FF:10824-111C5: Difference between revisions

Latest revision as of 15:07, 3 June 2020

Name:	chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
Species:	Human (Homo sapiens)
Library ID:	CNhs12334
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	53
cell type	granulocyte
cell line	K562
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004982

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12334		CAGE		DRX007855		DRR008727

Accession ID Hg19

Library id		BAM		CTSS
CNhs12334		DRZ000152		DRZ001537

Accession ID Hg38

Library id		BAM		CTSS
CNhs12334		DRZ011502		DRZ012887

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0125
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.673
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0249
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.181
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.199
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.322
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.545
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0.931
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12334

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.444
MA0003.1	MA0003.1	0.69
MA0004.1	MA0004.1	0.219
MA0006.1	MA0006.1	0.155
MA0007.1	MA0007.1	0.324
MA0009.1	MA0009.1	0.379
MA0014.1	MA0014.1	0.144
MA0017.1	MA0017.1	0.235
MA0018.2	MA0018.2	0.64
MA0019.1	MA0019.1	0.933
MA0024.1	MA0024.1	1.4117e-6
MA0025.1	MA0025.1	0.751
MA0027.1	MA0027.1	0.403
MA0028.1	MA0028.1	1.88772e-7
MA0029.1	MA0029.1	0.00638
MA0030.1	MA0030.1	0.268
MA0031.1	MA0031.1	0.521
MA0035.2	MA0035.2	1.05925e-21
MA0038.1	MA0038.1	0.108
MA0039.2	MA0039.2	0.0144
MA0040.1	MA0040.1	0.0438
MA0041.1	MA0041.1	0.329
MA0042.1	MA0042.1	0.469
MA0043.1	MA0043.1	0.423
MA0046.1	MA0046.1	0.846
MA0047.2	MA0047.2	0.658
MA0048.1	MA0048.1	0.19
MA0050.1	MA0050.1	5.64016e-6
MA0051.1	MA0051.1	2.73622e-6
MA0052.1	MA0052.1	0.0113
MA0055.1	MA0055.1	2.35336e-4
MA0057.1	MA0057.1	0.587
MA0058.1	MA0058.1	0.0463
MA0059.1	MA0059.1	0.00348
MA0060.1	MA0060.1	5.39269e-19
MA0061.1	MA0061.1	0.622
MA0062.2	MA0062.2	7.63826e-10
MA0065.2	MA0065.2	0.0331
MA0066.1	MA0066.1	0.491
MA0067.1	MA0067.1	0.83
MA0068.1	MA0068.1	0.0121
MA0069.1	MA0069.1	0.865
MA0070.1	MA0070.1	0.24
MA0071.1	MA0071.1	0.19
MA0072.1	MA0072.1	0.217
MA0073.1	MA0073.1	0.95
MA0074.1	MA0074.1	0.139
MA0076.1	MA0076.1	1.05948e-10
MA0077.1	MA0077.1	0.363
MA0078.1	MA0078.1	0.262
MA0079.2	MA0079.2	0.436
MA0080.2	MA0080.2	0.248
MA0081.1	MA0081.1	0.0447
MA0083.1	MA0083.1	0.113
MA0084.1	MA0084.1	0.875
MA0087.1	MA0087.1	0.107
MA0088.1	MA0088.1	0.00108
MA0090.1	MA0090.1	0.00236
MA0091.1	MA0091.1	0.72
MA0092.1	MA0092.1	0.549
MA0093.1	MA0093.1	0.132
MA0099.2	MA0099.2	0.277
MA0100.1	MA0100.1	0.0054
MA0101.1	MA0101.1	0.372
MA0102.2	MA0102.2	0.00839
MA0103.1	MA0103.1	0.322
MA0104.2	MA0104.2	1.70365e-4
MA0105.1	MA0105.1	0.058
MA0106.1	MA0106.1	0.709
MA0107.1	MA0107.1	0.0214
MA0108.2	MA0108.2	0.00879
MA0111.1	MA0111.1	0.339
MA0112.2	MA0112.2	0.127
MA0113.1	MA0113.1	0.633
MA0114.1	MA0114.1	0.031
MA0115.1	MA0115.1	0.111
MA0116.1	MA0116.1	0.00838
MA0117.1	MA0117.1	0.569
MA0119.1	MA0119.1	0.626
MA0122.1	MA0122.1	0.957
MA0124.1	MA0124.1	0.924
MA0125.1	MA0125.1	0.865
MA0131.1	MA0131.1	0.512
MA0135.1	MA0135.1	0.0571
MA0136.1	MA0136.1	0.374
MA0137.2	MA0137.2	0.253
MA0138.2	MA0138.2	0.924
MA0139.1	MA0139.1	0.0484
MA0140.1	MA0140.1	2.19408e-36
MA0141.1	MA0141.1	0.00107
MA0142.1	MA0142.1	0.197
MA0143.1	MA0143.1	0.152
MA0144.1	MA0144.1	0.966
MA0145.1	MA0145.1	0.91
MA0146.1	MA0146.1	0.0716
MA0147.1	MA0147.1	1.44259e-5
MA0148.1	MA0148.1	0.323
MA0149.1	MA0149.1	0.0163
MA0150.1	MA0150.1	0.224
MA0152.1	MA0152.1	0.439
MA0153.1	MA0153.1	0.17
MA0154.1	MA0154.1	0.286
MA0155.1	MA0155.1	0.645
MA0156.1	MA0156.1	0.00134
MA0157.1	MA0157.1	0.352
MA0159.1	MA0159.1	0.316
MA0160.1	MA0160.1	0.0289
MA0162.1	MA0162.1	0.663
MA0163.1	MA0163.1	1.46982e-6
MA0164.1	MA0164.1	0.676
MA0258.1	MA0258.1	0.237
MA0259.1	MA0259.1	0.0115

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12334

Novel motif	Logo	P-value
1	1	0.0132
10	10	0.0637
100	100	0.271
101	101	0.403
102	102	0.368
103	103	0.897
104	104	0.692
105	105	0.915
106	106	0.0432
107	107	0.0318
108	108	0.981
109	109	0.0174
11	11	0.114
110	110	0.168
111	111	0.435
112	112	0.788
113	113	0.129
114	114	0.0488
115	115	0.405
116	116	0.38
117	117	0.013
118	118	0.206
119	119	0.821
12	12	0.817
120	120	0.647
121	121	0.886
122	122	0.107
123	123	0.667
124	124	0.433
125	125	0.456
126	126	0.117
127	127	0.204
128	128	0.0953
129	129	0.601
13	13	0.00121
130	130	0.0466
131	131	0.287
132	132	0.182
133	133	0.102
134	134	0.942
135	135	0.31
136	136	0.0398
137	137	0.32
138	138	0.503
139	139	0.361
14	14	0.505
140	140	0.0181
141	141	0.0191
142	142	0.941
143	143	0.706
144	144	0.866
145	145	0.989
146	146	0.924
147	147	0.904
148	148	0.91
149	149	0.206
15	15	0.485
150	150	0.448
151	151	0.365
152	152	0.0733
153	153	0.952
154	154	0.366
155	155	0.153
156	156	0.447
157	157	0.41
158	158	0.888
159	159	0.135
16	16	0.865
160	160	0.583
161	161	0.0417
162	162	0.703
163	163	0.337
164	164	0.425
165	165	0.793
166	166	0.089
167	167	0.233
168	168	0.519
169	169	0.601
17	17	0.628
18	18	0.804
19	19	0.947
2	2	0.226
20	20	0.0745
21	21	0.339
22	22	0.614
23	23	0.0405
24	24	0.112
25	25	0.334
26	26	0.113
27	27	0.404
28	28	0.635
29	29	0.0223
3	3	0.37
30	30	0.155
31	31	0.593
32	32	0.112
33	33	0.0513
34	34	0.36
35	35	0.248
36	36	0.0283
37	37	0.257
38	38	0.289
39	39	0.237
4	4	0.0546
40	40	0.123
41	41	0.925
42	42	0.253
43	43	0.504
44	44	0.57
45	45	0.496
46	46	0.379
47	47	0.0196
48	48	0.139
49	49	0.112
5	5	0.805
50	50	0.937
51	51	0.969
52	52	0.0495
53	53	0.922
54	54	0.761
55	55	0.0235
56	56	0.818
57	57	0.269
58	58	0.399
59	59	0.977
6	6	0.325
60	60	0.43
61	61	0.074
62	62	0.327
63	63	0.475
64	64	0.402
65	65	0.629
66	66	5.17975e-6
67	67	0.559
68	68	0.177
69	69	0.652
7	7	0.0418
70	70	0.364
71	71	0.0233
72	72	0.319
73	73	0.82
74	74	0.479
75	75	0.00736
76	76	0.572
77	77	0.555
78	78	6.79721e-4
79	79	0.142
8	8	0.393
80	80	0.126
81	81	0.503
82	82	0.984
83	83	0.139
84	84	0.697
85	85	0.23
86	86	0.808
87	87	0.0856
88	88	0.873
89	89	0.77
9	9	0.441
90	90	0.429
91	91	0.0631
92	92	0.695
93	93	0.835
94	94	0.955
95	95	0.0267
96	96	0.537
97	97	0.365
98	98	0.219
99	99	0.602

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12334

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100664 K-562 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100664 (K-562 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00004982
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007855;DRR008727;DRZ000152;DRZ001537;DRZ011502;DRZ012887
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102580,FF:0101035,FF:0100740,FF:0100664
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:48644984..48645005,+!p1@GATA1!2.33!214.54!GATA1;;chr17:40441354..40441410,+!p2@STAT5A!2.17!146.41!STAT5A;;chr20:56100179..56100208,-!p1@CTCFL!2.03!107.16!CTCFL;;chr12:54694758..54694805,-!p1@NFE2!1.84!82.57!NFE2;;chr17:46703687..46703740,-!p1@HOXB9!1.76!57.08!HOXB9;;chr19:12998003..12998021,-!p1@KLF1!1.68!47.38!KLF1;;chr6:135502501..135502546,+!p1@MYB!1.67!54.82!MYB;;chr9:135854091..135854159,+!p1@GFI1B!1.67!45.34!GFI1B;;chr5:134369905..134369972,-!p1@PITX1!1.65!66.33!PITX1;;chr8:37963466..37963506,+!p3@ASH2L!1.65!54.82!ASH2L;;chr12:54694807..54694832,-!p3@NFE2!1.65!43.54!NFE2;;chr12:54785074..54785122,-!p2@ZNF385A!1.61!60.46!ZNF385A;;chr3:128206762..128206781,-!p2@GATA2!1.57!214.32!GATA2;;chr3:128212033..128212051,-!p1@GATA2!1.50!30.68!GATA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.48!268.23!ZNF595;;chr12:54689532..54689551,-!p4@NFE2!1.48!29.33!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.48!29.33!NFE2;;chr20:31350184..31350200,+!p1@DNMT3B!1.40!49.18!DNMT3B;;chr19:13213511..13213545,-!p2@LYL1!1.33!22.33!LYL1;;chr10:70320074..70320106,+!p1@TET1!1.23!32.26!TET1;;chr22:19748231..19748317,+!p1@TBX1!1.23!15.79!TBX1;;chrX:48644976..48644983,+!p2@GATA1!1.23!15.79!GATA1;;chr6:135502408..135502459,+!p2@MYB!1.22!18.05!MYB;;chr17:46622229..46622257,-!p6@HOXB2!1.19!17.15!HOXB2;;chrX:48645010..48645015,+!p3@GATA1!1.19!14.44!GATA1;;chr17:40469520..40469532,-!p12@STAT3!1.18!14.21!STAT3;;chr12:54785054..54785072,-!p4@ZNF385A!1.17!15.57!ZNF385A;;chr1:47695003..47695042,-!p2@TAL1!1.16!13.54!TAL1;;chr7:50343634..50343717,+!p2@IKZF1!1.16!13.54!IKZF1;;chr1:47697881..47697910,-!p4@TAL1!1.16!13.31!TAL1;;chr8:145701192..145701241,-!p1@FOXH1!1.15!13.08!FOXH1;;chr10:94449703..94449718,+!p1@HHEX!1.14!48.95!HHEX;;chr17:46622205..46622218,-!p3@HOXB2!1.14!14.66!HOXB2;;chr19:13213555..13213568,-!p5@LYL1!1.13!12.41!LYL1;;chr17:40441330..40441344,+!p9@STAT5A!1.12!12.18!STAT5A;;chr5:88178983..88179012,-!p1@MEF2C!1.11!92.49!MEF2C;;chr20:50159198..50159299,-!p1@NFATC2!1.10!17.15!NFATC2;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.33!ZFPM2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.06!10.60!SOHLH2;;chr5:134369879..134369898,-!p2@PITX1!1.06!10.38!PITX1;;chr20:56100155..56100163,-!p2@CTCFL!1.06!10.38!CTCFL;;chr17:40469457..40469494,-!p14@STAT3!1.06!10.38!STAT3;;chr12:54689552..54689574,-!p6@NFE2!1.03!9.70!NFE2;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.48!HAND2;;chr17:41623692..41623715,-!p1@ETV4!1.01!39.93!ETV4;;chr8:37963407..37963454,+!p2@ASH2L!1.01!27.75!ASH2L;;chr6:135502472..135502489,+!p3@MYB!1.00!9.02!MYB;;chr12:56414795..56414836,+!p4@IKZF4!1.00!9.02!IKZF4;;chr3:141747459..141747475,-!p1@TFDP2!0.98!72.64!TFDP2;;chr20:42295713..42295738,+!p2@MYBL2!0.97!51.21!MYBL2;;chr2:239148671..239148686,-!p1@HES6!0.97!31.36!HES6;;chr2:200323414..200323455,-!p1@SATB2!0.97!18.05!SATB2;;chr22:22863052..22863133,-!p1@ZNF280B!0.96!22.11!ZNF280B;;chr17:40440177..40440190,+!p6@STAT5A!0.96!8.12!STAT5A;;chr17:46682321..46682362,-!p1@HOXB6!0.96!8.12!HOXB6;;chr17:46655730..46655791,-!p1@HOXB4!0.95!20.53!HOXB4;;chr19:22235279..22235301,+!p1@ZNF257!0.95!15.34!ZNF257;;chr11:32457075..32457095,-!p1@WT1!0.95!7.90!WT1;;chr12:56415246..56415286,+!p2@IKZF4!0.95!7.90!IKZF4;;chr6:20402102..20402152,+!p1@E2F3!0.93!32.03!E2F3;;chr17:40469366..40469383,-!p17@STAT3!0.93!7.44!STAT3;;chr22:22874610..22874616,-!p1@ZNF280A!0.93!7.44!ZNF280A;;chr3:138665969..138665993,-!p2@FOXL2!0.93!7.44!FOXL2;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.80!TBX18;;chr20:62680984..62680999,-!p1@SOX18!0.89!9.02!SOX18;;chr9:124976185..124976212,-!p4@LHX6!0.89!6.77!LHX6;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.88!31.58!TAL1;;chr2:200322259..200322280,-!p5@SATB2!0.88!6.54!SATB2;;chr9:135854074..135854089,+!p2@GFI1B!0.88!6.54!GFI1B;;chr6:34204642..34204664,+!p2@HMGA1!0.87!914.34!HMGA1;;chr10:94449675..94449694,+!p2@HHEX!0.86!17.60!HHEX;;chr15:76629123..76629151,+!p1@ISL2!0.86!6.99!ISL2;;chr10:124895472..124895508,+!p1@HMX3!0.86!6.32!HMX3;;chr17:41277372..41277418,-!p1@BRCA1!0.84!23.01!BRCA1;;chr17:46622440..46622477,-!p5@HOXB2!0.84!6.77!HOXB2;;chr8:106330696..106330719,+!p2@ZFPM2!0.83!7.44!ZFPM2;;chr17:42295777..42295816,-!p7@UBTF!0.83!6.99!UBTF;;chr2:145277640..145277771,-!p1@ZEB2!0.82!81.67!ZEB2;;chr5:88179017..88179046,-!p2@MEF2C!0.82!23.91!MEF2C;;chr11:47400078..47400106,-!p1@SPI1!0.82!5.64!SPI1;;chr7:148581360..148581425,-!p1@EZH2!0.81!28.88!EZH2;;chr17:46703826..46703845,-!p3@HOXB9!0.81!5.41!HOXB9;;chr3:141747441..141747452,-!p4@TFDP2!0.80!7.67!TFDP2;;chr1:43148625..43148710,+!p3@YBX1!0.79!9.70!YBX1;;chr11:47400045..47400060,-!p6@SPI1!0.79!5.19!SPI1;;chr19:926001..926046,+!p1@ARID3A!0.78!18.95!ARID3A;;chr8:28748099..28748141,+!p2@HMBOX1!0.78!16.92!HMBOX1;;chr17:46655704..46655718,-!p2@HOXB4!0.78!7.90!HOXB4;;chr10:70320041..70320065,+!p2@TET1!0.78!4.96!TET1;;chr11:32457103..32457123,-!p3@WT1!0.78!4.96!WT1;;chr8:37963511..37963523,+!p4@ASH2L!0.78!4.96!ASH2L;;chr10:51572408..51572454,+!p3@NCOA4!0.77!30.91!NCOA4;;chr16:68118689..68118733,+!p3@NFATC3!0.77!13.31!NFATC3;;chr11:61520075..61520136,+!p1@C11orf9!0.77!11.05!C11orf9;;chr20:42295745..42295765,+!p1@MYBL2!0.76!86.85!MYBL2;;chr17:46622114..46622138,-!p4@HOXB2!0.76!7.67!HOXB2;;chr2:200322654..200322707,-!p2@SATB2!0.76!7.22!SATB2;;chr3:128207349..128207386,-!p3@GATA2!0.76!4.74!GATA2;;chr3:138665937..138665968,-!p1@FOXL2!0.76!4.74!FOXL2;;chr9:124976154..124976177,-!p5@LHX6!0.76!4.74!LHX6;;chr6:34204672..34204692,+!p1@HMGA1!0.75!576.40!HMGA1;;chr7:64363638..64363667,+!p1@ZNF273!0.75!25.27!ZNF273;;chr10:51572339..51572376,+!p4@NCOA4!0.75!11.28!NCOA4;;chr6:12008986..12009016,+!p3@HIVEP1!0.74!15.34!HIVEP1;;chr7:50348268..50348366,+!p4@IKZF1!0.74!4.51!IKZF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.74!4.51!ZBED1;;chr12:54694738..54694749,-!p5@NFE2!0.74!4.51!NFE2;;chr2:172949484..172949522,+!p1@DLX1!0.74!4.51!DLX1;;chr3:141747950..141748004,-!p7@TFDP2!0.74!4.51!TFDP2;;chr16:68119324..68119364,+!p1@NFATC3!0.72!21.21!NFATC3;;chr17:46622175..46622186,-!p12@HOXB2!0.72!4.29!HOXB2;;chr4:4291861..4291913,-!p1@LYAR!0.71!107.61!LYAR;;chr13:41593425..41593480,-!p1@ELF1!0.71!29.55!ELF1;;chr7:148581327..148581347,-!p2@EZH2!0.71!15.57!EZH2;;chr11:6947720..6947812,+!p1@ZNF215!0.71!5.64!ZNF215;;chr5:138609782..138609826,+!p5@MATR3!0.70!29.33!MATR3;;chr19:52074502..52074587,+!p1@ZNF175!0.70!16.02!ZNF175;;chr19:24097675..24097699,+!p1@ZNF726!0.70!14.66!ZNF726;;chr17:46622070..46622109,-!p1@HOXB2!0.70!9.70!HOXB2;;chr6:20402070..20402082,+!p5@E2F3!0.70!4.74!E2F3;;chr7:73038839..73038862,-!p1@MLXIPL!0.70!4.06!MLXIPL;;chr17:46703528..46703549,-!p5@HOXB9!0.70!4.06!HOXB9;;chr9:127533582..127533615,-!p1@NR6A1!0.69!6.09!NR6A1;;chr6:134274354..134274371,+!p1@TBPL1!0.68!115.50!TBPL1;;chr16:29818160..29818188,+!p6@MAZ!0.68!20.30!MAZ;;chr17:79881332..79881348,-!p3@MAFG!0.68!5.87!MAFG;;chr14:29235961..29236008,+!p1@FOXG1!0.68!3.84!FOXG1;;chr14:29236269..29236285,+!p3@FOXG1!0.68!3.84!FOXG1;;chr9:124976328..124976372,-!p2@LHX6!0.68!3.84!LHX6;;chr2:200322229..200322251,-!p3@SATB2!0.68!3.84!SATB2;;chr2:63277948..63277974,+!p1@OTX1!0.68!3.84!OTX1;;chr1:151032860..151032918,+!p1@MLLT11!0.67!50.53!MLLT11;;chr19:35417798..35417842,+!p1@ZNF30!0.67!6.54!ZNF30;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.87!ETV4;;chr22:20748434..20748455,+!p1@ZNF74!0.66!12.63!ZNF74;;chr1:203764633..203764674,+!p2@ZC3H11A!0.66!6.09!ZC3H11A;;chr18:55102598..55102623,+!p1@ONECUT2!0.66!3.61!ONECUT2;;chr1:226595726..226595737,-!p2@PARP1!0.64!9.25!PARP1;;chr1:23857698..23857733,-!p1@E2F2!0.64!6.77!E2F2;;chr7:50344251..50344288,+!p3@IKZF1!0.64!3.38!IKZF1;;chr22:21356016..21356105,-!p1@THAP7!0.63!61.36!THAP7;;chr17:41622834..41622883,-!p6@ETV4!0.63!4.06!ETV4;;chr9:127533519..127533573,-!p2@NR6A1!0.63!4.06!NR6A1;;chr10:60145155..60145206,+!p1@TFAM!0.62!165.36!TFAM;;chr7:64254793..64254813,+!p1@ZNF138!0.62!43.77!ZNF138;;chr16:88519669..88519726,+!p1@ZFPM1!0.62!34.06!ZFPM1;;chr1:247171347..247171366,-!p2@ZNF695!0.62!6.32!ZNF695;;chr1:43148855..43148908,+!p4@YBX1!0.62!5.41!YBX1;;chr15:76629097..76629120,+!p2@ISL2!0.62!3.61!ISL2;;chr19:13213465..13213478,-!p7@LYL1!0.62!3.16!LYL1;;chr12:54694686..54694697,-!p8@NFE2!0.62!3.16!NFE2;;chr9:135854058..135854072,+!p3@GFI1B!0.62!3.16!GFI1B;;chr4:4291837..4291859,-!p2@LYAR!0.61!11.51!LYAR;;chr8:128748470..128748487,+!p1@MYC!0.60!402.91!MYC;;chr1:8877692..8877732,-!p1@RERE!0.60!28.88!RERE;;chr19:23941647..23941672,-!p2@ZNF681!0.60!5.41!ZNF681;;chr1:43148716..43148756,+!p6@YBX1!0.60!3.84!YBX1;;chr22:21356378..21356422,-!p2@THAP7!0.59!31.13!THAP7;;chr2:74229812..74229867,+!p1@TET3!0.59!8.35!TET3;;chr19:926055..926068,+!p2@ARID3A!0.59!7.22!ARID3A;;chr1:40367530..40367597,-!p1@MYCL1!0.59!5.87!MYCL1;;chr17:41623009..41623053,-!p4@ETV4!0.59!5.19!ETV4;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.59!5.19!PCBP2;;chr17:40440446..40440464,+!p5@STAT5A!0.59!2.93!STAT5A;;chr3:69788576..69788648,+!p1@MITF!0.58!17.82!MITF;;chr9:37465399..37465454,-!p1@ZBTB5!0.58!14.44!ZBTB5;;chr1:43148792..43148849,+!p2@YBX1!0.58!12.63!YBX1;;chr16:1429627..1429662,-!p2@UNKL!0.58!9.70!UNKL;;chr19:23941680..23941704,-!p1@ZNF681!0.58!9.48!ZNF681;;chr8:145669791..145669834,-!p1@TONSL!0.58!9.48!TONSL;;chr19:47617013..47617069,-!p2@ZC3H4!0.57!20.08!ZC3H4;;chr5:133450365..133450444,+!p1@TCF7!0.57!14.89!TCF7;;chr6:126102254..126102289,+!p5@NCOA7!0.57!8.80!NCOA7;;chr14:21994337..21994442,-!p1@SALL2!0.57!8.80!SALL2;;chr1:61548069..61548102,+!p3@NFIA!0.57!7.67!NFIA;;chr6:28973090..28973094,-!p1@ZNF311!0.57!3.61!ZNF311;;chr5:88180342..88180365,-!p10@MEF2C!0.57!2.71!MEF2C;;chr7:102985160..102985273,-!p1@DNAJC2!0.56!83.24!DNAJC2;;chr6:7107999..7108031,+!p2@RREB1!0.56!16.92!RREB1;;chr19:45579725..45579743,-!p1@ZNF296!0.56!14.44!ZNF296;;chr6:56954867..56954882,+!p2@ZNF451!0.56!9.25!ZNF451;;chr19:24097706..24097731,+!p2@ZNF726!0.56!5.64!ZNF726;;chr14:55493763..55493824,-!p1@WDHD1!0.55!23.69!WDHD1;;chr3:168864315..168864339,-!p2@MECOM!0.55!4.74!MECOM;;chr1:78444778..78444800,-!p2@FUBP1!0.54!54.59!FUBP1;;chr17:40428359..40428462,-!p1@STAT5B!0.54!40.16!STAT5B;;chr19:21264991..21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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10824-111C5
 |is_a=EFO:0002091;;FF:0000210;;FF:0100664
 |is_obsolete=
+|library_id=CNhs12334
+|library_id_phase_based=2:CNhs12334
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10824
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10824
 |name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12334,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 58: / Line 78: @@
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@@ Line 74: / Line 95: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10824-111C5;search_select_hide=table117:FF:10824-111C5
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FF:10824-111C5: Difference between revisions

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Latest revision as of 15:07, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0