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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005778
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005778
|accession_numbers=CAGE;DRX008223;DRR009095;DRZ000520;DRZ001905;DRZ011870;DRZ013255
|accession_numbers_RNASeq=sRNA-Seq;DRX037057;DRR041423;DRZ007065
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.31!201.57!ERG;;chr20:62680984..62680999,-!p1@SOX18!2.23!222.76!SOX18;;chr18:53068911..53068935,-!p4@TCF4!2.09!135.67!TCF4;;chr19:46801639..46801699,+!p1@HIF3A!1.85!70.29!HIF3A;;chr5:71803177..71803255,-!p1@ZNF366!1.79!60.99!ZNF366;;chr17:6926362..6926377,+!p1@BCL6B!1.77!58.14!BCL6B;;chr9:124991204..124991246,-!p1@LHX6!1.76!56.59!LHX6;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.42!SOX7;;chr7:115670804..115670825,-!p1@TFEC!1.66!44.96!TFEC;;chr17:46682321..46682362,-!p1@HOXB6!1.55!34.37!HOXB6;;chr12:96588368..96588394,+!p3@ELK3!1.50!80.37!ELK3;;chr17:46688334..46688385,-!p1@HOXB7!1.43!37.47!HOXB7;;chr3:169381420..169381535,-!p1@MECOM!1.42!29.20!MECOM;;chr8:55370487..55370503,+!p1@SOX17!1.35!21.19!SOX17;;chr18:22932080..22932170,-!p1@ZNF521!1.34!87.09!ZNF521;;chr3:114343039..114343085,-!p8@ZBTB20!1.30!19.12!ZBTB20;;chr7:15726296..15726315,-!p1@MEOX2!1.30!18.86!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!1.27!17.57!MEOX2;;chr22:19748231..19748317,+!p1@TBX1!1.26!17.31!TBX1;;chr1:158985493..158985535,+!p4@IFI16!1.24!25.07!IFI16;;chr19:13213511..13213545,-!p2@LYL1!1.21!16.54!LYL1;;chr3:168864315..168864339,-!p2@MECOM!1.17!22.48!MECOM;;chr19:53496768..53496799,-!p1@ZNF702P!1.15!20.16!ZNF702P;;chr2:177053386..177053402,+!p1@HOXD1!1.15!13.18!HOXD1;;chr13:72441315..72441454,-!p1@DACH1!1.14!25.58!DACH1;;chr2:177001290..177001315,+!p1@HOXD3!1.13!12.40!HOXD3;;chr9:16705069..16705086,-!p3@BNC2!1.12!12.15!BNC2;;chr9:14314131..14314147,-!p2@NFIB!1.11!65.90!NFIB;;chr19:46800289..46800327,+!p2@HIF3A!1.08!11.11!HIF3A;;chr6:34204921..34204939,+!p3@HMGA1!1.07!327.41!HMGA1;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.34!TCF4;;chr18:53177984..53178004,-!p17@TCF4!1.05!10.34!TCF4;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.34!KDM5D;;chr11:128563652..128563689,+!p3@FLI1!1.03!9.82!FLI1;;chr10:94449703..94449718,+!p1@HHEX!1.02!37.47!HHEX;;chr4:146402843..146402864,+!p3@SMAD1!1.02!19.12!SMAD1;;chr4:146403912..146403972,+!p5@SMAD1!1.01!11.89!SMAD1;;chr1:200008734..200008765,+!p2@NR5A2!0.98!8.53!NR5A2;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.27!ZFY;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.27!ZNF323;;chr3:178789522..178789564,-!p2@ZMAT3!0.96!61.24!ZMAT3;;chr18:53257001..53257015,-!p5@TCF4!0.96!14.21!TCF4;;chr2:46524537..46524553,+!p1@EPAS1!0.95!796.96!EPAS1;;chr9:14082760..14082775,-!p6@NFIB!0.95!13.18!NFIB;;chr18:53068940..53068951,-!p21@TCF4!0.95!8.01!TCF4;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.75!ZNF385D;;chr9:14314566..14314618,-!p1@NFIB!0.93!94.58!NFIB;;chr19:13213662..13213686,-!p1@LYL1!0.93!11.37!LYL1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.49!HES2;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.49!HOXD8;;chr19:13213399..13213414,-!p6@LYL1!0.92!7.24!LYL1;;chr15:96869114..96869160,+!p11@NR2F2!0.90!9.56!NR2F2;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.98!DACH1;;chr16:69599899..69599919,+!p2@NFAT5!0.89!81.40!NFAT5;;chr15:96876966..96877017,+!p12@NR2F2!0.89!9.82!NR2F2;;chr10:31288398..31288455,-!p2@ZNF438!0.89!8.01!ZNF438;;chr17:46690839..46690884,-!p1@HOXB8!0.89!6.72!HOXB8;;chr1:158979686..158979745,+!p1@IFI16!0.87!220.43!IFI16;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.34!ZFP64;;chr12:80084167..80084197,-!p5@PAWR!0.86!15.25!PAWR;;chr20:50159198..50159299,-!p1@NFATC2!0.86!9.30!NFATC2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.84!11.89!ELK4;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.94!EBF3;;chr13:72441506..72441562,-!p3@DACH1!0.84!5.94!DACH1;;chr18:53068893..53068902,-!p28@TCF4!0.84!5.94!TCF4;;chr8:106330656..106330684,+!p1@ZFPM2!0.83!16.02!ZFPM2;;chr1:214161272..214161322,+!p1@PROX1!0.83!8.27!PROX1;;chr7:115670792..115670797,-!p2@TFEC!0.83!5.69!TFEC;;chr3:21792585..21792625,-!p2@ZNF385D!0.80!5.94!ZNF385D;;chr18:52989031..52989079,-!p2@TCF4!0.79!12.92!TCF4;;chr9:14314106..14314119,-!p5@NFIB!0.79!9.82!NFIB;;chr9:14083467..14083483,-!p4@NFIB!0.78!13.18!NFIB;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.73!EPAS1;;chr9:14313893..14313908,-!p7@NFIB!0.77!7.24!NFIB;;chr12:80084137..80084165,-!p10@PAWR!0.77!6.46!PAWR;;chr17:46655672..46655697,-!p3@HOXB4!0.77!4.91!HOXB4;;chr17:46691732..46691766,-!p4@HOXB8!0.77!4.91!HOXB8;;chr4:146402997..146403020,+!p1@SMAD1!0.76!36.95!SMAD1;;chr10:35484804..35484902,+!p2@CREM!0.76!19.64!CREM;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.72!HOXB7;;chr15:96873984..96873999,+!p3@NR2F2!0.75!37.21!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.79!GATA2;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.24!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.75!4.65!HOXB3;;chr3:168864383..168864400,-!p7@MECOM!0.75!4.65!MECOM;;chr12:80084018..80084035,-!p17@PAWR!0.75!4.65!PAWR;;chr1:200011711..200011752,+!p3@NR5A2!0.75!4.65!NR5A2;;chr1:47695003..47695042,-!p2@TAL1!0.75!4.65!TAL1;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.21!FLI1;;chr3:114343826..114343869,-!p4@ZBTB20!0.74!9.56!ZBTB20;;chr22:19746969..19746987,+!p2@TBX1!0.73!4.39!TBX1;;chr7:27205136..27205164,-!p1@HOXA9!0.73!4.39!HOXA9;;chr1:47697539..47697573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|expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.31!201.57!ERG;;chr20:62680984..62680999,-!p1@SOX18!2.23!222.76!SOX18;;chr18:53068911..53068935,-!p4@TCF4!2.09!135.67!TCF4;;chr19:46801639..46801699,+!p1@HIF3A!1.85!70.29!HIF3A;;chr5:71803177..71803255,-!p1@ZNF366!1.79!60.99!ZNF366;;chr17:6926362..6926377,+!p1@BCL6B!1.77!58.14!BCL6B;;chr9:124991204..124991246,-!p1@LHX6!1.76!56.59!LHX6;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.42!SOX7;;chr7:115670804..115670825,-!p1@TFEC!1.66!44.96!TFEC;;chr17:46682321..46682362,-!p1@HOXB6!1.55!34.37!HOXB6;;chr12:96588368..96588394,+!p3@ELK3!1.50!80.37!ELK3;;chr17:46688334..46688385,-!p1@HOXB7!1.43!37.47!HOXB7;;chr3:169381420..169381535,-!p1@MECOM!1.42!29.20!MECOM;;chr8:55370487..55370503,+!p1@SOX17!1.35!21.19!SOX17;;chr18:22932080..22932170,-!p1@ZNF521!1.34!87.09!ZNF521;;chr3:114343039..114343085,-!p8@ZBTB20!1.30!19.12!ZBTB20;;chr7:15726296..15726315,-!p1@MEOX2!1.30!18.86!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!1.27!17.57!MEOX2;;chr22:19748231..19748317,+!p1@TBX1!1.26!17.31!TBX1;;chr1:158985493..158985535,+!p4@IFI16!1.24!25.07!IFI16;;chr19:13213511..13213545,-!p2@LYL1!1.21!16.54!LYL1;;chr3:168864315..168864339,-!p2@MECOM!1.17!22.48!MECOM;;chr19:53496768..53496799,-!p1@ZNF702P!1.15!20.16!ZNF702P;;chr2:177053386..177053402,+!p1@HOXD1!1.15!13.18!HOXD1;;chr13:72441315..72441454,-!p1@DACH1!1.14!25.58!DACH1;;chr2:177001290..177001315,+!p1@HOXD3!1.13!12.40!HOXD3;;chr9:16705069..16705086,-!p3@BNC2!1.12!12.15!BNC2;;chr9:14314131..14314147,-!p2@NFIB!1.11!65.90!NFIB;;chr19:46800289..46800327,+!p2@HIF3A!1.08!11.11!HIF3A;;chr6:34204921..34204939,+!p3@HMGA1!1.07!327.41!HMGA1;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.34!TCF4;;chr18:53177984..53178004,-!p17@TCF4!1.05!10.34!TCF4;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.34!KDM5D;;chr11:128563652..128563689,+!p3@FLI1!1.03!9.82!FLI1;;chr10:94449703..94449718,+!p1@HHEX!1.02!37.47!HHEX;;chr4:146402843..146402864,+!p3@SMAD1!1.02!19.12!SMAD1;;chr4:146403912..146403972,+!p5@SMAD1!1.01!11.89!SMAD1;;chr1:200008734..200008765,+!p2@NR5A2!0.98!8.53!NR5A2;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.27!ZFY;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.27!ZNF323;;chr3:178789522..178789564,-!p2@ZMAT3!0.96!61.24!ZMAT3;;chr18:53257001..53257015,-!p5@TCF4!0.96!14.21!TCF4;;chr2:46524537..46524553,+!p1@EPAS1!0.95!796.96!EPAS1;;chr9:14082760..14082775,-!p6@NFIB!0.95!13.18!NFIB;;chr18:53068940..53068951,-!p21@TCF4!0.95!8.01!TCF4;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.75!ZNF385D;;chr9:14314566..14314618,-!p1@NFIB!0.93!94.58!NFIB;;chr19:13213662..13213686,-!p1@LYL1!0.93!11.37!LYL1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.49!HES2;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.49!HOXD8;;chr19:13213399..13213414,-!p6@LYL1!0.92!7.24!LYL1;;chr15:96869114..96869160,+!p11@NR2F2!0.90!9.56!NR2F2;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.98!DACH1;;chr16:69599899..69599919,+!p2@NFAT5!0.89!81.40!NFAT5;;chr15:96876966..96877017,+!p12@NR2F2!0.89!9.82!NR2F2;;chr10:31288398..31288455,-!p2@ZNF438!0.89!8.01!ZNF438;;chr17:46690839..46690884,-!p1@HOXB8!0.89!6.72!HOXB8;;chr1:158979686..158979745,+!p1@IFI16!0.87!220.43!IFI16;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.34!ZFP64;;chr12:80084167..80084197,-!p5@PAWR!0.86!15.25!PAWR;;chr20:50159198..50159299,-!p1@NFATC2!0.86!9.30!NFATC2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.84!11.89!ELK4;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.94!EBF3;;chr13:72441506..72441562,-!p3@DACH1!0.84!5.94!DACH1;;chr18:53068893..53068902,-!p28@TCF4!0.84!5.94!TCF4;;chr8:106330656..106330684,+!p1@ZFPM2!0.83!16.02!ZFPM2;;chr1:214161272..214161322,+!p1@PROX1!0.83!8.27!PROX1;;chr7:115670792..115670797,-!p2@TFEC!0.83!5.69!TFEC;;chr3:21792585..21792625,-!p2@ZNF385D!0.80!5.94!ZNF385D;;chr18:52989031..52989079,-!p2@TCF4!0.79!12.92!TCF4;;chr9:14314106..14314119,-!p5@NFIB!0.79!9.82!NFIB;;chr9:14083467..14083483,-!p4@NFIB!0.78!13.18!NFIB;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.73!EPAS1;;chr9:14313893..14313908,-!p7@NFIB!0.77!7.24!NFIB;;chr12:80084137..80084165,-!p10@PAWR!0.77!6.46!PAWR;;chr17:46655672..46655697,-!p3@HOXB4!0.77!4.91!HOXB4;;chr17:46691732..46691766,-!p4@HOXB8!0.77!4.91!HOXB8;;chr4:146402997..146403020,+!p1@SMAD1!0.76!36.95!SMAD1;;chr10:35484804..35484902,+!p2@CREM!0.76!19.64!CREM;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.72!HOXB7;;chr15:96873984..96873999,+!p3@NR2F2!0.75!37.21!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.79!GATA2;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.24!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.75!4.65!HOXB3;;chr3:168864383..168864400,-!p7@MECOM!0.75!4.65!MECOM;;chr12:80084018..80084035,-!p17@PAWR!0.75!4.65!PAWR;;chr1:200011711..200011752,+!p3@NR5A2!0.75!4.65!NR5A2;;chr1:47695003..47695042,-!p2@TAL1!0.75!4.65!TAL1;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.21!FLI1;;chr3:114343826..114343869,-!p4@ZBTB20!0.74!9.56!ZBTB20;;chr22:19746969..19746987,+!p2@TBX1!0.73!4.39!TBX1;;chr7:27205136..27205164,-!p1@HOXA9!0.73!4.39!HOXA9;;chr1:47697539..47697573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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000222,CL:0005022
|fonse_cell_line=
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|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
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|has_quality=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg38.nobarcode.ctss.bed.gz
|id=FF:11236-116D3
|id=FF:11236-116D3
|is_a=EFO:0002091;;FF:0000049
|is_a=EFO:0002091;;FF:0000049
|is_obsolete=
|is_obsolete=
|library_id=CNhs10865
|library_id_phase_based=2:CNhs10865
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11236
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.TGACCA.11236
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11236
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.TGACCA.11236
|name=Endothelial Cells - Lymphatic, donor1
|name=Endothelial Cells - Lymphatic, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10865,LSID702,release008,COMPLETED
|profile_hcage=CNhs10865,LSID702,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
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|rna_box=116
|rna_box=116
|rna_catalog_number=SC2015
|rna_catalog_number=SC2015
Line 59: Line 82:
|rna_tube_id=116D3
|rna_tube_id=116D3
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10005.TGACCA
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 81: Line 106:
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|top_motifs=PAX6:2.38550557923;FOX{I1,J2}:2.37046180724;HBP1_HMGB_SSRP1_UBTF:1.51055160885;SOX{8,9,10}:1.4988373984;SOX5:1.45437385465;POU3F1..4:1.43566230398;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.42409596625;NFATC1..3:1.41256291445;IKZF2:1.26900771707;RXR{A,B,G}:1.25276170866;SOX2:1.13172500729;FOXD3:1.06349926085;PITX1..3:1.04907016125;SREBF1,2:1.02921710459;bHLH_family:1.01051962155;ARID5B:0.972298310377;PAX1,9:0.923670101495;ELF1,2,4:0.905112756616;RBPJ:0.897182991662;FOXQ1:0.820307025697;FOXP1:0.791481245903;ZFP161:0.780901194183;TEF:0.760633105692;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.739951840721;TLX1..3_NFIC{dimer}:0.718357277507;ADNP_IRX_SIX_ZHX:0.718105062781;XCPE1{core}:0.695850696668;TP53:0.66003940495;AR:0.655604900545;POU1F1:0.632283860649;TFAP4:0.598135426608;ETS1,2:0.596435053177;ZBTB16:0.576543482022;GATA6:0.572054025987;LHX3,4:0.558291249219;PDX1:0.557655343124;LEF1_TCF7_TCF7L1,2:0.543742571262;NKX2-2,8:0.509438486482;FOXL1:0.460081056792;TEAD1:0.458279538705;ALX1:0.45505550797;SPIB:0.449490871008;SPZ1:0.448779190931;TAL1_TCF{3,4,12}:0.436059797801;NANOG:0.434766031652;NR3C1:0.369412992928;YY1:0.362895901575;HMGA1,2:0.344802286623;STAT1,3:0.332350221321;PAX5:0.320837774546;GCM1,2:0.308662515694;GFI1B:0.290293349758;GZF1:0.290218733791;IKZF1:0.278573000225;DMAP1_NCOR{1,2}_SMARC:0.274050064813;FOX{D1,D2}:0.254069338251;BPTF:0.239363817257;SMAD1..7,9:0.2353140503;TFDP1:0.230876854096;PAX4:0.220218684116;NRF1:0.217557687029;PAX8:0.207918441766;STAT2,4,6:0.193641484197;SP1:0.188917526091;SOX17:0.183861640462;ZIC1..3:0.165475471907;ONECUT1,2:0.156282241883;NFE2:0.145128441366;TFAP2{A,C}:0.122338247944;ZNF143:0.111955025168;NKX2-3_NKX2-5:0.111476864518;HAND1,2:0.109072194782;CDC5L:0.0887230858215;EGR1..3:0.0752454707326;PAX2:0.0750029841096;NR5A1,2:0.0667989557484;NFE2L2:0.0638136614918;MED-1{core}:0.0539724625599;TFAP2B:0.0490002308497;HIC1:0.0464659335051;NANOG{mouse}:0.0460697151197;MAZ:0.0407878117013;FOXA2:0.024290827022;SPI1:0.0206242912962;TGIF1:0.01441206281;UFEwm:0.00630827723837;MTE{core}:0.0021254491983;EN1,2:0.00196639420717;EVI1:0.000755885378541;HNF4A_NR2F1,2:-0.00703556699311;FOXO1,3,4:-0.0163630215116;ZBTB6:-0.0216760463957;BACH2:-0.0219945369604;AIRE:-0.0252199423823;PBX1:-0.0287219494199;IRF1,2:-0.031743594843;MYOD1:-0.0449467201857;CUX2:-0.0875113739614;FOXN1:-0.0898798835741;POU6F1:-0.096283192983;FOS_FOS{B,L1}_JUN{B,D}:-0.100828907312;TLX2:-0.109535474378;HOXA9_MEIS1:-0.117143681368;ATF2:-0.119755880794;PRDM1:-0.150607891137;FOX{F1,F2,J1}:-0.176455980157;FOSL2:-0.177242074863;MEF2{A,B,C,D}:-0.18573127585;REST:-0.197475076506;NFY{A,B,C}:-0.206226281343;NFKB1_REL_RELA:-0.208229865676;HES1:-0.208451046317;HNF1A:-0.212128804257;IRF7:-0.21541135754;CREB1:-0.233282533632;LMO2:-0.236145706778;XBP1:-0.238126419134;GTF2I:-0.240803858383;RORA:-0.248649252969;GATA4:-0.258136691896;PATZ1:-0.263830373409;PRRX1,2:-0.289511186416;NFIX:-0.297846972587;ATF6:-0.313879330795;TOPORS:-0.31422860327;PAX3,7:-0.316256618302;HOX{A6,A7,B6,B7}:-0.339875911843;CDX1,2,4:-0.34252871701;CRX:-0.357088675404;MYB:-0.357858054182;NKX6-1,2:-0.36336040442;E2F1..5:-0.367879344577;GFI1:-0.368934937694;RFX1:-0.37451744254;NHLH1,2:-0.380068159981;GTF2A1,2:-0.382452960483;SRF:-0.393527307592;HIF1A:-0.407855681152;EP300:-0.410883705831;ZNF148:-0.42589985875;STAT5{A,B}:-0.43250633211;MZF1:-0.450829265234;ZNF238:-0.475236597388;NR6A1:-0.486834625326;NKX3-2:-0.496652012905;HLF:-0.50849206764;T:-0.518544141653;AHR_ARNT_ARNT2:-0.522598849679;MTF1:-0.533097231239;NFE2L1:-0.537283174698;MYFfamily:-0.538917136061;CEBPA,B_DDIT3:-0.554791340659;PPARG:-0.582410191086;MYBL2:-0.582597085322;OCT4_SOX2{dimer}:-0.587889896618;FOXP3:-0.595839274369;RREB1:-0.622801534425;ELK1,4_GABP{A,B1}:-0.627124547108;FOXM1:-0.629408153362;DBP:-0.632163610039;SNAI1..3:-0.639122203234;GLI1..3:-0.654935656553;ESRRA:-0.686582479201;HOX{A5,B5}:-0.699058158481;KLF4:-0.70606756475;HSF1,2:-0.719744896156;TBP:-0.741054826551;RUNX1..3:-0.759542010309;RFX2..5_RFXANK_RFXAP:-0.759551248682;ZNF384:-0.761290530772;RXRA_VDR{dimer}:-0.763803330625;TFCP2:-0.765958837704;ZNF423:-0.778306703746;ZEB1:-0.856882075157;HOX{A4,D4}:-0.860251672863;NFIL3:-0.860265795901;JUN:-0.869931978164;ATF4:-0.871772885725;ATF5_CREB3:-0.878861785968;BREu{core}:-0.879693363415;HMX1:-0.880281012613;EBF1:-0.886363497718;POU5F1:-0.929337634314;ESR1:-0.945463254959;NKX2-1,4:-0.95855127754;ALX4:-1.02450179121;NR1H4:-1.07283461429;VSX1,2:-1.15029421814;NKX3-1:-1.22609301629;TBX4,5:-1.26213054632;MAFB:-1.31223118005;POU2F1..3:-1.40832455752
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11236-116D3;search_select_hide=table117:FF:11236-116D3
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Endothelial Cells - Lymphatic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10865
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelymph node
dev stagefetus
sexunknown
agefetal
cell typeendothelial cell, lymphatic
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3719
catalog numberSC2015
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005778
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10865 CAGE DRX008223 DRR009095
Accession ID Hg19

Library idBAMCTSS
CNhs10865 DRZ000520 DRZ001905
Accession ID Hg38

Library idBAMCTSS
CNhs10865 DRZ011870 DRZ013255
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005778
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.TGACCA sRNA-Seq DRX037057 DRR041423
Accession ID Hg19

Library idBAMCTSS
SRhi10005.TGACCA DRZ007065


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0854
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.116
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.092
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.407
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0173
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.181
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0291
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.179
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.461
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.209
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0998
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.407
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0998
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10865

Jaspar motifP-value
MA0002.21.66459e-4
MA0003.10.292
MA0004.10.0518
MA0006.10.218
MA0007.10.565
MA0009.10.227
MA0014.10.532
MA0017.10.15
MA0018.25.21013e-6
MA0019.10.856
MA0024.10.0857
MA0025.10.00898
MA0027.10.46
MA0028.10.962
MA0029.10.799
MA0030.10.754
MA0031.10.523
MA0035.20.627
MA0038.10.3
MA0039.20.955
MA0040.10.917
MA0041.10.934
MA0042.10.762
MA0043.15.26654e-6
MA0046.10.461
MA0047.20.123
MA0048.10.0271
MA0050.10.323
MA0051.10.0672
MA0052.10.183
MA0055.10.0231
MA0057.10.695
MA0058.10.0027
MA0059.10.928
MA0060.10.131
MA0061.10.016
MA0062.20.159
MA0065.20.194
MA0066.10.352
MA0067.10.937
MA0068.10.143
MA0069.10.0115
MA0070.10.235
MA0071.10.476
MA0072.10.334
MA0073.10.372
MA0074.10.737
MA0076.10.0525
MA0077.16.70123e-6
MA0078.10.0608
MA0079.20.806
MA0080.20.0599
MA0081.10.214
MA0083.10.0882
MA0084.10.091
MA0087.10.0962
MA0088.10.308
MA0090.10.162
MA0091.10.201
MA0092.10.65
MA0093.10.0384
MA0099.20.162
MA0100.10.504
MA0101.10.683
MA0102.20.00237
MA0103.10.0217
MA0104.20.297
MA0105.10.0617
MA0106.18.81929e-4
MA0107.10.564
MA0108.24.43548e-7
MA0111.10.391
MA0112.20.0162
MA0113.10.852
MA0114.10.153
MA0115.10.364
MA0116.18.33577e-4
MA0117.10.168
MA0119.10.0189
MA0122.10.401
MA0124.10.392
MA0125.10.549
MA0131.10.103
MA0135.10.141
MA0136.10.183
MA0137.20.15
MA0138.20.436
MA0139.10.376
MA0140.10.197
MA0141.10.686
MA0142.10.0991
MA0143.10.591
MA0144.10.952
MA0145.10.874
MA0146.10.23
MA0147.10.264
MA0148.10.0945
MA0149.10.0483
MA0150.10.715
MA0152.10.464
MA0153.10.291
MA0154.10.0313
MA0155.10.82
MA0156.10.0979
MA0157.10.397
MA0159.10.431
MA0160.10.801
MA0162.10.51
MA0163.10.193
MA0164.10.528
MA0258.10.155
MA0259.10.523



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10865

Novel motifP-value
10.35
100.919
1000.217
1010.945
1020.622
1030.554
1040.518
1050.19
1060.18
1070.729
1080.755
1090.762
110.797
1100.215
1110.357
1120.866
1130.959
1140.52
1150.134
1160.463
1170.598
1180.531
1190.335
120.46
1200.156
1210.568
1220.452
1230.334
1240.0458
1250.846
1260.824
1270.077
1280.667
1290.276
130.353
1300.388
1310.567
1320.25
1330.905
1340.42
1350.539
1360.128
1370.293
1380.279
1390.323
140.892
1400.353
1410.644
1423.63791e-4
1430.68
1440.852
1450.019
1460.445
1470.53
1480.0791
1490.526
150.602
1500.62
1510.985
1520.207
1530.491
1540.937
1550.401
1560.211
1570.768
1580.238
1590.118
160.396
1600.55
1610.0328
1620.537
1630.846
1640.201
1650.695
1660.37
1670.734
1680.921
1690.569
170.68
180.0662
190.354
20.173
200.021
210.267
220.79
230.609
240.555
250.11
260.437
270.196
280.535
290.816
30.469
300.0422
310.409
320.146
330.618
340.746
350.274
360.0722
370.229
380.458
390.059
40.0201
400.313
410.272
420.594
430.3
440.672
450.929
460.652
470.984
480.411
490.466
50.798
500.72
510.784
520.272
530.992
540.843
550.363
560.692
570.22
580.0109
590.248
60.564
600.0596
610.913
620.0254
630.751
640.262
650.607
660.85
670.668
680.332
690.674
70.413
700.299
710.366
720.961
730.0195
740.786
750.382
760.251
770.42
780.35
790.642
80.218
800.209
810.412
820.901
830.932
840.636
850.593
860.937
870.956
880.239
890.25
90.12
900.0805
910.495
920.121
930.168
940.362
950.358
960.693
970.347
980.498
990.22



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10865


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)

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