FF:10782-110G8: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	liposarcoma cell line:KMLS-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11870
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	retroperitoneum
dev stage	NA
sex	female
age	unknown
cell type	adipocyte
cell line	KMLS-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005621

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11870		CAGE		DRX007920		DRR008792

Accession ID Hg19

Library id		BAM		CTSS
CNhs11870		DRZ000217		DRZ001602

Accession ID Hg38

Library id		BAM		CTSS
CNhs11870		DRZ011567		DRZ012952

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.231
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0272
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.721
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.034
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	1.088
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.00711
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.127
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.189
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0683
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.237
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.268
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-6.31285e-4
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0683
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.127
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.707
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.609
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.341
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.551
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.864
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11870

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.115
MA0003.1	MA0003.1	0.319
MA0004.1	MA0004.1	0.884
MA0006.1	MA0006.1	0.562
MA0007.1	MA0007.1	0.673
MA0009.1	MA0009.1	0.0129
MA0014.1	MA0014.1	0.375
MA0017.1	MA0017.1	0.126
MA0018.2	MA0018.2	0.0547
MA0019.1	MA0019.1	0.397
MA0024.1	MA0024.1	0.0701
MA0025.1	MA0025.1	0.00366
MA0027.1	MA0027.1	0.574
MA0028.1	MA0028.1	0.163
MA0029.1	MA0029.1	0.0684
MA0030.1	MA0030.1	0.00606
MA0031.1	MA0031.1	0.00566
MA0035.2	MA0035.2	0.0176
MA0038.1	MA0038.1	0.412
MA0039.2	MA0039.2	0.00182
MA0040.1	MA0040.1	0.341
MA0041.1	MA0041.1	0.357
MA0042.1	MA0042.1	0.888
MA0043.1	MA0043.1	0.00217
MA0046.1	MA0046.1	0.0431
MA0047.2	MA0047.2	0.0465
MA0048.1	MA0048.1	0.107
MA0050.1	MA0050.1	0.0393
MA0051.1	MA0051.1	0.268
MA0052.1	MA0052.1	7.20182e-5
MA0055.1	MA0055.1	0.792
MA0057.1	MA0057.1	0.876
MA0058.1	MA0058.1	0.914
MA0059.1	MA0059.1	0.866
MA0060.1	MA0060.1	0.0161
MA0061.1	MA0061.1	8.31631e-4
MA0062.2	MA0062.2	0.605
MA0065.2	MA0065.2	0.00725
MA0066.1	MA0066.1	0.292
MA0067.1	MA0067.1	0.135
MA0068.1	MA0068.1	0.0407
MA0069.1	MA0069.1	0.0234
MA0070.1	MA0070.1	0.135
MA0071.1	MA0071.1	0.594
MA0072.1	MA0072.1	0.424
MA0073.1	MA0073.1	0.774
MA0074.1	MA0074.1	0.689
MA0076.1	MA0076.1	0.0787
MA0077.1	MA0077.1	0.376
MA0078.1	MA0078.1	0.239
MA0079.2	MA0079.2	0.717
MA0080.2	MA0080.2	1.7529e-10
MA0081.1	MA0081.1	0.0976
MA0083.1	MA0083.1	0.193
MA0084.1	MA0084.1	0.53
MA0087.1	MA0087.1	0.387
MA0088.1	MA0088.1	0.7
MA0090.1	MA0090.1	0.00284
MA0091.1	MA0091.1	0.712
MA0092.1	MA0092.1	0.997
MA0093.1	MA0093.1	0.953
MA0099.2	MA0099.2	7.63838e-4
MA0100.1	MA0100.1	0.27
MA0101.1	MA0101.1	7.16227e-4
MA0102.2	MA0102.2	7.48404e-4
MA0103.1	MA0103.1	6.9491e-7
MA0104.2	MA0104.2	0.11
MA0105.1	MA0105.1	0.00549
MA0106.1	MA0106.1	0.111
MA0107.1	MA0107.1	9.88759e-4
MA0108.2	MA0108.2	3.3005e-5
MA0111.1	MA0111.1	0.808
MA0112.2	MA0112.2	0.0931
MA0113.1	MA0113.1	0.794
MA0114.1	MA0114.1	0.0673
MA0115.1	MA0115.1	0.206
MA0116.1	MA0116.1	0.0339
MA0117.1	MA0117.1	0.982
MA0119.1	MA0119.1	0.632
MA0122.1	MA0122.1	0.389
MA0124.1	MA0124.1	0.0487
MA0125.1	MA0125.1	0.064
MA0131.1	MA0131.1	0.549
MA0135.1	MA0135.1	0.306
MA0136.1	MA0136.1	1.33944e-10
MA0137.2	MA0137.2	0.783
MA0138.2	MA0138.2	0.911
MA0139.1	MA0139.1	0.728
MA0140.1	MA0140.1	0.216
MA0141.1	MA0141.1	0.114
MA0142.1	MA0142.1	0.106
MA0143.1	MA0143.1	0.207
MA0144.1	MA0144.1	0.487
MA0145.1	MA0145.1	0.361
MA0146.1	MA0146.1	0.441
MA0147.1	MA0147.1	0.125
MA0148.1	MA0148.1	0.0331
MA0149.1	MA0149.1	0.635
MA0150.1	MA0150.1	0.311
MA0152.1	MA0152.1	0.426
MA0153.1	MA0153.1	0.145
MA0154.1	MA0154.1	0.00284
MA0155.1	MA0155.1	0.536
MA0156.1	MA0156.1	6.16546e-5
MA0157.1	MA0157.1	0.043
MA0159.1	MA0159.1	0.097
MA0160.1	MA0160.1	0.0393
MA0162.1	MA0162.1	0.938
MA0163.1	MA0163.1	0.834
MA0164.1	MA0164.1	0.218
MA0258.1	MA0258.1	0.135
MA0259.1	MA0259.1	0.821

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11870

Novel motif	Logo	P-value
1	1	0.602
10	10	0.641
100	100	0.454
101	101	0.786
102	102	0.695
103	103	0.895
104	104	0.442
105	105	0.29
106	106	0.0809
107	107	0.282
108	108	0.115
109	109	0.295
11	11	0.36
110	110	0.361
111	111	0.781
112	112	0.836
113	113	0.026
114	114	0.448
115	115	0.852
116	116	0.279
117	117	0.541
118	118	0.629
119	119	0.897
12	12	0.519
120	120	0.968
121	121	0.992
122	122	0.0269
123	123	0.881
124	124	0.903
125	125	0.767
126	126	0.0452
127	127	0.745
128	128	0.239
129	129	0.467
13	13	0.15
130	130	0.541
131	131	0.501
132	132	0.327
133	133	0.62
134	134	0.863
135	135	0.241
136	136	0.742
137	137	0.636
138	138	0.906
139	139	0.969
14	14	0.244
140	140	0.78
141	141	0.103
142	142	0.951
143	143	0.528
144	144	0.265
145	145	0.431
146	146	0.0866
147	147	0.229
148	148	0.793
149	149	0.922
15	15	0.0884
150	150	0.182
151	151	0.2
152	152	0.897
153	153	0.792
154	154	0.261
155	155	0.172
156	156	0.54
157	157	0.774
158	158	0.0152
159	159	0.158
16	16	0.369
160	160	0.103
161	161	0.013
162	162	0.269
163	163	0.297
164	164	0.645
165	165	0.619
166	166	0.147
167	167	0.488
168	168	0.157
169	169	0.319
17	17	0.893
18	18	0.444
19	19	0.527
2	2	0.871
20	20	0.756
21	21	0.256
22	22	0.701
23	23	0.119
24	24	0.58
25	25	0.0806
26	26	0.91
27	27	0.467
28	28	0.469
29	29	0.473
3	3	0.569
30	30	0.494
31	31	0.743
32	32	7.64878e-6
33	33	0.475
34	34	0.356
35	35	0.781
36	36	0.102
37	37	0.864
38	38	0.194
39	39	0.553
4	4	0.948
40	40	0.00726
41	41	0.209
42	42	0.445
43	43	0.455
44	44	0.807
45	45	0.21
46	46	0.861
47	47	0.583
48	48	0.582
49	49	0.252
5	5	0.608
50	50	0.824
51	51	0.529
52	52	0.202
53	53	0.729
54	54	0.559
55	55	0.0335
56	56	0.888
57	57	0.783
58	58	0.259
59	59	0.221
6	6	0.668
60	60	0.0608
61	61	0.699
62	62	0.295
63	63	0.413
64	64	0.354
65	65	0.248
66	66	0.51
67	67	0.914
68	68	0.629
69	69	0.711
7	7	0.0229
70	70	0.158
71	71	0.818
72	72	0.281
73	73	0.889
74	74	0.323
75	75	0.762
76	76	0.95
77	77	0.914
78	78	0.551
79	79	0.261
8	8	0.913
80	80	0.25
81	81	0.947
82	82	0.601
83	83	0.513
84	84	0.784
85	85	0.373
86	86	0.666
87	87	0.636
88	88	0.649
89	89	0.616
9	9	0.33
90	90	0.273
91	91	0.169
92	92	0.999
93	93	0.776
94	94	0.813
95	95	0.88
96	96	0.749
97	97	0.605
98	98	0.00588
99	99	0.312

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11870

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103744 liposarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0103744 (liposarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005621
+|accession_numbers=CAGE;DRX007920;DRR008792;DRZ000217;DRZ001602;DRZ011567;DRZ012952
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:124873852..124873881,-!p3@NCOR2!1.87!416.09!NCOR2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.84!68.33!HOXC5;;chr2:176969228..176969260,+!p1@HOXD11!1.75!55.55!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.66!50.26!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!1.64!470.95!NCOR2;;chr6:45296048..45296082,+!p1@RUNX2!1.55!39.02!RUNX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.57!ZBED1;;chr1:197886461..197886558,+!p1@LHX9!1.51!31.52!LHX9;;chr2:176969179..176969226,+!p2@HOXD11!1.50!30.33!HOXD11;;chr6:134210243..134210257,+!p1@TCF21!1.47!28.45!TCF21;;chr8:25902876..25902936,-!p1@EBF2!1.44!26.58!EBF2;;chr7:27192185..27192209,-!p1@HOXA3!1.33!20.62!HOXA3;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.76!ZFP106;;chr8:40755333..40755352,-!p1@ZMAT4!1.28!18.23!ZMAT4;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.04!HOXB6;;chr2:119605214..119605230,-!p1@EN1!1.26!17.04!EN1;;chr10:8096772..8096787,+!p2@GATA3!1.24!19.42!GATA3;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.79!CREB3L1;;chr17:46690839..46690884,-!p1@HOXB8!1.23!15.85!HOXB8;;chr4:111558135..111558198,-!p2@PITX2!1.20!14.99!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.48!HOXC5;;chr21:36421535..36421610,-!p2@RUNX1!1.18!49.58!RUNX1;;chr12:124873824..124873833,-!p19@NCOR2!1.18!13.97!NCOR2;;chr13:74708029..74708077,-!p2@KLF12!1.15!37.66!KLF12;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.85!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!1.09!231.22!SNAI2;;chr10:8096631..8096660,+!p1@GATA3!1.09!13.63!GATA3;;chr7:27205136..27205164,-!p1@HOXA9!1.09!11.42!HOXA9;;chr1:170632250..170632277,+!p7@PRRX1!1.09!11.42!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!1.08!70.88!SNAI2;;chr7:27224842..27224872,-!p1@HOXA11!1.08!10.90!HOXA11;;chr6:10412600..10412637,-!p1@TFAP2A!1.07!17.89!TFAP2A;;chr12:54402745..54402788,+!p1@HOXC8!1.07!10.73!HOXC8;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!17.04!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.51!FOXC2;;chr1:170633348..170633399,+!p2@PRRX1!1.02!13.12!PRRX1;;chr3:147111198..147111225,+!p4@ZIC1!1.00!9.03!ZIC1;;chr12:115122318..115122331,-!p2@TBX3!0.99!8.69!TBX3;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.52!TBX20;;chr2:200322654..200322707,-!p2@SATB2!0.97!12.27!SATB2;;chr3:157823517..157823562,-!p1@SHOX2!0.97!8.86!SHOX2;;chr2:176969097..176969109,+!p3@HOXD11!0.97!8.35!HOXD11;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.35!HOXC9;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.47!ZFPM2;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.46!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.20!PRRX1;;chr2:176969124..176969155,+!p5@HOXD11!0.95!8.01!HOXD11;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.42!HOXB7;;chr3:71630980..71631110,-!p3@FOXP1!0.93!27.09!FOXP1;;chr10:131762504..131762555,-!p1@EBF3!0.93!7.50!EBF3;;chr17:46691732..46691766,-!p4@HOXB8!0.93!7.50!HOXB8;;chr6:28321971..28321995,-!p1@ZNF323!0.93!7.50!ZNF323;;chr17:46687959..46688007,-!p2@HOXB7!0.92!10.39!HOXB7;;chr15:96869255..96869291,+!p6@NR2F2!0.91!13.29!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.91!8.86!FOXF1;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.16!HOXD8;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.16!SIX2;;chr7:27153454..27153469,-!p2@HOXA3!0.91!7.16!HOXA3;;chr12:54402790..54402805,+!p2@HOXC8!0.90!6.99!HOXC8;;chr12:115121962..115121987,-!p1@TBX3!0.89!60.15!TBX3;;chr3:147127142..147127168,+!p1@ZIC1!0.89!6.82!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!0.88!31.69!FOXD1;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.74!OSR1;;chr16:54320617..54320643,-!p3@IRX3!0.87!8.35!IRX3;;chr3:147111231..147111281,+!p3@ZIC1!0.87!6.47!ZIC1;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.23!TWIST1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.48!HOXB2;;chr7:27205106..27205134,-!p2@HOXA9!0.86!6.30!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.82!PRRX1;;chr2:200323414..200323455,-!p1@SATB2!0.84!13.29!SATB2;;chr19:1592828..1592910,-!p2@MBD3!0.83!48.90!MBD3;;chr2:71127699..71127744,+!p1@VAX2!0.83!12.44!VAX2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.03!HOXB2;;chr2:119604456..119604501,-!p2@EN1!0.82!5.62!EN1;;chr12:80085255..80085284,-!p9@PAWR!0.81!8.18!PAWR;;chr10:8095593..8095625,+!p3@GATA3!0.81!6.47!GATA3;;chr7:27142290..27142310,-!p1@HOXA2!0.79!5.11!HOXA2;;chr6:144329384..144329405,-!p1@PLAGL1!0.77!62.02!PLAGL1;;chr19:4066803..4066886,-!p1@ZBTB7A!0.77!57.93!ZBTB7A;;chr8:77593474..77593612,+!p1@ZFHX4!0.77!22.49!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.77!16.53!TBX2;;chr7:27196267..27196311,-!p1@HOXA7!0.77!4.94!HOXA7;;chr7:19157043..19157088,-!p2@TWIST1!0.76!12.95!TWIST1;;chr3:178789522..178789564,-!p2@ZMAT3!0.75!37.66!ZMAT3;;chr5:72744445..72744466,-!p2@FOXD1!0.75!8.18!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.81!MLLT11;;chr19:4067039..4067064,-!p3@ZBTB7A!0.74!14.31!ZBTB7A;;chr19:31840130..31840160,-!p2@TSHZ3!0.74!7.33!TSHZ3;;chr16:54320158..54320200,-!p5@IRX3!0.74!6.82!IRX3;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.53!MEIS1;;chr8:67525443..67525459,-!p2@MYBL1!0.73!6.82!MYBL1;;chr9:16870659..16870675,-!p2@BNC2!0.73!5.45!BNC2;;chr5:139492456..139492489,+!p7@PURA!0.73!4.43!PURA;;chr1:119530493..119530572,-!p1@TBX15!0.73!4.43!TBX15;;chr1:170632477..170632506,+!p6@PRRX1!0.73!4.43!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.43!DLX1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.72!42.26!ZBTB7A;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.94!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.62!DRAP1;;chr13:74707894..74707947,-!p6@KLF12!0.72!4.77!KLF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.26!PKNOX2;;chr7:27224795..27224840,-!p2@HOXA11!0.72!4.26!HOXA11;;chr6:45390025..45390076,+!p2@RUNX2!0.71!10.73!RUNX2;;chr11:65686802..65686818,+!p6@DRAP1!0.71!7.67!DRAP1;;chr21:36259445..36259519,-!p4@RUNX1!0.70!12.27!RUNX1;;chr12:124827609..124827643,-!p9@NCOR2!0.69!5.96!NCOR2;;chr15:96869292..96869320,+!p15@NR2F2!0.69!5.96!NR2F2;;chr7:27195867..27195893,-!p3@HOXA7!0.69!3.92!HOXA7;;chr12:69753448..69753577,+!p1@YEATS4!0.68!87.07!YEATS4;;chr19:50529247..50529296,+!p1@ZNF473!0.68!28.11!ZNF473;;chr2:121493425..121493474,+!p1@GLI2!0.68!9.20!GLI2;;chr2:74730430..74730451,-!p1@LBX2!0.68!6.65!LBX2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.68!6.47!ZBTB7A;;chr12:54402729..54402743,+!p3@HOXC8!0.68!3.75!HOXC8;;chr7:27196217..27196246,-!p2@HOXA7!0.68!3.75!HOXA7;;chr19:1592714..1592762,-!p1@MBD3!0.67!32.03!MBD3;;chr7:150946015..150946070,-!p3@SMARCD3!0.67!8.69!SMARCD3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.26!HOXB2;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.58!PRRX1;;chr21:36421347..36421380,-!p8@RUNX1!0.66!3.58!RUNX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.66!3.58!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.58!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.66!3.58!DLX1;;chr5:321810..321877,+!p1@AHRR!0.65!12.61!AHRR;;chr7:4815238..4815327,+!p1@KIAA0415!0.64!87.58!AP5Z1;;chr12:122516646..122516668,+!p1@MLXIP!0.64!53.84!MLXIP;;chr13:74708269..74708291,-!p7@KLF12!0.64!4.77!KLF12;;chr12:115122303..115122314,-!p6@TBX3!0.64!3.41!TBX3;;chr3:147127177..147127194,+!p2@ZIC1!0.64!3.41!ZIC1;;chr17:45928443..45928473,-!p2@SP6!0.64!3.41!SP6;;chr1:170632683..170632696,+!p12@PRRX1!0.64!3.41!PRRX1;;chr14:90085458..90085557,-!p1@FOXN3!0.63!40.21!FOXN3;;chr18:53257027..53257052,-!p3@TCF4!0.63!15.16!TCF4;;chr11:706938..707008,-!p3@DEAF1!0.63!4.26!DEAF1;;chr13:74708246..74708264,-!p8@KLF12!0.63!3.75!KLF12;;chr9:16728327..16728338,-!p5@BNC2!0.63!3.24!BNC2;;chr1:170632439..170632465,+!p11@PRRX1!0.63!3.24!PRRX1;;chr16:54320646..54320672,-!p2@IRX3!0.62!5.28!IRX3;;chr3:114343768..114343822,-!p1@ZBTB20!0.61!15.68!ZBTB20;;chr7:150945754..150945789,-!p2@SMARCD3!0.61!10.90!SMARCD3;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.54!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.61!6.65!HOXA1;;chr6:45390002..45390023,+!p6@RUNX2!0.61!5.79!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!0.61!5.79!TBX2;;chr18:53257001..53257015,-!p5@TCF4!0.61!5.79!TCF4;;chr6:45390077..45390105,+!p9@RUNX2!0.61!4.09!RUNX2;;chr6:10412392..10412409,-!p4@TFAP2A!0.61!3.58!TFAP2A;;chr18:53068911..53068935,-!p4@TCF4!0.61!3.58!TCF4;;chr16:31076332..31076388,-!p3@ZNF668!0.61!3.07!ZNF668;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.07!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!0.61!3.07!HOXB13;;chr6:45296191..45296203,+!p13@RUNX2!0.61!3.07!RUNX2;;chr7:27183291..27183324,-!p1@HOXA5!0.61!3.07!HOXA5;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.07!SIX2;;chr2:74726710..74726736,-!p3@LBX2!0.61!3.07!LBX2;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.41!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.59!4.77!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.59!3.92!TFAP2C;;chr7:27213893..27213954,-!p1@HOXA10!0.59!2.90!HOXA10;;chr12:54410948..54410992,+!p3@HOXC5!0.59!2.90!HOXC5;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.90!RFX8;;chr16:86600870..86600921,+!p2@FOXC2!0.59!2.90!FOXC2;;chr14:89029366..89029425,+!p1@ZC3H14!0.58!81.28!ZC3H14;;chr11:65687362..65687436,+!p3@DRAP1!0.58!15.16!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!12.78!FOSL1;;chr17:38256799..38256815,-!p3@NR1D1!0.58!5.62!NR1D1;;chr2:28615716..28615733,+!p1@FOSL2!0.57!159.48!FOSL2;;chr12:80084333..80084380,-!p4@PAWR!0.57!15.85!PAWR;;chr9:2158443..2158481,+!p2@SMARCA2!0.57!9.03!SMARCA2;;chr13:74708475..74708499,-!p5@KLF12!0.57!7.16!KLF12;;chr3:114343826..114343869,-!p4@ZBTB20!0.57!6.13!ZBTB20;;chr5:43067636..43067674,+!p6@ZNF131!0.57!3.92!ZNF131;;chr17:46675420..46675465,-!p3@HOXB6!0.57!3.24!HOXB6;;chr3:157824001..157824078,-!p2@SHOX2!0.57!2.73!SHOX2;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.73!PRRX1;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.73!NR3C1;;chr7:27169801..27169844,-!p2@HOXA4!0.57!2.73!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.57!2.73!HOXA5;;chr1:211433275..211433335,+!p2@RCOR3!0.56!9.54!RCOR3;;chr17:59477275..59477286,+!p3@TBX2!0.56!3.75!TBX2;;chr19:4065848..4065909,-!p4@ZBTB7A!0.55!5.62!ZBTB7A;;chr19:13134457..13134462,+!p5@NFIX!0.55!5.11!NFIX;;chr21:36260343..36260402,-!p6@RUNX1!0.55!4.60!RUNX1;;chr6:45390300..45390335,+!p4@RUNX2!0.55!4.43!RUNX2;;chr3:101546827..101546847,+!p2@NFKBIZ!0.55!3.92!NFKBIZ;;chr3:25470156..25470227,+!p2@RARB!0.55!2.56!RARB;;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@@ Line 37: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10782-110G8
 |is_a=EFO:0002091;;FF:0000210;;FF:0103744
 |is_obsolete=
+|library_id=CNhs11870
+|library_id_phase_based=2:CNhs11870
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10782
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10782
 |name=liposarcoma cell line:KMLS-1
 |namespace=FANTOM5
@@ Line 45: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11870,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 60: / Line 77: @@
 |rna_weight_ug=32.77017
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=jcrb0200
 |sample_cell_line=KMLS-1
@@ Line 81: / Line 99: @@
 |top_motifs=EVI1:2.17165339971;NKX3-1:2.01210709223;HMGA1,2:1.97304796213;ALX4:1.56333786549;TAL1_TCF{3,4,12}:1.55215555339;HIF1A:1.42365290997;ZNF384:1.40122415953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37633085799;AIRE:1.34320052414;POU3F1..4:1.28745970509;RXR{A,B,G}:1.2327353161;HOX{A5,B5}:1.21453872189;NR3C1:1.15931973226;ATF6:1.11080649263;NANOG{mouse}:1.01402961755;TBX4,5:0.991847401845;DBP:0.990926045168;RXRA_VDR{dimer}:0.974226508142;PAX4:0.967759201339;TOPORS:0.952757513539;UFEwm:0.952458006037;HSF1,2:0.94604190202;TEAD1:0.891687769119;PDX1:0.841771297911;PAX8:0.839265887598;FOXD3:0.813436815621;IKZF1:0.786520075549;HOX{A4,D4}:0.77301387783;ADNP_IRX_SIX_ZHX:0.768884513646;PITX1..3:0.755628924905;PRDM1:0.737859395628;NR1H4:0.73324314806;EN1,2:0.716961467802;TFAP2{A,C}:0.710008899324;GZF1:0.703420863173;HBP1_HMGB_SSRP1_UBTF:0.700238551302;AHR_ARNT_ARNT2:0.692403371697;GFI1B:0.670152028124;XBP1:0.668284007832;TP53:0.63088813036;PRRX1,2:0.622111095436;ZBTB16:0.615176963674;SOX17:0.600793717104;GTF2A1,2:0.59182392876;HES1:0.586245111218;TFAP2B:0.5708977323;NKX2-2,8:0.569514624064;ARID5B:0.511153153155;MZF1:0.478391451771;TFAP4:0.470180091398;NKX6-1,2:0.466261488957;NFE2L1:0.44635012767;ZNF143:0.426169512184;YY1:0.423301227993;CDC5L:0.411594848961;MTE{core}:0.408076373897;HIC1:0.406215013948;GTF2I:0.404987214104;ZBTB6:0.384394470409;BACH2:0.359601314421;NRF1:0.356381115376;MAZ:0.349779466171;ELK1,4_GABP{A,B1}:0.345173284899;KLF4:0.331275003966;FOXM1:0.325060284397;TLX1..3_NFIC{dimer}:0.318164401083;TFCP2:0.309515936348;PPARG:0.309410132781;NR6A1:0.309295403538;NFATC1..3:0.275650821952;FOXA2:0.27409997908;EBF1:0.269232054195;NKX3-2:0.248540579123;FOXN1:0.243195980433;SPZ1:0.237769925277;SRF:0.236152935519;GFI1:0.221834885862;GLI1..3:0.206907512878;ESR1:0.204232149768;NFE2L2:0.194424472147;SREBF1,2:0.17741283578;TEF:0.166423957094;CDX1,2,4:0.163919649345;MYBL2:0.162954839398;POU6F1:0.160485287489;SMAD1..7,9:0.150266348892;ZNF238:0.142929904997;LEF1_TCF7_TCF7L1,2:0.135433562823;MED-1{core}:0.129781771021;LHX3,4:0.117106059611;FOXL1:0.106462424559;FOSL2:0.102955513109;MYFfamily:0.101983679307;STAT5{A,B}:0.0995118019813;STAT1,3:0.0990687251443;NFE2:0.094864465918;PAX2:0.0874958389586;ZIC1..3:0.0665463406292;CREB1:0.0570730334843;FOXP1:0.0561058023716;ONECUT1,2:0.0463906976993;MAFB:0.0430431729126;GATA4:0.0296019556192;HMX1:0.0264399622254;PBX1:-0.00364995456864;FOS_FOS{B,L1}_JUN{B,D}:-0.0123408895321;IRF1,2:-0.0161523354514;PAX6:-0.0184712956428;REST:-0.0609559262854;NKX2-3_NKX2-5:-0.0861280544892;ZFP161:-0.0990588989026;HNF1A:-0.106058827751;RUNX1..3:-0.115596450386;NKX2-1,4:-0.127222519753;STAT2,4,6:-0.141889475185;PAX1,9:-0.153989924422;BREu{core}:-0.160489913786;HLF:-0.161539565331;SOX2:-0.169333877152;NHLH1,2:-0.177804092441;TFDP1:-0.180522738656;GCM1,2:-0.182435183759;E2F1..5:-0.187348382202;POU1F1:-0.20748458227;bHLH_family:-0.208265329847;IKZF2:-0.210967164503;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.229795343058;MYB:-0.247807330669;EGR1..3:-0.259363450329;SP1:-0.319558755317;ZNF148:-0.333937175166;OCT4_SOX2{dimer}:-0.339976011498;PATZ1:-0.351519179017;HNF4A_NR2F1,2:-0.35644285777;ELF1,2,4:-0.362134305906;ATF5_CREB3:-0.364548629838;NFY{A,B,C}:-0.370429293417;XCPE1{core}:-0.370868441662;MEF2{A,B,C,D}:-0.384528052805;NFKB1_REL_RELA:-0.408277469932;SOX{8,9,10}:-0.412389274392;MTF1:-0.422906911623;RREB1:-0.430572825295;SPI1:-0.44421422114;DMAP1_NCOR{1,2}_SMARC:-0.456769999035;PAX3,7:-0.480310846781;RFX1:-0.484419695699;ATF2:-0.498803422222;JUN:-0.499255705199;SPIB:-0.504222143472;ALX1:-0.515621313806;CRX:-0.522882923762;AR:-0.52362256466;TGIF1:-0.533198674107;IRF7:-0.539686569081;TLX2:-0.544476050606;FOXQ1:-0.610746990962;ETS1,2:-0.642580769868;T:-0.65058535752;NFIX:-0.679108273563;CUX2:-0.679175625985;LMO2:-0.728168598592;ESRRA:-0.731230477054;FOXO1,3,4:-0.732304986969;NANOG:-0.753777433492;GATA6:-0.766638017613;RORA:-0.767128120899;HOXA9_MEIS1:-0.772483185669;FOX{D1,D2}:-0.777754691209;HAND1,2:-0.794002213744;TBP:-0.824122389293;EP300:-0.828074750096;ATF4:-0.828318105737;FOX{I1,J2}:-0.841094281639;RBPJ:-0.852860537556;PAX5:-0.887061338005;POU5F1:-0.893597239271;POU2F1..3:-0.912861360235;CEBPA,B_DDIT3:-0.933651588455;FOXP3:-1.0229307021;RFX2..5_RFXANK_RFXAP:-1.03532078937;VSX1,2:-1.05420736869;BPTF:-1.06467511486;FOX{F1,F2,J1}:-1.08454718096;NFIL3:-1.11167778787;NR5A1,2:-1.18081341891;HOX{A6,A7,B6,B7}:-1.18157381954;SNAI1..3:-1.24015095309;ZNF423:-1.27803228021;ZEB1:-1.29413735456;MYOD1:-1.3127963092;SOX5:-1.51575578575
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10782-110G8;search_select_hide=table117:FF:10782-110G8
 }}

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FF:10782-110G8: Difference between revisions

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Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0