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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005424
|accession_numbers=CAGE;DRX007950;DRR008822;DRZ000247;DRZ001632;DRZ011597;DRZ012982
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000222,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.60!46.98!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.85!TFAP2A;;chr5:172662197..172662216,-!p1@NKX2-5!1.41!24.87!NKX2-5;;chr5:2751762..2751784,-!p1@IRX2!1.40!23.83!IRX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.30!21.42!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!1.23!15.89!TBX20;;chr20:30433396..30433414,-!p1@FOXS1!1.22!15.54!FOXS1;;chr2:45236540..45236577,-!p1@SIX2!1.17!13.82!SIX2;;chr1:201979703..201979721,+!p2@ELF3!1.07!10.71!ELF3;;chr1:151032860..151032918,+!p1@MLLT11!1.04!119.86!MLLT11;;chr12:80084737..80084763,-!p3@PAWR!1.04!38.00!PAWR;;chr5:134369905..134369972,-!p1@PITX1!1.04!15.54!PITX1;;chr2:237077022..237077038,-!p1@GBX2!1.04!10.02!GBX2;;chr7:101917407..101917443,+!p3@CUX1!1.00!8.98!CUX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.00!8.98!SEBOX;;chr20:42295745..42295765,+!p1@MYBL2!0.98!141.63!MYBL2;;chr7:101917447..101917479,+!p4@CUX1!0.98!8.64!CUX1;;chr11:31832658..31832681,-!p1@PAX6!0.98!8.64!PAX6;;chr1:180199393..180199426,+!p1@LHX4!0.97!8.29!LHX4;;chr6:126240380..126240430,+!p2@NCOA7!0.96!21.76!NCOA7;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.36!TFAP2C;;chr7:1577899..1577943,+!p3@MAFK!0.95!7.94!MAFK;;chr11:12696071..12696086,+!p3@TEAD1!0.94!10.36!TEAD1;;chr11:19262421..19262455,-!p3@E2F8!0.93!7.60!E2F8;;chr5:172662230..172662241,-!p3@NKX2-5!0.92!7.25!NKX2-5;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.25!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!0.92!7.25!HES2;;chr9:2158443..2158481,+!p2@SMARCA2!0.90!20.38!SMARCA2;;chr1:151032922..151032951,+!p2@MLLT11!0.90!11.74!MLLT11;;chr7:149470540..149470596,-!p2@ZNF467!0.90!9.33!ZNF467;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.90!6.91!SEBOX;;chr20:42295713..42295738,+!p2@MYBL2!0.88!41.45!MYBL2;;chr12:54332608..54332636,+!p1@HOXC13!0.88!6.56!HOXC13;;chr6:1389789..1389821,+!p1@FOXF2!0.87!8.98!FOXF2;;chr2:185463247..185463263,+!p1@ZNF804A!0.86!11.40!ZNF804A;;chr6:10415484..10415508,-!p3@TFAP2A!0.86!6.22!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.86!6.22!CUX1;;chr7:149470641..149470694,-!p1@ZNF467!0.84!28.67!ZNF467;;chr7:156803329..156803362,-!p1@MNX1!0.84!5.87!MNX1;;chr20:32274179..32274213,-!p1@E2F1!0.80!38.00!E2F1;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.54!TEAD4;;chr1:935398..935465,-!p2@HES4!0.79!11.40!HES4;;chr7:1577111..1577132,+!p4@MAFK!0.79!5.87!MAFK;;chr5:2751785..2751808,-!p2@IRX2!0.79!5.18!IRX2;;chr17:41277372..41277418,-!p1@BRCA1!0.78!19.69!BRCA1;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr19:24097706..24097731,+!p2@ZNF726!0.76!9.67!ZNF726;;chr7:19157043..19157088,-!p2@TWIST1!0.74!12.09!TWIST1;;chr16:67198633..67198671,+!p1@HSF4!0.74!4.49!HSF4;;chr6:20402102..20402152,+!p1@E2F3!0.73!20.03!E2F3;;chr20:31350184..31350200,+!p1@DNMT3B!0.70!8.98!DNMT3B;;chr20:62680984..62680999,-!p1@SOX18!0.70!5.53!SOX18;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.56!PAWR;;chr12:124873852..124873881,-!p3@NCOR2!0.68!26.25!NCOR2;;chr12:3068634..3068656,+!p5@TEAD4!0.68!3.80!TEAD4;;chr13:100623375..100623425,-!p1@ZIC5!0.68!3.80!ZIC5;;chr5:3595977..3595999,+!p1@IRX1!0.68!3.80!IRX1;;chr7:35293665..35293680,-!p2@TBX20!0.68!3.80!TBX20;;chr9:129376201..129376225,+!p1@LMX1B!0.68!3.80!LMX1B;;chr4:4861385..4861398,+!p1@MSX1!0.67!12.09!MSX1;;chr16:1429627..1429662,-!p2@UNKL!0.67!12.09!UNKL;;chr7:19157248..19157268,-!p1@TWIST1!0.67!11.40!TWIST1;;chr8:60031619..60031676,-!p1@TOX!0.67!8.64!TOX;;chr19:35759976..35760042,+!p4@USF2!0.66!21.76!USF2;;chr8:145669791..145669834,-!p1@TONSL!0.66!11.40!TONSL;;chr8:60031682..60031710,-!p2@TOX!0.66!6.22!TOX;;chr14:37131058..37131139,+!p1@PAX9!0.65!3.45!PAX9;;chrY:21906594..21906622,-!p1@KDM5D!0.65!3.45!KDM5D;;chr1:201979743..201979762,+!p1@ELF3!0.65!3.45!ELF3;;chr17:41623692..41623715,-!p1@ETV4!0.64!16.58!ETV4;;chr10:48355030..48355090,+!p1@ZNF488!0.64!4.49!ZNF488;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.49!NCOA7;;chr4:4291861..4291913,-!p1@LYAR!0.63!89.81!LYAR;;chr3:128206762..128206781,-!p2@GATA2!0.62!23.49!GATA2;;chr15:37392094..37392116,-!p6@MEIS2!0.62!4.15!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.62!3.80!BNC1;;chr1:935467..935484,-!p1@HES4!0.61!15.89!HES4;;chr2:172949484..172949522,+!p1@DLX1!0.61!3.11!DLX1;;chr11:31832610..31832639,-!p5@PAX6!0.61!3.11!PAX6;;chr15:67418177..67418204,+!p9@SMAD3!0.61!3.11!SMAD3;;chr17:38501500..38501517,+!p13@RARA!0.61!3.11!RARA;;chr9:126774018..126774055,+!p1@LHX2!0.61!3.11!LHX2;;chr19:1592714..1592762,-!p1@MBD3!0.60!26.94!MBD3;;chr6:126240356..126240379,+!p7@NCOA7!0.60!3.80!NCOA7;;chr17:7590797..7590815,-!p1@TP53!0.59!155.44!TP53;;chr12:2986275..2986363,-!p1@FOXM1!0.59!34.89!FOXM1;;chr6:19837592..19837621,+!p1@ID4!0.59!21.42!ID4;;chr4:4291837..4291859,-!p2@LYAR!0.59!11.05!LYAR;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.25!GLI2;;chr9:99180617..99180658,-!p1@ZNF367!0.59!7.25!ZNF367;;chr1:151032739..151032748,+!p6@MLLT11!0.59!3.80!MLLT11;;chr7:77428149..77428220,+!p1@PHTF2!0.58!34.54!PHTF2;;chr4:8873716..8873738,-!p2@HMX1!0.58!2.76!HMX1;;chr5:134369879..134369898,-!p2@PITX1!0.58!2.76!PITX1;;chr6:10415263..10415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|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.60!46.98!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.85!TFAP2A;;chr5:172662197..172662216,-!p1@NKX2-5!1.41!24.87!NKX2-5;;chr5:2751762..2751784,-!p1@IRX2!1.40!23.83!IRX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.30!21.42!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!1.23!15.89!TBX20;;chr20:30433396..30433414,-!p1@FOXS1!1.22!15.54!FOXS1;;chr2:45236540..45236577,-!p1@SIX2!1.17!13.82!SIX2;;chr1:201979703..201979721,+!p2@ELF3!1.07!10.71!ELF3;;chr1:151032860..151032918,+!p1@MLLT11!1.04!119.86!MLLT11;;chr12:80084737..80084763,-!p3@PAWR!1.04!38.00!PAWR;;chr5:134369905..134369972,-!p1@PITX1!1.04!15.54!PITX1;;chr2:237077022..237077038,-!p1@GBX2!1.04!10.02!GBX2;;chr7:101917407..101917443,+!p3@CUX1!1.00!8.98!CUX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.00!8.98!SEBOX;;chr20:42295745..42295765,+!p1@MYBL2!0.98!141.63!MYBL2;;chr7:101917447..101917479,+!p4@CUX1!0.98!8.64!CUX1;;chr11:31832658..31832681,-!p1@PAX6!0.98!8.64!PAX6;;chr1:180199393..180199426,+!p1@LHX4!0.97!8.29!LHX4;;chr6:126240380..126240430,+!p2@NCOA7!0.96!21.76!NCOA7;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.36!TFAP2C;;chr7:1577899..1577943,+!p3@MAFK!0.95!7.94!MAFK;;chr11:12696071..12696086,+!p3@TEAD1!0.94!10.36!TEAD1;;chr11:19262421..19262455,-!p3@E2F8!0.93!7.60!E2F8;;chr5:172662230..172662241,-!p3@NKX2-5!0.92!7.25!NKX2-5;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.25!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!0.92!7.25!HES2;;chr9:2158443..2158481,+!p2@SMARCA2!0.90!20.38!SMARCA2;;chr1:151032922..151032951,+!p2@MLLT11!0.90!11.74!MLLT11;;chr7:149470540..149470596,-!p2@ZNF467!0.90!9.33!ZNF467;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.90!6.91!SEBOX;;chr20:42295713..42295738,+!p2@MYBL2!0.88!41.45!MYBL2;;chr12:54332608..54332636,+!p1@HOXC13!0.88!6.56!HOXC13;;chr6:1389789..1389821,+!p1@FOXF2!0.87!8.98!FOXF2;;chr2:185463247..185463263,+!p1@ZNF804A!0.86!11.40!ZNF804A;;chr6:10415484..10415508,-!p3@TFAP2A!0.86!6.22!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.86!6.22!CUX1;;chr7:149470641..149470694,-!p1@ZNF467!0.84!28.67!ZNF467;;chr7:156803329..156803362,-!p1@MNX1!0.84!5.87!MNX1;;chr20:32274179..32274213,-!p1@E2F1!0.80!38.00!E2F1;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.54!TEAD4;;chr1:935398..935465,-!p2@HES4!0.79!11.40!HES4;;chr7:1577111..1577132,+!p4@MAFK!0.79!5.87!MAFK;;chr5:2751785..2751808,-!p2@IRX2!0.79!5.18!IRX2;;chr17:41277372..41277418,-!p1@BRCA1!0.78!19.69!BRCA1;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr19:24097706..24097731,+!p2@ZNF726!0.76!9.67!ZNF726;;chr7:19157043..19157088,-!p2@TWIST1!0.74!12.09!TWIST1;;chr16:67198633..67198671,+!p1@HSF4!0.74!4.49!HSF4;;chr6:20402102..20402152,+!p1@E2F3!0.73!20.03!E2F3;;chr20:31350184..31350200,+!p1@DNMT3B!0.70!8.98!DNMT3B;;chr20:62680984..62680999,-!p1@SOX18!0.70!5.53!SOX18;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.56!PAWR;;chr12:124873852..124873881,-!p3@NCOR2!0.68!26.25!NCOR2;;chr12:3068634..3068656,+!p5@TEAD4!0.68!3.80!TEAD4;;chr13:100623375..100623425,-!p1@ZIC5!0.68!3.80!ZIC5;;chr5:3595977..3595999,+!p1@IRX1!0.68!3.80!IRX1;;chr7:35293665..35293680,-!p2@TBX20!0.68!3.80!TBX20;;chr9:129376201..129376225,+!p1@LMX1B!0.68!3.80!LMX1B;;chr4:4861385..4861398,+!p1@MSX1!0.67!12.09!MSX1;;chr16:1429627..1429662,-!p2@UNKL!0.67!12.09!UNKL;;chr7:19157248..19157268,-!p1@TWIST1!0.67!11.40!TWIST1;;chr8:60031619..60031676,-!p1@TOX!0.67!8.64!TOX;;chr19:35759976..35760042,+!p4@USF2!0.66!21.76!USF2;;chr8:145669791..145669834,-!p1@TONSL!0.66!11.40!TONSL;;chr8:60031682..60031710,-!p2@TOX!0.66!6.22!TOX;;chr14:37131058..37131139,+!p1@PAX9!0.65!3.45!PAX9;;chrY:21906594..21906622,-!p1@KDM5D!0.65!3.45!KDM5D;;chr1:201979743..201979762,+!p1@ELF3!0.65!3.45!ELF3;;chr17:41623692..41623715,-!p1@ETV4!0.64!16.58!ETV4;;chr10:48355030..48355090,+!p1@ZNF488!0.64!4.49!ZNF488;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.49!NCOA7;;chr4:4291861..4291913,-!p1@LYAR!0.63!89.81!LYAR;;chr3:128206762..128206781,-!p2@GATA2!0.62!23.49!GATA2;;chr15:37392094..37392116,-!p6@MEIS2!0.62!4.15!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.62!3.80!BNC1;;chr1:935467..935484,-!p1@HES4!0.61!15.89!HES4;;chr2:172949484..172949522,+!p1@DLX1!0.61!3.11!DLX1;;chr11:31832610..31832639,-!p5@PAX6!0.61!3.11!PAX6;;chr15:67418177..67418204,+!p9@SMAD3!0.61!3.11!SMAD3;;chr17:38501500..38501517,+!p13@RARA!0.61!3.11!RARA;;chr9:126774018..126774055,+!p1@LHX2!0.61!3.11!LHX2;;chr19:1592714..1592762,-!p1@MBD3!0.60!26.94!MBD3;;chr6:126240356..126240379,+!p7@NCOA7!0.60!3.80!NCOA7;;chr17:7590797..7590815,-!p1@TP53!0.59!155.44!TP53;;chr12:2986275..2986363,-!p1@FOXM1!0.59!34.89!FOXM1;;chr6:19837592..19837621,+!p1@ID4!0.59!21.42!ID4;;chr4:4291837..4291859,-!p2@LYAR!0.59!11.05!LYAR;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.25!GLI2;;chr9:99180617..99180658,-!p1@ZNF367!0.59!7.25!ZNF367;;chr1:151032739..151032748,+!p6@MLLT11!0.59!3.80!MLLT11;;chr7:77428149..77428220,+!p1@PHTF2!0.58!34.54!PHTF2;;chr4:8873716..8873738,-!p2@HMX1!0.58!2.76!HMX1;;chr5:134369879..134369898,-!p2@PITX1!0.58!2.76!PITX1;;chr6:10415263..10415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|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=FF:0102424
|fonse_cell_line=FF:0102424
|fonse_cell_line_closure=FF:0102424
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Line 36: Line 41:
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Line 44: Line 60:
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Line 59: Line 78:
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|sample_cell_line=No36
Line 80: Line 100:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.41124518203;bHLH_family:1.17359555866;E2F1..5:1.12261672852;TP53:1.11089997679;ELK1,4_GABP{A,B1}:1.06983922591;NRF1:0.963425720593;ADNP_IRX_SIX_ZHX:0.957752380811;POU1F1:0.922325851028;IKZF1:0.853141394137;TEAD1:0.849570002378;HOXA9_MEIS1:0.801273248859;EVI1:0.70766206112;PPARG:0.702591784552;FOXL1:0.693141798396;ESRRA:0.684982304129;NFY{A,B,C}:0.659483034019;HES1:0.631689263662;SREBF1,2:0.625134565786;STAT5{A,B}:0.615359330211;ZNF143:0.608368136069;AIRE:0.595463659171;MYB:0.593990638214;NR5A1,2:0.580129485456;ALX4:0.547977088986;GFI1:0.546825087927;LHX3,4:0.54106198438;TLX1..3_NFIC{dimer}:0.499687921042;NKX2-1,4:0.430964430307;NFE2L2:0.430414439488;TEF:0.42188902276;NR3C1:0.421842266381;RBPJ:0.410268420318;NR6A1:0.406041363131;HOX{A5,B5}:0.369533290178;PAX1,9:0.352597696205;RXR{A,B,G}:0.330168926648;NKX6-1,2:0.327759030965;NFE2:0.324926910959;ZBTB16:0.317067498421;YY1:0.3022593442;UFEwm:0.294752909494;TFDP1:0.267166929182;NR1H4:0.255054442546;NKX2-3_NKX2-5:0.233693029775;GCM1,2:0.218422282805;OCT4_SOX2{dimer}:0.156721023404;FOXQ1:0.154077967222;NKX3-1:0.14196592854;SRF:0.136561964568;HNF4A_NR2F1,2:0.100580242084;LMO2:0.0796792660698;MYOD1:0.0679051991199;IKZF2:0.0497695867459;PAX8:0.0458788796962;NKX3-2:0.0419061825971;MYBL2:0.0352128707174;PBX1:0.0317643371733;PRRX1,2:0.0239242398501;EN1,2:0.0129254946158;NFE2L1:0.0101084167268;CDX1,2,4:0.00751080966292;ARID5B:0.00143661579569;FOS_FOS{B,L1}_JUN{B,D}:-0.00656102472246;ONECUT1,2:-0.0114077926115;GTF2A1,2:-0.0134934498626;LEF1_TCF7_TCF7L1,2:-0.0282763520391;ZNF423:-0.0347655526932;HOX{A6,A7,B6,B7}:-0.0354845536951;ZNF384:-0.0371810005249;POU3F1..4:-0.0392751687406;BACH2:-0.0559156291688;PAX2:-0.0571880553041;FOSL2:-0.0736205383836;PITX1..3:-0.076529621826;TOPORS:-0.0881549363785;CRX:-0.0992061921165;FOXA2:-0.103627517331;ZNF148:-0.118681570447;MEF2{A,B,C,D}:-0.122279588755;NKX2-2,8:-0.15033179405;ZIC1..3:-0.161898079303;TFCP2:-0.176293280136;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.178774620069;PAX5:-0.181401140846;SOX{8,9,10}:-0.185128679796;NFKB1_REL_RELA:-0.190478905719;HNF1A:-0.202158452594;HIC1:-0.21370086035;T:-0.215952662902;TBX4,5:-0.229318148979;HOX{A4,D4}:-0.230983677925;VSX1,2:-0.233782005962;RFX1:-0.268988447356;SNAI1..3:-0.269191025505;ELF1,2,4:-0.269209942455;CREB1:-0.272710354913;GFI1B:-0.275963895591;GATA4:-0.278011449628;IRF7:-0.281673268153;SOX17:-0.28211649543;GTF2I:-0.283472680185;ATF4:-0.288985223983;CEBPA,B_DDIT3:-0.293056021873;PAX4:-0.29697085213;STAT2,4,6:-0.304022023613;GATA6:-0.310236320765;MAFB:-0.312116793946;FOXD3:-0.317653917499;IRF1,2:-0.319625406304;POU5F1:-0.32410333889;SMAD1..7,9:-0.332044083956;HLF:-0.336053937824;ZEB1:-0.337364221069;POU2F1..3:-0.341356201016;REST:-0.349602458259;ATF5_CREB3:-0.356601116031;FOX{F1,F2,J1}:-0.363683951579;TFAP2B:-0.379495539573;BREu{core}:-0.388625717927;PDX1:-0.409997031541;FOXP1:-0.414185697487;POU6F1:-0.442056007305;GLI1..3:-0.449812253172;XCPE1{core}:-0.451050021488;TBP:-0.480570602547;MAZ:-0.49462668823;NFATC1..3:-0.495790010021;CUX2:-0.497551986024;ESR1:-0.512891760272;STAT1,3:-0.532683700921;FOXP3:-0.537700623094;AHR_ARNT_ARNT2:-0.537794355966;FOX{I1,J2}:-0.539862678823;KLF4:-0.543580676266;RXRA_VDR{dimer}:-0.547301572418;ZFP161:-0.554001003556;FOXM1:-0.559559074968;EP300:-0.572900220166;SOX2:-0.573274898632;HMGA1,2:-0.588575783811;NHLH1,2:-0.622880011591;CDC5L:-0.631373953794;RUNX1..3:-0.63371639162;NANOG{mouse}:-0.633781429988;SPI1:-0.634370496324;EBF1:-0.635972391477;TFAP2{A,C}:-0.641354821543;SPIB:-0.64674193986;SPZ1:-0.660757375027;ATF2:-0.66505767942;HSF1,2:-0.671660248552;RFX2..5_RFXANK_RFXAP:-0.676008087186;GZF1:-0.680631415703;HIF1A:-0.683931092441;RREB1:-0.708269952968;MTF1:-0.709967474905;SP1:-0.714979375865;FOXN1:-0.720426696508;NANOG:-0.723048654269;PAX6:-0.725397350992;EGR1..3:-0.726950422961;PATZ1:-0.755102265891;MTE{core}:-0.76070888621;HAND1,2:-0.760981992039;PRDM1:-0.761841917242;TGIF1:-0.769624988694;TAL1_TCF{3,4,12}:-0.780399293956;RORA:-0.78702569727;AR:-0.790103016303;ALX1:-0.790488638286;DMAP1_NCOR{1,2}_SMARC:-0.795509005542;ETS1,2:-0.795697090095;SOX5:-0.817573425367;ZBTB6:-0.876953693976;HMX1:-0.891530690648;MYFfamily:-0.894183927759;FOXO1,3,4:-0.904830001258;JUN:-0.905246176482;TFAP4:-0.92907016829;FOX{D1,D2}:-0.96310020261;TLX2:-0.965325419243;DBP:-0.974696282616;XBP1:-0.976206940761;NFIX:-0.976589085817;BPTF:-1.07118064029;HBP1_HMGB_SSRP1_UBTF:-1.08061316436;MED-1{core}:-1.08962118486;PAX3,7:-1.09519293104;NFIL3:-1.11144402503;ATF6:-1.12348342297;MZF1:-1.17783130567;ZNF238:-1.24746207305
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.41124518203;bHLH_family:1.17359555866;E2F1..5:1.12261672852;TP53:1.11089997679;ELK1,4_GABP{A,B1}:1.06983922591;NRF1:0.963425720593;ADNP_IRX_SIX_ZHX:0.957752380811;POU1F1:0.922325851028;IKZF1:0.853141394137;TEAD1:0.849570002378;HOXA9_MEIS1:0.801273248859;EVI1:0.70766206112;PPARG:0.702591784552;FOXL1:0.693141798396;ESRRA:0.684982304129;NFY{A,B,C}:0.659483034019;HES1:0.631689263662;SREBF1,2:0.625134565786;STAT5{A,B}:0.615359330211;ZNF143:0.608368136069;AIRE:0.595463659171;MYB:0.593990638214;NR5A1,2:0.580129485456;ALX4:0.547977088986;GFI1:0.546825087927;LHX3,4:0.54106198438;TLX1..3_NFIC{dimer}:0.499687921042;NKX2-1,4:0.430964430307;NFE2L2:0.430414439488;TEF:0.42188902276;NR3C1:0.421842266381;RBPJ:0.410268420318;NR6A1:0.406041363131;HOX{A5,B5}:0.369533290178;PAX1,9:0.352597696205;RXR{A,B,G}:0.330168926648;NKX6-1,2:0.327759030965;NFE2:0.324926910959;ZBTB16:0.317067498421;YY1:0.3022593442;UFEwm:0.294752909494;TFDP1:0.267166929182;NR1H4:0.255054442546;NKX2-3_NKX2-5:0.233693029775;GCM1,2:0.218422282805;OCT4_SOX2{dimer}:0.156721023404;FOXQ1:0.154077967222;NKX3-1:0.14196592854;SRF:0.136561964568;HNF4A_NR2F1,2:0.100580242084;LMO2:0.0796792660698;MYOD1:0.0679051991199;IKZF2:0.0497695867459;PAX8:0.0458788796962;NKX3-2:0.0419061825971;MYBL2:0.0352128707174;PBX1:0.0317643371733;PRRX1,2:0.0239242398501;EN1,2:0.0129254946158;NFE2L1:0.0101084167268;CDX1,2,4:0.00751080966292;ARID5B:0.00143661579569;FOS_FOS{B,L1}_JUN{B,D}:-0.00656102472246;ONECUT1,2:-0.0114077926115;GTF2A1,2:-0.0134934498626;LEF1_TCF7_TCF7L1,2:-0.0282763520391;ZNF423:-0.0347655526932;HOX{A6,A7,B6,B7}:-0.0354845536951;ZNF384:-0.0371810005249;POU3F1..4:-0.0392751687406;BACH2:-0.0559156291688;PAX2:-0.0571880553041;FOSL2:-0.0736205383836;PITX1..3:-0.076529621826;TOPORS:-0.0881549363785;CRX:-0.0992061921165;FOXA2:-0.103627517331;ZNF148:-0.118681570447;MEF2{A,B,C,D}:-0.122279588755;NKX2-2,8:-0.15033179405;ZIC1..3:-0.161898079303;TFCP2:-0.176293280136;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.178774620069;PAX5:-0.181401140846;SOX{8,9,10}:-0.185128679796;NFKB1_REL_RELA:-0.190478905719;HNF1A:-0.202158452594;HIC1:-0.21370086035;T:-0.215952662902;TBX4,5:-0.229318148979;HOX{A4,D4}:-0.230983677925;VSX1,2:-0.233782005962;RFX1:-0.268988447356;SNAI1..3:-0.269191025505;ELF1,2,4:-0.269209942455;CREB1:-0.272710354913;GFI1B:-0.275963895591;GATA4:-0.278011449628;IRF7:-0.281673268153;SOX17:-0.28211649543;GTF2I:-0.283472680185;ATF4:-0.288985223983;CEBPA,B_DDIT3:-0.293056021873;PAX4:-0.29697085213;STAT2,4,6:-0.304022023613;GATA6:-0.310236320765;MAFB:-0.312116793946;FOXD3:-0.317653917499;IRF1,2:-0.319625406304;POU5F1:-0.32410333889;SMAD1..7,9:-0.332044083956;HLF:-0.336053937824;ZEB1:-0.337364221069;POU2F1..3:-0.341356201016;REST:-0.349602458259;ATF5_CREB3:-0.356601116031;FOX{F1,F2,J1}:-0.363683951579;TFAP2B:-0.379495539573;BREu{core}:-0.388625717927;PDX1:-0.409997031541;FOXP1:-0.414185697487;POU6F1:-0.442056007305;GLI1..3:-0.449812253172;XCPE1{core}:-0.451050021488;TBP:-0.480570602547;MAZ:-0.49462668823;NFATC1..3:-0.495790010021;CUX2:-0.497551986024;ESR1:-0.512891760272;STAT1,3:-0.532683700921;FOXP3:-0.537700623094;AHR_ARNT_ARNT2:-0.537794355966;FOX{I1,J2}:-0.539862678823;KLF4:-0.543580676266;RXRA_VDR{dimer}:-0.547301572418;ZFP161:-0.554001003556;FOXM1:-0.559559074968;EP300:-0.572900220166;SOX2:-0.573274898632;HMGA1,2:-0.588575783811;NHLH1,2:-0.622880011591;CDC5L:-0.631373953794;RUNX1..3:-0.63371639162;NANOG{mouse}:-0.633781429988;SPI1:-0.634370496324;EBF1:-0.635972391477;TFAP2{A,C}:-0.641354821543;SPIB:-0.64674193986;SPZ1:-0.660757375027;ATF2:-0.66505767942;HSF1,2:-0.671660248552;RFX2..5_RFXANK_RFXAP:-0.676008087186;GZF1:-0.680631415703;HIF1A:-0.683931092441;RREB1:-0.708269952968;MTF1:-0.709967474905;SP1:-0.714979375865;FOXN1:-0.720426696508;NANOG:-0.723048654269;PAX6:-0.725397350992;EGR1..3:-0.726950422961;PATZ1:-0.755102265891;MTE{core}:-0.76070888621;HAND1,2:-0.760981992039;PRDM1:-0.761841917242;TGIF1:-0.769624988694;TAL1_TCF{3,4,12}:-0.780399293956;RORA:-0.78702569727;AR:-0.790103016303;ALX1:-0.790488638286;DMAP1_NCOR{1,2}_SMARC:-0.795509005542;ETS1,2:-0.795697090095;SOX5:-0.817573425367;ZBTB6:-0.876953693976;HMX1:-0.891530690648;MYFfamily:-0.894183927759;FOXO1,3,4:-0.904830001258;JUN:-0.905246176482;TFAP4:-0.92907016829;FOX{D1,D2}:-0.96310020261;TLX2:-0.965325419243;DBP:-0.974696282616;XBP1:-0.976206940761;NFIX:-0.976589085817;BPTF:-1.07118064029;HBP1_HMGB_SSRP1_UBTF:-1.08061316436;MED-1{core}:-1.08962118486;PAX3,7:-1.09519293104;NFIL3:-1.11144402503;ATF6:-1.12348342297;MZF1:-1.17783130567;ZNF238:-1.24746207305
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10857-111G2;search_select_hide=table117:FF:10857-111G2
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:mesothelioma cell line:No36
Species:Human (Homo sapiens)
Library ID:CNhs13074
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineNo36
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005424
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13074 CAGE DRX007950 DRR008822
Accession ID Hg19

Library idBAMCTSS
CNhs13074 DRZ000247 DRZ001632
Accession ID Hg38

Library idBAMCTSS
CNhs13074 DRZ011597 DRZ012982
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.285
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.501
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.129
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.03
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.198
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00714
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00722
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.359
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.595
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.129
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.129
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13074

Jaspar motifP-value
MA0002.20.365
MA0003.10.272
MA0004.10.0022
MA0006.10.945
MA0007.10.292
MA0009.10.595
MA0014.10.497
MA0017.10.981
MA0018.20.00768
MA0019.10.911
MA0024.17.07753e-5
MA0025.10.693
MA0027.10.0724
MA0028.14.76176e-6
MA0029.10.187
MA0030.10.0717
MA0031.10.00277
MA0035.20.0653
MA0038.10.193
MA0039.20.0593
MA0040.10.404
MA0041.10.858
MA0042.10.178
MA0043.10.00853
MA0046.10.451
MA0047.20.308
MA0048.10.0585
MA0050.10.395
MA0051.10.398
MA0052.10.117
MA0055.14.42051e-5
MA0057.10.785
MA0058.16.55581e-5
MA0059.10.005
MA0060.12.47092e-6
MA0061.10.273
MA0062.26.01663e-4
MA0065.20.0272
MA0066.10.38
MA0067.10.811
MA0068.10.00485
MA0069.10.0887
MA0070.10.901
MA0071.10.172
MA0072.10.478
MA0073.10.954
MA0074.10.536
MA0076.13.91529e-5
MA0077.10.539
MA0078.10.785
MA0079.20.0535
MA0080.24.31208e-13
MA0081.10.183
MA0083.10.726
MA0084.10.835
MA0087.10.487
MA0088.12.7764e-4
MA0090.11.90369e-4
MA0091.10.206
MA0092.10.648
MA0093.11.78112e-4
MA0099.20.0832
MA0100.10.438
MA0101.10.999
MA0102.20.0236
MA0103.10.354
MA0104.20.00602
MA0105.10.674
MA0106.10.012
MA0107.10.357
MA0108.20.0593
MA0111.10.988
MA0112.20.00365
MA0113.10.579
MA0114.10.0681
MA0115.10.131
MA0116.10.364
MA0117.10.811
MA0119.10.135
MA0122.10.513
MA0124.10.384
MA0125.10.703
MA0131.10.657
MA0135.10.14
MA0136.18.09848e-8
MA0137.20.0281
MA0138.20.799
MA0139.10.399
MA0140.10.143
MA0141.10.0301
MA0142.10.199
MA0143.10.0956
MA0144.10.154
MA0145.10.773
MA0146.10.0606
MA0147.10.0061
MA0148.10.381
MA0149.10.0122
MA0150.14.64661e-4
MA0152.10.862
MA0153.10.859
MA0154.10.59
MA0155.10.469
MA0156.10.00197
MA0157.10.00397
MA0159.10.0878
MA0160.10.186
MA0162.10.0532
MA0163.10.193
MA0164.10.447
MA0258.10.0133
MA0259.10.121



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13074

Novel motifP-value
10.0121
100.123
1000.00395
1010.857
1020.344
1030.134
1040.738
1050.428
1060.00646
1070.361
1080.843
1090.019
110.577
1100.174
1110.261
1120.941
1130.11
1140.778
1150.99
1160.538
1170.254
1180.0359
1190.185
120.874
1200.298
1210.833
1220.69
1230.328
1240.547
1250.803
1260.27
1270.868
1280.00394
1290.712
132.41803e-4
1300.636
1310.403
1320.368
1330.272
1340.636
1350.307
1360.00633
1370.111
1380.776
1390.978
140.463
1400.627
1410.497
1420.512
1430.224
1440.374
1450.114
1460.676
1470.477
1480.379
1490.955
150.21
1500.833
1510.808
1520.988
1530.61
1540.166
1550.711
1560.144
1570.384
1580.571
1590.805
160.781
1600.428
1610.189
1620.544
1630.753
1640.0318
1650.575
1660.48
1670.406
1680.132
1690.0102
170.707
180.391
190.75
20.252
200.327
210.181
220.546
230.0386
240.279
250.779
260.772
270.938
280.868
290.0361
30.744
300.281
310.886
320.524
330.226
340.586
350.596
360.046
370.0915
380.805
390.66
40.826
409.88734e-4
410.376
420.56
430.965
440.211
450.583
460.408
470.0797
480.183
490.899
50.64
500.571
510.813
520.102
530.651
540.797
550.119
560.704
570.0242
580.302
590.596
60.651
600.0989
610.0982
620.55
630.546
640.534
650.452
660.0172
670.678
680.284
690.37
70.266
700.528
710.0183
720.392
730.175
740.978
750.0089
760.827
770.566
780.00239
790.814
80.0994
800.196
810.379
820.103
830.74
840.316
850.647
860.787
870.00467
880.555
890.552
90.323
900.657
910.353
920.0265
930.722
940.292
950.0816
960.798
970.624
980.211
990.498



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13074


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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