FF:11229-116C5: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005343 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005343 | ||
|HumanCAGEScanFiles=NCig10041;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008129;DRR009001;DRZ000426;DRZ001811;DRZ011776;DRZ013161 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037147;DRR041513;DRZ007155 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000763,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0000766,CL:0002078,CL:0000219,CL:0000215,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000034,CL:0000576,CL:0000115,CL:0000566,CL:0002619 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000248 | |||
|comment=Previously: Endothelial Progenitor Cells, donor1 | |comment=Previously: Endothelial Progenitor Cells, donor1 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.57!368.79!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.44!272.73!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.37!235.78!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.14!137.04!TFEC;;chr20:39317868..39317884,-!p1@MAFB!1.97!1036.06!MAFB;;chr16:79634624..79634642,-!p1@MAF!1.96!334.53!MAF;;chr12:54778471..54778528,-!p1@ZNF385A!1.88!75.24!ZNF385A;;chr10:51572408..51572454,+!p3@NCOA4!1.81!352.67!NCOA4;;chr10:31288398..31288455,-!p2@ZNF438!1.70!56.87!ZNF438;;chr4:26165074..26165110,+!p9@RBPJ!1.64!42.54!RBPJ;;chr11:47400062..47400077,-!p2@SPI1!1.62!40.53!SPI1;;chr2:145277882..145277967,-!p3@ZEB2!1.61!66.73!ZEB2;;chr16:79634595..79634620,-!p2@MAF!1.55!61.80!MAF;;chr2:122042770..122042785,-!p1@TFCP2L1!1.55!34.48!TFCP2L1;;chr7:137620650..137620677,-!p3@CREB3L2!1.51!31.57!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.50!392.52!ZEB2;;chr14:75988771..75988826,+!p1@BATF!1.49!39.86!BATF;;chr16:67198683..67198698,+!p2@HSF4!1.49!30.00!HSF4;;chr7:128577972..128578047,+!p1@IRF5!1.48!45.23!IRF5;;chr7:137620684..137620711,-!p4@CREB3L2!1.46!27.54!CREB3L2;;chr16:79633894..79633954,-!p3@MAF!1.42!47.69!MAF;;chr2:113999360..113999386,-!p4@PAX8!1.42!25.53!PAX8;;chr11:47279504..47279563,+!p1@NR1H3!1.41!54.41!NR1H3;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.84!KDM5D;;chr12:26277956..26277980,-!p1@BHLHE41!1.34!73.22!BHLHE41;;chr7:50343634..50343717,+!p2@IKZF1!1.33!20.60!IKZF1;;chr1:78050720..78050734,-!p9@ZZZ3!1.33!20.38!ZZZ3;;chr7:50344289..50344323,+!p1@IKZF1!1.32!19.70!IKZF1;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.71!CEBPA;;chr10:51572339..51572376,+!p4@NCOA4!1.31!42.99!NCOA4;;chr16:79634581..79634592,-!p4@MAF!1.29!18.58!MAF;;chr12:12764995..12765017,+!p3@CREBL2!1.22!21.72!CREBL2;;chr11:47399996..47400014,-!p4@SPI1!1.17!13.66!SPI1;;chr19:13213662..13213686,-!p1@LYL1!1.14!18.81!LYL1;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.76!SPI1;;chr3:69788576..69788648,+!p1@MITF!1.11!63.59!MITF;;chr2:145275982..145276003,-!p7@ZEB2!1.11!11.87!ZEB2;;chr19:13213954..13214021,-!p4@LYL1!1.11!11.87!LYL1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.12!BHLHE41;;chr11:128563948..128564003,+!p1@FLI1!1.08!134.57!FLI1;;chr16:79634464..79634493,-!p5@MAF!1.08!10.97!MAF;;chr6:144385698..144385742,-!p2@PLAGL1!1.04!12.32!PLAGL1;;chr16:67198633..67198671,+!p1@HSF4!1.04!10.08!HSF4;;chr10:31288370..31288393,-!p3@ZNF438!1.04!9.85!ZNF438;;chr17:40440481..40440550,+!p1@STAT5A!1.03!70.09!STAT5A;;chr3:114343039..114343085,-!p8@ZBTB20!1.03!9.63!ZBTB20;;chr5:88178983..88179012,-!p1@MEF2C!1.02!73.89!MEF2C;;chr13:41593425..41593480,-!p1@ELF1!1.02!61.80!ELF1;;chr7:115670792..115670797,-!p2@TFEC!1.00!8.96!TFEC;;chr19:13213704..13213726,-!p3@LYL1!0.99!11.64!LYL1;;chr3:71179699..71179744,-!p2@FOXP1!0.97!64.04!FOXP1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.28!PLEK;;chr20:3321190..3321215,-!p7@C20orf194!0.97!8.28!C20orf194;;chr12:26277817..26277863,-!p2@BHLHE41!0.96!11.20!BHLHE41;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.84!SPI1;;chr16:79633664..79633681,-!p9@MAF!0.95!7.84!MAF;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.84!ZFY;;chr9:88969303..88969335,-!p1@ZCCHC6!0.93!73.67!ZCCHC6;;chr2:178128149..178128198,-!p2@NFE2L2!0.93!41.42!NFE2L2;;chr12:12764947..12764986,+!p2@CREBL2!0.91!14.33!CREBL2;;chr2:113999397..113999413,-!p17@PAX8!0.91!7.17!PAX8;;chr4:26165146..26165163,+!p19@RBPJ!0.90!6.94!RBPJ;;chr6:391743..391759,+!p1@IRF4!0.90!6.94!IRF4;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.21!RUNX3;;chr16:3313791..3313834,+!p2@ZNF263!0.88!15.00!ZNF263;;chr4:185395633..185395651,-!p2@IRF2!0.88!10.97!IRF2;;chr11:47400032..47400043,-!p5@SPI1!0.87!6.49!SPI1;;chr1:167298300..167298319,+!p2@POU2F1!0.87!6.49!POU2F1;;chr2:145275947..145275981,-!p10@ZEB2!0.86!6.27!ZEB2;;chr2:231090433..231090469,+!p1@SP140!0.85!6.05!SP140;;chr8:48650715..48650735,-!p1@CEBPD!0.84!806.99!CEBPD;;chr1:158979686..158979745,+!p1@IFI16!0.84!206.45!IFI16;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.63!MEF2C;;chr11:113930291..113930339,+!p2@ZBTB16!0.83!9.63!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!0.83!9.18!ZNF385A;;chrX:106960285..106960299,-!p1@TSC22D3!0.82!162.56!TSC22D3;;chr19:926001..926046,+!p1@ARID3A!0.81!20.15!ARID3A;;chr9:88969287..88969297,-!p3@ZCCHC6!0.81!7.61!ZCCHC6;;chr8:116681194..116681214,-!p1@TRPS1!0.80!53.29!TRPS1;;chr4:106068026..106068084,+!p1@TET2!0.80!51.95!TET2;;chr12:101869096..101869118,+!p1@SPIC!0.80!5.37!SPIC;;chr16:79633682..79633694,-!p12@MAF!0.80!5.37!MAF;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.08!ZNF467;;chr4:87857433..87857472,+!p9@AFF1!0.79!9.63!AFF1;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.05!SNAI3;;chr2:145277792..145277808,-!p15@ZEB2!0.79!5.15!ZEB2;;chrY:21906761..21906810,-!p2@KDM5D!0.79!5.15!KDM5D;;chr14:68283291..68283323,-!p1@ZFYVE26!0.78!90.46!ZFYVE26;;chr2:61108695..61108753,+!p1@REL!0.78!37.62!REL;;chrX:131623044..131623089,-!p1@MBNL3!0.78!22.84!MBNL3;;chr20:3388238..3388323,-!p1@C20orf194!0.77!38.07!C20orf194;;chr3:48282587..48282603,+!p1@ZNF589!0.77!23.74!ZNF589;;chr18:52989031..52989079,-!p2@TCF4!0.7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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.57!368.79!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.44!272.73!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.37!235.78!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.14!137.04!TFEC;;chr20:39317868..39317884,-!p1@MAFB!1.97!1036.06!MAFB;;chr16:79634624..79634642,-!p1@MAF!1.96!334.53!MAF;;chr12:54778471..54778528,-!p1@ZNF385A!1.88!75.24!ZNF385A;;chr10:51572408..51572454,+!p3@NCOA4!1.81!352.67!NCOA4;;chr10:31288398..31288455,-!p2@ZNF438!1.70!56.87!ZNF438;;chr4:26165074..26165110,+!p9@RBPJ!1.64!42.54!RBPJ;;chr11:47400062..47400077,-!p2@SPI1!1.62!40.53!SPI1;;chr2:145277882..145277967,-!p3@ZEB2!1.61!66.73!ZEB2;;chr16:79634595..79634620,-!p2@MAF!1.55!61.80!MAF;;chr2:122042770..122042785,-!p1@TFCP2L1!1.55!34.48!TFCP2L1;;chr7:137620650..137620677,-!p3@CREB3L2!1.51!31.57!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.50!392.52!ZEB2;;chr14:75988771..75988826,+!p1@BATF!1.49!39.86!BATF;;chr16:67198683..67198698,+!p2@HSF4!1.49!30.00!HSF4;;chr7:128577972..128578047,+!p1@IRF5!1.48!45.23!IRF5;;chr7:137620684..137620711,-!p4@CREB3L2!1.46!27.54!CREB3L2;;chr16:79633894..79633954,-!p3@MAF!1.42!47.69!MAF;;chr2:113999360..113999386,-!p4@PAX8!1.42!25.53!PAX8;;chr11:47279504..47279563,+!p1@NR1H3!1.41!54.41!NR1H3;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.84!KDM5D;;chr12:26277956..26277980,-!p1@BHLHE41!1.34!73.22!BHLHE41;;chr7:50343634..50343717,+!p2@IKZF1!1.33!20.60!IKZF1;;chr1:78050720..78050734,-!p9@ZZZ3!1.33!20.38!ZZZ3;;chr7:50344289..50344323,+!p1@IKZF1!1.32!19.70!IKZF1;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.71!CEBPA;;chr10:51572339..51572376,+!p4@NCOA4!1.31!42.99!NCOA4;;chr16:79634581..79634592,-!p4@MAF!1.29!18.58!MAF;;chr12:12764995..12765017,+!p3@CREBL2!1.22!21.72!CREBL2;;chr11:47399996..47400014,-!p4@SPI1!1.17!13.66!SPI1;;chr19:13213662..13213686,-!p1@LYL1!1.14!18.81!LYL1;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.76!SPI1;;chr3:69788576..69788648,+!p1@MITF!1.11!63.59!MITF;;chr2:145275982..145276003,-!p7@ZEB2!1.11!11.87!ZEB2;;chr19:13213954..13214021,-!p4@LYL1!1.11!11.87!LYL1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.12!BHLHE41;;chr11:128563948..128564003,+!p1@FLI1!1.08!134.57!FLI1;;chr16:79634464..79634493,-!p5@MAF!1.08!10.97!MAF;;chr6:144385698..144385742,-!p2@PLAGL1!1.04!12.32!PLAGL1;;chr16:67198633..67198671,+!p1@HSF4!1.04!10.08!HSF4;;chr10:31288370..31288393,-!p3@ZNF438!1.04!9.85!ZNF438;;chr17:40440481..40440550,+!p1@STAT5A!1.03!70.09!STAT5A;;chr3:114343039..114343085,-!p8@ZBTB20!1.03!9.63!ZBTB20;;chr5:88178983..88179012,-!p1@MEF2C!1.02!73.89!MEF2C;;chr13:41593425..41593480,-!p1@ELF1!1.02!61.80!ELF1;;chr7:115670792..115670797,-!p2@TFEC!1.00!8.96!TFEC;;chr19:13213704..13213726,-!p3@LYL1!0.99!11.64!LYL1;;chr3:71179699..71179744,-!p2@FOXP1!0.97!64.04!FOXP1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.28!PLEK;;chr20:3321190..3321215,-!p7@C20orf194!0.97!8.28!C20orf194;;chr12:26277817..26277863,-!p2@BHLHE41!0.96!11.20!BHLHE41;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.84!SPI1;;chr16:79633664..79633681,-!p9@MAF!0.95!7.84!MAF;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.84!ZFY;;chr9:88969303..88969335,-!p1@ZCCHC6!0.93!73.67!ZCCHC6;;chr2:178128149..178128198,-!p2@NFE2L2!0.93!41.42!NFE2L2;;chr12:12764947..12764986,+!p2@CREBL2!0.91!14.33!CREBL2;;chr2:113999397..113999413,-!p17@PAX8!0.91!7.17!PAX8;;chr4:26165146..26165163,+!p19@RBPJ!0.90!6.94!RBPJ;;chr6:391743..391759,+!p1@IRF4!0.90!6.94!IRF4;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.21!RUNX3;;chr16:3313791..3313834,+!p2@ZNF263!0.88!15.00!ZNF263;;chr4:185395633..185395651,-!p2@IRF2!0.88!10.97!IRF2;;chr11:47400032..47400043,-!p5@SPI1!0.87!6.49!SPI1;;chr1:167298300..167298319,+!p2@POU2F1!0.87!6.49!POU2F1;;chr2:145275947..145275981,-!p10@ZEB2!0.86!6.27!ZEB2;;chr2:231090433..231090469,+!p1@SP140!0.85!6.05!SP140;;chr8:48650715..48650735,-!p1@CEBPD!0.84!806.99!CEBPD;;chr1:158979686..158979745,+!p1@IFI16!0.84!206.45!IFI16;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.63!MEF2C;;chr11:113930291..113930339,+!p2@ZBTB16!0.83!9.63!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!0.83!9.18!ZNF385A;;chrX:106960285..106960299,-!p1@TSC22D3!0.82!162.56!TSC22D3;;chr19:926001..926046,+!p1@ARID3A!0.81!20.15!ARID3A;;chr9:88969287..88969297,-!p3@ZCCHC6!0.81!7.61!ZCCHC6;;chr8:116681194..116681214,-!p1@TRPS1!0.80!53.29!TRPS1;;chr4:106068026..106068084,+!p1@TET2!0.80!51.95!TET2;;chr12:101869096..101869118,+!p1@SPIC!0.80!5.37!SPIC;;chr16:79633682..79633694,-!p12@MAF!0.80!5.37!MAF;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.08!ZNF467;;chr4:87857433..87857472,+!p9@AFF1!0.79!9.63!AFF1;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.05!SNAI3;;chr2:145277792..145277808,-!p15@ZEB2!0.79!5.15!ZEB2;;chrY:21906761..21906810,-!p2@KDM5D!0.79!5.15!KDM5D;;chr14:68283291..68283323,-!p1@ZFYVE26!0.78!90.46!ZFYVE26;;chr2:61108695..61108753,+!p1@REL!0.78!37.62!REL;;chrX:131623044..131623089,-!p1@MBNL3!0.78!22.84!MBNL3;;chr20:3388238..3388323,-!p1@C20orf194!0.77!38.07!C20orf194;;chr3:48282587..48282603,+!p1@ZNF589!0.77!23.74!ZNF589;;chr18:52989031..52989079,-!p2@TCF4!0.76!12.09!TCF4;;chr19:49140609..49140643,-!p1@DBP!0.75!29.11!DBP;;chr10:94449703..94449718,+!p1@HHEX!0.75!19.48!HHEX;;chr8:116680215..116680245,-!p6@TRPS1!0.75!7.61!TRPS1;;chrX:107019163..107019179,-!p7@TSC22D3!0.75!5.37!TSC22D3;;chr16:31885093..31885165,+!p1@ZNF267!0.74!75.91!ZNF267;;chr2:178128199..178128245,-!p3@NFE2L2!0.74!26.42!NFE2L2;;chr2:145277589..145277612,-!p12@ZEB2!0.74!4.48!ZEB2;;chr1:25256439..25256476,-!p3@RUNX3!0.74!4.48!RUNX3;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.55!IFI16;;chr9:117150254..117150271,-!p1@AKNA!0.73!12.99!AKNA;;chr2:145282041..145282092,-!p8@ZEB2!0.73!6.94!ZEB2;;chr1:8484007..8484061,-!p13@RERE!0.73!5.82!RERE;;chr19:35759824..35759891,+!p1@USF2!0.72!148.46!USF2;;chr2:145277833..145277845,-!p16@ZEB2!0.72!4.25!ZEB2;;chr7:149470297..149470337,-!p3@ZNF467!0.72!4.25!ZNF467;;chr7:50344251..50344288,+!p3@IKZF1!0.72!4.25!IKZF1;;chrX:107018836..107018862,-!p8@TSC22D3!0.72!4.25!TSC22D3;;chr2:70142232..70142251,+!p1@MXD1!0.70!25.30!MXD1;;chr2:97202480..97202499,+!p1@ARID5A!0.69!45.23!ARID5A;;chr5:142782823..142782854,-!p3@NR3C1!0.69!5.82!NR3C1;;chr4:185395590..185395627,-!p3@IRF2!0.69!4.93!IRF2;;chr3:27763807..27763822,-!p1@EOMES!0.68!3.81!EOMES;;chr9:137217986..137218049,+!p3@RXRA!0.67!11.64!RXRA;;chr19:42636586..42636607,-!p1@POU2F2!0.66!11.20!POU2F2;;chrX:129244430..129244442,-!p5@ELF4!0.66!3.58!ELF4;;chr6:152011654..152011682,+!p1@ESR1!0.66!3.58!ESR1;;chr2:48541789..48541874,+!p1@FOXN2!0.65!92.70!FOXN2;;chr2:178129358..178129403,-!p5@NFE2L2!0.65!16.12!NFE2L2;;chr2:192015750..192015793,-!p2@STAT4!0.65!4.93!STAT4;;chr19:50432132..50432217,+!p2@ATF5!0.65!4.25!ATF5;;chr10:94449675..94449694,+!p2@HHEX!0.64!10.08!HHEX;;chr8:116681150..116681164,-!p5@TRPS1!0.64!7.17!TRPS1;;chr19:16435735..16435773,+!p4@KLF2!0.64!3.36!KLF2;;chr12:12764773..12764852,+!p1@CREBL2!0.63!99.19!CREBL2;;chrX:101186981..101187030,-!p1@ZMAT1!0.63!12.09!ZMAT1;;chr5:88179230..88179270,-!p4@MEF2C!0.63!6.94!MEF2C;;chr5:88179195..88179224,-!p3@MEF2C!0.63!5.60!MEF2C;;chr1:158985493..158985535,+!p4@IFI16!0.63!5.37!IFI16;;chr17:4981745..4981810,+!p1@ZFP3!0.62!18.14!ZFP3;;chr1:158979851..158979865,+!p5@IFI16!0.62!7.84!IFI16;;chr1:221053049..221053075,+!p3@HLX!0.62!6.05!HLX;;chr2:145277575..145277580,-!p22@ZEB2!0.62!3.13!ZEB2;;chr19:13213399..13213414,-!p6@LYL1!0.62!3.13!LYL1;;chr11:2292226..2292270,-!p1@ASCL2!0.62!3.13!ASCL2;;chr7:150974206..150974255,-!p1@SMARCD3!0.61!22.84!SMARCD3;;chr6:41703296..41703367,-!p1@TFEB!0.61!18.14!TFEB;;chr18:74207147..74207183,-!p1@ZNF516!0.61!10.52!ZNF516;;chr10:21823218..21823240,+!p3@MLLT10!0.61!6.05!MLLT10;;chr2:192015701..192015743,-!p1@STAT4!0.61!4.48!STAT4;;chr7:139762641..139762768,-!p1@PARP12!0.60!49.26!PARP12;;chr9:88969339..88969422,-!p2@ZCCHC6!0.60!28.21!ZCCHC6;;chr21:30671211..30671234,+!p3@BACH1!0.60!17.02!BACH1;;chr18:45456800..45456886,-!p4@SMAD2!0.60!13.21!SMAD2;;chr21:30671235..30671253,+!p1@BACH1!0.59!45.01!BACH1;;chr11:64764435..64764449,-!p1@BATF2!0.59!4.25!BATF2;;chr1:167298233..167298248,+!p6@POU2F1!0.59!2.91!POU2F1;;chr19:35759976..35760042,+!p4@USF2!0.58!17.69!USF2;;chr2:61108650..61108687,+!p2@REL!0.58!16.35!REL;;chr19:56111680..56111716,+!p1@ZNF524!0.58!12.54!ZNF524;;chr4:185395672..185395710,-!p1@IRF2!0.57!90.91!IRF2;;chr7:149470540..149470596,-!p2@ZNF467!0.57!3.81!ZNF467;;chr8:53373491..53373506,-!p4@ST18!0.57!2.69!ST18;;chr19:45251395..45251432,+!p8@BCL3!0.57!2.69!BCL3;;chr14:75988831..75988847,+!p2@BATF!0.57!2.69!BATF;;chr16:79633883..79633892,-!p6@MAF!0.57!2.69!MAF;;chr18:6414849..6414876,-!p2@L3MBTL4!0.57!2.69!L3MBTL4;;chr12:56753869..56753930,-!p1@STAT2!0.56!145.55!STAT2;;chr3:71179746..71179783,-!p7@FOXP1!0.56!10.52!FOXP1;;chr8:116681221..116681236,-!p3@TRPS1!0.56!9.18!TRPS1;;chr1:249132556..249132573,+!p3@ZNF672!0.56!9.18!ZNF672;;chr20:48807615..48807644,+!p6@CEBPB!0.56!4.93!CEBPB;;chr17:79881332..79881348,-!p3@MAFG!0.56!4.25!MAFG;;chr15:100106155..100106243,+!p1@MEF2A!0.55!85.54!MEF2A;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.55!20.82!ZNF580;;chr3:48282536..48282586,+!p2@ZNF589!0.55!8.28!ZNF589;;chr9:137218362..137218385,+!p4@RXRA!0.55!8.06!RXRA;;chr20:50159198..50159299,-!p1@NFATC2!0.55!4.03!NFATC2;;chr1:221052733..221052749,+!p2@HLX!0.55!3.58!HLX;;chr9:73029018..73029042,-!p6@KLF9!0.55!3.58!KLF9;;chr18:6414884..6414942,-!p1@L3MBTL4!0.55!3.36!L3MBTL4;;chr18:53255839..53255854,-!p13@TCF4!0.55!3.13!TCF4;;chr6:20403916..20403965,+!p3@E2F3!0.54!13.66!E2F3;;chr21:30671189..30671207,+!p4@BACH1!0.54!10.52!BACH1;;chr19:54041382..54041437,+!p3@ZNF331!0.54!8.51!ZNF331;;chr7:99156393..99156433,+!p6@ZNF655!0.54!6.49!ZNF655;;chr19:926055..926068,+!p2@ARID3A!0.54!6.27!ARID3A;;chr1:61547781..61547809,+!p5@NFIA!0.54!5.82!NFIA;;chr8:71316428..71316459,-!p2@NCOA2!0.54!4.70!NCOA2;;chr9:88969226..88969237,-!p4@ZCCHC6!0.54!4.03!ZCCHC6;;chr20:48808740..48808743,+!p25@CEBPB!0.54!2.46!CEBPB;;chr21:30672433..30672464,+!p6@BACH1!0.54!2.46!BACH1;;chr15:31684663..31684717,+!p10@KLF13!0.54!2.46!KLF13;;chr16:88752861..88752884,-!p2@SNAI3!0.54!2.46!SNAI3;;chr17:45810594..458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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002619;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11229-116C5 | |id=FF:11229-116C5 | ||
|is_a=CL:0000576;;EFO:0002091;;FF: | |is_a=CL:0000576;;EFO:0002091;;FF:0000248 | ||
|is_obsolete= | |||
|library_id=CNhs10858 | |||
|library_id_phase_based=2:CNhs10858 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11229 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.TGACCA.11229 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11229 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.TGACCA.11229 | |||
|name=CD14+ monocyte derived endothelial progenitor cells, donor1 | |name=CD14+ monocyte derived endothelial progenitor cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10041,,, | |profile_cagescan=NCig10041,,, | ||
|profile_hcage=CNhs10858,LSID702,release008,COMPLETED | |profile_hcage=CNhs10858,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.296138420378802,0,0,0.0877514257027229,0,0.1174428507118,0,-0.0265996961350983,-0.194652134874219,0,0.0877514257027229,0,0,0,0,0,0,0,0.616456255296,0.160717855764157,0,0,0.124437870449759,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0698895136451178,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.00264871180002779,0,-0.00924093553988223,0,0,0.0633742285510604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0745243187034627,0.0877514257027229,0,0,0.0438757128513615,0,0,-0.526736733488647,0.163124637149869,0,0,0.0110056861535032,-0.211197402695869,0,0,0.0803589278820785,0,-0.0980353512377064,-0.094601487949534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0395263260948564,0.104225288260389,0,0,-0.012491855745106,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=3H100-81-10 | |rna_catalog_number=3H100-81-10 | ||
| Line 56: | Line 83: | ||
|rna_tube_id=116C5 | |rna_tube_id=116C5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.TGACCA | |||
|sample_age=65 | |sample_age=65 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 106: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=SREBF1,2:3.62664998202;TLX2:2.63845115602;IKZF2:1.80822443956;IRF7:1.49493765927;SPIB:1.34146275389;RXRA_VDR{dimer}:1.33999112211;DMAP1_NCOR{1,2}_SMARC:1.33995057468;STAT1,3:1.3225228957;IRF1,2:1.26467608326;FOXD3:1.23352413094;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19190909907;EN1,2:1.13880905642;SPI1:1.10479248321;MAFB:1.07544798599;ELF1,2,4:1.04828508254;NFE2L2:0.98627985725;T:0.954614460077;ETS1,2:0.915694239069;AR:0.900631924617;TGIF1:0.823899207143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.780592669127;ARID5B:0.744185791485;EBF1:0.741591944816;RORA:0.735456703369;FOXO1,3,4:0.72334602232;FOX{D1,D2}:0.719425530177;NKX2-2,8:0.695935132305;HNF4A_NR2F1,2:0.677442067794;NFIL3:0.65055956291;FOXP1:0.640719297282;ESR1:0.594253620522;CUX2:0.563438281705;NFIX:0.552466081264;NANOG{mouse}:0.524123636974;HBP1_HMGB_SSRP1_UBTF:0.507957191269;FOX{F1,F2,J1}:0.476185700371;TFCP2:0.475485077926;CDX1,2,4:0.465066273607;FOXA2:0.450099984349;ESRRA:0.408635100174;RUNX1..3:0.394953609026;STAT2,4,6:0.386397601208;PAX2:0.368271781635;PAX1,9:0.36102969369;CEBPA,B_DDIT3:0.354867951841;POU5F1:0.348139871812;NR6A1:0.332360069992;NKX3-2:0.332102625353;FOXN1:0.323748684072;RXR{A,B,G}:0.276049624534;OCT4_SOX2{dimer}:0.261464308324;SMAD1..7,9:0.236878670386;PRDM1:0.216963154143;ZBTB16:0.208605187624;AIRE:0.181075360772;DBP:0.136708091794;MYOD1:0.128180790585;MYFfamily:0.124601636686;TFAP4:0.121633561369;NHLH1,2:0.109560229302;EP300:0.104514127318;PRRX1,2:0.0959212080138;HAND1,2:0.0782747624863;NKX2-3_NKX2-5:0.0751886509066;GATA4:0.047010699774;TAL1_TCF{3,4,12}:0.0461538238837;BPTF:0.0456724769268;ELK1,4_GABP{A,B1}:0.0445900664717;YY1:0.0349885841784;SPZ1:0.0314482675596;ZNF143:0.0244866197944;GATA6:0.0146651979958;HMX1:0.0114361467324;NKX6-1,2:-0.00943115084842;PAX8:-0.0242999143548;MYB:-0.0421497584356;PDX1:-0.0551889265185;NFE2:-0.0825412049339;HMGA1,2:-0.0880210946231;MTF1:-0.0898056654225;FOXP3:-0.105452195755;LHX3,4:-0.106353617434;NFKB1_REL_RELA:-0.119270492265;RFX2..5_RFXANK_RFXAP:-0.133667561665;NRF1:-0.143632686246;PAX4:-0.158692877472;HLF:-0.160102055767;PITX1..3:-0.166865431245;PAX6:-0.17969862985;ALX1:-0.181198100735;VSX1,2:-0.192441129494;RBPJ:-0.286033081924;NR5A1,2:-0.293625011541;SP1:-0.299117058893;HOX{A4,D4}:-0.335194071508;NANOG:-0.335549848989;FOX{I1,J2}:-0.339668755671;KLF4:-0.340215680182;ZNF238:-0.355227364702;LMO2:-0.369327824926;FOSL2:-0.374159515429;BREu{core}:-0.379766326457;HSF1,2:-0.397711176791;HNF1A:-0.399676059175;ZFP161:-0.399702074721;HES1:-0.409512922689;TFAP2{A,C}:-0.422614699924;TOPORS:-0.434006029315;PPARG:-0.434848068977;GLI1..3:-0.443694718058;STAT5{A,B}:-0.477780903831;ADNP_IRX_SIX_ZHX:-0.48603761271;ATF5_CREB3:-0.499289592368;CRX:-0.5033163815;ZNF148:-0.513791104168;REST:-0.520686252344;SOX{8,9,10}:-0.525741372738;FOS_FOS{B,L1}_JUN{B,D}:-0.534052438825;ATF4:-0.535140223396;MZF1:-0.54386756363;MAZ:-0.548841619412;XBP1:-0.55020210265;EVI1:-0.552657639023;bHLH_family:-0.553699235671;MED-1{core}:-0.568105494392;ZEB1:-0.572179653138;AHR_ARNT_ARNT2:-0.572768907718;FOXQ1:-0.580631460718;SOX2:-0.590071883661;SOX5:-0.593973347521;XCPE1{core}:-0.607108258635;POU1F1:-0.60884828883;ATF2:-0.631096304855;IKZF1:-0.66114160299;PAX3,7:-0.6745665663;BACH2:-0.677697634419;GTF2I:-0.678142784305;GZF1:-0.69850802456;EGR1..3:-0.699341525068;ZBTB6:-0.713369144182;PATZ1:-0.71852277169;TLX1..3_NFIC{dimer}:-0.730174716867;NFATC1..3:-0.739490387735;SNAI1..3:-0.769861326686;HOX{A5,B5}:-0.769862549025;GTF2A1,2:-0.77808770364;CREB1:-0.785146873958;E2F1..5:-0.799058647919;ALX4:-0.824012165404;FOXM1:-0.833357751852;GFI1:-0.839368525144;NR3C1:-0.840155681451;MTE{core}:-0.847176250316;PAX5:-0.847538584384;MYBL2:-0.84955631843;GCM1,2:-0.869589529182;MEF2{A,B,C,D}:-0.871197674039;HOX{A6,A7,B6,B7}:-0.874283933659;POU2F1..3:-0.876103830998;ZNF423:-0.887305944959;HIF1A:-0.888352738991;UFEwm:-0.932997569931;GFI1B:-0.934509781892;NFY{A,B,C}:-0.950121181355;SOX17:-0.953353413151;POU3F1..4:-0.969207363401;RREB1:-0.969597413393;NKX3-1:-0.976617060971;NFE2L1:-1.00487076187;TFAP2B:-1.01349573428;CDC5L:-1.06857996018;HIC1:-1.06955128421;TEF:-1.07733959084;TP53:-1.1090317085;HOXA9_MEIS1:-1.11882178837;NR1H4:-1.12122489168;TEAD1:-1.14900859196;TFDP1:-1.15853500034;TBP:-1.17166106823;LEF1_TCF7_TCF7L1,2:-1.17875124385;ATF6:-1.19830111713;PBX1:-1.25472683281;RFX1:-1.42960906133;ZNF384:-1.45042489487;POU6F1:-1.46354176342;FOXL1:-1.52289049587;SRF:-1.54479629274;ZIC1..3:-1.65297328784;NKX2-1,4:-1.68689145243;JUN:-1.82001671659;TBX4,5:-1.92565556022;ONECUT1,2:-1.97415036441 | |top_motifs=SREBF1,2:3.62664998202;TLX2:2.63845115602;IKZF2:1.80822443956;IRF7:1.49493765927;SPIB:1.34146275389;RXRA_VDR{dimer}:1.33999112211;DMAP1_NCOR{1,2}_SMARC:1.33995057468;STAT1,3:1.3225228957;IRF1,2:1.26467608326;FOXD3:1.23352413094;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19190909907;EN1,2:1.13880905642;SPI1:1.10479248321;MAFB:1.07544798599;ELF1,2,4:1.04828508254;NFE2L2:0.98627985725;T:0.954614460077;ETS1,2:0.915694239069;AR:0.900631924617;TGIF1:0.823899207143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.780592669127;ARID5B:0.744185791485;EBF1:0.741591944816;RORA:0.735456703369;FOXO1,3,4:0.72334602232;FOX{D1,D2}:0.719425530177;NKX2-2,8:0.695935132305;HNF4A_NR2F1,2:0.677442067794;NFIL3:0.65055956291;FOXP1:0.640719297282;ESR1:0.594253620522;CUX2:0.563438281705;NFIX:0.552466081264;NANOG{mouse}:0.524123636974;HBP1_HMGB_SSRP1_UBTF:0.507957191269;FOX{F1,F2,J1}:0.476185700371;TFCP2:0.475485077926;CDX1,2,4:0.465066273607;FOXA2:0.450099984349;ESRRA:0.408635100174;RUNX1..3:0.394953609026;STAT2,4,6:0.386397601208;PAX2:0.368271781635;PAX1,9:0.36102969369;CEBPA,B_DDIT3:0.354867951841;POU5F1:0.348139871812;NR6A1:0.332360069992;NKX3-2:0.332102625353;FOXN1:0.323748684072;RXR{A,B,G}:0.276049624534;OCT4_SOX2{dimer}:0.261464308324;SMAD1..7,9:0.236878670386;PRDM1:0.216963154143;ZBTB16:0.208605187624;AIRE:0.181075360772;DBP:0.136708091794;MYOD1:0.128180790585;MYFfamily:0.124601636686;TFAP4:0.121633561369;NHLH1,2:0.109560229302;EP300:0.104514127318;PRRX1,2:0.0959212080138;HAND1,2:0.0782747624863;NKX2-3_NKX2-5:0.0751886509066;GATA4:0.047010699774;TAL1_TCF{3,4,12}:0.0461538238837;BPTF:0.0456724769268;ELK1,4_GABP{A,B1}:0.0445900664717;YY1:0.0349885841784;SPZ1:0.0314482675596;ZNF143:0.0244866197944;GATA6:0.0146651979958;HMX1:0.0114361467324;NKX6-1,2:-0.00943115084842;PAX8:-0.0242999143548;MYB:-0.0421497584356;PDX1:-0.0551889265185;NFE2:-0.0825412049339;HMGA1,2:-0.0880210946231;MTF1:-0.0898056654225;FOXP3:-0.105452195755;LHX3,4:-0.106353617434;NFKB1_REL_RELA:-0.119270492265;RFX2..5_RFXANK_RFXAP:-0.133667561665;NRF1:-0.143632686246;PAX4:-0.158692877472;HLF:-0.160102055767;PITX1..3:-0.166865431245;PAX6:-0.17969862985;ALX1:-0.181198100735;VSX1,2:-0.192441129494;RBPJ:-0.286033081924;NR5A1,2:-0.293625011541;SP1:-0.299117058893;HOX{A4,D4}:-0.335194071508;NANOG:-0.335549848989;FOX{I1,J2}:-0.339668755671;KLF4:-0.340215680182;ZNF238:-0.355227364702;LMO2:-0.369327824926;FOSL2:-0.374159515429;BREu{core}:-0.379766326457;HSF1,2:-0.397711176791;HNF1A:-0.399676059175;ZFP161:-0.399702074721;HES1:-0.409512922689;TFAP2{A,C}:-0.422614699924;TOPORS:-0.434006029315;PPARG:-0.434848068977;GLI1..3:-0.443694718058;STAT5{A,B}:-0.477780903831;ADNP_IRX_SIX_ZHX:-0.48603761271;ATF5_CREB3:-0.499289592368;CRX:-0.5033163815;ZNF148:-0.513791104168;REST:-0.520686252344;SOX{8,9,10}:-0.525741372738;FOS_FOS{B,L1}_JUN{B,D}:-0.534052438825;ATF4:-0.535140223396;MZF1:-0.54386756363;MAZ:-0.548841619412;XBP1:-0.55020210265;EVI1:-0.552657639023;bHLH_family:-0.553699235671;MED-1{core}:-0.568105494392;ZEB1:-0.572179653138;AHR_ARNT_ARNT2:-0.572768907718;FOXQ1:-0.580631460718;SOX2:-0.590071883661;SOX5:-0.593973347521;XCPE1{core}:-0.607108258635;POU1F1:-0.60884828883;ATF2:-0.631096304855;IKZF1:-0.66114160299;PAX3,7:-0.6745665663;BACH2:-0.677697634419;GTF2I:-0.678142784305;GZF1:-0.69850802456;EGR1..3:-0.699341525068;ZBTB6:-0.713369144182;PATZ1:-0.71852277169;TLX1..3_NFIC{dimer}:-0.730174716867;NFATC1..3:-0.739490387735;SNAI1..3:-0.769861326686;HOX{A5,B5}:-0.769862549025;GTF2A1,2:-0.77808770364;CREB1:-0.785146873958;E2F1..5:-0.799058647919;ALX4:-0.824012165404;FOXM1:-0.833357751852;GFI1:-0.839368525144;NR3C1:-0.840155681451;MTE{core}:-0.847176250316;PAX5:-0.847538584384;MYBL2:-0.84955631843;GCM1,2:-0.869589529182;MEF2{A,B,C,D}:-0.871197674039;HOX{A6,A7,B6,B7}:-0.874283933659;POU2F1..3:-0.876103830998;ZNF423:-0.887305944959;HIF1A:-0.888352738991;UFEwm:-0.932997569931;GFI1B:-0.934509781892;NFY{A,B,C}:-0.950121181355;SOX17:-0.953353413151;POU3F1..4:-0.969207363401;RREB1:-0.969597413393;NKX3-1:-0.976617060971;NFE2L1:-1.00487076187;TFAP2B:-1.01349573428;CDC5L:-1.06857996018;HIC1:-1.06955128421;TEF:-1.07733959084;TP53:-1.1090317085;HOXA9_MEIS1:-1.11882178837;NR1H4:-1.12122489168;TEAD1:-1.14900859196;TFDP1:-1.15853500034;TBP:-1.17166106823;LEF1_TCF7_TCF7L1,2:-1.17875124385;ATF6:-1.19830111713;PBX1:-1.25472683281;RFX1:-1.42960906133;ZNF384:-1.45042489487;POU6F1:-1.46354176342;FOXL1:-1.52289049587;SRF:-1.54479629274;ZIC1..3:-1.65297328784;NKX2-1,4:-1.68689145243;JUN:-1.82001671659;TBX4,5:-1.92565556022;ONECUT1,2:-1.97415036441 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11229-116C5;search_select_hide=table117:FF:11229-116C5 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | CD14+ monocyte derived endothelial progenitor cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10858 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10858
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10858
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.25 |
| 10 | 10 | 0.0266 |
| 100 | 100 | 0.917 |
| 101 | 101 | 0.29 |
| 102 | 102 | 0.976 |
| 103 | 103 | 0.194 |
| 104 | 104 | 0.937 |
| 105 | 105 | 0.477 |
| 106 | 106 | 0.14 |
| 107 | 107 | 0.555 |
| 108 | 108 | 0.943 |
| 109 | 109 | 0.0442 |
| 11 | 11 | 0.0647 |
| 110 | 110 | 0.217 |
| 111 | 111 | 0.0437 |
| 112 | 112 | 0.255 |
| 113 | 113 | 0.996 |
| 114 | 114 | 0.0867 |
| 115 | 115 | 0.224 |
| 116 | 116 | 0.755 |
| 117 | 117 | 0.0129 |
| 118 | 118 | 0.27 |
| 119 | 119 | 0.101 |
| 12 | 12 | 0.399 |
| 120 | 120 | 0.401 |
| 121 | 121 | 0.766 |
| 122 | 122 | 0.557 |
| 123 | 123 | 0.129 |
| 124 | 124 | 0.251 |
| 125 | 125 | 0.293 |
| 126 | 126 | 0.0866 |
| 127 | 127 | 0.136 |
| 128 | 128 | 0.121 |
| 129 | 129 | 0.709 |
| 13 | 13 | 0.0604 |
| 130 | 130 | 0.839 |
| 131 | 131 | 0.449 |
| 132 | 132 | 0.835 |
| 133 | 133 | 0.871 |
| 134 | 134 | 0.926 |
| 135 | 135 | 0.0914 |
| 136 | 136 | 0.891 |
| 137 | 137 | 0.0142 |
| 138 | 138 | 0.0552 |
| 139 | 139 | 0.0231 |
| 14 | 14 | 0.144 |
| 140 | 140 | 0.383 |
| 141 | 141 | 0.684 |
| 142 | 142 | 0.119 |
| 143 | 143 | 0.517 |
| 144 | 144 | 0.326 |
| 145 | 145 | 0.455 |
| 146 | 146 | 0.89 |
| 147 | 147 | 0.432 |
| 148 | 148 | 0.0113 |
| 149 | 149 | 0.614 |
| 15 | 15 | 0.213 |
| 150 | 150 | 0.47 |
| 151 | 151 | 0.814 |
| 152 | 152 | 0.473 |
| 153 | 153 | 0.934 |
| 154 | 154 | 0.92 |
| 155 | 155 | 0.216 |
| 156 | 156 | 0.937 |
| 157 | 157 | 0.8 |
| 158 | 158 | 0.913 |
| 159 | 159 | 0.246 |
| 16 | 16 | 0.289 |
| 160 | 160 | 0.496 |
| 161 | 161 | 0.459 |
| 162 | 162 | 0.731 |
| 163 | 163 | 0.287 |
| 164 | 164 | 0.158 |
| 165 | 165 | 0.0854 |
| 166 | 166 | 0.653 |
| 167 | 167 | 0.76 |
| 168 | 168 | 0.262 |
| 169 | 169 | 0.0121 |
| 17 | 17 | 0.264 |
| 18 | 18 | 0.553 |
| 19 | 19 | 0.207 |
| 2 | 2 | 0.804 |
| 20 | 20 | 0.803 |
| 21 | 21 | 0.265 |
| 22 | 22 | 0.102 |
| 23 | 23 | 0.559 |
| 24 | 24 | 0.0198 |
| 25 | 25 | 0.593 |
| 26 | 26 | 0.0845 |
| 27 | 27 | 0.139 |
| 28 | 28 | 0.495 |
| 29 | 29 | 0.166 |
| 3 | 3 | 0.0103 |
| 30 | 30 | 0.789 |
| 31 | 31 | 0.385 |
| 32 | 32 | 0.707 |
| 33 | 33 | 0.474 |
| 34 | 34 | 0.273 |
| 35 | 35 | 0.286 |
| 36 | 36 | 0.126 |
| 37 | 37 | 0.132 |
| 38 | 38 | 0.12 |
| 39 | 39 | 0.876 |
| 4 | 4 | 0.899 |
| 40 | 40 | 0.17 |
| 41 | 41 | 0.266 |
| 42 | 42 | 0.287 |
| 43 | 43 | 0.0801 |
| 44 | 44 | 0.432 |
| 45 | 45 | 0.567 |
| 46 | 46 | 0.209 |
| 47 | 47 | 0.439 |
| 48 | 48 | 0.268 |
| 49 | 49 | 0.152 |
| 5 | 5 | 0.182 |
| 50 | 50 | 0.637 |
| 51 | 51 | 0.524 |
| 52 | 52 | 0.333 |
| 53 | 53 | 0.228 |
| 54 | 54 | 0.374 |
| 55 | 55 | 0.0146 |
| 56 | 56 | 0.66 |
| 57 | 57 | 0.539 |
| 58 | 58 | 0.119 |
| 59 | 59 | 0.112 |
| 6 | 6 | 0.387 |
| 60 | 60 | 0.0795 |
| 61 | 61 | 0.129 |
| 62 | 62 | 0.184 |
| 63 | 63 | 0.264 |
| 64 | 64 | 0.275 |
| 65 | 65 | 0.105 |
| 66 | 66 | 0.943 |
| 67 | 67 | 0.206 |
| 68 | 68 | 0.484 |
| 69 | 69 | 0.868 |
| 7 | 7 | 0.142 |
| 70 | 70 | 0.0234 |
| 71 | 71 | 0.0533 |
| 72 | 72 | 0.245 |
| 73 | 73 | 0.101 |
| 74 | 74 | 0.631 |
| 75 | 75 | 0.0247 |
| 76 | 76 | 0.17 |
| 77 | 77 | 0.168 |
| 78 | 78 | 0.092 |
| 79 | 79 | 0.565 |
| 8 | 8 | 0.125 |
| 80 | 80 | 0.232 |
| 81 | 81 | 0.226 |
| 82 | 82 | 0.0986 |
| 83 | 83 | 0.517 |
| 84 | 84 | 0.44 |
| 85 | 85 | 0.107 |
| 86 | 86 | 0.0217 |
| 87 | 87 | 0.106 |
| 88 | 88 | 0.234 |
| 89 | 89 | 0.347 |
| 9 | 9 | 0.321 |
| 90 | 90 | 0.0227 |
| 91 | 91 | 0.807 |
| 92 | 92 | 0.124 |
| 93 | 93 | 0.846 |
| 94 | 94 | 0.0842 |
| 95 | 95 | 0.399 |
| 96 | 96 | 0.25 |
| 97 | 97 | 0.797 |
| 98 | 98 | 0.411 |
| 99 | 99 | 0.607 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10858
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000576 monocyte
EFO:0002091 biological replicate
FF:0000248 human endothelial progenitor cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0000766 (myeloid leukocyte)
0002078 (meso-epithelial cell)
0000219 (motile cell)
0000215 (barrier cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000576 (monocyte)
0000115 (endothelial cell)
0000566 (angioblastic mesenchymal cell)
0002619 (adult endothelial progenitor cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000248 (human endothelial progenitor cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
