FF:11210-116A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005794 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005794 | ||
|HumanCAGEScanFiles=NCig10018;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008467;DRR009339;DRZ000764;DRZ002149;DRZ012114;DRZ013499 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037141;DRR041507;DRZ007149 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000168 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.97!92.71!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.65!43.22!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.49!36.94!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!119.19!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!32.06!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.38!23.00!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.37!38.34!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.25!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!1.30!27.18!BMP2;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!29.97!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.21!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.27!514.41!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!1.22!20.21!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.43!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.33!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!58.55!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!1.17!52.97!HHEX;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.94!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.34!FOXD1;;chr11:34642612..34642646,+!p1@EHF!1.15!13.24!EHF;;chr11:65667884..65667895,-!p2@FOSL1!1.14!49.49!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!1.13!12.55!ZFY;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.21!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.85!RFX8;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.18!FOSL1;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.85!TCF4;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.73!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.70!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.99!9.76!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.55!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.96!23.00!OSR1;;chr15:57511609..57511651,+!p2@TCF12!0.96!13.94!TCF12;;chr15:83953397..83953425,-!p1@BNC1!0.95!9.06!BNC1;;chr12:124873852..124873881,-!p3@NCOR2!0.94!48.10!NCOR2;;chr2:121493425..121493474,+!p1@GLI2!0.94!17.43!GLI2;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.67!KDM5D;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.67!TBX20;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.61!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.92!41.82!CREB3;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.46!NFIX;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.97!HOXB5;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.97!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.88!9.06!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.36!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!0.86!7.67!POU2F3;;chr12:66218923..66218934,+!p14@HMGA2!0.86!6.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.86!6.27!RFX8;;chr12:124873357..124873401,-!p1@NCOR2!0.85!75.98!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.84!19.52!TBX2;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.94!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.06!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.03!HMGA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.36!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.82!5.58!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.82!5.58!HOXA3;;chr6:34204672..34204692,+!p1@HMGA1!0.81!665.67!HMGA1;;chr7:137686763..137686784,-!p5@CREB3L2!0.81!9.76!CREB3L2;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.10!TBX3;;chr2:121493492..121493537,+!p2@GLI2!0.80!9.06!GLI2;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.64!ARNTL2;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.64!HIC1;;chr8:145159846..145159889,+!p6@MAF1!0.79!7.67!MAF1;;chr19:13136130..13136165,+!p6@NFIX!0.79!6.97!NFIX;;chr17:46621937..46621966,-!p2@HOXB2!0.78!14.64!HOXB2;;chr9:35732592..35732640,+!p1@CREB3!0.77!71.79!CREB3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.92!ZC3H12A;;chr12:53614115..53614154,-!p1@RARG!0.77!28.58!RARG;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.40!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.77!16.73!GATA6;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.55!RBPJ;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.27!FOXD1;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.88!RFX8;;chr18:3448455..3448480,+!p5@TGIF1!0.75!9.06!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.97!HMGA2;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.79!HIF1A;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.27!DRAP1;;chr15:67418047..67418093,+!p4@SMAD3!0.72!5.58!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.71!62.73!HMGA1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.06!BHLHE40;;chr3:141087562..141087594,+!p12@ZBTB38!0.71!4.18!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.71!4.18!RARB;;chr5:72744336..72744359,-!p5@FOXD1!0.71!4.18!FOXD1;;chr8:25902876..25902936,-!p1@EBF2!0.71!4.18!EBF2;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.18!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.18!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.70!4.88!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.69!43.22!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.69!17.43!ZBTB38;;chr22:38598086..38598105,+!p1@MAFF!0.68!46.00!MAFF;;chr1:170632959..170632987,+!p4@PRRX1!0.68!4.18!PRRX1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.00!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.24!AHRR;;chr21:36260343..36260402,-!p6@RUNX1!0.67!6.27!RUNX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.66!295.54!TAX1BP3;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.97!ZFP106;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.58!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.65!10.46!HHEX;;chr14:61191018..61191048,-!p1@SIX4!0.65!8.36!SIX4;;chr17:41622765..41622821,-!p2@ETV4!0.65!5.58!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.65!4.88!TBX2;;chr15:67458491..67458505,+!p18@SMAD3!0.65!3.49!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.65!3.49!NR2F2;;chr16:86600458..86600461,+!p3@FOXC2!0.65!3.49!FOXC2;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.49!NFIX;;chr12:54447637..54447659,+!p4@HOXC4!0.65!3.49!HOXC4;;chr7:1577899..1577943,+!p3@MAFK!0.65!3.49!MAFK;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.49!HOXA3;;chr19:47523058..47523114,+!p1@NPAS1!0.65!3.49!NPAS1;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.49!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!0.63!6.27!ZNF804A;;chr12:26277929..26277955,-!p3@BHLHE41!0.63!4.88!BHLHE41;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.04!AEBP1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!44.61!MLLT11;;chr14:24837368..24837401,+!p1@NFATC4!0.62!8.36!NFATC4;;chr21:36260295..36260310,-!p3@RUNX1!0.62!5.58!RUNX1;;chr15:96869292..96869320,+!p15@NR2F2!0.62!4.88!NR2F2;;chr20:30193083..30193098,+!p1@ID1!0.61!304.61!ID1;;chr19:31840313..31840380,-!p1@TSHZ3!0.61!9.06!TSHZ3;;chr3:141121847..141121868,+!p5@ZBTB38!0.60!4.88!ZBTB38;;chr10:77161533..77161546,-!p2@ZNF503!0.58!13.24!ZNF503;;chr12:8185346..8185360,+!p2@FOXJ2!0.58!4.88!FOXJ2;;chr11:65686776..65686787,+!p9@DRAP1!0.58!3.49!DRAP1;;chr12:115122005..115122016,-!p3@TBX3!0.58!3.49!TBX3;;chr10:131762504..131762555,-!p1@EBF3!0.58!2.79!EBF3;;chr1:170632250..170632277,+!p7@PRRX1!0.58!2.79!PRRX1;;chr7:27169801..27169844,-!p2@HOXA4!0.58!2.79!HOXA4;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.79!HOXA5;;chr2:214016899..214016926,-!p10@IKZF2!0.58!2.79!IKZF2;;chr3:168864383..168864400,-!p7@MECOM!0.58!2.79!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.58!2.79!HAND2;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.79!ZNF668;;chr12:52445218..52445237,+!p1@NR4A1!0.57!42.52!NR4A1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.57!37.64!TAX1BP3;;chr17:1958388..1958404,+!p1@HIC1!0.57!20.91!HIC1;;chr19:52074502..52074587,+!p1@ZNF175!0.57!11.85!ZNF175;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.88!FOXQ1;;chr3:52001448..52001478,-!p2@PCBP4!0.56!45.31!PCBP4;;chr1:164528445..164528459,+!p2@PBX1!0.56!9.76!PBX1;;chr2:71127699..71127744,+!p1@VAX2!0.56!6.27!VAX2;;chr19:3366625..3366629,+!p4@NFIC!0.56!4.18!NFIC;;chr1:151032739..151032748,+!p6@MLLT11!0.56!3.49!MLLT11;;chr11:65686855..65686946,+!p1@DRAP1!0.55!242.57!DRAP1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.24!ZFHX4;;chr11:65430554..65430579,-!p3@RELA!0.55!7.67!RELA;;chr17:59477197..59477212,+!p2@TBX2!0.55!4.88!TBX2;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.18!HMGA2;;chr7:137686552..137686564,-!p9@CREB3L2!0.55!4.18!CREB3L2;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.85!PPARD;;chr19:45260775..45260838,+!p5@BCL3!0.54!3.49!BCL3;;chr3:178789522..178789564,-!p2@ZMAT3!0.53!22.31!ZMAT3;;chr12:27485785..27485816,+!p1@ARNTL2!0.53!20.91!ARNTL2;;chr7:14029283..14029311,-!p1@ETV1!0.53!16.03!ETV1;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr18:19749517..19749531,+!p3@GATA6!0.53!4.88!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.53!4.88!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.53!4.18!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.79!CREB3L1;;chr8:72756637..72756664,-!p3@MSC!0.53!2.79!MSC;;chr1:23885981..23886002,-!p1@ID3!0.52!529.05!ID3;;chr7:19157043..19157088,-!p2@TWIST1!0.52!6.97!TWIST1;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.88!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.52!4.88!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.52!4.88!NR2F2;;chr4:81105027..81105039,+!p3@PRDM8!0.52!2.79!PRDM8;;chr10:77161504..77161530,-!p1@ZNF503!0.51!39.03!ZNF503;;chr21:36259445..36259519,-!p4@RUNX1!0.51!7.67!RUNX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.51!4.18!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.18!MECOM;;chr10:35484804..35484902,+!p2@CREM!0.50!10.46!CREM;;chr12:66218183..66218209,+!p4@HMGA2!0.50!4.88!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.50!2.79!HOXC4;;chr4:2263809..2263854,-!p1@MXD4!0.49!108.74!MXD4;;chr19:45251943..45252006,+!p1@BCL3!0.49!73.89!BCL3;;chr11:62368696..62368759,-!p4@MTA2!0.49!16.73!MTA2;;chr2:66662281..66662308,+!p1@MEIS1!0.49!9.06!MEIS1;;chr4:81104895..81104920,+!p2@PRDM8!0.49!3.49!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.49!2.79!DPF1;;chr1:170632137..170632172,+!p10@PRRX1!0.49!2.09!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.49!2.09!PRRX1;;chr2:85981008..85981025,+!p7@ATOH8!0.49!2.09!ATOH8;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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.97!92.71!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.65!43.22!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.49!36.94!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!119.19!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!32.06!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.38!23.00!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.37!38.34!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.25!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!1.30!27.18!BMP2;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!29.97!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.21!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.27!514.41!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!1.22!20.21!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.43!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.33!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!58.55!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!1.17!52.97!HHEX;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.94!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.34!FOXD1;;chr11:34642612..34642646,+!p1@EHF!1.15!13.24!EHF;;chr11:65667884..65667895,-!p2@FOSL1!1.14!49.49!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!1.13!12.55!ZFY;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.21!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.85!RFX8;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.18!FOSL1;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.85!TCF4;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.73!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.70!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.99!9.76!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.55!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.96!23.00!OSR1;;chr15:57511609..57511651,+!p2@TCF12!0.96!13.94!TCF12;;chr15:83953397..83953425,-!p1@BNC1!0.95!9.06!BNC1;;chr12:124873852..124873881,-!p3@NCOR2!0.94!48.10!NCOR2;;chr2:121493425..121493474,+!p1@GLI2!0.94!17.43!GLI2;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.67!KDM5D;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.67!TBX20;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.61!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.92!41.82!CREB3;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.46!NFIX;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.97!HOXB5;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.97!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.88!9.06!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.36!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!0.86!7.67!POU2F3;;chr12:66218923..66218934,+!p14@HMGA2!0.86!6.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.86!6.27!RFX8;;chr12:124873357..124873401,-!p1@NCOR2!0.85!75.98!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.84!19.52!TBX2;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.94!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.06!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.03!HMGA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.36!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.82!5.58!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.82!5.58!HOXA3;;chr6:34204672..34204692,+!p1@HMGA1!0.81!665.67!HMGA1;;chr7:137686763..137686784,-!p5@CREB3L2!0.81!9.76!CREB3L2;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.10!TBX3;;chr2:121493492..121493537,+!p2@GLI2!0.80!9.06!GLI2;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.64!ARNTL2;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.64!HIC1;;chr8:145159846..145159889,+!p6@MAF1!0.79!7.67!MAF1;;chr19:13136130..13136165,+!p6@NFIX!0.79!6.97!NFIX;;chr17:46621937..46621966,-!p2@HOXB2!0.78!14.64!HOXB2;;chr9:35732592..35732640,+!p1@CREB3!0.77!71.79!CREB3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.92!ZC3H12A;;chr12:53614115..53614154,-!p1@RARG!0.77!28.58!RARG;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.40!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.77!16.73!GATA6;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.55!RBPJ;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.27!FOXD1;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.88!RFX8;;chr18:3448455..3448480,+!p5@TGIF1!0.75!9.06!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.97!HMGA2;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.79!HIF1A;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.27!DRAP1;;chr15:67418047..67418093,+!p4@SMAD3!0.72!5.58!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.71!62.73!HMGA1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.06!BHLHE40;;chr3:141087562..141087594,+!p12@ZBTB38!0.71!4.18!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.71!4.18!RARB;;chr5:72744336..72744359,-!p5@FOXD1!0.71!4.18!FOXD1;;chr8:25902876..25902936,-!p1@EBF2!0.71!4.18!EBF2;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.18!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.18!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.70!4.88!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.69!43.22!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.69!17.43!ZBTB38;;chr22:38598086..38598105,+!p1@MAFF!0.68!46.00!MAFF;;chr1:170632959..170632987,+!p4@PRRX1!0.68!4.18!PRRX1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.00!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.24!AHRR;;chr21:36260343..36260402,-!p6@RUNX1!0.67!6.27!RUNX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.66!295.54!TAX1BP3;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.97!ZFP106;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.58!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.65!10.46!HHEX;;chr14:61191018..61191048,-!p1@SIX4!0.65!8.36!SIX4;;chr17:41622765..41622821,-!p2@ETV4!0.65!5.58!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.65!4.88!TBX2;;chr15:67458491..67458505,+!p18@SMAD3!0.65!3.49!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.65!3.49!NR2F2;;chr16:86600458..86600461,+!p3@FOXC2!0.65!3.49!FOXC2;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.49!NFIX;;chr12:54447637..54447659,+!p4@HOXC4!0.65!3.49!HOXC4;;chr7:1577899..1577943,+!p3@MAFK!0.65!3.49!MAFK;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.49!HOXA3;;chr19:47523058..47523114,+!p1@NPAS1!0.65!3.49!NPAS1;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.49!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!0.63!6.27!ZNF804A;;chr12:26277929..26277955,-!p3@BHLHE41!0.63!4.88!BHLHE41;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.04!AEBP1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!44.61!MLLT11;;chr14:24837368..24837401,+!p1@NFATC4!0.62!8.36!NFATC4;;chr21:36260295..36260310,-!p3@RUNX1!0.62!5.58!RUNX1;;chr15:96869292..96869320,+!p15@NR2F2!0.62!4.88!NR2F2;;chr20:30193083..30193098,+!p1@ID1!0.61!304.61!ID1;;chr19:31840313..31840380,-!p1@TSHZ3!0.61!9.06!TSHZ3;;chr3:141121847..141121868,+!p5@ZBTB38!0.60!4.88!ZBTB38;;chr10:77161533..77161546,-!p2@ZNF503!0.58!13.24!ZNF503;;chr12:8185346..8185360,+!p2@FOXJ2!0.58!4.88!FOXJ2;;chr11:65686776..65686787,+!p9@DRAP1!0.58!3.49!DRAP1;;chr12:115122005..115122016,-!p3@TBX3!0.58!3.49!TBX3;;chr10:131762504..131762555,-!p1@EBF3!0.58!2.79!EBF3;;chr1:170632250..170632277,+!p7@PRRX1!0.58!2.79!PRRX1;;chr7:27169801..27169844,-!p2@HOXA4!0.58!2.79!HOXA4;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.79!HOXA5;;chr2:214016899..214016926,-!p10@IKZF2!0.58!2.79!IKZF2;;chr3:168864383..168864400,-!p7@MECOM!0.58!2.79!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.58!2.79!HAND2;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.79!ZNF668;;chr12:52445218..52445237,+!p1@NR4A1!0.57!42.52!NR4A1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.57!37.64!TAX1BP3;;chr17:1958388..1958404,+!p1@HIC1!0.57!20.91!HIC1;;chr19:52074502..52074587,+!p1@ZNF175!0.57!11.85!ZNF175;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.88!FOXQ1;;chr3:52001448..52001478,-!p2@PCBP4!0.56!45.31!PCBP4;;chr1:164528445..164528459,+!p2@PBX1!0.56!9.76!PBX1;;chr2:71127699..71127744,+!p1@VAX2!0.56!6.27!VAX2;;chr19:3366625..3366629,+!p4@NFIC!0.56!4.18!NFIC;;chr1:151032739..151032748,+!p6@MLLT11!0.56!3.49!MLLT11;;chr11:65686855..65686946,+!p1@DRAP1!0.55!242.57!DRAP1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.24!ZFHX4;;chr11:65430554..65430579,-!p3@RELA!0.55!7.67!RELA;;chr17:59477197..59477212,+!p2@TBX2!0.55!4.88!TBX2;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.18!HMGA2;;chr7:137686552..137686564,-!p9@CREB3L2!0.55!4.18!CREB3L2;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.85!PPARD;;chr19:45260775..45260838,+!p5@BCL3!0.54!3.49!BCL3;;chr3:178789522..178789564,-!p2@ZMAT3!0.53!22.31!ZMAT3;;chr12:27485785..27485816,+!p1@ARNTL2!0.53!20.91!ARNTL2;;chr7:14029283..14029311,-!p1@ETV1!0.53!16.03!ETV1;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr18:19749517..19749531,+!p3@GATA6!0.53!4.88!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.53!4.88!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.53!4.18!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.79!CREB3L1;;chr8:72756637..72756664,-!p3@MSC!0.53!2.79!MSC;;chr1:23885981..23886002,-!p1@ID3!0.52!529.05!ID3;;chr7:19157043..19157088,-!p2@TWIST1!0.52!6.97!TWIST1;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.88!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.52!4.88!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.52!4.88!NR2F2;;chr4:81105027..81105039,+!p3@PRDM8!0.52!2.79!PRDM8;;chr10:77161504..77161530,-!p1@ZNF503!0.51!39.03!ZNF503;;chr21:36259445..36259519,-!p4@RUNX1!0.51!7.67!RUNX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.51!4.18!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.18!MECOM;;chr10:35484804..35484902,+!p2@CREM!0.50!10.46!CREM;;chr12:66218183..66218209,+!p4@HMGA2!0.50!4.88!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.50!2.79!HOXC4;;chr4:2263809..2263854,-!p1@MXD4!0.49!108.74!MXD4;;chr19:45251943..45252006,+!p1@BCL3!0.49!73.89!BCL3;;chr11:62368696..62368759,-!p4@MTA2!0.49!16.73!MTA2;;chr2:66662281..66662308,+!p1@MEIS1!0.49!9.06!MEIS1;;chr4:81104895..81104920,+!p2@PRDM8!0.49!3.49!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.49!2.79!DPF1;;chr1:170632137..170632172,+!p10@PRRX1!0.49!2.09!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.49!2.09!PRRX1;;chr2:85981008..85981025,+!p7@ATOH8!0.49!2.09!ATOH8;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11210-116A4 | |id=FF:11210-116A4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000168 | ||
|is_obsolete= | |||
|library_id=CNhs10838 | |||
|library_id_phase_based=2:CNhs10838 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11210 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTAGAG.11210 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11210 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTAGAG.11210 | |||
|name=Smooth Muscle Cells - Aortic, donor0 | |name=Smooth Muscle Cells - Aortic, donor0 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10018,,, | |profile_cagescan=NCig10018,,, | ||
|profile_hcage=CNhs10838,LSID700,release009,COMPLETED | |profile_hcage=CNhs10838,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA354-R10a | |rna_catalog_number=CA354-R10a | ||
| Line 56: | Line 83: | ||
|rna_tube_id=116A4 | |rna_tube_id=116A4 | ||
|rna_weight_ug=25 | |rna_weight_ug=25 | ||
|rnaseq_library_id=SRhi10009.GTAGAG | |||
|sample_age=54 | |sample_age=54 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 106: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=GZF1:1.2794823125;PBX1:1.20439035637;POU2F1..3:1.17836141577;ZNF238:1.04593997488;GTF2A1,2:1.03977257293;CRX:1.01657912663;HIF1A:1.01653624015;XCPE1{core}:1.00342144478;EBF1:0.979147036323;HES1:0.949096433397;FOX{I1,J2}:0.940351714159;TFAP4:0.922160735311;TLX1..3_NFIC{dimer}:0.894822240588;POU6F1:0.876310027871;TBP:0.848903860323;ZBTB6:0.838752480921;POU3F1..4:0.807497044446;NFE2L1:0.796854809196;GCM1,2:0.786691518746;HOX{A5,B5}:0.752429206935;ZNF148:0.751292307725;HSF1,2:0.73005612529;EN1,2:0.7023972329;TP53:0.678954649814;CDC5L:0.668106947269;TAL1_TCF{3,4,12}:0.668061676995;TFAP2B:0.638032543999;LHX3,4:0.634658368215;ELK1,4_GABP{A,B1}:0.633380416321;PPARG:0.628961598029;NFE2L2:0.611054579755;TEAD1:0.602722517989;ONECUT1,2:0.585206240638;GFI1B:0.578407440363;SRF:0.575031547739;NFATC1..3:0.573019120096;HMX1:0.520719791531;bHLH_family:0.504725501205;BACH2:0.495636438003;FOS_FOS{B,L1}_JUN{B,D}:0.462111320897;MYBL2:0.46050942388;NKX2-2,8:0.444748446708;SPZ1:0.437403763729;TLX2:0.432011696272;NANOG:0.415362823633;ADNP_IRX_SIX_ZHX:0.414377363396;HIC1:0.413199321107;XBP1:0.399955508156;FOXL1:0.396474640618;PATZ1:0.391610771869;GTF2I:0.384182215901;ZNF423:0.374077476501;ALX4:0.372024296402;SOX17:0.355534384119;NR5A1,2:0.35390932614;NKX3-1:0.353693652679;PRRX1,2:0.347191014509;SMAD1..7,9:0.344846958349;AR:0.340722205409;HBP1_HMGB_SSRP1_UBTF:0.306779019165;JUN:0.293439631287;GLI1..3:0.288279230589;LEF1_TCF7_TCF7L1,2:0.282158072287;FOSL2:0.273892919904;MTE{core}:0.266711818494;STAT5{A,B}:0.263388223691;TFDP1:0.262665157728;IKZF1:0.260526371007;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.244002880738;EGR1..3:0.223467111558;RXRA_VDR{dimer}:0.223245920096;NR3C1:0.218145401804;VSX1,2:0.205267165717;MTF1:0.192322757029;PAX8:0.189652659578;TFCP2:0.188023925506;ZFP161:0.172705017813;NANOG{mouse}:0.163977843125;MAFB:0.16147513896;FOXM1:0.13184428287;NFE2:0.131821854549;HLF:0.129600996124;SOX{8,9,10}:0.129340281361;TBX4,5:0.123515578199;MZF1:0.122786402197;NR1H4:0.121766341269;HNF1A:0.109818743576;ESR1:0.10439064685;GFI1:0.0958866186328;NKX3-2:0.0919247385515;FOXQ1:0.0903983967489;TFAP2{A,C}:0.0896952390118;PDX1:0.0857949908176;HOX{A4,D4}:0.0847191650381;PAX5:0.0712495478465;ATF6:0.0601437277729;ARID5B:0.0553678380169;POU5F1:0.0550008522597;AHR_ARNT_ARNT2:0.0458151591014;NFIX:0.042459493298;MAZ:0.0328034031712;MED-1{core}:0.021087925213;ZNF384:0.0164058692771;SP1:0.014757563262;PAX3,7:0.0038146813329;CREB1:0.00134216366234;NKX6-1,2:-0.00549396828076;KLF4:-0.0180566026349;HOXA9_MEIS1:-0.0313288791072;MEF2{A,B,C,D}:-0.0336442120038;REST:-0.033669265516;ATF2:-0.0345041379881;DBP:-0.042262139385;CEBPA,B_DDIT3:-0.0439138934375;RXR{A,B,G}:-0.048319659864;ESRRA:-0.0518139890045;NHLH1,2:-0.0618724017166;E2F1..5:-0.0766004583232;PRDM1:-0.0788297832828;ZIC1..3:-0.0914913478487;NFIL3:-0.112994225742;GATA6:-0.116469307892;RUNX1..3:-0.117816765482;NFKB1_REL_RELA:-0.126949377959;HMGA1,2:-0.135553312668;ALX1:-0.138128490639;PAX2:-0.151730142739;YY1:-0.169811254936;ZNF143:-0.175673752138;PAX4:-0.188582377284;HAND1,2:-0.189979215907;RFX1:-0.19109058199;ELF1,2,4:-0.194945442312;NRF1:-0.204038749537;ETS1,2:-0.205437847583;DMAP1_NCOR{1,2}_SMARC:-0.206523408631;FOXN1:-0.208737771276;PAX1,9:-0.230860291076;SOX5:-0.257247527238;TOPORS:-0.265407718018;MYB:-0.281998751246;LMO2:-0.284260565839;MYFfamily:-0.286297372616;RREB1:-0.300392141989;EP300:-0.326737204448;UFEwm:-0.345115311415;HNF4A_NR2F1,2:-0.345712366297;NKX2-3_NKX2-5:-0.35055285635;OCT4_SOX2{dimer}:-0.358766783163;STAT2,4,6:-0.360367699375;PAX6:-0.361527778053;POU1F1:-0.367100415483;TGIF1:-0.405708695857;SPIB:-0.417961288975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.450101623373;NFY{A,B,C}:-0.461535725732;SPI1:-0.463103206791;ATF5_CREB3:-0.464795282644;HOX{A6,A7,B6,B7}:-0.477113760821;GATA4:-0.503802620945;PITX1..3:-0.515801944325;SOX2:-0.528154194386;EVI1:-0.536678933774;IRF1,2:-0.55886664937;CUX2:-0.597964470014;AIRE:-0.630371415859;FOX{D1,D2}:-0.637675786144;SREBF1,2:-0.64618333895;FOX{F1,F2,J1}:-0.671366971637;TEF:-0.676688097743;RORA:-0.687966664941;RFX2..5_RFXANK_RFXAP:-0.719713450493;BREu{core}:-0.75496112602;IRF7:-0.791409282736;NR6A1:-0.791775360997;ATF4:-0.791841551181;ZEB1:-0.806645025828;SNAI1..3:-0.817318495922;STAT1,3:-0.861995668013;NKX2-1,4:-0.881517547875;MYOD1:-0.897384389708;FOXP3:-0.96361390615;FOXA2:-1.01240941566;BPTF:-1.04382841024;ZBTB16:-1.07406217124;CDX1,2,4:-1.16341883224;IKZF2:-1.17369191091;T:-1.20952707474;FOXP1:-1.21940472811;FOXO1,3,4:-1.22446070071;FOXD3:-1.6708830007;RBPJ:-1.69245140791 | |top_motifs=GZF1:1.2794823125;PBX1:1.20439035637;POU2F1..3:1.17836141577;ZNF238:1.04593997488;GTF2A1,2:1.03977257293;CRX:1.01657912663;HIF1A:1.01653624015;XCPE1{core}:1.00342144478;EBF1:0.979147036323;HES1:0.949096433397;FOX{I1,J2}:0.940351714159;TFAP4:0.922160735311;TLX1..3_NFIC{dimer}:0.894822240588;POU6F1:0.876310027871;TBP:0.848903860323;ZBTB6:0.838752480921;POU3F1..4:0.807497044446;NFE2L1:0.796854809196;GCM1,2:0.786691518746;HOX{A5,B5}:0.752429206935;ZNF148:0.751292307725;HSF1,2:0.73005612529;EN1,2:0.7023972329;TP53:0.678954649814;CDC5L:0.668106947269;TAL1_TCF{3,4,12}:0.668061676995;TFAP2B:0.638032543999;LHX3,4:0.634658368215;ELK1,4_GABP{A,B1}:0.633380416321;PPARG:0.628961598029;NFE2L2:0.611054579755;TEAD1:0.602722517989;ONECUT1,2:0.585206240638;GFI1B:0.578407440363;SRF:0.575031547739;NFATC1..3:0.573019120096;HMX1:0.520719791531;bHLH_family:0.504725501205;BACH2:0.495636438003;FOS_FOS{B,L1}_JUN{B,D}:0.462111320897;MYBL2:0.46050942388;NKX2-2,8:0.444748446708;SPZ1:0.437403763729;TLX2:0.432011696272;NANOG:0.415362823633;ADNP_IRX_SIX_ZHX:0.414377363396;HIC1:0.413199321107;XBP1:0.399955508156;FOXL1:0.396474640618;PATZ1:0.391610771869;GTF2I:0.384182215901;ZNF423:0.374077476501;ALX4:0.372024296402;SOX17:0.355534384119;NR5A1,2:0.35390932614;NKX3-1:0.353693652679;PRRX1,2:0.347191014509;SMAD1..7,9:0.344846958349;AR:0.340722205409;HBP1_HMGB_SSRP1_UBTF:0.306779019165;JUN:0.293439631287;GLI1..3:0.288279230589;LEF1_TCF7_TCF7L1,2:0.282158072287;FOSL2:0.273892919904;MTE{core}:0.266711818494;STAT5{A,B}:0.263388223691;TFDP1:0.262665157728;IKZF1:0.260526371007;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.244002880738;EGR1..3:0.223467111558;RXRA_VDR{dimer}:0.223245920096;NR3C1:0.218145401804;VSX1,2:0.205267165717;MTF1:0.192322757029;PAX8:0.189652659578;TFCP2:0.188023925506;ZFP161:0.172705017813;NANOG{mouse}:0.163977843125;MAFB:0.16147513896;FOXM1:0.13184428287;NFE2:0.131821854549;HLF:0.129600996124;SOX{8,9,10}:0.129340281361;TBX4,5:0.123515578199;MZF1:0.122786402197;NR1H4:0.121766341269;HNF1A:0.109818743576;ESR1:0.10439064685;GFI1:0.0958866186328;NKX3-2:0.0919247385515;FOXQ1:0.0903983967489;TFAP2{A,C}:0.0896952390118;PDX1:0.0857949908176;HOX{A4,D4}:0.0847191650381;PAX5:0.0712495478465;ATF6:0.0601437277729;ARID5B:0.0553678380169;POU5F1:0.0550008522597;AHR_ARNT_ARNT2:0.0458151591014;NFIX:0.042459493298;MAZ:0.0328034031712;MED-1{core}:0.021087925213;ZNF384:0.0164058692771;SP1:0.014757563262;PAX3,7:0.0038146813329;CREB1:0.00134216366234;NKX6-1,2:-0.00549396828076;KLF4:-0.0180566026349;HOXA9_MEIS1:-0.0313288791072;MEF2{A,B,C,D}:-0.0336442120038;REST:-0.033669265516;ATF2:-0.0345041379881;DBP:-0.042262139385;CEBPA,B_DDIT3:-0.0439138934375;RXR{A,B,G}:-0.048319659864;ESRRA:-0.0518139890045;NHLH1,2:-0.0618724017166;E2F1..5:-0.0766004583232;PRDM1:-0.0788297832828;ZIC1..3:-0.0914913478487;NFIL3:-0.112994225742;GATA6:-0.116469307892;RUNX1..3:-0.117816765482;NFKB1_REL_RELA:-0.126949377959;HMGA1,2:-0.135553312668;ALX1:-0.138128490639;PAX2:-0.151730142739;YY1:-0.169811254936;ZNF143:-0.175673752138;PAX4:-0.188582377284;HAND1,2:-0.189979215907;RFX1:-0.19109058199;ELF1,2,4:-0.194945442312;NRF1:-0.204038749537;ETS1,2:-0.205437847583;DMAP1_NCOR{1,2}_SMARC:-0.206523408631;FOXN1:-0.208737771276;PAX1,9:-0.230860291076;SOX5:-0.257247527238;TOPORS:-0.265407718018;MYB:-0.281998751246;LMO2:-0.284260565839;MYFfamily:-0.286297372616;RREB1:-0.300392141989;EP300:-0.326737204448;UFEwm:-0.345115311415;HNF4A_NR2F1,2:-0.345712366297;NKX2-3_NKX2-5:-0.35055285635;OCT4_SOX2{dimer}:-0.358766783163;STAT2,4,6:-0.360367699375;PAX6:-0.361527778053;POU1F1:-0.367100415483;TGIF1:-0.405708695857;SPIB:-0.417961288975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.450101623373;NFY{A,B,C}:-0.461535725732;SPI1:-0.463103206791;ATF5_CREB3:-0.464795282644;HOX{A6,A7,B6,B7}:-0.477113760821;GATA4:-0.503802620945;PITX1..3:-0.515801944325;SOX2:-0.528154194386;EVI1:-0.536678933774;IRF1,2:-0.55886664937;CUX2:-0.597964470014;AIRE:-0.630371415859;FOX{D1,D2}:-0.637675786144;SREBF1,2:-0.64618333895;FOX{F1,F2,J1}:-0.671366971637;TEF:-0.676688097743;RORA:-0.687966664941;RFX2..5_RFXANK_RFXAP:-0.719713450493;BREu{core}:-0.75496112602;IRF7:-0.791409282736;NR6A1:-0.791775360997;ATF4:-0.791841551181;ZEB1:-0.806645025828;SNAI1..3:-0.817318495922;STAT1,3:-0.861995668013;NKX2-1,4:-0.881517547875;MYOD1:-0.897384389708;FOXP3:-0.96361390615;FOXA2:-1.01240941566;BPTF:-1.04382841024;ZBTB16:-1.07406217124;CDX1,2,4:-1.16341883224;IKZF2:-1.17369191091;T:-1.20952707474;FOXP1:-1.21940472811;FOXO1,3,4:-1.22446070071;FOXD3:-1.6708830007;RBPJ:-1.69245140791 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11210-116A4;search_select_hide=table117:FF:11210-116A4 | |||
}} | }} | ||
Latest revision as of 16:24, 3 June 2020
| Name: | Smooth Muscle Cells - Aortic, donor0 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10838 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10838
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10838
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.765 |
| 10 | 10 | 0.192 |
| 100 | 100 | 0.508 |
| 101 | 101 | 0.0308 |
| 102 | 102 | 0.494 |
| 103 | 103 | 0.785 |
| 104 | 104 | 0.477 |
| 105 | 105 | 0.484 |
| 106 | 106 | 0.439 |
| 107 | 107 | 0.519 |
| 108 | 108 | 0.428 |
| 109 | 109 | 0.432 |
| 11 | 11 | 0.619 |
| 110 | 110 | 0.898 |
| 111 | 111 | 0.0789 |
| 112 | 112 | 0.347 |
| 113 | 113 | 0.0195 |
| 114 | 114 | 0.555 |
| 115 | 115 | 0.966 |
| 116 | 116 | 0.0984 |
| 117 | 117 | 0.408 |
| 118 | 118 | 0.376 |
| 119 | 119 | 0.99 |
| 12 | 12 | 0.208 |
| 120 | 120 | 0.977 |
| 121 | 121 | 0.507 |
| 122 | 122 | 0.584 |
| 123 | 123 | 0.0457 |
| 124 | 124 | 0.421 |
| 125 | 125 | 0.811 |
| 126 | 126 | 0.672 |
| 127 | 127 | 0.951 |
| 128 | 128 | 0.822 |
| 129 | 129 | 0.862 |
| 13 | 13 | 0.113 |
| 130 | 130 | 0.0456 |
| 131 | 131 | 0.374 |
| 132 | 132 | 0.85 |
| 133 | 133 | 0.229 |
| 134 | 134 | 0.123 |
| 135 | 135 | 0.166 |
| 136 | 136 | 0.387 |
| 137 | 137 | 0.932 |
| 138 | 138 | 0.216 |
| 139 | 139 | 0.94 |
| 14 | 14 | 0.369 |
| 140 | 140 | 0.0801 |
| 141 | 141 | 0.00707 |
| 142 | 142 | 0.833 |
| 143 | 143 | 0.0612 |
| 144 | 144 | 0.627 |
| 145 | 145 | 0.214 |
| 146 | 146 | 0.397 |
| 147 | 147 | 0.29 |
| 148 | 148 | 0.219 |
| 149 | 149 | 0.545 |
| 15 | 15 | 0.866 |
| 150 | 150 | 0.304 |
| 151 | 151 | 0.991 |
| 152 | 152 | 0.00507 |
| 153 | 153 | 0.503 |
| 154 | 154 | 0.547 |
| 155 | 155 | 0.0587 |
| 156 | 156 | 0.761 |
| 157 | 157 | 0.555 |
| 158 | 158 | 0.0566 |
| 159 | 159 | 0.41 |
| 16 | 16 | 0.985 |
| 160 | 160 | 0.83 |
| 161 | 161 | 0.163 |
| 162 | 162 | 0.315 |
| 163 | 163 | 0.568 |
| 164 | 164 | 0.987 |
| 165 | 165 | 0.878 |
| 166 | 166 | 0.238 |
| 167 | 167 | 0.296 |
| 168 | 168 | 0.888 |
| 169 | 169 | 0.316 |
| 17 | 17 | 0.673 |
| 18 | 18 | 0.43 |
| 19 | 19 | 0.906 |
| 2 | 2 | 0.403 |
| 20 | 20 | 0.355 |
| 21 | 21 | 0.511 |
| 22 | 22 | 0.325 |
| 23 | 23 | 0.242 |
| 24 | 24 | 0.103 |
| 25 | 25 | 0.0746 |
| 26 | 26 | 0.219 |
| 27 | 27 | 0.793 |
| 28 | 28 | 0.179 |
| 29 | 29 | 0.425 |
| 3 | 3 | 0.765 |
| 30 | 30 | 0.171 |
| 31 | 31 | 0.91 |
| 32 | 32 | 0.304 |
| 33 | 33 | 0.663 |
| 34 | 34 | 0.409 |
| 35 | 35 | 0.534 |
| 36 | 36 | 0.196 |
| 37 | 37 | 0.922 |
| 38 | 38 | 0.982 |
| 39 | 39 | 0.252 |
| 4 | 4 | 0.983 |
| 40 | 40 | 0.745 |
| 41 | 41 | 0.517 |
| 42 | 42 | 0.973 |
| 43 | 43 | 0.729 |
| 44 | 44 | 0.302 |
| 45 | 45 | 0.589 |
| 46 | 46 | 0.975 |
| 47 | 47 | 0.525 |
| 48 | 48 | 0.934 |
| 49 | 49 | 0.195 |
| 5 | 5 | 0.732 |
| 50 | 50 | 0.178 |
| 51 | 51 | 0.951 |
| 52 | 52 | 0.971 |
| 53 | 53 | 0.124 |
| 54 | 54 | 0.981 |
| 55 | 55 | 0.244 |
| 56 | 56 | 0.796 |
| 57 | 57 | 0.656 |
| 58 | 58 | 0.108 |
| 59 | 59 | 0.35 |
| 6 | 6 | 0.24 |
| 60 | 60 | 0.5 |
| 61 | 61 | 0.364 |
| 62 | 62 | 0.0747 |
| 63 | 63 | 0.44 |
| 64 | 64 | 0.658 |
| 65 | 65 | 0.635 |
| 66 | 66 | 0.366 |
| 67 | 67 | 0.865 |
| 68 | 68 | 0.295 |
| 69 | 69 | 0.397 |
| 7 | 7 | 0.336 |
| 70 | 70 | 0.983 |
| 71 | 71 | 0.913 |
| 72 | 72 | 0.579 |
| 73 | 73 | 0.00492 |
| 74 | 74 | 0.968 |
| 75 | 75 | 0.82 |
| 76 | 76 | 0.926 |
| 77 | 77 | 0.0879 |
| 78 | 78 | 0.121 |
| 79 | 79 | 0.765 |
| 8 | 8 | 0.598 |
| 80 | 80 | 0.929 |
| 81 | 81 | 0.789 |
| 82 | 82 | 0.146 |
| 83 | 83 | 0.717 |
| 84 | 84 | 0.776 |
| 85 | 85 | 0.889 |
| 86 | 86 | 0.694 |
| 87 | 87 | 0.0243 |
| 88 | 88 | 0.176 |
| 89 | 89 | 0.569 |
| 9 | 9 | 0.385 |
| 90 | 90 | 0.746 |
| 91 | 91 | 0.805 |
| 92 | 92 | 0.901 |
| 93 | 93 | 0.793 |
| 94 | 94 | 0.915 |
| 95 | 95 | 0.53 |
| 96 | 96 | 0.556 |
| 97 | 97 | 0.269 |
| 98 | 98 | 0.337 |
| 99 | 99 | 0.00496 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10838
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
