FF:10822-111C3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005657 | |||
|accession_numbers=CAGE;DRX007777;DRR008649;DRZ000074;DRZ001459;DRZ011424;DRZ012809 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.60!396.79!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.47!296.96!PLEK;;chr11:111249993..111250006,-!p1@POU2AF1!2.36!229.06!POU2AF1;;chr1:25291475..25291511,-!p2@RUNX3!2.01!102.46!RUNX3;;chr19:50922187..50922204,+!p1@SPIB!2.01!101.80!SPIB;;chr16:85932760..85932775,+!p1@IRF8!1.97!93.35!IRF8;;chr12:103351444..103351461,+!p1@ASCL1!1.97!92.77!ASCL1;;chr3:27763807..27763822,-!p1@EOMES!1.92!82.51!EOMES;;chr17:38020392..38020477,-!p1@IKZF3!1.87!72.41!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.78!59.36!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.74!98.27!RUNX3;;chr2:231090471..231090504,+!p2@SP140!1.72!50.90!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.64!42.69!PLEK;;chr7:28610099..28610113,+!p5@CREB5!1.62!40.72!CREB5;;chr19:36204309..36204335,+!p1@ZBTB32!1.58!36.78!ZBTB32;;chr10:64576105..64576133,-!p1@EGR2!1.52!64.45!EGR2;;chr17:36105042..36105060,-!p1@HNF1B!1.52!31.94!HNF1B;;chr3:27764190..27764208,-!p2@EOMES!1.49!30.13!EOMES;;chr5:88120151..88120177,-!p6@MEF2C!1.47!28.49!MEF2C;;chr8:76319876..76319926,+!p1@HNF4G!1.46!27.75!HNF4G;;chr1:158978768..158978800,+!p8@IFI16!1.46!27.67!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!1.45!39.33!NFATC2;;chr14:75988771..75988826,+!p1@BATF!1.44!35.47!BATF;;chr1:3569072..3569093,+!p1@TP73!1.44!26.68!TP73;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.53!ZBED1;;chr3:189349162..189349207,+!p2@TP63!1.40!24.14!TP63;;chr12:103352277..103352324,+!p2@ASCL1!1.40!23.89!ASCL1;;chr11:61520075..61520136,+!p1@C11orf9!1.38!47.54!C11orf9;;chr7:50348268..50348366,+!p4@IKZF1!1.38!22.74!IKZF1;;chr9:37034469..37034474,-!p1@PAX5!1.36!21.92!PAX5;;chr11:47400078..47400106,-!p1@SPI1!1.34!20.77!SPI1;;chr19:42636586..42636607,-!p1@POU2F2!1.33!55.01!POU2F2;;chr8:72756637..72756664,-!p3@MSC!1.29!21.18!MSC;;chr8:72756667..72756736,-!p2@MSC!1.28!27.75!MSC;;chr4:185395590..185395627,-!p3@IRF2!1.28!22.50!IRF2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.27!24.63!NFKBIZ;;chr17:45810594..45810608,+!p1@TBX21!1.27!17.57!TBX21;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.27!17.49!MEF2B;;chr5:133450365..133450444,+!p1@TCF7!1.23!72.08!TCF7;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.82!EBF1;;chr18:52989031..52989079,-!p2@TCF4!1.20!34.81!TCF4;;chr9:1050331..1050363,+!p1@DMRT2!1.19!14.61!DMRT2;;chr8:76319850..76319870,+!p4@HNF4G!1.17!13.87!HNF4G;;chr13:41593425..41593480,-!p1@ELF1!1.16!84.07!ELF1;;chr5:142780237..142780261,-!p7@NR3C1!1.16!13.46!NR3C1;;chr6:34204973..34204990,+!p4@HMGA1!1.15!171.75!HMGA1;;chr14:75988831..75988847,+!p2@BATF!1.15!13.22!BATF;;chr7:28610060..28610073,+!p9@CREB5!1.13!12.56!CREB5;;chr8:135614084..135614119,-!p4@ZFAT!1.12!12.32!ZFAT;;chr5:88178983..88179012,-!p1@MEF2C!1.10!89.65!MEF2C;;chr1:170632115..170632136,+!p9@PRRX1!1.09!11.25!PRRX1;;chr19:45579725..45579743,-!p1@ZNF296!1.08!49.51!ZNF296;;chr12:54447599..54447630,+!p3@HOXC4!1.07!13.38!HOXC4;;chr9:126774018..126774055,+!p1@LHX2!1.07!10.76!LHX2;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.13!E2F2;;chr2:214015111..214015179,-!p1@IKZF2!1.06!18.72!IKZF2;;chr7:128577972..128578047,+!p1@IRF5!1.06!16.83!IRF5;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.43!IKZF1;;chr16:85936412..85936431,+!p2@IRF8!1.05!10.26!IRF8;;chr20:42543441..42543497,+!p1@TOX2!1.04!45.24!TOX2;;chr1:38512457..38512474,-!p1@POU3F1!1.03!10.67!POU3F1;;chr7:50344289..50344323,+!p1@IKZF1!1.02!9.36!IKZF1;;chr3:141747950..141748004,-!p7@TFDP2!1.02!9.36!TFDP2;;chr6:135502408..135502459,+!p2@MYB!1.01!10.84!MYB;;chr1:25291620..25291635,-!p4@RUNX3!1.01!9.28!RUNX3;;chr2:214015343..214015366,-!p3@IKZF2!1.01!9.28!IKZF2;;chr10:104155480..104155534,+!p2@NFKB2!1.00!59.69!NFKB2;;chr8:72756063..72756125,-!p1@MSC!1.00!18.47!MSC;;chr7:137620650..137620677,-!p3@CREB3L2!1.00!9.03!CREB3L2;;chr2:68615031..68615055,+!p3@PLEK!1.00!9.03!PLEK;;chr1:92951607..92951661,-!p1@GFI1!1.00!9.03!GFI1;;chr9:126773880..126773895,+!p2@LHX2!1.00!9.03!LHX2;;chr2:231090344..231090361,-!p3@SP110!1.00!8.95!SP110;;chr9:117150254..117150271,-!p1@AKNA!0.99!24.71!AKNA;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.76!ZBTB38;;chr20:62680984..62680999,-!p1@SOX18!0.98!11.58!SOX18;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.54!IKZF1;;chr11:615570..615721,-!p2@IRF7!0.96!16.34!IRF7;;chr8:65492915..65492932,+!p1@BHLHE22!0.96!8.21!BHLHE22;;chr7:137620684..137620711,-!p4@CREB3L2!0.96!8.13!CREB3L2;;chr11:19262421..19262455,-!p3@E2F8!0.96!8.13!E2F8;;chr2:214016254..214016282,-!p7@IKZF2!0.96!8.13!IKZF2;;chr17:1959369..1959388,+!p2@HIC1!0.95!21.35!HIC1;;chr1:170632051..170632081,+!p16@PRRX1!0.95!7.88!PRRX1;;chr17:37934204..37934241,-!p3@IKZF3!0.94!7.80!IKZF3;;chr20:42295713..42295738,+!p2@MYBL2!0.93!45.65!MYBL2;;chr6:41700616..41700664,-!p8@TFEB!0.93!7.55!TFEB;;chr5:142780189..142780223,-!p6@NR3C1!0.92!7.31!NR3C1;;chr20:42295745..42295765,+!p1@MYBL2!0.91!122.00!MYBL2;;chr1:117602932..117602973,+!p1@TTF2!0.91!27.91!TTF2;;chr1:151319654..151319698,-!p2@RFX5!0.91!16.17!RFX5;;chr18:52989001..52989030,-!p10@TCF4!0.91!7.96!TCF4;;chr4:185395633..185395651,-!p2@IRF2!0.90!11.41!IRF2;;chr12:54447637..54447659,+!p4@HOXC4!0.90!6.98!HOXC4;;chr2:70314240..70314256,+!p4@PCBP1!0.89!14.61!PCBP1;;chr16:85936539..85936562,+!p3@IRF8!0.89!6.73!IRF8;;chr1:3569135..3569150,+!p3@TP73!0.89!6.73!TP73;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.65!MNX1;;chr8:135614120..135614149,-!p5@ZFAT!0.88!6.57!ZFAT;;chr1:158979686..158979745,+!p1@IFI16!0.87!224.30!IFI16;;chr1:167298300..167298319,+!p2@POU2F1!0.87!6.40!POU2F1;;chr6:44233252..44233296,-!p1@NFKBIE!0.86!65.60!NFKBIE;;chr10:104154246..104154347,+!p3@NFKB2!0.86!40.56!NFKB2;;chr17:38020557..38020572,-!p4@IKZF3!0.86!6.24!IKZF3;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.48!BRCA1;;chr19:42627037..42627084,-!p3@POU2F2!0.85!6.08!POU2F2;;chr17:41623692..41623715,-!p1@ETV4!0.84!26.93!ETV4;;chr6:106546731..106546755,+!p5@PRDM1!0.84!5.99!PRDM1;;chr17:70117153..70117174,+!p1@SOX9!0.83!63.14!SOX9;;chr6:126240380..126240430,+!p2@NCOA7!0.83!15.85!NCOA7;;chr6:144385698..144385742,-!p2@PLAGL1!0.83!7.14!PLAGL1;;chr1:201979703..201979721,+!p2@ELF3!0.83!5.83!ELF3;;chr1:156460436..156460462,-!p7@MEF2D!0.83!5.75!MEF2D;;chr5:138609782..138609826,+!p5@MATR3!0.82!38.67!MATR3;;chr12:11802753..11802834,+!p2@ETV6!0.82!29.23!ETV6;;chr12:54785074..54785122,-!p2@ZNF385A!0.82!8.95!ZNF385A;;chr12:103352326..103352351,+!p3@ASCL1!0.82!5.58!ASCL1;;chr18:42260840..42260860,+!p2@SETBP1!0.82!5.58!SETBP1;;chr9:16728161..16728185,-!p4@BNC2!0.82!5.58!BNC2;;chr14:74226961..74227020,-!p1@C14orf43!0.81!39.16!C14orf43;;chr6:20402102..20402152,+!p1@E2F3!0.81!24.06!E2F3;;chr19:45252008..45252024,+!p2@BCL3!0.81!19.13!BCL3;;chr19:50432453..50432468,+!p1@ATF5!0.80!325.69!ATF5;;chr9:20622444..20622468,-!p2@MLLT3!0.80!18.47!MLLT3;;chr17:46655730..46655791,-!p1@HOXB4!0.80!13.96!HOXB4;;chr1:27023752..27023799,+!p4@ARID1A!0.80!7.22!ARID1A;;chr5:142780280..142780294,-!p16@NR3C1!0.80!5.34!NR3C1;;chr2:214013461..214013517,-!p6@IKZF2!0.80!5.25!IKZF2;;chr17:40440359..40440386,+!p4@STAT5A!0.80!5.25!STAT5A;;chr9:2015335..2015370,+!p1@SMARCA2!0.79!68.47!SMARCA2;;chr3:141747459..141747475,-!p1@TFDP2!0.79!47.21!TFDP2;;chr6:135502501..135502546,+!p1@MYB!0.79!6.40!MYB;;chr8:76452129..76452159,+!p5@HNF4G!0.79!5.17!HNF4G;;chr2:68615063..68615089,+!p4@PLEK!0.79!5.17!PLEK;;chr1:3568928..3568946,+!p4@TP73!0.79!5.17!TP73;;chr1:6884943..6884957,+!p7@CAMTA1!0.79!5.17!CAMTA1;;chr18:52989565..52989623,-!p9@TCF4!0.78!6.57!TCF4;;chr9:1050449..1050468,+!p2@DMRT2!0.78!5.09!DMRT2;;chr5:158526756..158526797,-!p3@EBF1!0.78!5.01!EBF1;;chr9:128509878..128509902,+!p5@PBX3!0.78!5.01!PBX3;;chr5:88179017..88179046,-!p2@MEF2C!0.77!21.10!MEF2C;;chr8:22550982..22550999,-!p1@EGR3!0.77!15.02!EGR3;;chr1:212873267..212873332,-!p1@BATF3!0.77!6.73!BATF3;;chr8:76452097..76452126,+!p2@HNF4G!0.77!4.93!HNF4G;;chr1:3569101..3569115,+!p2@TP73!0.77!4.84!TP73;;chr2:97202480..97202499,+!p1@ARID5A!0.76!52.87!ARID5A;;chr7:64126503..64126528,+!p1@ZNF107!0.76!37.03!ZNF107;;chr15:74833584..74833626,+!p1@ARID3B!0.76!11.74!ARID3B;;chr6:106546808..106546833,+!p3@PRDM1!0.76!6.16!PRDM1;;chr6:126240442..126240459,+!p4@NCOA7!0.76!6.16!NCOA7;;chr9:2015306..2015323,+!p3@SMARCA2!0.75!13.14!SMARCA2;;chr14:24630902..24630948,+!p2@IRF9!0.75!5.75!IRF9;;chr9:37034258..37034270,-!p3@PAX5!0.75!4.68!PAX5;;chr17:36105074..36105086,-!p2@HNF1B!0.75!4.68!HNF1B;;chr19:42636625..42636632,-!p2@POU2F2!0.75!4.60!POU2F2;;chr1:170632137..170632172,+!p10@PRRX1!0.75!4.60!PRRX1;;chr1:3568870..3568881,+!p5@TP73!0.75!4.60!TP73;;chr2:231084659..231084721,-!p1@SP110!0.74!116.83!SP110;;chr16:31885093..31885165,+!p1@ZNF267!0.74!77.01!ZNF267;;chr6:43337124..43337144,-!p4@ZNF318!0.74!6.73!ZNF318;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.32!PRRX1;;chr1:170632028..170632043,+!p20@PRRX1!0.74!4.52!PRRX1;;chr17:41739283..41739297,-!p1@MEOX1!0.74!4.52!MEOX1;;chr19:926001..926046,+!p1@ARID3A!0.73!16.75!ARID3A;;chr19:19729477..19729542,-!p1@PBX4!0.73!10.02!PBX4;;chr12:54447219..54447237,+!p6@HOXC4!0.73!4.35!HOXC4;;chr19:4153613..4153652,+!p1@CREB3L3!0.73!4.35!CREB3L3;;chr1:3568961..3568973,+!p6@TP73!0.73!4.35!TP73;;chr4:146859626..146859669,-!p2@ZNF827!0.72!6.40!ZNF827;;chr3:189348969..189349018,+!p4@TP63!0.72!4.27!TP63;;chr1:25291648..25291665,-!p7@RUNX3!0.71!4.19!RUNX3;;chr1:3568889..3568900,+!p7@TP73!0.71!4.11!TP73;;chr3:141103634..141103665,+!p18@ZBTB38!0.71!4.11!ZBTB38;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.70!20.61!TAL1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.40!ZBTB38;;chr11:19262461..19262476,-!p5@E2F8!0.70!4.02!E2F8;;chr6:43337180..43337244,-!p1@ZNF318!0.69!16.83!ZNF318;;chr17:36104873..36104903,-!p3@HNF1B!0.69!3.86!HNF1B;;chr14:35873947..35873965,-!p1@NFKBIA!0.68!280.70!NFKBIA;;chr9:20622478..20622525,-!p1@MLLT3!0.68!34.24!MLLT3;;chr15:60884706..60884743,-!p1@RORA!0.68!22.17!RORA;;chr11:19263160..19263176,-!p1@E2F8!0.68!4.60!E2F8;;chr6:20402070..20402082,+!p5@E2F3!0.68!4.52!E2F3;;chr8:135613895..135613921,-!p8@ZFAT!0.68!3.78!ZFAT;;chr2:8822176..8822196,+!p1@ID2!0.67!600.98!ID2;;chr14:55493763..55493824,-!p1@WDHD1!0.67!32.18!WDHD1;;chr4:87857491..87857519,+!p10@AFF1!0.67!5.25!AFF1;;c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| |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.60!396.79!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.47!296.96!PLEK;;chr11:111249993..111250006,-!p1@POU2AF1!2.36!229.06!POU2AF1;;chr1:25291475..25291511,-!p2@RUNX3!2.01!102.46!RUNX3;;chr19:50922187..50922204,+!p1@SPIB!2.01!101.80!SPIB;;chr16:85932760..85932775,+!p1@IRF8!1.97!93.35!IRF8;;chr12:103351444..103351461,+!p1@ASCL1!1.97!92.77!ASCL1;;chr3:27763807..27763822,-!p1@EOMES!1.92!82.51!EOMES;;chr17:38020392..38020477,-!p1@IKZF3!1.87!72.41!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.78!59.36!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.74!98.27!RUNX3;;chr2:231090471..231090504,+!p2@SP140!1.72!50.90!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.64!42.69!PLEK;;chr7:28610099..28610113,+!p5@CREB5!1.62!40.72!CREB5;;chr19:36204309..36204335,+!p1@ZBTB32!1.58!36.78!ZBTB32;;chr10:64576105..64576133,-!p1@EGR2!1.52!64.45!EGR2;;chr17:36105042..36105060,-!p1@HNF1B!1.52!31.94!HNF1B;;chr3:27764190..27764208,-!p2@EOMES!1.49!30.13!EOMES;;chr5:88120151..88120177,-!p6@MEF2C!1.47!28.49!MEF2C;;chr8:76319876..76319926,+!p1@HNF4G!1.46!27.75!HNF4G;;chr1:158978768..158978800,+!p8@IFI16!1.46!27.67!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!1.45!39.33!NFATC2;;chr14:75988771..75988826,+!p1@BATF!1.44!35.47!BATF;;chr1:3569072..3569093,+!p1@TP73!1.44!26.68!TP73;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.53!ZBED1;;chr3:189349162..189349207,+!p2@TP63!1.40!24.14!TP63;;chr12:103352277..103352324,+!p2@ASCL1!1.40!23.89!ASCL1;;chr11:61520075..61520136,+!p1@C11orf9!1.38!47.54!C11orf9;;chr7:50348268..50348366,+!p4@IKZF1!1.38!22.74!IKZF1;;chr9:37034469..37034474,-!p1@PAX5!1.36!21.92!PAX5;;chr11:47400078..47400106,-!p1@SPI1!1.34!20.77!SPI1;;chr19:42636586..42636607,-!p1@POU2F2!1.33!55.01!POU2F2;;chr8:72756637..72756664,-!p3@MSC!1.29!21.18!MSC;;chr8:72756667..72756736,-!p2@MSC!1.28!27.75!MSC;;chr4:185395590..185395627,-!p3@IRF2!1.28!22.50!IRF2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.27!24.63!NFKBIZ;;chr17:45810594..45810608,+!p1@TBX21!1.27!17.57!TBX21;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.27!17.49!MEF2B;;chr5:133450365..133450444,+!p1@TCF7!1.23!72.08!TCF7;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.82!EBF1;;chr18:52989031..52989079,-!p2@TCF4!1.20!34.81!TCF4;;chr9:1050331..1050363,+!p1@DMRT2!1.19!14.61!DMRT2;;chr8:76319850..76319870,+!p4@HNF4G!1.17!13.87!HNF4G;;chr13:41593425..41593480,-!p1@ELF1!1.16!84.07!ELF1;;chr5:142780237..142780261,-!p7@NR3C1!1.16!13.46!NR3C1;;chr6:34204973..34204990,+!p4@HMGA1!1.15!171.75!HMGA1;;chr14:75988831..75988847,+!p2@BATF!1.15!13.22!BATF;;chr7:28610060..28610073,+!p9@CREB5!1.13!12.56!CREB5;;chr8:135614084..135614119,-!p4@ZFAT!1.12!12.32!ZFAT;;chr5:88178983..88179012,-!p1@MEF2C!1.10!89.65!MEF2C;;chr1:170632115..170632136,+!p9@PRRX1!1.09!11.25!PRRX1;;chr19:45579725..45579743,-!p1@ZNF296!1.08!49.51!ZNF296;;chr12:54447599..54447630,+!p3@HOXC4!1.07!13.38!HOXC4;;chr9:126774018..126774055,+!p1@LHX2!1.07!10.76!LHX2;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.13!E2F2;;chr2:214015111..214015179,-!p1@IKZF2!1.06!18.72!IKZF2;;chr7:128577972..128578047,+!p1@IRF5!1.06!16.83!IRF5;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.43!IKZF1;;chr16:85936412..85936431,+!p2@IRF8!1.05!10.26!IRF8;;chr20:42543441..42543497,+!p1@TOX2!1.04!45.24!TOX2;;chr1:38512457..38512474,-!p1@POU3F1!1.03!10.67!POU3F1;;chr7:50344289..50344323,+!p1@IKZF1!1.02!9.36!IKZF1;;chr3:141747950..141748004,-!p7@TFDP2!1.02!9.36!TFDP2;;chr6:135502408..135502459,+!p2@MYB!1.01!10.84!MYB;;chr1:25291620..25291635,-!p4@RUNX3!1.01!9.28!RUNX3;;chr2:214015343..214015366,-!p3@IKZF2!1.01!9.28!IKZF2;;chr10:104155480..104155534,+!p2@NFKB2!1.00!59.69!NFKB2;;chr8:72756063..72756125,-!p1@MSC!1.00!18.47!MSC;;chr7:137620650..137620677,-!p3@CREB3L2!1.00!9.03!CREB3L2;;chr2:68615031..68615055,+!p3@PLEK!1.00!9.03!PLEK;;chr1:92951607..92951661,-!p1@GFI1!1.00!9.03!GFI1;;chr9:126773880..126773895,+!p2@LHX2!1.00!9.03!LHX2;;chr2:231090344..231090361,-!p3@SP110!1.00!8.95!SP110;;chr9:117150254..117150271,-!p1@AKNA!0.99!24.71!AKNA;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.76!ZBTB38;;chr20:62680984..62680999,-!p1@SOX18!0.98!11.58!SOX18;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.54!IKZF1;;chr11:615570..615721,-!p2@IRF7!0.96!16.34!IRF7;;chr8:65492915..65492932,+!p1@BHLHE22!0.96!8.21!BHLHE22;;chr7:137620684..137620711,-!p4@CREB3L2!0.96!8.13!CREB3L2;;chr11:19262421..19262455,-!p3@E2F8!0.96!8.13!E2F8;;chr2:214016254..214016282,-!p7@IKZF2!0.96!8.13!IKZF2;;chr17:1959369..1959388,+!p2@HIC1!0.95!21.35!HIC1;;chr1:170632051..170632081,+!p16@PRRX1!0.95!7.88!PRRX1;;chr17:37934204..37934241,-!p3@IKZF3!0.94!7.80!IKZF3;;chr20:42295713..42295738,+!p2@MYBL2!0.93!45.65!MYBL2;;chr6:41700616..41700664,-!p8@TFEB!0.93!7.55!TFEB;;chr5:142780189..142780223,-!p6@NR3C1!0.92!7.31!NR3C1;;chr20:42295745..42295765,+!p1@MYBL2!0.91!122.00!MYBL2;;chr1:117602932..117602973,+!p1@TTF2!0.91!27.91!TTF2;;chr1:151319654..151319698,-!p2@RFX5!0.91!16.17!RFX5;;chr18:52989001..52989030,-!p10@TCF4!0.91!7.96!TCF4;;chr4:185395633..185395651,-!p2@IRF2!0.90!11.41!IRF2;;chr12:54447637..54447659,+!p4@HOXC4!0.90!6.98!HOXC4;;chr2:70314240..70314256,+!p4@PCBP1!0.89!14.61!PCBP1;;chr16:85936539..85936562,+!p3@IRF8!0.89!6.73!IRF8;;chr1:3569135..3569150,+!p3@TP73!0.89!6.73!TP73;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.65!MNX1;;chr8:135614120..135614149,-!p5@ZFAT!0.88!6.57!ZFAT;;chr1:158979686..158979745,+!p1@IFI16!0.87!224.30!IFI16;;chr1:167298300..167298319,+!p2@POU2F1!0.87!6.40!POU2F1;;chr6:44233252..44233296,-!p1@NFKBIE!0.86!65.60!NFKBIE;;chr10:104154246..104154347,+!p3@NFKB2!0.86!40.56!NFKB2;;chr17:38020557..38020572,-!p4@IKZF3!0.86!6.24!IKZF3;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.48!BRCA1;;chr19:42627037..42627084,-!p3@POU2F2!0.85!6.08!POU2F2;;chr17:41623692..41623715,-!p1@ETV4!0.84!26.93!ETV4;;chr6:106546731..106546755,+!p5@PRDM1!0.84!5.99!PRDM1;;chr17:70117153..70117174,+!p1@SOX9!0.83!63.14!SOX9;;chr6:126240380..126240430,+!p2@NCOA7!0.83!15.85!NCOA7;;chr6:144385698..144385742,-!p2@PLAGL1!0.83!7.14!PLAGL1;;chr1:201979703..201979721,+!p2@ELF3!0.83!5.83!ELF3;;chr1:156460436..156460462,-!p7@MEF2D!0.83!5.75!MEF2D;;chr5:138609782..138609826,+!p5@MATR3!0.82!38.67!MATR3;;chr12:11802753..11802834,+!p2@ETV6!0.82!29.23!ETV6;;chr12:54785074..54785122,-!p2@ZNF385A!0.82!8.95!ZNF385A;;chr12:103352326..103352351,+!p3@ASCL1!0.82!5.58!ASCL1;;chr18:42260840..42260860,+!p2@SETBP1!0.82!5.58!SETBP1;;chr9:16728161..16728185,-!p4@BNC2!0.82!5.58!BNC2;;chr14:74226961..74227020,-!p1@C14orf43!0.81!39.16!C14orf43;;chr6:20402102..20402152,+!p1@E2F3!0.81!24.06!E2F3;;chr19:45252008..45252024,+!p2@BCL3!0.81!19.13!BCL3;;chr19:50432453..50432468,+!p1@ATF5!0.80!325.69!ATF5;;chr9:20622444..20622468,-!p2@MLLT3!0.80!18.47!MLLT3;;chr17:46655730..46655791,-!p1@HOXB4!0.80!13.96!HOXB4;;chr1:27023752..27023799,+!p4@ARID1A!0.80!7.22!ARID1A;;chr5:142780280..142780294,-!p16@NR3C1!0.80!5.34!NR3C1;;chr2:214013461..214013517,-!p6@IKZF2!0.80!5.25!IKZF2;;chr17:40440359..40440386,+!p4@STAT5A!0.80!5.25!STAT5A;;chr9:2015335..2015370,+!p1@SMARCA2!0.79!68.47!SMARCA2;;chr3:141747459..141747475,-!p1@TFDP2!0.79!47.21!TFDP2;;chr6:135502501..135502546,+!p1@MYB!0.79!6.40!MYB;;chr8:76452129..76452159,+!p5@HNF4G!0.79!5.17!HNF4G;;chr2:68615063..68615089,+!p4@PLEK!0.79!5.17!PLEK;;chr1:3568928..3568946,+!p4@TP73!0.79!5.17!TP73;;chr1:6884943..6884957,+!p7@CAMTA1!0.79!5.17!CAMTA1;;chr18:52989565..52989623,-!p9@TCF4!0.78!6.57!TCF4;;chr9:1050449..1050468,+!p2@DMRT2!0.78!5.09!DMRT2;;chr5:158526756..158526797,-!p3@EBF1!0.78!5.01!EBF1;;chr9:128509878..128509902,+!p5@PBX3!0.78!5.01!PBX3;;chr5:88179017..88179046,-!p2@MEF2C!0.77!21.10!MEF2C;;chr8:22550982..22550999,-!p1@EGR3!0.77!15.02!EGR3;;chr1:212873267..212873332,-!p1@BATF3!0.77!6.73!BATF3;;chr8:76452097..76452126,+!p2@HNF4G!0.77!4.93!HNF4G;;chr1:3569101..3569115,+!p2@TP73!0.77!4.84!TP73;;chr2:97202480..97202499,+!p1@ARID5A!0.76!52.87!ARID5A;;chr7:64126503..64126528,+!p1@ZNF107!0.76!37.03!ZNF107;;chr15:74833584..74833626,+!p1@ARID3B!0.76!11.74!ARID3B;;chr6:106546808..106546833,+!p3@PRDM1!0.76!6.16!PRDM1;;chr6:126240442..126240459,+!p4@NCOA7!0.76!6.16!NCOA7;;chr9:2015306..2015323,+!p3@SMARCA2!0.75!13.14!SMARCA2;;chr14:24630902..24630948,+!p2@IRF9!0.75!5.75!IRF9;;chr9:37034258..37034270,-!p3@PAX5!0.75!4.68!PAX5;;chr17:36105074..36105086,-!p2@HNF1B!0.75!4.68!HNF1B;;chr19:42636625..42636632,-!p2@POU2F2!0.75!4.60!POU2F2;;chr1:170632137..170632172,+!p10@PRRX1!0.75!4.60!PRRX1;;chr1:3568870..3568881,+!p5@TP73!0.75!4.60!TP73;;chr2:231084659..231084721,-!p1@SP110!0.74!116.83!SP110;;chr16:31885093..31885165,+!p1@ZNF267!0.74!77.01!ZNF267;;chr6:43337124..43337144,-!p4@ZNF318!0.74!6.73!ZNF318;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.32!PRRX1;;chr1:170632028..170632043,+!p20@PRRX1!0.74!4.52!PRRX1;;chr17:41739283..41739297,-!p1@MEOX1!0.74!4.52!MEOX1;;chr19:926001..926046,+!p1@ARID3A!0.73!16.75!ARID3A;;chr19:19729477..19729542,-!p1@PBX4!0.73!10.02!PBX4;;chr12:54447219..54447237,+!p6@HOXC4!0.73!4.35!HOXC4;;chr19:4153613..4153652,+!p1@CREB3L3!0.73!4.35!CREB3L3;;chr1:3568961..3568973,+!p6@TP73!0.73!4.35!TP73;;chr4:146859626..146859669,-!p2@ZNF827!0.72!6.40!ZNF827;;chr3:189348969..189349018,+!p4@TP63!0.72!4.27!TP63;;chr1:25291648..25291665,-!p7@RUNX3!0.71!4.19!RUNX3;;chr1:3568889..3568900,+!p7@TP73!0.71!4.11!TP73;;chr3:141103634..141103665,+!p18@ZBTB38!0.71!4.11!ZBTB38;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.70!20.61!TAL1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.40!ZBTB38;;chr11:19262461..19262476,-!p5@E2F8!0.70!4.02!E2F8;;chr6:43337180..43337244,-!p1@ZNF318!0.69!16.83!ZNF318;;chr17:36104873..36104903,-!p3@HNF1B!0.69!3.86!HNF1B;;chr14:35873947..35873965,-!p1@NFKBIA!0.68!280.70!NFKBIA;;chr9:20622478..20622525,-!p1@MLLT3!0.68!34.24!MLLT3;;chr15:60884706..60884743,-!p1@RORA!0.68!22.17!RORA;;chr11:19263160..19263176,-!p1@E2F8!0.68!4.60!E2F8;;chr6:20402070..20402082,+!p5@E2F3!0.68!4.52!E2F3;;chr8:135613895..135613921,-!p8@ZFAT!0.68!3.78!ZFAT;;chr2:8822176..8822196,+!p1@ID2!0.67!600.98!ID2;;chr14:55493763..55493824,-!p1@WDHD1!0.67!32.18!WDHD1;;chr4:87857491..87857519,+!p10@AFF1!0.67!5.25!AFF1;;c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| ||
|ffid_belonging_in_development=CL:0000134,CL:0000051 | |||
|fonse_cell_line=FF:0101035,FF:0101522 | |fonse_cell_line=FF:0101035,FF:0101522 | ||
|fonse_cell_line_closure=FF:0101035,FF:0101522 | |fonse_cell_line_closure=FF:0101035,FF:0101522 | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep2.CNhs12332.10822-111C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep2.CNhs12332.10822-111C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep2.CNhs12332.10822-111C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep2.CNhs12332.10822-111C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep2.CNhs12332.10822-111C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10822-111C3 | |id=FF:10822-111C3 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102062 | |is_a=EFO:0002091;;FF:0000210;;FF:0102062 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12332 | |||
|library_id_phase_based=2:CNhs12332 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10822 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10822 | |||
|name=B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2 | |name=B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12332,LSID913,release011,COMPLETED | |profile_hcage=CNhs12332,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 78: | ||
|rna_weight_ug=51.6635 | |rna_weight_ug=51.6635 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=GM12878 | |sample_cell_line=GM12878 | ||
Line 76: | Line 95: | ||
|sample_note= | |sample_note= | ||
|sample_sex=female | |sample_sex=female | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=HOXA9_MEIS1:2.46827708055;POU2F1..3:2.2824945749;POU5F1:2.0201155114;NFKB1_REL_RELA:1.98254504504;DMAP1_NCOR{1,2}_SMARC:1.76503299187;E2F1..5:1.71910738025;PDX1:1.62546251976;MYB:1.5997475763;NFY{A,B,C}:1.58643844148;PAX6:1.55866308317;ELF1,2,4:1.55181445621;NKX6-1,2:1.54933553356;IRF7:1.49510313753;ELK1,4_GABP{A,B1}:1.47460772221;IRF1,2:1.46668913386;AIRE:1.4199309607;VSX1,2:1.21645265389;TOPORS:1.20843363783;YY1:1.15851616252;CDX1,2,4:1.07172850553;SPI1:1.06381210489;PITX1..3:1.05618570354;RUNX1..3:0.940152062404;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.919831281465;HIF1A:0.899817141961;NRF1:0.835693970747;PAX8:0.828515195219;FOXA2:0.81754910981;SPIB:0.75726288428;PAX3,7:0.728357783781;AHR_ARNT_ARNT2:0.70190316861;OCT4_SOX2{dimer}:0.693011208022;ETS1,2:0.66655498948;ZNF143:0.641278581487;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.63722364481;RBPJ:0.618482444571;SPZ1:0.609489804311;POU1F1:0.599189384278;ZBTB16:0.578706590101;BREu{core}:0.571122174873;FOXP3:0.570876137245;EVI1:0.56281751475;CUX2:0.498689100425;MYOD1:0.477713733436;HNF4A_NR2F1,2:0.472185380488;SNAI1..3:0.46146886368;ZEB1:0.441118523963;GFI1:0.417256894397;NR5A1,2:0.399228278616;STAT1,3:0.399087641675;LMO2:0.394269258785;NKX2-2,8:0.37751233752;ZNF384:0.325108090925;FOXP1:0.311719248387;RORA:0.305224985039;HSF1,2:0.302926364971;HNF1A:0.27321784702;POU3F1..4:0.269500818594;FOXN1:0.258623561881;TFDP1:0.25727759627;PBX1:0.234160543025;RFX2..5_RFXANK_RFXAP:0.205600179072;ESRRA:0.188331353019;FOX{F1,F2,J1}:0.184362507596;ESR1:0.180257491519;NANOG{mouse}:0.176370641435;SOX{8,9,10}:0.171739684084;GATA6:0.164454703001;ATF5_CREB3:0.152456456576;TP53:0.110625715415;PAX4:0.102686404325;HES1:0.0636307982011;EBF1:0.0606688639241;PRRX1,2:0.0576147158661;IKZF2:0.0481094509024;RXRA_VDR{dimer}:0.0384247884114;CREB1:0.0359693117775;ALX4:0.0245585144887;TGIF1:0.0238893267514;CDC5L:0.0184650638678;bHLH_family:0.00791176274905;NKX3-2:-0.0105949834911;PAX2:-0.0253417049777;ARID5B:-0.0451944890788;CRX:-0.0673035273525;SOX5:-0.0696552010571;LHX3,4:-0.114107163925;ATF4:-0.137287420656;PRDM1:-0.185771814873;MEF2{A,B,C,D}:-0.2174610513;NFE2:-0.228282728399;NKX2-3_NKX2-5:-0.236738971768;SRF:-0.252350217833;LEF1_TCF7_TCF7L1,2:-0.26512419674;FOXQ1:-0.268648767937;HOX{A4,D4}:-0.270616741497;BPTF:-0.308831318292;HMGA1,2:-0.335298001327;DBP:-0.34495890564;ALX1:-0.346728581228;NR1H4:-0.361577775012;TLX2:-0.380828577265;HAND1,2:-0.411814836317;NR6A1:-0.415028478442;ADNP_IRX_SIX_ZHX:-0.42850788804;GATA4:-0.435805164735;FOS_FOS{B,L1}_JUN{B,D}:-0.461141958404;NFATC1..3:-0.479898960348;GLI1..3:-0.487374500148;SOX17:-0.488128512461;KLF4:-0.497902774133;AR:-0.507909197774;TFAP4:-0.522348919963;EP300:-0.526916644209;SOX2:-0.526961172944;RXR{A,B,G}:-0.551208393755;ONECUT1,2:-0.564395793677;BACH2:-0.568508721312;FOSL2:-0.577727158933;IKZF1:-0.584731395214;ZFP161:-0.597206598118;HOX{A5,B5}:-0.600566230497;UFEwm:-0.612646250138;GFI1B:-0.630287690181;MYBL2:-0.642990423;EN1,2:-0.646898245869;HOX{A6,A7,B6,B7}:-0.652692797859;NKX2-1,4:-0.666957862082;STAT2,4,6:-0.675326966469;HBP1_HMGB_SSRP1_UBTF:-0.682285429885;CEBPA,B_DDIT3:-0.713471996601;ATF2:-0.738438095994;SMAD1..7,9:-0.740863718286;TEF:-0.742785773565;MZF1:-0.763787037213;NKX3-1:-0.764472017373;ZNF423:-0.769356810364;HLF:-0.791877699918;PAX1,9:-0.816254622583;RREB1:-0.82964787328;GCM1,2:-0.830251683428;ZNF148:-0.84501289566;NHLH1,2:-0.865742369697;TAL1_TCF{3,4,12}:-0.871887048798;NFIL3:-0.882928205655;SREBF1,2:-0.88355580406;EGR1..3:-0.899805371269;MYFfamily:-0.914936293499;FOXD3:-0.922252161891;PPARG:-0.922446081413;ZIC1..3:-0.931495652885;NFIX:-0.937377091175;MTE{core}:-0.945769286306;TBX4,5:-0.947563594796;MTF1:-0.986591721146;STAT5{A,B}:-0.991176055539;TBP:-0.99474022716;RFX1:-1.00381525853;FOXM1:-1.00415551197;REST:-1.0455776192;FOXO1,3,4:-1.04882307684;GTF2I:-1.0626962157;XCPE1{core}:-1.08761652811;T:-1.09796123102;JUN:-1.09918960581;NFE2L2:-1.13187900825;HIC1:-1.13516561748;PAX5:-1.19853631231;MED-1{core}:-1.25203379674;XBP1:-1.25698385602;TFCP2:-1.27478979339;GTF2A1,2:-1.28417445597;NANOG:-1.2898107102;ZNF238:-1.29284524731;NFE2L1:-1.29417361869;TFAP2{A,C}:-1.29535054719;ATF6:-1.31519175134;HMX1:-1.31692243834;MAFB:-1.31839609304;PATZ1:-1.39642354822;TLX1..3_NFIC{dimer}:-1.44687983091;GZF1:-1.49128341327;MAZ:-1.5042513463;POU6F1:-1.61154144892;NR3C1:-1.6266388791;TEAD1:-1.64904270587;ZBTB6:-1.66319844207;FOX{D1,D2}:-1.72092736549;SP1:-1.78078064422;TFAP2B:-1.808530438;FOX{I1,J2}:-2.14310516309;FOXL1:-2.5946263389 | |top_motifs=HOXA9_MEIS1:2.46827708055;POU2F1..3:2.2824945749;POU5F1:2.0201155114;NFKB1_REL_RELA:1.98254504504;DMAP1_NCOR{1,2}_SMARC:1.76503299187;E2F1..5:1.71910738025;PDX1:1.62546251976;MYB:1.5997475763;NFY{A,B,C}:1.58643844148;PAX6:1.55866308317;ELF1,2,4:1.55181445621;NKX6-1,2:1.54933553356;IRF7:1.49510313753;ELK1,4_GABP{A,B1}:1.47460772221;IRF1,2:1.46668913386;AIRE:1.4199309607;VSX1,2:1.21645265389;TOPORS:1.20843363783;YY1:1.15851616252;CDX1,2,4:1.07172850553;SPI1:1.06381210489;PITX1..3:1.05618570354;RUNX1..3:0.940152062404;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.919831281465;HIF1A:0.899817141961;NRF1:0.835693970747;PAX8:0.828515195219;FOXA2:0.81754910981;SPIB:0.75726288428;PAX3,7:0.728357783781;AHR_ARNT_ARNT2:0.70190316861;OCT4_SOX2{dimer}:0.693011208022;ETS1,2:0.66655498948;ZNF143:0.641278581487;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.63722364481;RBPJ:0.618482444571;SPZ1:0.609489804311;POU1F1:0.599189384278;ZBTB16:0.578706590101;BREu{core}:0.571122174873;FOXP3:0.570876137245;EVI1:0.56281751475;CUX2:0.498689100425;MYOD1:0.477713733436;HNF4A_NR2F1,2:0.472185380488;SNAI1..3:0.46146886368;ZEB1:0.441118523963;GFI1:0.417256894397;NR5A1,2:0.399228278616;STAT1,3:0.399087641675;LMO2:0.394269258785;NKX2-2,8:0.37751233752;ZNF384:0.325108090925;FOXP1:0.311719248387;RORA:0.305224985039;HSF1,2:0.302926364971;HNF1A:0.27321784702;POU3F1..4:0.269500818594;FOXN1:0.258623561881;TFDP1:0.25727759627;PBX1:0.234160543025;RFX2..5_RFXANK_RFXAP:0.205600179072;ESRRA:0.188331353019;FOX{F1,F2,J1}:0.184362507596;ESR1:0.180257491519;NANOG{mouse}:0.176370641435;SOX{8,9,10}:0.171739684084;GATA6:0.164454703001;ATF5_CREB3:0.152456456576;TP53:0.110625715415;PAX4:0.102686404325;HES1:0.0636307982011;EBF1:0.0606688639241;PRRX1,2:0.0576147158661;IKZF2:0.0481094509024;RXRA_VDR{dimer}:0.0384247884114;CREB1:0.0359693117775;ALX4:0.0245585144887;TGIF1:0.0238893267514;CDC5L:0.0184650638678;bHLH_family:0.00791176274905;NKX3-2:-0.0105949834911;PAX2:-0.0253417049777;ARID5B:-0.0451944890788;CRX:-0.0673035273525;SOX5:-0.0696552010571;LHX3,4:-0.114107163925;ATF4:-0.137287420656;PRDM1:-0.185771814873;MEF2{A,B,C,D}:-0.2174610513;NFE2:-0.228282728399;NKX2-3_NKX2-5:-0.236738971768;SRF:-0.252350217833;LEF1_TCF7_TCF7L1,2:-0.26512419674;FOXQ1:-0.268648767937;HOX{A4,D4}:-0.270616741497;BPTF:-0.308831318292;HMGA1,2:-0.335298001327;DBP:-0.34495890564;ALX1:-0.346728581228;NR1H4:-0.361577775012;TLX2:-0.380828577265;HAND1,2:-0.411814836317;NR6A1:-0.415028478442;ADNP_IRX_SIX_ZHX:-0.42850788804;GATA4:-0.435805164735;FOS_FOS{B,L1}_JUN{B,D}:-0.461141958404;NFATC1..3:-0.479898960348;GLI1..3:-0.487374500148;SOX17:-0.488128512461;KLF4:-0.497902774133;AR:-0.507909197774;TFAP4:-0.522348919963;EP300:-0.526916644209;SOX2:-0.526961172944;RXR{A,B,G}:-0.551208393755;ONECUT1,2:-0.564395793677;BACH2:-0.568508721312;FOSL2:-0.577727158933;IKZF1:-0.584731395214;ZFP161:-0.597206598118;HOX{A5,B5}:-0.600566230497;UFEwm:-0.612646250138;GFI1B:-0.630287690181;MYBL2:-0.642990423;EN1,2:-0.646898245869;HOX{A6,A7,B6,B7}:-0.652692797859;NKX2-1,4:-0.666957862082;STAT2,4,6:-0.675326966469;HBP1_HMGB_SSRP1_UBTF:-0.682285429885;CEBPA,B_DDIT3:-0.713471996601;ATF2:-0.738438095994;SMAD1..7,9:-0.740863718286;TEF:-0.742785773565;MZF1:-0.763787037213;NKX3-1:-0.764472017373;ZNF423:-0.769356810364;HLF:-0.791877699918;PAX1,9:-0.816254622583;RREB1:-0.82964787328;GCM1,2:-0.830251683428;ZNF148:-0.84501289566;NHLH1,2:-0.865742369697;TAL1_TCF{3,4,12}:-0.871887048798;NFIL3:-0.882928205655;SREBF1,2:-0.88355580406;EGR1..3:-0.899805371269;MYFfamily:-0.914936293499;FOXD3:-0.922252161891;PPARG:-0.922446081413;ZIC1..3:-0.931495652885;NFIX:-0.937377091175;MTE{core}:-0.945769286306;TBX4,5:-0.947563594796;MTF1:-0.986591721146;STAT5{A,B}:-0.991176055539;TBP:-0.99474022716;RFX1:-1.00381525853;FOXM1:-1.00415551197;REST:-1.0455776192;FOXO1,3,4:-1.04882307684;GTF2I:-1.0626962157;XCPE1{core}:-1.08761652811;T:-1.09796123102;JUN:-1.09918960581;NFE2L2:-1.13187900825;HIC1:-1.13516561748;PAX5:-1.19853631231;MED-1{core}:-1.25203379674;XBP1:-1.25698385602;TFCP2:-1.27478979339;GTF2A1,2:-1.28417445597;NANOG:-1.2898107102;ZNF238:-1.29284524731;NFE2L1:-1.29417361869;TFAP2{A,C}:-1.29535054719;ATF6:-1.31519175134;HMX1:-1.31692243834;MAFB:-1.31839609304;PATZ1:-1.39642354822;TLX1..3_NFIC{dimer}:-1.44687983091;GZF1:-1.49128341327;MAZ:-1.5042513463;POU6F1:-1.61154144892;NR3C1:-1.6266388791;TEAD1:-1.64904270587;ZBTB6:-1.66319844207;FOX{D1,D2}:-1.72092736549;SP1:-1.78078064422;TFAP2B:-1.808530438;FOX{I1,J2}:-2.14310516309;FOXL1:-2.5946263389 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10822-111C3;search_select_hide=table117:FF:10822-111C3 | |||
}} | }} |
Latest revision as of 15:07, 3 June 2020
Name: | B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12332 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12332
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12332
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.00872 |
10 | 10 | 0.0263 |
100 | 100 | 0.498 |
101 | 101 | 0.223 |
102 | 102 | 0.534 |
103 | 103 | 0.232 |
104 | 104 | 0.51 |
105 | 105 | 0.613 |
106 | 106 | 0.969 |
107 | 107 | 0.711 |
108 | 108 | 0.945 |
109 | 109 | 0.0684 |
11 | 11 | 0.22 |
110 | 110 | 0.149 |
111 | 111 | 0.0619 |
112 | 112 | 0.113 |
113 | 113 | 0.566 |
114 | 114 | 0.383 |
115 | 115 | 0.535 |
116 | 116 | 0.411 |
117 | 117 | 0.0233 |
118 | 118 | 0.167 |
119 | 119 | 0.26 |
12 | 12 | 0.985 |
120 | 120 | 0.415 |
121 | 121 | 0.758 |
122 | 122 | 0.429 |
123 | 123 | 6.86378e-5 |
124 | 124 | 0.0943 |
125 | 125 | 0.304 |
126 | 126 | 0.311 |
127 | 127 | 0.336 |
128 | 128 | 0.6 |
129 | 129 | 0.505 |
13 | 13 | 0.0846 |
130 | 130 | 0.535 |
131 | 131 | 0.311 |
132 | 132 | 0.619 |
133 | 133 | 0.827 |
134 | 134 | 0.649 |
135 | 135 | 0.945 |
136 | 136 | 0.125 |
137 | 137 | 0.725 |
138 | 138 | 0.989 |
139 | 139 | 0.521 |
14 | 14 | 0.748 |
140 | 140 | 0.381 |
141 | 141 | 0.0508 |
142 | 142 | 0.896 |
143 | 143 | 0.434 |
144 | 144 | 0.614 |
145 | 145 | 0.0679 |
146 | 146 | 0.62 |
147 | 147 | 0.284 |
148 | 148 | 0.035 |
149 | 149 | 0.37 |
15 | 15 | 0.0521 |
150 | 150 | 0.913 |
151 | 151 | 0.657 |
152 | 152 | 0.0922 |
153 | 153 | 0.886 |
154 | 154 | 0.924 |
155 | 155 | 0.194 |
156 | 156 | 0.755 |
157 | 157 | 0.137 |
158 | 158 | 0.99 |
159 | 159 | 0.0876 |
16 | 16 | 0.812 |
160 | 160 | 0.226 |
161 | 161 | 0.0406 |
162 | 162 | 0.846 |
163 | 163 | 0.647 |
164 | 164 | 0.105 |
165 | 165 | 0.726 |
166 | 166 | 0.218 |
167 | 167 | 0.367 |
168 | 168 | 0.325 |
169 | 169 | 0.712 |
17 | 17 | 0.806 |
18 | 18 | 0.709 |
19 | 19 | 0.609 |
2 | 2 | 0.689 |
20 | 20 | 0.274 |
21 | 21 | 0.175 |
22 | 22 | 0.996 |
23 | 23 | 0.231 |
24 | 24 | 0.171 |
25 | 25 | 0.0967 |
26 | 26 | 0.0506 |
27 | 27 | 0.539 |
28 | 28 | 0.348 |
29 | 29 | 0.0249 |
3 | 3 | 0.0619 |
30 | 30 | 0.112 |
31 | 31 | 0.848 |
32 | 32 | 0.568 |
33 | 33 | 0.29 |
34 | 34 | 0.586 |
35 | 35 | 0.174 |
36 | 36 | 0.0363 |
37 | 37 | 0.348 |
38 | 38 | 0.359 |
39 | 39 | 0.434 |
4 | 4 | 0.738 |
40 | 40 | 0.474 |
41 | 41 | 0.74 |
42 | 42 | 0.0744 |
43 | 43 | 0.473 |
44 | 44 | 0.163 |
45 | 45 | 0.368 |
46 | 46 | 0.26 |
47 | 47 | 0.0354 |
48 | 48 | 0.0576 |
49 | 49 | 0.323 |
5 | 5 | 0.642 |
50 | 50 | 0.859 |
51 | 51 | 0.673 |
52 | 52 | 0.289 |
53 | 53 | 0.354 |
54 | 54 | 0.71 |
55 | 55 | 0.472 |
56 | 56 | 0.742 |
57 | 57 | 0.214 |
58 | 58 | 0.0665 |
59 | 59 | 0.29 |
6 | 6 | 0.84 |
60 | 60 | 0.888 |
61 | 61 | 0.12 |
62 | 62 | 0.0933 |
63 | 63 | 0.693 |
64 | 64 | 0.222 |
65 | 65 | 0.979 |
66 | 66 | 0.348 |
67 | 67 | 0.804 |
68 | 68 | 0.0487 |
69 | 69 | 0.505 |
7 | 7 | 0.116 |
70 | 70 | 0.552 |
71 | 71 | 0.0209 |
72 | 72 | 0.402 |
73 | 73 | 0.951 |
74 | 74 | 0.799 |
75 | 75 | 0.00708 |
76 | 76 | 0.504 |
77 | 77 | 0.621 |
78 | 78 | 0.0245 |
79 | 79 | 0.745 |
8 | 8 | 0.704 |
80 | 80 | 0.0988 |
81 | 81 | 0.46 |
82 | 82 | 0.812 |
83 | 83 | 0.271 |
84 | 84 | 0.22 |
85 | 85 | 0.32 |
86 | 86 | 0.366 |
87 | 87 | 0.0989 |
88 | 88 | 0.719 |
89 | 89 | 0.95 |
9 | 9 | 0.919 |
90 | 90 | 0.417 |
91 | 91 | 0.692 |
92 | 92 | 0.803 |
93 | 93 | 0.306 |
94 | 94 | 0.765 |
95 | 95 | 0.0173 |
96 | 96 | 0.786 |
97 | 97 | 0.169 |
98 | 98 | 0.466 |
99 | 99 | 0.313 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12332
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102062 B-lymphoblastoid cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101035 (hematopoietic cell line sample)
0100773 (lymphoblastoid cell line sample)
0101522 (B-lymphocyte cell line sample)
0102062 (B-lymphoblastoid cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)