	MA0104.2	0.297
MA0105.1	MA0105.1	0.0596
MA0106.1	MA0106.1	0.031
MA0107.1	MA0107.1	0.397
MA0108.2	MA0108.2	0.0743
MA0111.1	MA0111.1	0.863
MA0112.2	MA0112.2	0.111
MA0113.1	MA0113.1	0.113
MA0114.1	MA0114.1	0.964
MA0115.1	MA0115.1	0.874
MA0116.1	MA0116.1	0.0383
MA0117.1	MA0117.1	0.272
MA0119.1	MA0119.1	0.838
MA0122.1	MA0122.1	0.789
MA0124.1	MA0124.1	0.744
MA0125.1	MA0125.1	0.146
MA0131.1	MA0131.1	0.237
MA0135.1	MA0135.1	0.279
MA0136.1	MA0136.1	1.52813e-4
MA0137.2	MA0137.2	0.148
MA0138.2	MA0138.2	0.0797
MA0139.1	MA0139.1	0.86
MA0140.1	MA0140.1	0.613
MA0141.1	MA0141.1	0.249
MA0142.1	MA0142.1	0.0179
MA0143.1	MA0143.1	0.874
MA0144.1	MA0144.1	0.305
MA0145.1	MA0145.1	0.431
MA0146.1	MA0146.1	0.218
MA0147.1	MA0147.1	0.146
MA0148.1	MA0148.1	0.532
MA0149.1	MA0149.1	0.04
MA0150.1	MA0150.1	0.696
MA0152.1	MA0152.1	0.311
MA0153.1	MA0153.1	0.643
MA0154.1	MA0154.1	0.015
MA0155.1	MA0155.1	0.31
MA0156.1	MA0156.1	0.11
MA0157.1	MA0157.1	0.447
MA0159.1	MA0159.1	0.818
MA0160.1	MA0160.1	0.443
MA0162.1	MA0162.1	0.927
MA0163.1	MA0163.1	0.15
MA0164.1	MA0164.1	0.732
MA0258.1	MA0258.1	0.0778
MA0259.1	MA0259.1	0.139

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11844

Novel motif	Logo	P-value
1	1	0.729
10	10	0.589
100	100	0.276
101	101	0.392
102	102	0.638
103	103	0.338
104	104	0.844
105	105	0.541
106	106	0.813
107	107	0.695
108	108	0.509
109	109	0.341
11	11	0.195
110	110	0.647
111	111	0.734
112	112	0.232
113	113	0.149
114	114	0.0937
115	115	0.985
116	116	0.528
117	117	0.501
118	118	0.572
119	119	0.677
12	12	0.372
120	120	0.757
121	121	0.969
122	122	0.439
123	123	0.998
124	124	0.0685
125	125	0.961
126	126	0.423
127	127	0.989
128	128	0.358
129	129	0.719
13	13	0.0175
130	130	0.157
131	131	0.0485
132	132	0.426
133	133	0.00139
134	134	0.00794
135	135	0.03
136	136	0.0203
137	137	0.167
138	138	0.594
139	139	0.00416
14	14	0.475
140	140	0.0823
141	141	0.026
142	142	0.826
143	143	0.0405
144	144	0.206
145	145	0.64
146	146	0.932
147	147	0.992
148	148	0.0426
149	149	0.0505
15	15	0.431
150	150	0.389
151	151	0.464
152	152	0.498
153	153	0.643
154	154	0.818
155	155	0.451
156	156	0.867
157	157	0.506
158	158	0.297
159	159	0.269
16	16	0.995
160	160	0.21
161	161	0.673
162	162	0.309
163	163	0.597
164	164	0.676
165	165	0.541
166	166	0.434
167	167	0.402
168	168	0.81
169	169	0.747
17	17	0.471
18	18	0.204
19	19	0.0377
2	2	0.52
20	20	0.0929
21	21	0.867
22	22	0.372
23	23	0.0254
24	24	0.505
25	25	0.642
26	26	0.874
27	27	0.688
28	28	0.754
29	29	0.354
3	3	0.95
30	30	0.816
31	31	0.439
32	32	0.0144
33	33	0.121
34	34	0.143
35	35	0.00605
36	36	0.226
37	37	0.476
38	38	0.854
39	39	0.57
4	4	0.745
40	40	0.0402
41	41	0.181
42	42	0.825
43	43	0.149
44	44	0.864
45	45	0.872
46	46	0.162
47	47	0.498
48	48	0.938
49	49	0.141
5	5	0.164
50	50	0.25
51	51	0.756
52	52	0.857
53	53	0.593
54	54	0.439
55	55	0.341
56	56	0.994
57	57	0.623
58	58	0.252
59	59	0.114
6	6	0.942
60	60	0.423
61	61	0.869
62	62	0.0355
63	63	0.766
64	64	0.973
65	65	0.227
66	66	5.02115e-4
67	67	0.917
68	68	0.0913
69	69	0.938
7	7	0.87
70	70	0.0407
71	71	0.691
72	72	0.339
73	73	0.701
74	74	0.0659
75	75	0.349
76	76	0.866
77	77	0.491
78	78	0.271
79	79	0.266
8	8	0.798
80	80	0.0535
81	81	0.208
82	82	0.00698
83	83	0.332
84	84	0.634
85	85	0.00615
86	86	0.0949
87	87	0.0302
88	88	0.954
89	89	0.118
9	9	0.0213
90	90	0.309
91	91	0.0208
92	92	0.0419
93	93	0.572
94	94	0.129
95	95	0.148
96	96	0.0399
97	97	0.785
98	98	0.319
99	99	0.944

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11844

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007691
+|DRA_sample_Accession=CAGE@SAMD00005858
-|accession_numbers=CAGE;DRX007796;DRR008668;DRZ000093;DRZ001478
+|accession_numbers=CAGE;DRX007796;DRR008668;DRZ000093;DRZ001478;DRZ011443;DRZ012828
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.69!491.06!EHF;;chr17:7493405..7493419,-!p1@SOX15!2.43!267.58!SOX15;;chr6:1312325..1312340,+!p1@FOXQ1!2.42!421.22!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!2.15!140.16!ELF3;;chr1:209979467..209979494,-!p1@IRF6!2.01!113.70!IRF6;;chr1:201979743..201979762,+!p1@ELF3!1.99!97.77!ELF3;;chr11:34642656..34642667,+!p2@EHF!1.92!81.35!EHF;;chr6:10415484..10415508,-!p3@TFAP2A!1.90!78.17!TFAP2A;;chr10:48355030..48355090,+!p1@ZNF488!1.81!81.35!ZNF488;;chr3:189507432..189507459,+!p1@TP63!1.80!61.51!TP63;;chr8:10588010..10588030,-!p1@SOX7!1.70!49.01!SOX7;;chr11:65554528..65554546,+!p1@OVOL1!1.68!46.56!OVOL1;;chr1:6479968..6479986,-!p1@HES2!1.68!46.56!HES2;;chr8:102504651..102504683,+!p1@GRHL2!1.62!41.17!GRHL2;;chr1:209979411..209979433,-!p2@IRF6!1.54!33.57!IRF6;;chr12:54785074..54785122,-!p2@ZNF385A!1.52!49.25!ZNF385A;;chr10:8096772..8096787,+!p2@GATA3!1.52!37.98!GATA3;;chr19:45971246..45971265,+!p1@FOSB!1.51!552.57!FOSB;;chr11:31832658..31832681,-!p1@PAX6!1.51!31.12!PAX6;;chr5:2751762..2751784,-!p1@IRX2!1.51!31.12!IRX2;;chr17:7492684..7492778,-!p2@SOX15!1.44!55.13!SOX15;;chr1:935398..935465,-!p2@HES4!1.43!52.68!HES4;;chr14:38064429..38064486,-!p1@FOXA1!1.41!24.75!FOXA1;;chr3:111314186..111314204,-!p1@ZBED2!1.39!23.28!ZBED2;;chr13:73633131..73633149,+!p1@KLF5!1.38!238.91!KLF5;;chr8:102504979..102505010,+!p2@GRHL2!1.35!21.32!GRHL2;;chr3:193853927..193853944,+!p1@HES1!1.33!644.21!HES1;;chr2:176969228..176969260,+!p1@HOXD11!1.33!20.58!HOXD11;;chr11:65554563..65554576,+!p2@OVOL1!1.33!20.58!OVOL1;;chr6:10412600..10412637,-!p1@TFAP2A!1.32!32.59!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.30!22.30!GATA3;;chr3:12330560..12330579,+!p1@PPARG!1.30!21.56!PPARG;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.30!19.11!SOHLH2;;chr6:10415276..10415341,-!p2@TFAP2A!1.29!22.30!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!1.25!16.91!TBX20;;chr5:134369905..134369972,-!p1@PITX1!1.24!25.24!PITX1;;chr6:10419768..10419819,-!p6@TFAP2A!1.24!16.42!TFAP2A;;chr11:31832610..31832639,-!p5@PAX6!1.24!16.42!PAX6;;chr11:120107344..120107351,+!p1@POU2F3!1.21!18.62!POU2F3;;chr19:23869970..23869991,-!p1@ZNF675!1.19!54.89!ZNF675;;chr15:83953397..83953425,-!p1@BNC1!1.19!16.66!BNC1;;chr12:19556998..19557013,+!p6@AEBP2!1.19!14.46!AEBP2;;chr12:54785054..54785072,-!p4@ZNF385A!1.17!15.44!ZNF385A;;chr2:176969179..176969226,+!p2@HOXD11!1.15!12.99!HOXD11;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.17!TFAP2C;;chr2:45236540..45236577,-!p1@SIX2!1.14!12.74!SIX2;;chr6:1389789..1389821,+!p1@FOXF2!1.13!17.15!FOXF2;;chr20:30193083..30193098,+!p1@ID1!1.12!971.58!ID1;;chr19:58694421..58694485,+!p1@ZNF274!1.12!64.20!ZNF274;;chr22:19748231..19748317,+!p1@TBX1!1.11!12.01!TBX1;;chr7:27192185..27192209,-!p1@HOXA3!1.11!11.76!HOXA3;;chr5:137804484..137804498,+!p2@EGR1!1.10!46.56!EGR1;;chr10:8096631..8096660,+!p1@GATA3!1.09!13.72!GATA3;;chr11:19262421..19262455,-!p3@E2F8!1.09!11.27!E2F8;;chr6:10413188..10413249,-!p7@TFAP2A!1.09!11.27!TFAP2A;;chr20:50721803..50721857,-!p2@ZFP64!1.08!17.40!ZFP64;;chr11:65667846..65667868,-!p1@FOSL1!1.07!286.21!FOSL1;;chr17:46682321..46682362,-!p1@HOXB6!1.07!10.78!HOXB6;;chr12:27485762..27485776,+!p3@ARNTL2!1.06!28.18!ARNTL2;;chr20:31350184..31350200,+!p1@DNMT3B!1.06!22.05!DNMT3B;;chr6:29648890..29648944,-!p1@ZFP57!1.06!10.54!ZFP57;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.54!HOXA11;;chr2:214015343..214015366,-!p3@IKZF2!1.05!10.29!IKZF2;;chr15:96869511..96869525,+!p16@NR2F2!1.04!11.03!NR2F2;;chr8:102504690..102504704,+!p3@GRHL2!1.04!10.05!GRHL2;;chr11:65667884..65667895,-!p2@FOSL1!1.03!37.98!FOSL1;;chr12:19556960..19556982,+!p10@AEBP2!1.02!9.56!AEBP2;;chr13:28543285..28543314,-!p2@CDX2!1.02!9.56!CDX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.02!9.56!ZBED1;;chr11:19263160..19263176,-!p1@E2F8!0.99!10.29!E2F8;;chr19:23433144..23433204,-!p1@ZNF724P!0.98!39.70!ZNF724P;;chr20:42543441..42543497,+!p1@TOX2!0.98!39.45!TOX2;;chr17:46687959..46688007,-!p2@HOXB7!0.97!11.76!HOXB7;;chr2:223163706..223163730,-!p1@PAX3!0.96!8.09!PAX3;;chr19:24097675..24097699,+!p1@ZNF726!0.95!27.20!ZNF726;;chr5:50679228..50679288,+!p1@ISL1!0.95!7.84!ISL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.94!55.38!ARNTL2;;chr2:61108808..61108821,+!p3@REL!0.93!9.56!REL;;chr12:54348655..54348693,+!p1@HOXC12!0.93!7.60!HOXC12;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.20!BHLHE41;;chr6:28048343..28048354,+!p1@ZNF165!0.92!7.35!ZNF165;;chr7:27196267..27196311,-!p1@HOXA7!0.91!7.11!HOXA7;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.87!NCOA7;;chr7:27135591..27135658,-!p1@HOXA1!0.90!13.72!HOXA1;;chr6:10419824..10419840,-!p9@TFAP2A!0.90!6.86!TFAP2A;;chr6:1312155..1312187,+!p2@FOXQ1!0.90!6.86!FOXQ1;;chr14:29235961..29236008,+!p1@FOXG1!0.90!6.86!FOXG1;;chr2:60780753..60780800,-!p1@BCL11A!0.89!34.55!BCL11A;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.62!ZFPM2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.88!61.26!PPP1R13L;;chr19:47523058..47523114,+!p1@NPAS1!0.88!6.62!NPAS1;;chr1:3569072..3569093,+!p1@TP73!0.88!6.62!TP73;;chr19:286732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@@ Line 39: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10717-109I6
 |is_a=EFO:0002091;;FF:0000210;;FF:0102024
 |is_obsolete=
 |library_id=CNhs11844
-|library_ids=CNhs11844
+|library_id_phase_based=2:CNhs11844
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10717
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10717
 |name=acantholytic squamous carcinoma cell line:HCC1806
 |namespace=FANTOM5
@@ Line 49: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11844,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10717-109I6;search_select_hide=table117:FF:10717-109I6
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FF:10717-109I6: Difference between revisions

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Latest revision as of 15:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0