FF:10744-110C6: Difference between revisions

Latest revision as of 15:02, 3 June 2020

Name:	mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162
Species:	Human (Homo sapiens)
Library ID:	CNhs11858
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	26
cell type	t cell
cell line	HuT 102 TIB-162
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005729

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11858		CAGE		DRX007955		DRR008827

Accession ID Hg19

Library id		BAM		CTSS
CNhs11858		DRZ000252		DRZ001637

Accession ID Hg38

Library id		BAM		CTSS
CNhs11858		DRZ011602		DRZ012987

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0794
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.388
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0409
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0408
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0792
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0792
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0792
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0292
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.00706
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.58
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	1.041
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0.0792
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.105
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.146
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.682
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.141
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00827
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0792
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0792
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.368
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.088
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0313
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0792
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.415
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11858

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00575
MA0003.1	MA0003.1	0.879
MA0004.1	MA0004.1	0.35
MA0006.1	MA0006.1	0.736
MA0007.1	MA0007.1	0.434
MA0009.1	MA0009.1	0.816
MA0014.1	MA0014.1	0.466
MA0017.1	MA0017.1	0.107
MA0018.2	MA0018.2	0.306
MA0019.1	MA0019.1	0.828
MA0024.1	MA0024.1	2.62457e-5
MA0025.1	MA0025.1	0.0664
MA0027.1	MA0027.1	0.771
MA0028.1	MA0028.1	0.0105
MA0029.1	MA0029.1	0.906
MA0030.1	MA0030.1	0.197
MA0031.1	MA0031.1	0.659
MA0035.2	MA0035.2	0.0111
MA0038.1	MA0038.1	0.741
MA0039.2	MA0039.2	0.448
MA0040.1	MA0040.1	0.116
MA0041.1	MA0041.1	0.213
MA0042.1	MA0042.1	0.408
MA0043.1	MA0043.1	0.244
MA0046.1	MA0046.1	0.228
MA0047.2	MA0047.2	0.405
MA0048.1	MA0048.1	0.436
MA0050.1	MA0050.1	2.80035e-12
MA0051.1	MA0051.1	2.78462e-9
MA0052.1	MA0052.1	0.482
MA0055.1	MA0055.1	0.442
MA0057.1	MA0057.1	0.98
MA0058.1	MA0058.1	0.563
MA0059.1	MA0059.1	0.167
MA0060.1	MA0060.1	5.81505e-6
MA0061.1	MA0061.1	1.45956e-14
MA0062.2	MA0062.2	1.07386e-6
MA0065.2	MA0065.2	0.0102
MA0066.1	MA0066.1	0.861
MA0067.1	MA0067.1	0.528
MA0068.1	MA0068.1	0.674
MA0069.1	MA0069.1	0.793
MA0070.1	MA0070.1	0.66
MA0071.1	MA0071.1	0.68
MA0072.1	MA0072.1	0.296
MA0073.1	MA0073.1	0.534
MA0074.1	MA0074.1	0.815
MA0076.1	MA0076.1	0.00424
MA0077.1	MA0077.1	0.354
MA0078.1	MA0078.1	0.758
MA0079.2	MA0079.2	0.957
MA0080.2	MA0080.2	4.85116e-6
MA0081.1	MA0081.1	0.31
MA0083.1	MA0083.1	0.0237
MA0084.1	MA0084.1	0.19
MA0087.1	MA0087.1	0.0582
MA0088.1	MA0088.1	0.0942
MA0090.1	MA0090.1	4.92665e-8
MA0091.1	MA0091.1	0.518
MA0092.1	MA0092.1	0.872
MA0093.1	MA0093.1	0.429
MA0099.2	MA0099.2	0.816
MA0100.1	MA0100.1	0.0327
MA0101.1	MA0101.1	6.21034e-13
MA0102.2	MA0102.2	0.344
MA0103.1	MA0103.1	0.954
MA0104.2	MA0104.2	0.0725
MA0105.1	MA0105.1	1.48622e-12
MA0106.1	MA0106.1	0.00486
MA0107.1	MA0107.1	4.42738e-13
MA0108.2	MA0108.2	0.0609
MA0111.1	MA0111.1	0.262
MA0112.2	MA0112.2	0.911
MA0113.1	MA0113.1	0.623
MA0114.1	MA0114.1	0.0206
MA0115.1	MA0115.1	0.747
MA0116.1	MA0116.1	8.89092e-5
MA0117.1	MA0117.1	0.219
MA0119.1	MA0119.1	0.909
MA0122.1	MA0122.1	0.831
MA0124.1	MA0124.1	0.528
MA0125.1	MA0125.1	0.98
MA0131.1	MA0131.1	0.0824
MA0135.1	MA0135.1	0.0921
MA0136.1	MA0136.1	8.34417e-7
MA0137.2	MA0137.2	0.253
MA0138.2	MA0138.2	0.453
MA0139.1	MA0139.1	0.337
MA0140.1	MA0140.1	0.135
MA0141.1	MA0141.1	0.0451
MA0142.1	MA0142.1	0.306
MA0143.1	MA0143.1	0.168
MA0144.1	MA0144.1	0.415
MA0145.1	MA0145.1	0.852
MA0146.1	MA0146.1	0.188
MA0147.1	MA0147.1	0.0441
MA0148.1	MA0148.1	0.665
MA0149.1	MA0149.1	0.199
MA0150.1	MA0150.1	0.75
MA0152.1	MA0152.1	0.0768
MA0153.1	MA0153.1	0.00608
MA0154.1	MA0154.1	0.00505
MA0155.1	MA0155.1	0.591
MA0156.1	MA0156.1	8.68211e-7
MA0157.1	MA0157.1	0.521
MA0159.1	MA0159.1	0.284
MA0160.1	MA0160.1	0.0604
MA0162.1	MA0162.1	0.467
MA0163.1	MA0163.1	1.16377e-6
MA0164.1	MA0164.1	0.887
MA0258.1	MA0258.1	0.185
MA0259.1	MA0259.1	0.59

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11858

Novel motif	Logo	P-value
1	1	0.0208
10	10	0.0219
100	100	0.325
101	101	0.114
102	102	0.358
103	103	0.0796
104	104	0.77
105	105	0.21
106	106	0.379
107	107	0.423
108	108	0.679
109	109	0.0165
11	11	0.113
110	110	0.409
111	111	0.0866
112	112	0.13
113	113	0.526
114	114	0.267
115	115	0.359
116	116	0.131
117	117	0.0259
118	118	0.904
119	119	0.126
12	12	0.396
120	120	0.539
121	121	0.389
122	122	0.218
123	123	2.20598e-4
124	124	0.218
125	125	0.299
126	126	0.809
127	127	0.115
128	128	0.779
129	129	0.285
13	13	0.254
130	130	0.548
131	131	0.98
132	132	0.501
133	133	0.564
134	134	0.578
135	135	0.0387
136	136	0.199
137	137	0.904
138	138	0.704
139	139	0.854
14	14	0.444
140	140	0.558
141	141	0.786
142	142	0.813
143	143	0.00195
144	144	0.282
145	145	0.803
146	146	0.308
147	147	0.0494
148	148	0.00492
149	149	0.379
15	15	0.136
150	150	0.428
151	151	0.93
152	152	0.938
153	153	0.599
154	154	0.556
155	155	0.187
156	156	0.207
157	157	0.445
158	158	0.732
159	159	0.124
16	16	0.686
160	160	0.323
161	161	0.225
162	162	0.129
163	163	0.417
164	164	0.52
165	165	0.781
166	166	0.642
167	167	0.407
168	168	0.827
169	169	0.997
17	17	0.534
18	18	0.494
19	19	0.837
2	2	0.678
20	20	0.424
21	21	0.208
22	22	0.815
23	23	0.381
24	24	0.295
25	25	0.0563
26	26	0.124
27	27	0.371
28	28	0.332
29	29	0.0152
3	3	0.203
30	30	0.0387
31	31	0.773
32	32	0.511
33	33	0.915
34	34	0.488
35	35	0.513
36	36	0.0228
37	37	0.112
38	38	0.91
39	39	0.316
4	4	0.106
40	40	0.223
41	41	0.794
42	42	0.0894
43	43	0.453
44	44	0.033
45	45	0.225
46	46	0.309
47	47	0.12
48	48	0.356
49	49	0.252
5	5	0.794
50	50	0.569
51	51	0.534
52	52	0.503
53	53	0.324
54	54	0.819
55	55	0.0494
56	56	0.899
57	57	0.27
58	58	0.0639
59	59	0.672
6	6	0.827
60	60	0.616
61	61	0.444
62	62	0.0831
63	63	0.975
64	64	0.159
65	65	0.718
66	66	0.0148
67	67	0.158
68	68	0.134
69	69	0.273
7	7	0.285
70	70	0.465
71	71	0.0309
72	72	0.3
73	73	0.357
74	74	0.395
75	75	0.114
76	76	0.748
77	77	0.348
78	78	0.0147
79	79	0.451
8	8	0.406
80	80	0.396
81	81	0.273
82	82	0.53
83	83	0.0818
84	84	0.1
85	85	0.99
86	86	0.135
87	87	0.0246
88	88	0.488
89	89	0.494
9	9	0.926
90	90	0.666
91	91	0.838
92	92	0.581
93	93	0.154
94	94	0.457
95	95	0.00261
96	96	0.023
97	97	0.132
98	98	0.997
99	99	0.0934

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11858

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:8691 mycosis fungoides
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103212 T-lymphoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
0060060 (non-Hodgkin lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
0060061 (cutaneous T cell lymphoma)
8691 (mycosis fungoides)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0103212 (T-lymphoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005729
+|accession_numbers=CAGE;DRX007955;DRR008827;DRZ000252;DRZ001637;DRZ011602;DRZ012987
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.28!190.99!IRF4;;chr3:111314186..111314204,-!p1@ZBED2!2.13!135.19!ZBED2;;chr3:189349162..189349207,+!p2@TP63!2.12!131.19!TP63;;chr4:57522513..57522548,-!p4@HOPX!2.05!109.99!HOPX;;chr1:25256756..25256774,-!p1@RUNX3!1.71!91.59!RUNX3;;chr14:75988831..75988847,+!p2@BATF!1.67!45.40!BATF;;chr4:57522476..57522500,-!p7@HOPX!1.66!44.40!HOPX;;chr13:28494130..28494168,+!p1@PDX1!1.63!41.60!PDX1;;chr10:64576105..64576133,-!p1@EGR2!1.62!81.79!EGR2;;chr1:38512457..38512474,-!p1@POU3F1!1.61!43.60!POU3F1;;chr20:50159198..50159299,-!p1@NFATC2!1.58!53.40!NFATC2;;chr6:106546808..106546833,+!p3@PRDM1!1.57!45.20!PRDM1;;chr3:12330560..12330579,+!p1@PPARG!1.55!39.00!PPARG;;chr17:45810594..45810608,+!p1@TBX21!1.55!34.60!TBX21;;chr10:8096631..8096660,+!p1@GATA3!1.46!33.80!GATA3;;chr7:128577972..128578047,+!p1@IRF5!1.44!41.20!IRF5;;chr10:8096772..8096787,+!p2@GATA3!1.44!31.00!GATA3;;chr10:64576035..64576046,-!p2@EGR2!1.44!26.60!EGR2;;chr4:57522166..57522260,-!p2@HOPX!1.43!29.60!HOPX;;chr1:25291475..25291511,-!p2@RUNX3!1.43!26.00!RUNX3;;chr14:75988771..75988826,+!p1@BATF!1.42!33.80!BATF;;chr6:106546834..106546850,+!p4@PRDM1!1.41!24.60!PRDM1;;chr3:18486354..18486377,-!p2@SATB1!1.40!29.80!SATB1;;chr8:72756637..72756664,-!p3@MSC!1.37!25.20!MSC;;chr9:117150254..117150271,-!p1@AKNA!1.36!58.60!AKNA;;chr8:72756063..72756125,-!p1@MSC!1.34!41.60!MSC;;chr1:212873084..212873137,-!p2@BATF3!1.33!20.40!BATF3;;chr1:212873162..212873188,-!p3@BATF3!1.31!19.40!BATF3;;chr17:38020392..38020477,-!p1@IKZF3!1.31!19.20!IKZF3;;chr12:48276548..48276564,-!p3@VDR!1.27!17.60!VDR;;chr9:2015335..2015370,+!p1@SMARCA2!1.24!194.59!SMARCA2;;chr1:212873267..212873332,-!p1@BATF3!1.24!22.00!BATF3;;chr17:40440359..40440386,+!p4@STAT5A!1.24!16.20!STAT5A;;chr19:36204309..36204335,+!p1@ZBTB32!1.24!16.20!ZBTB32;;chr6:135502501..135502546,+!p1@MYB!1.22!18.60!MYB;;chr6:36355431..36355466,-!p1@ETV7!1.22!15.60!ETV7;;chr4:57522598..57522664,-!p3@HOPX!1.20!15.00!HOPX;;chr6:135502408..135502459,+!p2@MYB!1.19!16.80!MYB;;chr7:50343634..50343717,+!p2@IKZF1!1.19!14.40!IKZF1;;chr9:1050331..1050363,+!p1@DMRT2!1.18!14.00!DMRT2;;chr12:52445218..52445237,+!p1@NR4A1!1.17!170.39!NR4A1;;chr6:36355360..36355392,-!p4@ETV7!1.17!13.80!ETV7;;chr7:50344289..50344323,+!p1@IKZF1!1.17!13.80!IKZF1;;chr8:60031619..60031676,-!p1@TOX!1.16!29.00!TOX;;chr1:3569072..3569093,+!p1@TP73!1.16!13.40!TP73;;chr12:103351444..103351461,+!p1@ASCL1!1.16!13.40!ASCL1;;chrY:21906594..21906622,-!p1@KDM5D!1.15!13.20!KDM5D;;chr6:137815524..137815537,-!p1@OLIG3!1.15!13.00!OLIG3;;chr17:40441354..40441410,+!p2@STAT5A!1.15!13.00!STAT5A;;chr2:185463247..185463263,+!p1@ZNF804A!1.14!22.80!ZNF804A;;chr3:101546827..101546847,+!p2@NFKBIZ!1.12!17.00!NFKBIZ;;chr17:40440225..40440268,+!p3@STAT5A!1.12!15.60!STAT5A;;chr6:106534192..106534224,+!p1@PRDM1!1.11!33.40!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!1.11!14.60!IRF2;;chr6:100912752..100912778,-!p2@SIM1!1.11!12.00!SIM1;;chr6:106534230..106534254,+!p2@PRDM1!1.10!29.20!PRDM1;;chr10:35484053..35484076,+!p1@CREM!1.09!28.20!CREM;;chr7:50348268..50348366,+!p4@IKZF1!1.08!11.00!IKZF1;;chr4:185395633..185395651,-!p2@IRF2!1.07!17.20!IRF2;;chr8:72756667..72756736,-!p2@MSC!1.07!16.80!MSC;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.40!IKZF1;;chr12:56414795..56414836,+!p4@IKZF4!1.06!10.40!IKZF4;;chr4:144435112..144435176,+!p3@SMARCA5!1.05!21.20!SMARCA5;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!26.80!ARNTL2;;chr6:126240380..126240430,+!p2@NCOA7!1.04!26.40!NCOA7;;chr19:19729477..19729542,-!p1@PBX4!1.04!21.40!PBX4;;chr3:111314230..111314241,-!p2@ZBED2!1.04!10.00!ZBED2;;chr15:74833584..74833626,+!p1@ARID3B!1.03!23.00!ARID3B;;chr13:28494109..28494122,+!p2@PDX1!1.03!9.60!PDX1;;chr3:5021268..5021282,+!p4@BHLHE40!1.02!19.40!BHLHE40;;chr11:129245736..129245758,+!p2@BARX2!1.02!9.40!BARX2;;chr6:100912785..100912822,-!p1@SIM1!1.02!9.40!SIM1;;chr10:104155659..104155676,+!p4@NFKB2!1.01!11.60!NFKB2;;chr3:189348969..189349018,+!p4@TP63!1.01!9.20!TP63;;chr4:57522674..57522699,-!p5@HOPX!1.01!9.20!HOPX;;chr20:42543441..42543497,+!p1@TOX2!1.00!41.00!TOX2;;chr5:88178983..88179012,-!p1@MEF2C!0.98!68.20!MEF2C;;chr19:18392236..18392248,-!p2@JUND!0.98!58.40!JUND;;chr6:42419649..42419673,-!p3@TRERF1!0.98!15.00!TRERF1;;chr6:41700616..41700664,-!p8@TFEB!0.98!8.60!TFEB;;chr2:45168834..45168847,+!p2@SIX3!0.98!8.60!SIX3;;chr10:104155480..104155534,+!p2@NFKB2!0.97!55.60!NFKB2;;chr5:137801160..137801176,+!p1@EGR1!0.96!825.75!EGR1;;chr10:104154246..104154347,+!p3@NFKB2!0.96!50.80!NFKB2;;chr12:48298765..48298783,-!p2@VDR!0.96!17.40!VDR;;chr1:212782094..212782109,+!p1@ATF3!0.95!222.99!ATF3;;chr14:75745523..75745537,+!p1@FOS!0.94!947.34!FOS;;chr12:27485785..27485816,+!p1@ARNTL2!0.94!55.20!ARNTL2;;chr5:137804484..137804498,+!p2@EGR1!0.94!32.20!EGR1;;chr1:212873200..212873230,-!p5@BATF3!0.94!7.80!BATF3;;chr19:4153613..4153652,+!p1@CREB3L3!0.93!7.60!CREB3L3;;chr2:45168875..45168916,+!p1@SIX3!0.93!7.60!SIX3;;chr6:106546731..106546755,+!p5@PRDM1!0.91!7.20!PRDM1;;chr2:97202480..97202499,+!p1@ARID5A!0.90!73.20!ARID5A;;chr8:60031682..60031710,-!p2@TOX!0.90!11.40!TOX;;chr12:56415246..56415286,+!p2@IKZF4!0.90!7.00!IKZF4;;chr21:47063625..47063658,+!p1@PCBP3!0.89!30.60!PCBP3;;chr6:1389789..1389821,+!p1@FOXF2!0.89!9.40!FOXF2;;chr11:47236584..47236679,+!p1@DDB2!0.88!75.60!DDB2;;chr19:18392250..18392260,-!p4@JUND!0.88!22.00!JUND;;chr6:137815425..137815444,-!p2@OLIG3!0.88!6.60!OLIG3;;chr19:45252008..45252024,+!p2@BCL3!0.87!22.40!BCL3;;chr6:10412392..10412409,-!p4@TFAP2A!0.87!7.40!TFAP2A;;chr2:61108878..61108891,+!p5@REL!0.87!6.40!REL;;chr12:48298785..48298828,-!p1@VDR!0.86!35.20!VDR;;chr2:157189180..157189290,-!p1@NR4A2!0.86!34.20!NR4A2;;chr16:68119324..68119364,+!p1@NFATC3!0.86!29.40!NFATC3;;chr8:60031762..60031803,-!p3@TOX!0.86!9.20!TOX;;chr6:126240442..126240459,+!p4@NCOA7!0.85!8.00!NCOA7;;chr6:36355397..36355406,-!p5@ETV7!0.85!6.00!ETV7;;chr7:35293685..35293718,-!p1@TBX20!0.85!6.00!TBX20;;chr13:41240717..41240735,-!p2@FOXO1!0.83!42.00!FOXO1;;chr8:72756267..72756296,-!p4@MSC!0.83!8.60!MSC;;chr2:61108808..61108821,+!p3@REL!0.83!7.40!REL;;chr12:27485889..27485900,+!p4@ARNTL2!0.83!7.00!ARNTL2;;chr8:128747846..128747860,+!p15@MYC!0.83!5.80!MYC;;chr3:18480217..18480239,-!p3@SATB1!0.83!5.80!SATB1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.83!5.80!MEF2B;;chr17:45810816..45810838,+!p2@TBX21!0.82!5.60!TBX21;;chr11:129245526..129245553,+!p1@BARX2!0.82!5.60!BARX2;;chr1:158978768..158978800,+!p8@IFI16!0.82!5.60!IFI16;;chr6:106546786..106546802,+!p6@PRDM1!0.82!5.60!PRDM1;;chr19:12902289..12902307,+!p1@JUNB!0.81!1345.32!JUNB;;chr5:142814241..142814278,-!p12@NR3C1!0.81!5.40!NR3C1;;chr1:3569101..3569115,+!p2@TP73!0.81!5.40!TP73;;chr1:151319654..151319698,-!p2@RFX5!0.80!12.20!RFX5;;chr9:2015306..2015323,+!p3@SMARCA2!0.79!14.60!SMARCA2;;chr4:185395191..185395226,-!p4@IRF2!0.79!7.40!IRF2;;chr2:45168959..45168990,+!p6@SIX3!0.79!5.20!SIX3;;chr19:18392422..18392440,-!p1@JUND!0.78!762.15!JUND;;chr6:42419290..42419314,-!p5@TRERF1!0.78!6.60!TRERF1;;chr10:8095593..8095625,+!p3@GATA3!0.78!6.00!GATA3;;chr8:72755987..72756002,-!p7@MSC!0.78!5.00!MSC;;chr3:18480173..18480189,-!p6@SATB1!0.78!5.00!SATB1;;chr8:60031809..60031835,-!p4@TOX!0.77!6.40!TOX;;chr12:27485823..27485868,+!p2@ARNTL2!0.76!21.20!ARNTL2;;chr3:5021191..5021202,+!p3@BHLHE40!0.76!13.80!BHLHE40;;chr14:75988851..75988862,+!p3@BATF!0.76!4.80!BATF;;chr5:131826457..131826514,-!p1@IRF1!0.75!200.99!IRF1;;chr1:3569135..3569150,+!p3@TP73!0.75!4.60!TP73;;chr1:92951607..92951661,-!p1@GFI1!0.75!4.60!GFI1;;chr2:63277948..63277974,+!p1@OTX1!0.75!4.60!OTX1;;chr4:26322267..26322334,+!p3@RBPJ!0.74!11.60!RBPJ;;chr6:91006518..91006570,-!p1@BACH2!0.74!11.20!BACH2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.74!5.80!L3MBTL4;;chr14:35873947..35873965,-!p1@NFKBIA!0.73!311.98!NFKBIA;;chr19:45971246..45971265,+!p1@FOSB!0.73!90.99!FOSB;;chr19:54058073..54058088,+!p1@ZNF331!0.73!4.40!ZNF331;;chr17:40440446..40440464,+!p5@STAT5A!0.73!4.40!STAT5A;;chr6:106546922..106546925,+!p22@PRDM1!0.73!4.40!PRDM1;;chr12:56415287..56415300,+!p5@IKZF4!0.73!4.40!IKZF4;;chr6:31126291..31126399,+!p1@TCF19!0.72!45.20!TCF19;;chr3:5021026..5021035,+!p5@BHLHE40!0.72!5.40!BHLHE40;;chr5:142780237..142780261,-!p7@NR3C1!0.72!4.20!NR3C1;;chr6:36355486..36355497,-!p3@ETV7!0.72!4.20!ETV7;;chr17:38020557..38020572,-!p4@IKZF3!0.72!4.20!IKZF3;;chr2:8822176..8822196,+!p1@ID2!0.71!659.56!ID2;;chr11:62369108..62369183,-!p3@MTA2!0.71!60.60!MTA2;;chr19:45504688..45504782,+!p1@RELB!0.71!27.80!RELB;;chr7:148581360..148581425,-!p1@EZH2!0.71!22.80!EZH2;;chr16:67063211..67063240,+!p2@CBFB!0.70!21.40!CBFB;;chr1:26697243..26697258,-!p1@ZNF683!0.70!4.00!ZNF683;;chr2:45168997..45169020,+!p4@SIX3!0.70!4.00!SIX3;;chrY:2803415..2803468,+!p1@ZFY!0.70!4.00!ZFY;;chr3:5021113..5021180,+!p1@BHLHE40!0.69!313.58!BHLHE40;;chr21:40177845..40177863,+!p1@ETS2!0.69!268.58!ETS2;;chr1:27023752..27023799,+!p4@ARID1A!0.69!5.40!ARID1A;;chr20:51588873..51588953,+!p1@TSHZ2!0.69!5.40!TSHZ2;;chr17:40440481..40440550,+!p1@STAT5A!0.68!31.20!STAT5A;;chr4:81118647..81118666,+!p1@PRDM8!0.68!5.20!PRDM8;;chr3:141747950..141748004,-!p7@TFDP2!0.68!3.80!TFDP2;;chr6:44233252..44233296,-!p1@NFKBIE!0.67!42.00!NFKBIE;;chr2:208030647..208030689,-!p1@KLF7!0.67!35.80!KLF7;;chr6:144385698..144385742,-!p2@PLAGL1!0.67!4.60!PLAGL1;;chr6:126240463..126240489,+!p6@NCOA7!0.67!4.20!NCOA7;;chr1:209979467..209979494,-!p1@IRF6!0.67!4.20!IRF6;;chr20:56195474..56195506,-!p1@ZBP1!0.66!3.60!ZBP1;;chr5:142814316..142814335,-!p18@NR3C1!0.66!3.60!NR3C1;;chr20:30795511..30795562,-!p1@PLAGL2!0.65!73.20!PLAGL2;;chr16:31885093..31885165,+!p1@ZNF267!0.65!61.60!ZNF267;;chr3:39195075..39195088,-!p1@CSRNP1!0.65!25.40!CSRNP1;;chr15:56535468..56535521,-!p2@RFX7!0.65!7.00!RFX7;;chr12:19593515..19593573,+!p9@AEBP2!0.65!5.00!AEBP2;;chr20:42295713..42295738,+!p2@MYBL2!0.64!23.20!MYBL2;;chr8:72756023..72756055,-!p6@MSC!0.64!4.40!MSC;;chr6:106546871..106546878,+!p17@PRDM1!0.64!3.40!PRDM1;;chr6:106547079..106547114,+!p9@PRDM1!0.64!3.40!PRDM1;;chr6:135502472..135502489,+!p3@MYB!0.64!3.40!MYB;;chr1:151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+|ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=FF:0100104
 |fonse_cell_line_closure=FF:0100104
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mycosis%2520fungoides%252c%2520T%2520cell%2520lymphoma%2520cell%2520line%253aHuT%2520102%2520TIB-162.CNhs11858.10744-110C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mycosis%2520fungoides%252c%2520T%2520cell%2520lymphoma%2520cell%2520line%253aHuT%2520102%2520TIB-162.CNhs11858.10744-110C6.hg19.ctss.bed.gz
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 |name=mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162
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@@ Line 45: / Line 60: @@
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 |sample_cell_line=HuT 102 TIB-162
@@ Line 81: / Line 100: @@
 |top_motifs=TLX2:2.24650583987;RORA:1.85016307054;ELF1,2,4:1.35475968022;FOXP3:1.354727675;NFKB1_REL_RELA:1.34707016116;RUNX1..3:1.28805021909;IRF1,2:1.18276450663;CDX1,2,4:1.16840912832;ESR1:1.13263047672;POU2F1..3:1.12273400339;NFY{A,B,C}:1.05759367862;CREB1:1.05403389354;E2F1..5:1.03912705491;YY1:1.03701193254;MYOD1:1.02510442988;MYB:1.01039912525;STAT2,4,6:1.00114270047;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.96645498956;CRX:0.914551644104;TGIF1:0.912765095398;NKX6-1,2:0.857120075392;ZBTB16:0.830626184155;IKZF2:0.82000201941;PAX4:0.735744322409;PBX1:0.706370195076;AIRE:0.695339399886;DMAP1_NCOR{1,2}_SMARC:0.687722402792;HES1:0.678586427373;SPI1:0.658835488949;FOXP1:0.625885187375;TP53:0.594314096124;POU3F1..4:0.588907686543;GATA6:0.565421227689;TFDP1:0.558674533462;NKX2-1,4:0.553036197367;ATF4:0.53019881658;HOXA9_MEIS1:0.510143731867;PAX6:0.480881825772;RFX2..5_RFXANK_RFXAP:0.475318159557;ZNF148:0.469279438412;POU1F1:0.458397042506;HSF1,2:0.447625450738;NR1H4:0.412289316171;ATF5_CREB3:0.407677887561;ELK1,4_GABP{A,B1}:0.402223501715;NR5A1,2:0.39335219161;ETS1,2:0.364979769761;HNF4A_NR2F1,2:0.349556525571;BREu{core}:0.303235929428;GFI1:0.283055627488;PAX3,7:0.269636968872;FOXM1:0.257358116767;PAX8:0.250713817633;GCM1,2:0.242962592781;PDX1:0.214190530925;SRF:0.195590723838;CUX2:0.191533125756;NKX3-2:0.185915781899;STAT5{A,B}:0.181273040153;PRRX1,2:0.170940733308;SPIB:0.15316417028;NRF1:0.145038597654;SOX17:0.143735932982;T:0.100894406693;SOX{8,9,10}:0.0995769438756;FOXN1:0.0828358030259;MYFfamily:0.0820831816852;HOX{A6,A7,B6,B7}:0.0791688280108;FOXA2:0.0732680694112;VSX1,2:0.072178618511;IRF7:0.0467189271519;BPTF:0.0373577778522;STAT1,3:0.0206644613237;PAX1,9:-0.00536125601394;ATF2:-0.0112491782739;ZNF143:-0.0193496913032;LEF1_TCF7_TCF7L1,2:-0.0208048916754;HOX{A4,D4}:-0.0216479789941;NANOG:-0.030331481488;NKX3-1:-0.043848862428;ONECUT1,2:-0.0463061789073;EVI1:-0.0472228888592;TEF:-0.0509267652328;LMO2:-0.0537765484741;JUN:-0.0582968385323;ZNF423:-0.0868352805203;MAFB:-0.0955623362508;GLI1..3:-0.113426728453;GZF1:-0.122512707504;FOSL2:-0.125432528729;NANOG{mouse}:-0.150562138432;HMX1:-0.154266430893;PAX2:-0.15605823152;FOS_FOS{B,L1}_JUN{B,D}:-0.164049455743;HNF1A:-0.170622864022;SNAI1..3:-0.196934596561;HAND1,2:-0.20055174298;ZEB1:-0.208210224041;POU5F1:-0.230503886963;ALX1:-0.232109736292;ESRRA:-0.233620433082;BACH2:-0.244960519764;FOX{F1,F2,J1}:-0.265341525741;NFE2:-0.269279243355;NFIX:-0.280642633438;NFE2L1:-0.285784412789;MTF1:-0.306373314087;GFI1B:-0.316720941493;ZFP161:-0.321961986506;PRDM1:-0.323406918701;AR:-0.328237871376;EGR1..3:-0.354659983514;TOPORS:-0.358544920826;MEF2{A,B,C,D}:-0.369011150155;NFE2L2:-0.374573836178;UFEwm:-0.393443845048;NKX2-3_NKX2-5:-0.400660764189;FOX{I1,J2}:-0.409477542457;AHR_ARNT_ARNT2:-0.416875839692;RXRA_VDR{dimer}:-0.42184822237;TBP:-0.423349075998;MTE{core}:-0.442812331736;ATF6:-0.452336732917;REST:-0.460467970516;ZIC1..3:-0.463411169389;PITX1..3:-0.469372916679;TFAP2B:-0.473252266927;EN1,2:-0.479375109368;ARID5B:-0.492975073381;CEBPA,B_DDIT3:-0.508838803278;SOX5:-0.510101208041;NR3C1:-0.511469657449;EP300:-0.516709718922;ZNF384:-0.545457422657;FOXQ1:-0.559604658566;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.563523631062;NFATC1..3:-0.574007380164;DBP:-0.581346922619;ZBTB6:-0.592525456448;RREB1:-0.599756724405;OCT4_SOX2{dimer}:-0.601192655906;TFCP2:-0.619657437824;SOX2:-0.642781938325;HIC1:-0.645908369228;SMAD1..7,9:-0.669281825517;GATA4:-0.6914163598;FOXO1,3,4:-0.6937350069;TFAP4:-0.69560105214;RFX1:-0.706210807622;KLF4:-0.729958603036;FOX{D1,D2}:-0.748457012946;EBF1:-0.749595167463;bHLH_family:-0.762538328543;TAL1_TCF{3,4,12}:-0.782952741799;NHLH1,2:-0.788021020015;CDC5L:-0.791482657146;ZNF238:-0.798571543;HLF:-0.798947569275;SREBF1,2:-0.80738962191;POU6F1:-0.814070913487;NFIL3:-0.814954200516;FOXD3:-0.816798487182;NR6A1:-0.835513850297;TBX4,5:-0.846302711853;RBPJ:-0.849648918368;MED-1{core}:-0.871144033859;IKZF1:-0.891211731682;NKX2-2,8:-0.893984962353;PPARG:-0.907102117805;SPZ1:-0.936053948517;PAX5:-1.00451699457;GTF2A1,2:-1.00900009128;HMGA1,2:-1.02388115215;MZF1:-1.03777150451;ALX4:-1.04845606851;TFAP2{A,C}:-1.06031102072;XBP1:-1.07361244618;MYBL2:-1.07571852689;HIF1A:-1.08852099177;LHX3,4:-1.0964389247;PATZ1:-1.12975306663;MAZ:-1.1528436423;XCPE1{core}:-1.1794992463;RXR{A,B,G}:-1.17978868443;GTF2I:-1.24457671838;SP1:-1.26080904581;HOX{A5,B5}:-1.28470610641;TLX1..3_NFIC{dimer}:-1.36832028467;HBP1_HMGB_SSRP1_UBTF:-1.3718083974;FOXL1:-1.50623407951;TEAD1:-1.58546837461;ADNP_IRX_SIX_ZHX:-1.61922131385
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10744-110C6;search_select_hide=table117:FF:10744-110C6
 }}

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FF:10744-110C6: Difference between revisions

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Latest revision as of 15:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0