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(Created page with "{{f5samples |id=FF:11245-116E3 |name=Fibroblast - Aortic Adventitial, donor1 |sample_id=11245 |rna_tube_id=116E3 |rna_box=116 |rna_position=E3 |sample_cell_lot=lot:7F32...")
 
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{{f5samples
{{f5samples
|id=FF:11245-116E3
|DRA_sample_Accession=CAGE@SAMD00005860
|name=Fibroblast - Aortic Adventitial, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005860
|sample_id=11245
|HumanCAGEScanFiles=NCig10042;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.pairs.bed.gz
|rna_tube_id=116E3
|accession_numbers=CAGE;DRX008240;DRR009112;DRZ000537;DRZ001922;DRZ011887;DRZ013272
|rna_box=116
|accession_numbers_RNASeq=sRNA-Seq;DRX037185;DRR041551;DRZ007193
|rna_position=E3
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
|sample_cell_lot=lot:7F3236
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
|sample_cell_catalog=CC-7014
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=68 years old adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=68
|sample_ethnicity=A
|rna_rin=10.00000
|rna_od260/230=2.07000
|rna_od260/280=2.00333
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=36.01400
|rna_concentration=1.63700
|sample_note=
|profile_hcage=CNhs10874,LSID703,release008,COMPLETED
|profile_cagescan=NCig10042,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002547,CL:1000306
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000060,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000415,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001062,UBERON:0001637,UBERON:0001981,UBERON:0002049,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004663,UBERON:0004664,UBERON:0004872,UBERON:0004923,UBERON:0005423,UBERON:0005734,UBERON:0005742,UBERON:0006965,UBERON:0007240,UBERON:0007500,UBERON:0007798
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000058
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.70!55.84!PRRX1;;chr8:55370487..55370503,+!p1@SOX17!1.59!37.48!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.49!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.53!87.25!OSR1;;chr1:170633262..170633285,+!p3@PRRX1!1.43!29.25!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.91!ZBED1;;chr21:38071430..38071456,+!p1@SIM2!1.33!20.26!SIM2;;chr18:19749541..19749557,+!p1@GATA6!1.26!53.44!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.25!24.06!GATA6;;chr20:30433396..30433414,-!p1@FOXS1!1.25!16.59!FOXS1;;chr4:174450089..174450153,-!p2@HAND2!1.24!16.46!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.14!12.92!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!64.08!CREB3L1;;chr1:170633058..170633084,+!p5@PRRX1!1.13!12.41!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.90!MSC;;chr16:86600426..86600441,+!p1@FOXC2!1.05!25.71!FOXC2;;chr15:42749722..42749739,-!p2@ZFP106!1.02!17.10!ZFP106;;chr8:72756667..72756736,-!p2@MSC!1.02!15.07!MSC;;chr1:170632477..170632506,+!p6@PRRX1!0.99!8.74!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.28!NFIX;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.80!CREB3L1;;chr5:139492456..139492489,+!p7@PURA!0.95!7.98!PURA;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.46!FOXD1;;chr9:132427972..132428056,+!p1@PRRX2!0.93!10.00!PRRX2;;chr7:44143925..44143970,+!p1@AEBP1!0.90!161.58!AEBP1;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.17!TWIST2;;chr3:141087393..141087426,+!p3@ZBTB38!0.88!27.61!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.88!18.49!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.87!10.00!ZBTB38;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.46!PRRX2;;chr3:25470156..25470227,+!p2@RARB!0.87!6.33!RARB;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.33!NPAS1;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.33!SIM2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.11!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr18:53068911..53068935,-!p4@TCF4!0.86!7.09!TCF4;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.20!PRRX1;;chr1:158979872..158979898,+!p3@IFI16!0.83!18.61!IFI16;;chr2:239756739..239756755,+!p2@TWIST2!0.83!10.26!TWIST2;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.22!AEBP1;;chr19:50432453..50432468,+!p1@ATF5!0.80!326.20!ATF5;;chr1:170632439..170632465,+!p11@PRRX1!0.80!5.32!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.80!5.32!TBX20;;chr10:63809013..63809041,+!p3@ARID5B!0.77!29.88!ARID5B;;chr11:65667884..65667895,-!p2@FOSL1!0.77!20.77!FOSL1;;chr12:66218212..66218244,+!p5@HMGA2!0.77!7.47!HMGA2;;chr8:72756063..72756125,-!p1@MSC!0.76!10.13!MSC;;chr3:168864315..168864339,-!p2@MECOM!0.76!8.10!MECOM;;chr1:170632723..170632739,+!p8@PRRX1!0.76!4.81!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.75!21.65!ZFHX4;;chr12:66218598..66218645,+!p2@HMGA2!0.74!22.67!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.48!GATA6;;chr18:19749353..19749367,+!p4@GATA6!0.74!4.56!GATA6;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.19!FOXD1;;chr15:80843484..80843499,+!p5@ARNT2!0.73!4.43!ARNT2;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.75!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.72!8.23!AEBP1;;chr5:72744445..72744466,-!p2@FOXD1!0.71!7.34!FOXD1;;chr3:141105705..141105770,+!p4@ZBTB38!0.71!5.19!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.70!6.20!MSC;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.05!EBF3;;chr11:65687222..65687240,+!p7@DRAP1!0.69!5.19!DRAP1;;chr5:142780189..142780223,-!p6@NR3C1!0.69!3.93!NR3C1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.69!3.93!RUNX1T1;;chr15:67418177..67418204,+!p9@SMAD3!0.69!3.93!SMAD3;;chr15:96869255..96869291,+!p6@NR2F2!0.68!7.47!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.68!3.80!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.80!FOXC2;;chr3:141087339..141087387,+!p2@ZBTB38!0.67!43.18!ZBTB38;;chr13:45151259..45151326,-!p2@TSC22D1!0.67!25.33!TSC22D1;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.12!DRAP1;;chr1:158979851..158979865,+!p5@IFI16!0.67!8.86!IFI16;;chr12:80085061..80085119,-!p6@PAWR!0.67!6.33!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!0.67!3.67!PKNOX2;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.67!ZNF668;;chr3:157823517..157823562,-!p1@SHOX2!0.66!3.93!SHOX2;;chr6:134210243..134210257,+!p1@TCF21!0.66!3.55!TCF21;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.94!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.65!4.43!TFAP2A;;chr6:85473156..85473210,-!p2@TBX18!0.65!4.43!TBX18;;chr13:45150455..45150472,-!p8@TSC22D1!0.65!3.42!TSC22D1;;chr10:63809106..63809127,+!p1@ARID5B!0.64!54.07!ARID5B;;chr15:67418047..67418093,+!p4@SMAD3!0.64!4.43!SMAD3;;chr1:158979792..158979814,+!p2@IFI16!0.63!36.85!IFI16;;chr15:67418119..67418162,+!p5@SMAD3!0.63!3.67!SMAD3;;chr1:170633100..170633112,+!p19@PRRX1!0.63!3.29!PRRX1;;chr7:1577899..1577943,+!p3@MAFK!0.63!3.29!MAFK;;chr3:169381420..169381535,-!p1@MECOM!0.62!3.80!MECOM;;chr8:11561684..11561751,+!p1@GATA4!0.62!3.17!GATA4;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.17!TBX15;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr7:19157043..19157088,-!p2@TWIST1!0.61!8.74!TWIST1;;chr12:66218183..66218209,+!p4@HMGA2!0.61!6.58!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.04!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.04!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.04!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.61!3.04!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!0.61!3.04!HAND2;;chr8:72755987..72756002,-!p7@MSC!0.61!3.04!MSC;;chr6:34204921..34204939,+!p3@HMGA1!0.60!108.40!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.82!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.60!18.36!HIF1A;;chr1:151032860..151032918,+!p1@MLLT11!0.59!41.66!MLLT11;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!8.86!ARNTL2;;chr9:14083467..14083483,-!p4@NFIB!0.59!8.10!NFIB;;chr6:85474299..85474324,-!p1@TBX18!0.59!5.70!TBX18;;chr6:10412600..10412637,-!p1@TFAP2A!0.59!5.32!TFAP2A;;chr15:96876966..96877017,+!p12@NR2F2!0.59!4.43!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.31!FOXF2;;chr19:13135582..13135600,+!p3@NFIX!0.59!2.91!NFIX;;chr1:170632115..170632136,+!p9@PRRX1!0.59!2.91!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.59!2.91!PRRX1;;chr16:67881588..67881612,-!p2@CENPT!0.58!4.05!CENPT;;chr6:135502501..135502546,+!p1@MYB!0.58!3.55!MYB;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.79!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.57!31.40!HMGA2;;chr9:14082760..14082775,-!p6@NFIB!0.57!4.94!NFIB;;chr19:47922750..47922795,-!p1@MEIS3!0.57!4.94!MEIS3;;chr5:134369905..134369972,-!p1@PITX1!0.57!4.56!PITX1;;chr19:16435625..16435682,+!p1@KLF2!0.56!106.37!KLF2;;chr2:231280954..231280965,+!p2@SP100!0.56!5.45!SP100;;chr19:16435705..16435726,+!p3@KLF2!0.56!2.66!KLF2;;chr19:16435735..16435773,+!p4@KLF2!0.56!2.66!KLF2;;chr19:13106214..13106382,+!p1@NFIX!0.55!74.46!NFIX;;chr3:25469724..25469773,+!p1@RARB!0.55!4.05!RARB;;chr3:21792682..21792720,-!p1@ZNF385D!0.55!2.53!ZNF385D;;chr9:14314522..14314556,-!p3@NFIB!0.54!6.84!NFIB;;chr15:96874145..96874166,+!p7@NR2F2!0.54!5.45!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.54!3.67!NR2F2;;chr19:50435736..50435781,+!p3@ATF5!0.54!3.67!ATF5;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.60!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.53!23.68!MEF2C;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.34!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.53!9.24!AHRR;;chr3:21792585..21792625,-!p2@ZNF385D!0.53!2.79!ZNF385D;;chr11:125034605..125034636,+!p2@PKNOX2!0.53!2.41!PKNOX2;;chr12:80085120..80085156,-!p14@PAWR!0.53!2.41!PAWR;;chr15:67430381..67430396,+!p21@SMAD3!0.53!2.41!SMAD3;;chr1:170632028..170632043,+!p20@PRRX1!0.53!2.41!PRRX1;;chr2:191878874..191878938,-!p1@STAT1!0.52!162.47!STAT1;;chr10:77161504..77161530,-!p1@ZNF503!0.52!39.89!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.52!4.31!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.31!ATOH8;;chr2:119604456..119604501,-!p2@EN1!0.52!2.28!EN1;;chr11:46333934..46333963,+!p5@CREB3L1!0.52!2.28!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!0.52!2.28!IRX2;;chr8:72756380..72756427,-!p8@MSC!0.52!2.28!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.52!2.28!RUNX1T1;;chr19:13136241..13136258,+!p7@NFIX!0.51!3.29!NFIX;;chr6:144329384..144329405,-!p1@PLAGL1!0.50!32.92!PLAGL1;;chr6:19837592..19837621,+!p1@ID4!0.50!16.97!ID4;;chr9:14314131..14314147,-!p2@NFIB!0.50!15.58!NFIB;;chr2:178128149..178128198,-!p2@NFE2L2!0.50!14.94!NFE2L2;;chr15:96869292..96869320,+!p15@NR2F2!0.50!3.42!NR2F2;;chr9:16705069..16705086,-!p3@BNC2!0.50!2.15!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!0.50!2.15!ZNF323;;chr7:150945865..150945896,-!p4@SMARCD3!0.50!2.15!SMARCD3;;chr3:141121871..141121885,+!p13@ZBTB38!0.50!2.15!ZBTB38;;chr3:169381183..169381205,-!p4@MECOM!0.50!2.15!MECOM;;chr12:66218923..66218934,+!p14@HMGA2!0.50!2.15!HMGA2;;chr7:150945754..150945789,-!p2@SMARCD3!0.49!8.10!SMARCD3;;chr10:63809134..63809145,+!p6@ARID5B!0.49!5.83!ARID5B;;chr12:80084137..80084165,-!p10@PAWR!0.49!2.91!PAWR;;chr15:37391588..37391604,-!p11@MEIS2!0.49!2.91!MEIS2;;chr8:72756213..72756243,-!p5@MSC!0.49!2.91!MSC;;chr3:168865194..168865245,-!p3@MECOM!0.49!2.91!MECOM;;chr20:48599506..48599526,+!p1@SNAI1!0.48!17.22!SNAI1;;chr17:1959369..1959388,+!p2@HIC1!0.48!6.58!HIC1;;chr10:63809077..63809089,+!p5@ARID5B!0.48!5.32!ARID5B;;chr9:14313893..14313908,-!p7@NFIB!0.48!3.29!NFIB;;chr8:72756023..72756055,-!p6@MSC!0.48!2.66!MSC;;chr5:142780237..142780261,-!p7@NR3C1!0.48!2.03!NR3C1;;chr11:46299443..46299459,+!p4@CREB3L1!0.48!2.03!CREB3L1;;chr3:141121820..141121838,+!p9@ZBTB38!0.48!2.03!ZBTB38;;chr7:77428149..77428220,+!p1@PHTF2!0.47!26.97!PHTF2;;chr6:126102292..126102329,+!p3@NCOA7!0.47!8.23!NCOA7;;chr19:13134457..13134462,+!p5@NFIX!0.47!4.05!NFIX;;chr1:151032922..151032951,+!p2@MLLT11!0.47!3.80!MLLT11;;chr12:80085255..80085284,-!p9@PAWR!0.47!3.17!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.47!2.28!CREB3L1;;chr3:52001448..52001478,-!p2@PCBP4!0.46!35.96!PCBP4;;chr12:96588368..96588394,+!p3@ELK3!0.46!6.33!ELK3;;chr8:106330656..106330684,+!p1@ZFPM2!0.46!6.20!ZFPM2;;chr13:45151403..45151433,-!p5@TSC22D1!0.46!5.07!TSC22D1;;chr1:158979922..158979933,+!p13@IFI16!0.46!1.90!IFI16;;chr1:170632310..1706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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002547;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 44:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg38.nobarcode.ctss.bed.gz
|id=FF:11245-116E3
|is_a=EFO:0002091;;FF:0000058
|is_obsolete=
|library_id=CNhs10874
|library_id_phase_based=2:CNhs10874
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11245
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.TGACCA.11245
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11245
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.TGACCA.11245
|name=Fibroblast - Aortic Adventitial, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=NCig10042,,,
|profile_hcage=CNhs10874,LSID703,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_catalog_number=N/A
|rna_concentration=1.637
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.07
|rna_od260/280=2.003333333
|rna_position=E3
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=1.16E+05
|rna_weight_ug=36.014
|rnaseq_library_id=SRhi10012.TGACCA
|sample_age=68
|sample_category=primary cells
|sample_cell_catalog=CC-7014
|sample_cell_line=
|sample_cell_lot=lot:7F3236
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=68 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=A
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.5389076388424e-234!GO:0005737;cytoplasm;3.01171346908493e-191!GO:0043226;organelle;1.36064273706588e-183!GO:0043229;intracellular organelle;2.5078360705315e-183!GO:0043231;intracellular membrane-bound organelle;4.32960166404899e-180!GO:0043227;membrane-bound organelle;1.03226998309792e-179!GO:0044422;organelle part;2.96261330226905e-139!GO:0044446;intracellular organelle part;6.87900478140923e-138!GO:0044444;cytoplasmic part;6.24224578942198e-135!GO:0032991;macromolecular complex;1.157870054037e-100!GO:0044238;primary metabolic process;5.14553956990426e-85!GO:0030529;ribonucleoprotein complex;3.64411905575064e-84!GO:0044237;cellular metabolic process;2.05872540374264e-83!GO:0005515;protein binding;1.65459463200541e-82!GO:0043170;macromolecule metabolic process;3.34851614809942e-78!GO:0043233;organelle lumen;4.0789357754388e-70!GO:0031974;membrane-enclosed lumen;4.0789357754388e-70!GO:0005634;nucleus;1.26787427578479e-67!GO:0044428;nuclear part;4.81577472506575e-67!GO:0003723;RNA binding;8.61725878033721e-65!GO:0005739;mitochondrion;4.30147234199648e-63!GO:0019538;protein metabolic process;6.51735472866841e-53!GO:0016043;cellular component organization and biogenesis;3.94441330745327e-52!GO:0005840;ribosome;1.52631365296332e-51!GO:0043234;protein complex;2.64995504165265e-51!GO:0006412;translation;5.39742274733749e-51!GO:0031090;organelle membrane;8.19475130804105e-49!GO:0044260;cellular macromolecule metabolic process;8.33489972955798e-47!GO:0044267;cellular protein metabolic process;3.09900026276764e-46!GO:0006396;RNA processing;6.54614671547779e-46!GO:0003735;structural constituent of ribosome;9.16421752602154e-46!GO:0033036;macromolecule localization;3.44765724382907e-44!GO:0015031;protein transport;3.61260460414549e-44!GO:0044429;mitochondrial part;8.14165739659695e-43!GO:0009058;biosynthetic process;1.15876900179486e-41!GO:0045184;establishment of protein localization;4.40542662376604e-41!GO:0008104;protein localization;6.08948562863224e-41!GO:0031981;nuclear lumen;8.2405735654073e-41!GO:0043283;biopolymer metabolic process;2.1600665131186e-40!GO:0044249;cellular biosynthetic process;8.84674168296318e-40!GO:0005829;cytosol;1.93832288437323e-39!GO:0009059;macromolecule biosynthetic process;5.56113460487399e-39!GO:0033279;ribosomal subunit;7.30610875589507e-39!GO:0031967;organelle envelope;1.15968140853802e-37!GO:0031975;envelope;2.18502065512106e-37!GO:0016071;mRNA metabolic process;8.04547275713176e-36!GO:0010467;gene expression;8.59021971421404e-36!GO:0046907;intracellular transport;8.95219441749e-36!GO:0008380;RNA splicing;4.39159153189506e-34!GO:0043228;non-membrane-bound organelle;4.89473628323342e-34!GO:0043232;intracellular non-membrane-bound organelle;4.89473628323342e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.26383913609102e-33!GO:0006996;organelle organization and biogenesis;1.67723228477236e-33!GO:0065003;macromolecular complex assembly;2.07425324421666e-32!GO:0006397;mRNA processing;1.98935676375035e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.12893143275787e-30!GO:0006886;intracellular protein transport;2.82763260344495e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.38141988083775e-29!GO:0022607;cellular component assembly;1.78631995106923e-28!GO:0005740;mitochondrial envelope;1.76351943047558e-27!GO:0031966;mitochondrial membrane;7.05798919150078e-26!GO:0006259;DNA metabolic process;1.12598404858101e-25!GO:0019866;organelle inner membrane;3.55478876662707e-25!GO:0005654;nucleoplasm;1.27237823213223e-24!GO:0005681;spliceosome;2.1471687131328e-24!GO:0005743;mitochondrial inner membrane;1.88649547242777e-23!GO:0007049;cell cycle;2.94826591008089e-23!GO:0051641;cellular localization;3.42264279015174e-23!GO:0051649;establishment of cellular localization;5.10082886828242e-23!GO:0044445;cytosolic part;8.47083721516417e-23!GO:0006457;protein folding;1.20901493387633e-22!GO:0006119;oxidative phosphorylation;4.49608942076222e-22!GO:0000166;nucleotide binding;1.19868083581907e-21!GO:0016462;pyrophosphatase activity;2.67159329005087e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.34765704393561e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.86354489610471e-21!GO:0017111;nucleoside-triphosphatase activity;1.08413314319196e-20!GO:0005783;endoplasmic reticulum;1.16773460616558e-20!GO:0015934;large ribosomal subunit;1.53010671068979e-20!GO:0044455;mitochondrial membrane part;3.1980658978331e-20!GO:0012505;endomembrane system;7.87786255212787e-20!GO:0044451;nucleoplasm part;1.5590495885553e-19!GO:0015935;small ribosomal subunit;2.81107227076869e-19!GO:0048770;pigment granule;1.47564643213255e-18!GO:0042470;melanosome;1.47564643213255e-18!GO:0031980;mitochondrial lumen;3.52812122331022e-18!GO:0005759;mitochondrial matrix;3.52812122331022e-18!GO:0003676;nucleic acid binding;6.29367591558845e-18!GO:0022618;protein-RNA complex assembly;8.9636020105357e-18!GO:0022402;cell cycle process;9.59172975777014e-18!GO:0000278;mitotic cell cycle;1.5437710582936e-17!GO:0005730;nucleolus;3.92746121014593e-17!GO:0016874;ligase activity;5.60017190375905e-17!GO:0006512;ubiquitin cycle;6.3933614012771e-17!GO:0044432;endoplasmic reticulum part;9.60993764411217e-17!GO:0008134;transcription factor binding;1.79611298379586e-16!GO:0005794;Golgi apparatus;2.00385757545473e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.28867589187906e-16!GO:0005746;mitochondrial respiratory chain;3.37328687199671e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.77389446754722e-16!GO:0032553;ribonucleotide binding;1.13571382516441e-15!GO:0032555;purine ribonucleotide binding;1.13571382516441e-15!GO:0008135;translation factor activity, nucleic acid binding;1.65030594544157e-15!GO:0017076;purine nucleotide binding;1.92508022143862e-15!GO:0043285;biopolymer catabolic process;2.1969505180582e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.02797486460099e-15!GO:0006605;protein targeting;3.2792896975691e-15!GO:0044265;cellular macromolecule catabolic process;4.11683901858166e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.43993298475973e-15!GO:0019941;modification-dependent protein catabolic process;5.54722006994684e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.54722006994684e-15!GO:0048193;Golgi vesicle transport;5.54722006994684e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.83122631867529e-15!GO:0044257;cellular protein catabolic process;8.32894054746217e-15!GO:0006974;response to DNA damage stimulus;1.06270933092625e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.23565650473711e-14!GO:0003954;NADH dehydrogenase activity;1.23565650473711e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.23565650473711e-14!GO:0005761;mitochondrial ribosome;1.58008866446595e-14!GO:0000313;organellar ribosome;1.58008866446595e-14!GO:0051186;cofactor metabolic process;1.68084033197333e-14!GO:0051082;unfolded protein binding;2.16538580808051e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.97644017414801e-14!GO:0030163;protein catabolic process;3.22606655283351e-14!GO:0009057;macromolecule catabolic process;3.57622768258983e-14!GO:0016192;vesicle-mediated transport;6.05971300197153e-14!GO:0016070;RNA metabolic process;2.73277099986591e-13!GO:0005694;chromosome;2.78858036674716e-13!GO:0000087;M phase of mitotic cell cycle;3.19096652683451e-13!GO:0007067;mitosis;4.50185405431175e-13!GO:0043412;biopolymer modification;4.63205580708232e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.33718275492468e-13!GO:0042254;ribosome biogenesis and assembly;5.70081336812254e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.39570201269828e-13!GO:0042773;ATP synthesis coupled electron transport;6.39570201269828e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.04919112816897e-13!GO:0045271;respiratory chain complex I;8.04919112816897e-13!GO:0005747;mitochondrial respiratory chain complex I;8.04919112816897e-13!GO:0044248;cellular catabolic process;1.10571874178221e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.28148152090048e-12!GO:0000375;RNA splicing, via transesterification reactions;1.28148152090048e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.28148152090048e-12!GO:0005524;ATP binding;1.30366297094473e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.10313137045499e-12!GO:0032559;adenyl ribonucleotide binding;2.38794312044015e-12!GO:0022403;cell cycle phase;3.09739346646995e-12!GO:0030554;adenyl nucleotide binding;5.53790670230222e-12!GO:0044427;chromosomal part;5.99525007128153e-12!GO:0003743;translation initiation factor activity;6.20606541224482e-12!GO:0051301;cell division;8.45026815271525e-12!GO:0005793;ER-Golgi intermediate compartment;1.05254424595435e-11!GO:0006464;protein modification process;1.09437747792848e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.36368006782804e-11!GO:0006281;DNA repair;1.67988704134769e-11!GO:0006413;translational initiation;1.76811516307906e-11!GO:0006732;coenzyme metabolic process;2.30907931244151e-11!GO:0048523;negative regulation of cellular process;2.48123033849254e-11!GO:0009055;electron carrier activity;2.91488067930061e-11!GO:0005789;endoplasmic reticulum membrane;4.34514524767334e-11!GO:0051276;chromosome organization and biogenesis;4.49205240247092e-11!GO:0003712;transcription cofactor activity;5.0994117257324e-11!GO:0005635;nuclear envelope;5.24973433923334e-11!GO:0012501;programmed cell death;6.61713158692061e-11!GO:0031965;nuclear membrane;1.10480278330369e-10!GO:0006915;apoptosis;1.22701710544159e-10!GO:0009719;response to endogenous stimulus;1.50604416128679e-10!GO:0044453;nuclear membrane part;1.79322276411114e-10!GO:0051726;regulation of cell cycle;1.98152975830649e-10!GO:0009259;ribonucleotide metabolic process;2.00163795027086e-10!GO:0006446;regulation of translational initiation;2.38371320337796e-10!GO:0000074;regulation of progression through cell cycle;2.58209956383748e-10!GO:0008639;small protein conjugating enzyme activity;2.97794873852088e-10!GO:0016887;ATPase activity;3.13262613111642e-10!GO:0006260;DNA replication;3.81777743664413e-10!GO:0043687;post-translational protein modification;4.59254433528424e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.95396134522689e-10!GO:0004842;ubiquitin-protein ligase activity;6.52614676104924e-10!GO:0006163;purine nucleotide metabolic process;7.07349009580943e-10!GO:0019787;small conjugating protein ligase activity;7.62412509227393e-10!GO:0006913;nucleocytoplasmic transport;8.09079194545547e-10!GO:0016604;nuclear body;9.56957105322887e-10!GO:0000279;M phase;1.09784395259594e-09!GO:0042623;ATPase activity, coupled;1.18801330620492e-09!GO:0008219;cell death;1.19150153076821e-09!GO:0016265;death;1.19150153076821e-09!GO:0048519;negative regulation of biological process;1.33100033908657e-09!GO:0009150;purine ribonucleotide metabolic process;1.58602302674134e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.67448960384498e-09!GO:0051169;nuclear transport;1.7729363755778e-09!GO:0008565;protein transporter activity;2.48732697780691e-09!GO:0006461;protein complex assembly;2.88794756244293e-09!GO:0009260;ribonucleotide biosynthetic process;3.78486748727164e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.89110410486601e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.22510388983527e-09!GO:0006164;purine nucleotide biosynthetic process;4.23651918115988e-09!GO:0006399;tRNA metabolic process;4.47050360076416e-09!GO:0006323;DNA packaging;4.98368557099636e-09!GO:0003924;GTPase activity;5.00583582285947e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.93580154288067e-09!GO:0065004;protein-DNA complex assembly;6.55473140292724e-09!GO:0051246;regulation of protein metabolic process;7.62316471344667e-09!GO:0009141;nucleoside triphosphate metabolic process;9.42998297890127e-09!GO:0009152;purine ribonucleotide biosynthetic process;9.50504538264759e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.08938064666074e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.08938064666074e-08!GO:0006366;transcription from RNA polymerase II promoter;1.11531218394086e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.38960763106141e-08!GO:0009060;aerobic respiration;1.61021707961139e-08!GO:0005788;endoplasmic reticulum lumen;1.61797346343666e-08!GO:0015986;ATP synthesis coupled proton transport;1.61797346343666e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.61797346343666e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.73698678700953e-08!GO:0030120;vesicle coat;1.74302436369675e-08!GO:0030662;coated vesicle membrane;1.74302436369675e-08!GO:0016881;acid-amino acid ligase activity;1.76628584599046e-08!GO:0005643;nuclear pore;2.5065149817094e-08!GO:0006364;rRNA processing;2.55034367516657e-08!GO:0065002;intracellular protein transport across a membrane;3.51707820885068e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.51707820885068e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.51707820885068e-08!GO:0006333;chromatin assembly or disassembly;4.13292727076914e-08!GO:0016607;nuclear speck;4.72284195150393e-08!GO:0016072;rRNA metabolic process;4.88181890533914e-08!GO:0050794;regulation of cellular process;5.45739064075046e-08!GO:0045333;cellular respiration;6.3747933520265e-08!GO:0004386;helicase activity;6.45621549372406e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.53573081033595e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.53573081033595e-08!GO:0017038;protein import;7.04492607489293e-08!GO:0009056;catabolic process;7.34276170950809e-08!GO:0046034;ATP metabolic process;7.36679483846566e-08!GO:0005768;endosome;9.15033370478787e-08!GO:0015630;microtubule cytoskeleton;9.67556403290613e-08!GO:0048475;coated membrane;9.77853477409129e-08!GO:0030117;membrane coat;9.77853477409129e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.2426104081241e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.2426104081241e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.2426104081241e-07!GO:0019829;cation-transporting ATPase activity;1.34182645079964e-07!GO:0016491;oxidoreductase activity;1.52149897230102e-07!GO:0000785;chromatin;1.53969537026758e-07!GO:0043038;amino acid activation;1.77034881865022e-07!GO:0006418;tRNA aminoacylation for protein translation;1.77034881865022e-07!GO:0043039;tRNA aminoacylation;1.77034881865022e-07!GO:0006099;tricarboxylic acid cycle;2.40170970169446e-07!GO:0046356;acetyl-CoA catabolic process;2.40170970169446e-07!GO:0051187;cofactor catabolic process;2.51559655688576e-07!GO:0006334;nucleosome assembly;2.52378552614072e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.58571974411469e-07!GO:0008026;ATP-dependent helicase activity;3.10603203396801e-07!GO:0051188;cofactor biosynthetic process;3.58174435353262e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.81121162048926e-07!GO:0043566;structure-specific DNA binding;3.81121162048926e-07!GO:0003697;single-stranded DNA binding;3.86085734233344e-07!GO:0032446;protein modification by small protein conjugation;3.90970359869618e-07!GO:0006754;ATP biosynthetic process;3.91060578735576e-07!GO:0006753;nucleoside phosphate metabolic process;3.91060578735576e-07!GO:0007005;mitochondrion organization and biogenesis;4.12008933561081e-07!GO:0009117;nucleotide metabolic process;4.1497904821832e-07!GO:0046930;pore complex;4.17757946448524e-07!GO:0050657;nucleic acid transport;4.29715051739486e-07!GO:0051236;establishment of RNA localization;4.29715051739486e-07!GO:0050658;RNA transport;4.29715051739486e-07!GO:0006403;RNA localization;4.42153957187837e-07!GO:0044431;Golgi apparatus part;4.45779145879907e-07!GO:0009109;coenzyme catabolic process;4.56016789772432e-07!GO:0016567;protein ubiquitination;4.87536659079686e-07!GO:0031324;negative regulation of cellular metabolic process;5.70138051023817e-07!GO:0043069;negative regulation of programmed cell death;6.95607562459378e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.52663253894136e-07!GO:0031497;chromatin assembly;9.54077116827887e-07!GO:0006084;acetyl-CoA metabolic process;1.00288177808935e-06!GO:0016853;isomerase activity;1.09048552502684e-06!GO:0043067;regulation of programmed cell death;1.12322218845123e-06!GO:0042981;regulation of apoptosis;1.20448547326062e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.25368227438762e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.32185322438043e-06!GO:0003714;transcription corepressor activity;1.33870437129318e-06!GO:0043066;negative regulation of apoptosis;1.49402867598834e-06!GO:0016859;cis-trans isomerase activity;1.60809648105879e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.1501196819751e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.21328173930881e-06!GO:0031988;membrane-bound vesicle;2.55378867576723e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.59104060988565e-06!GO:0016564;transcription repressor activity;3.29413887808845e-06!GO:0006916;anti-apoptosis;3.32220812866022e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.45068607067122e-06!GO:0000151;ubiquitin ligase complex;3.76086678412329e-06!GO:0005667;transcription factor complex;4.03003057042712e-06!GO:0045259;proton-transporting ATP synthase complex;4.03521705574491e-06!GO:0044440;endosomal part;4.10566178518449e-06!GO:0010008;endosome membrane;4.10566178518449e-06!GO:0005773;vacuole;4.11405197418872e-06!GO:0005798;Golgi-associated vesicle;4.3387134788184e-06!GO:0009892;negative regulation of metabolic process;4.43789865005735e-06!GO:0005525;GTP binding;4.81634839780588e-06!GO:0006613;cotranslational protein targeting to membrane;5.76108104502723e-06!GO:0000245;spliceosome assembly;5.78233344972405e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.90753937547646e-06!GO:0005819;spindle;5.98719637041713e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.22697091717707e-06!GO:0006752;group transfer coenzyme metabolic process;6.71616180950195e-06!GO:0045786;negative regulation of progression through cell cycle;6.75851944358281e-06!GO:0008361;regulation of cell size;8.49203346748653e-06!GO:0016740;transferase activity;9.06851239144426e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.25748878257667e-06!GO:0009108;coenzyme biosynthetic process;1.03882197440844e-05!GO:0051170;nuclear import;1.03882197440844e-05!GO:0016779;nucleotidyltransferase activity;1.04016027412904e-05!GO:0016049;cell growth;1.14364906866054e-05!GO:0031252;leading edge;1.19610284895388e-05!GO:0016787;hydrolase activity;1.27276381872168e-05!GO:0051028;mRNA transport;1.29449886575119e-05!GO:0005770;late endosome;1.3315958998717e-05!GO:0031982;vesicle;1.34432083566468e-05!GO:0005905;coated pit;1.3578522270712e-05!GO:0045454;cell redox homeostasis;1.38403777252315e-05!GO:0031410;cytoplasmic vesicle;1.42834276481696e-05!GO:0004298;threonine endopeptidase activity;1.44856538200185e-05!GO:0050789;regulation of biological process;1.46982169254199e-05!GO:0006793;phosphorus metabolic process;1.47720274306558e-05!GO:0006796;phosphate metabolic process;1.47720274306558e-05!GO:0016310;phosphorylation;1.59451952620736e-05!GO:0003724;RNA helicase activity;2.00769463850836e-05!GO:0006606;protein import into nucleus;2.01058992646732e-05!GO:0032561;guanyl ribonucleotide binding;2.11211839322827e-05!GO:0019001;guanyl nucleotide binding;2.11211839322827e-05!GO:0000323;lytic vacuole;2.41612474882717e-05!GO:0005764;lysosome;2.41612474882717e-05!GO:0001558;regulation of cell growth;2.43613358884914e-05!GO:0051329;interphase of mitotic cell cycle;2.45313124055612e-05!GO:0051789;response to protein stimulus;2.68804220442327e-05!GO:0006986;response to unfolded protein;2.68804220442327e-05!GO:0007010;cytoskeleton organization and biogenesis;2.83136024604669e-05!GO:0030867;rough endoplasmic reticulum membrane;2.87259621259856e-05!GO:0005762;mitochondrial large ribosomal subunit;2.94717251870882e-05!GO:0000315;organellar large ribosomal subunit;2.94717251870882e-05!GO:0043623;cellular protein complex assembly;3.06104196209517e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.36649984093707e-05!GO:0031968;organelle outer membrane;3.44320676022461e-05!GO:0005813;centrosome;3.62642244631722e-05!GO:0003713;transcription coactivator activity;3.99022661703853e-05!GO:0000139;Golgi membrane;4.06359463280077e-05!GO:0019867;outer membrane;4.07315642642809e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.18415801364664e-05!GO:0000775;chromosome, pericentric region;4.46567949674065e-05!GO:0008654;phospholipid biosynthetic process;4.77375269384148e-05!GO:0051325;interphase;5.38673652119452e-05!GO:0006091;generation of precursor metabolites and energy;5.41765289340236e-05!GO:0007051;spindle organization and biogenesis;5.52935422338268e-05!GO:0016563;transcription activator activity;5.66853636807834e-05!GO:0005769;early endosome;6.01458934720747e-05!GO:0016568;chromatin modification;6.29706806078887e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.52093873713638e-05!GO:0005815;microtubule organizing center;7.22406954346981e-05!GO:0043021;ribonucleoprotein binding;7.88757732951403e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.13659738048888e-05!GO:0003899;DNA-directed RNA polymerase activity;0.000108521702413089!GO:0006612;protein targeting to membrane;0.000113772523430685!GO:0005048;signal sequence binding;0.000114817518616585!GO:0005741;mitochondrial outer membrane;0.000127079006211311!GO:0048522;positive regulation of cellular process;0.000149276815915569!GO:0033116;ER-Golgi intermediate compartment membrane;0.000152537307611413!GO:0000314;organellar small ribosomal subunit;0.000155881788893012!GO:0005763;mitochondrial small ribosomal subunit;0.000155881788893012!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000161912016622115!GO:0016481;negative regulation of transcription;0.000162289530590343!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000169987050688457!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000245502597901225!GO:0000075;cell cycle checkpoint;0.000259655062120782!GO:0008092;cytoskeletal protein binding;0.000287930560360777!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000289445980763!GO:0005885;Arp2/3 protein complex;0.00030285926553819!GO:0008186;RNA-dependent ATPase activity;0.000338777949535414!GO:0006261;DNA-dependent DNA replication;0.00037014604690678!GO:0009165;nucleotide biosynthetic process;0.000376111715376326!GO:0030029;actin filament-based process;0.000391397628845348!GO:0007050;cell cycle arrest;0.000395821332729575!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000435398746852084!GO:0051427;hormone receptor binding;0.00045016395411093!GO:0016363;nuclear matrix;0.00045016395411093!GO:0008250;oligosaccharyl transferase complex;0.000467003513605165!GO:0030663;COPI coated vesicle membrane;0.00048118712566145!GO:0030126;COPI vesicle coat;0.00048118712566145!GO:0030133;transport vesicle;0.000481964003971025!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000552455462510414!GO:0016044;membrane organization and biogenesis;0.000579950642531831!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000606020545801037!GO:0019899;enzyme binding;0.000615677100489186!GO:0004576;oligosaccharyl transferase activity;0.000679103956804419!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000681488247557953!GO:0006839;mitochondrial transport;0.000691283159776388!GO:0006626;protein targeting to mitochondrion;0.000731573726723443!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000744001731859476!GO:0005791;rough endoplasmic reticulum;0.000765588822328657!GO:0006414;translational elongation;0.00080216178456148!GO:0035257;nuclear hormone receptor binding;0.000862093195150758!GO:0040008;regulation of growth;0.00086458147511532!GO:0018196;peptidyl-asparagine modification;0.000866925499033294!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000866925499033294!GO:0000786;nucleosome;0.000868993771681388!GO:0003690;double-stranded DNA binding;0.000876280160418057!GO:0051252;regulation of RNA metabolic process;0.000881514073814229!GO:0051920;peroxiredoxin activity;0.000890217077760642!GO:0004004;ATP-dependent RNA helicase activity;0.000905400942635081!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00090817693283912!GO:0019843;rRNA binding;0.000963724183147289!GO:0043681;protein import into mitochondrion;0.000988686888710981!GO:0046474;glycerophospholipid biosynthetic process;0.000994683360557309!GO:0016197;endosome transport;0.00102700990827394!GO:0051168;nuclear export;0.00107745179592597!GO:0006891;intra-Golgi vesicle-mediated transport;0.00108437469426026!GO:0000776;kinetochore;0.00117375871758468!GO:0031072;heat shock protein binding;0.00128083256562842!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00134755367764032!GO:0030658;transport vesicle membrane;0.00135017096532931!GO:0030137;COPI-coated vesicle;0.00135017096532931!GO:0007243;protein kinase cascade;0.00140353359392933!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00147074932315134!GO:0015399;primary active transmembrane transporter activity;0.00147074932315134!GO:0043284;biopolymer biosynthetic process;0.0015145256628668!GO:0048500;signal recognition particle;0.00168972453509516!GO:0003729;mRNA binding;0.00173986650177455!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00181621943033536!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00181621943033536!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00181621943033536!GO:0005657;replication fork;0.00209564376765084!GO:0030132;clathrin coat of coated pit;0.00223768159362872!GO:0019222;regulation of metabolic process;0.00226184372112854!GO:0000082;G1/S transition of mitotic cell cycle;0.00227653570144325!GO:0004177;aminopeptidase activity;0.00232194036061608!GO:0065009;regulation of a molecular function;0.00235993099828732!GO:0046489;phosphoinositide biosynthetic process;0.00250367908696681!GO:0044262;cellular carbohydrate metabolic process;0.0026711488845998!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00267738999162262!GO:0044452;nucleolar part;0.00272327621624467!GO:0008180;signalosome;0.0027514938720927!GO:0000059;protein import into nucleus, docking;0.0028063624506819!GO:0005874;microtubule;0.00282685674711125!GO:0030176;integral to endoplasmic reticulum membrane;0.00306760643637683!GO:0030027;lamellipodium;0.00314697803390585!GO:0008047;enzyme activator activity;0.00315603426622305!GO:0015631;tubulin binding;0.00320800898884232!GO:0006950;response to stress;0.00324193633438646!GO:0030659;cytoplasmic vesicle membrane;0.00327294572513349!GO:0006383;transcription from RNA polymerase III promoter;0.00337932539892461!GO:0048487;beta-tubulin binding;0.00342858412788527!GO:0007006;mitochondrial membrane organization and biogenesis;0.00345697469686896!GO:0030118;clathrin coat;0.00346519394343466!GO:0007264;small GTPase mediated signal transduction;0.00354257220273772!GO:0007088;regulation of mitosis;0.00363198488209098!GO:0006302;double-strand break repair;0.00365013764010489!GO:0008094;DNA-dependent ATPase activity;0.0036644554568204!GO:0046483;heterocycle metabolic process;0.00379919986927526!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00382102386456151!GO:0045047;protein targeting to ER;0.00382102386456151!GO:0007052;mitotic spindle organization and biogenesis;0.00394852450644174!GO:0008033;tRNA processing;0.00399468596454875!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00411310782476176!GO:0008312;7S RNA binding;0.00414909204173798!GO:0016126;sterol biosynthetic process;0.00420691808899695!GO:0030134;ER to Golgi transport vesicle;0.00420980399115059!GO:0030660;Golgi-associated vesicle membrane;0.00433617919517272!GO:0003711;transcription elongation regulator activity;0.00435194304979944!GO:0003746;translation elongation factor activity;0.00459402177444153!GO:0006509;membrane protein ectodomain proteolysis;0.00460039950631898!GO:0033619;membrane protein proteolysis;0.00460039950631898!GO:0003684;damaged DNA binding;0.00468972944382563!GO:0031901;early endosome membrane;0.00468972944382563!GO:0007093;mitotic cell cycle checkpoint;0.00474506059723976!GO:0048471;perinuclear region of cytoplasm;0.00477781645410738!GO:0051128;regulation of cellular component organization and biogenesis;0.00485517353752825!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00486097324683477!GO:0051087;chaperone binding;0.00495486321842241!GO:0003682;chromatin binding;0.00496503490601721!GO:0065007;biological regulation;0.00518897782517314!GO:0043488;regulation of mRNA stability;0.00518897782517314!GO:0043487;regulation of RNA stability;0.00518897782517314!GO:0030880;RNA polymerase complex;0.00532236665076999!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00544999327153082!GO:0042802;identical protein binding;0.0054611680091542!GO:0000049;tRNA binding;0.00546374269481022!GO:0006402;mRNA catabolic process;0.00553988086278473!GO:0008632;apoptotic program;0.00558984352925004!GO:0033673;negative regulation of kinase activity;0.00570426101224493!GO:0006469;negative regulation of protein kinase activity;0.00570426101224493!GO:0008139;nuclear localization sequence binding;0.00600570971797527!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00608660144867279!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00635354730950445!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00635354730950445!GO:0017166;vinculin binding;0.00665286137629208!GO:0007040;lysosome organization and biogenesis;0.00676717761067715!GO:0005869;dynactin complex;0.00706537684325058!GO:0045045;secretory pathway;0.00713843748546582!GO:0030127;COPII vesicle coat;0.0071450283282608!GO:0012507;ER to Golgi transport vesicle membrane;0.0071450283282608!GO:0046467;membrane lipid biosynthetic process;0.0071450283282608!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00718474736078524!GO:0006417;regulation of translation;0.00722711282550606!GO:0044433;cytoplasmic vesicle part;0.00727585054846169!GO:0009967;positive regulation of signal transduction;0.00728899668262222!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00751274441734319!GO:0005684;U2-dependent spliceosome;0.00753799489605561!GO:0051052;regulation of DNA metabolic process;0.00801513644781346!GO:0051348;negative regulation of transferase activity;0.00801858274743879!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00804897531912489!GO:0030125;clathrin vesicle coat;0.00822855277212656!GO:0030665;clathrin coated vesicle membrane;0.00822855277212656!GO:0008022;protein C-terminus binding;0.00848449622920887!GO:0032984;macromolecular complex disassembly;0.00860875553378366!GO:0030521;androgen receptor signaling pathway;0.00867929966367816!GO:0048518;positive regulation of biological process;0.00869056513769028!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00902653049520617!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00904298204502613!GO:0015992;proton transport;0.0093900109104928!GO:0045941;positive regulation of transcription;0.0093900109104928!GO:0051287;NAD binding;0.00940133968238455!GO:0005862;muscle thin filament tropomyosin;0.00960013599892148!GO:0006595;polyamine metabolic process;0.00963517183506839!GO:0000339;RNA cap binding;0.00986900511756923!GO:0016272;prefoldin complex;0.0099881830629561!GO:0006818;hydrogen transport;0.0102051393535382!GO:0043022;ribosome binding;0.0103739429464111!GO:0006352;transcription initiation;0.0103739429464111!GO:0006892;post-Golgi vesicle-mediated transport;0.0104007175621487!GO:0006289;nucleotide-excision repair;0.0107394544141162!GO:0019752;carboxylic acid metabolic process;0.0108903761600498!GO:0043433;negative regulation of transcription factor activity;0.0108925972110098!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0110625990848163!GO:0000428;DNA-directed RNA polymerase complex;0.0110625990848163!GO:0043492;ATPase activity, coupled to movement of substances;0.0113582810091192!GO:0006082;organic acid metabolic process;0.0117906324638514!GO:0046519;sphingoid metabolic process;0.0119557472937457!GO:0005637;nuclear inner membrane;0.0121259495557703!GO:0045792;negative regulation of cell size;0.0121709161398334!GO:0006401;RNA catabolic process;0.0122164453219572!GO:0043624;cellular protein complex disassembly;0.0123262121784911!GO:0045893;positive regulation of transcription, DNA-dependent;0.0126937702969066!GO:0031124;mRNA 3'-end processing;0.0127695637951133!GO:0035258;steroid hormone receptor binding;0.0129137281597231!GO:0005832;chaperonin-containing T-complex;0.0129426266094576!GO:0045892;negative regulation of transcription, DNA-dependent;0.0133168477691429!GO:0008610;lipid biosynthetic process;0.0133168477691429!GO:0051540;metal cluster binding;0.0134582831840936!GO:0051536;iron-sulfur cluster binding;0.0134582831840936!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0135701621886774!GO:0007033;vacuole organization and biogenesis;0.0135729774400784!GO:0001726;ruffle;0.0137452943154328!GO:0009889;regulation of biosynthetic process;0.0138399862909404!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0139292963415426!GO:0008154;actin polymerization and/or depolymerization;0.0140052279033268!GO:0005096;GTPase activator activity;0.0140468177920939!GO:0003756;protein disulfide isomerase activity;0.0141313540255111!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0141313540255111!GO:0003678;DNA helicase activity;0.0141313540255111!GO:0030041;actin filament polymerization;0.014303857601145!GO:0043241;protein complex disassembly;0.014303857601145!GO:0001527;microfibril;0.0143059107576157!GO:0022408;negative regulation of cell-cell adhesion;0.0143278846188866!GO:0030119;AP-type membrane coat adaptor complex;0.0145846208854288!GO:0006497;protein amino acid lipidation;0.0145846208854288!GO:0030308;negative regulation of cell growth;0.0146020320793721!GO:0012506;vesicle membrane;0.0150107224250087!GO:0016408;C-acyltransferase activity;0.0154067310537599!GO:0050662;coenzyme binding;0.0158406195578856!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0158406195578856!GO:0006695;cholesterol biosynthetic process;0.0158888426575059!GO:0031326;regulation of cellular biosynthetic process;0.0170022232851905!GO:0016584;nucleosome positioning;0.0170563822514701!GO:0051539;4 iron, 4 sulfur cluster binding;0.0173738818256616!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0178225269796065!GO:0006650;glycerophospholipid metabolic process;0.0184388224767772!GO:0009116;nucleoside metabolic process;0.0184831626225373!GO:0006672;ceramide metabolic process;0.0186423907375984!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0192022444628638!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0192339186140769!GO:0007059;chromosome segregation;0.0192708629615095!GO:0031902;late endosome membrane;0.0193997674953076!GO:0006354;RNA elongation;0.0194618893816425!GO:0005669;transcription factor TFIID complex;0.0197143305200785!GO:0007034;vacuolar transport;0.019922890052201!GO:0000096;sulfur amino acid metabolic process;0.020229981812633!GO:0007160;cell-matrix adhesion;0.0203884455132783!GO:0000209;protein polyubiquitination;0.0206837938282184!GO:0016251;general RNA polymerase II transcription factor activity;0.0206837938282184!GO:0051101;regulation of DNA binding;0.0207392259678421!GO:0045936;negative regulation of phosphate metabolic process;0.0209069595630807!GO:0050811;GABA receptor binding;0.0219822760599662!GO:0007021;tubulin folding;0.0220906349225247!GO:0005774;vacuolar membrane;0.0221955329882556!GO:0031589;cell-substrate adhesion;0.0222566978678024!GO:0006520;amino acid metabolic process;0.0228690820070366!GO:0051098;regulation of binding;0.0229825234759476!GO:0006144;purine base metabolic process;0.0231107148952263!GO:0006740;NADPH regeneration;0.0231107148952263!GO:0006098;pentose-phosphate shunt;0.0231107148952263!GO:0009112;nucleobase metabolic process;0.0231696551442081!GO:0004674;protein serine/threonine kinase activity;0.0234368254327307!GO:0030384;phosphoinositide metabolic process;0.0234873765063229!GO:0006979;response to oxidative stress;0.0236655305157942!GO:0001953;negative regulation of cell-matrix adhesion;0.0239085183824711!GO:0030833;regulation of actin filament polymerization;0.0240345351994131!GO:0031529;ruffle organization and biogenesis;0.0240613991367219!GO:0032508;DNA duplex unwinding;0.024115858431411!GO:0032392;DNA geometric change;0.024115858431411!GO:0001952;regulation of cell-matrix adhesion;0.0242529137317763!GO:0006778;porphyrin metabolic process;0.0242794802992384!GO:0033013;tetrapyrrole metabolic process;0.0242794802992384!GO:0008168;methyltransferase activity;0.0243590456482128!GO:0008652;amino acid biosynthetic process;0.0245324174717616!GO:0005876;spindle microtubule;0.0247810171713225!GO:0030131;clathrin adaptor complex;0.0252084510963275!GO:0048468;cell development;0.0256809598014186!GO:0006897;endocytosis;0.0260628066357011!GO:0010324;membrane invagination;0.0260628066357011!GO:0030496;midbody;0.0262054883115134!GO:0008147;structural constituent of bone;0.0264852965486817!GO:0006984;ER-nuclear signaling pathway;0.0265126242180708!GO:0042770;DNA damage response, signal transduction;0.0273809986019753!GO:0031418;L-ascorbic acid binding;0.0273809986019753!GO:0006506;GPI anchor biosynthetic process;0.0274641579322929!GO:0006007;glucose catabolic process;0.0275482425963866!GO:0048144;fibroblast proliferation;0.0278409709440517!GO:0048145;regulation of fibroblast proliferation;0.0278409709440517!GO:0006405;RNA export from nucleus;0.0278409709440517!GO:0005801;cis-Golgi network;0.0279835099521242!GO:0006611;protein export from nucleus;0.028393993351084!GO:0031543;peptidyl-proline dioxygenase activity;0.0284081952420345!GO:0022890;inorganic cation transmembrane transporter activity;0.0285613665943932!GO:0031625;ubiquitin protein ligase binding;0.0288176821186158!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.029199808853752!GO:0033043;regulation of organelle organization and biogenesis;0.029199808853752!GO:0016741;transferase activity, transferring one-carbon groups;0.0304209017122963!GO:0006376;mRNA splice site selection;0.0308593093043143!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0308593093043143!GO:0022415;viral reproductive process;0.0309457263658396!GO:0006220;pyrimidine nucleotide metabolic process;0.0310668158909103!GO:0016860;intramolecular oxidoreductase activity;0.0310791495563796!GO:0006378;mRNA polyadenylation;0.0311283747706467!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0313519084498979!GO:0015002;heme-copper terminal oxidase activity;0.0313519084498979!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0313519084498979!GO:0004129;cytochrome-c oxidase activity;0.0313519084498979!GO:0022411;cellular component disassembly;0.0314151373820859!GO:0019206;nucleoside kinase activity;0.0322962337693505!GO:0050681;androgen receptor binding;0.0326990544663962!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0335500386952119!GO:0001872;zymosan binding;0.0336825394495928!GO:0001878;response to yeast;0.0336825394495928!GO:0008320;protein transmembrane transporter activity;0.0338880699220829!GO:0000792;heterochromatin;0.0339129093251991!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0341672793007462!GO:0031272;regulation of pseudopodium formation;0.0344262859751185!GO:0031269;pseudopodium formation;0.0344262859751185!GO:0031344;regulation of cell projection organization and biogenesis;0.0344262859751185!GO:0031268;pseudopodium organization and biogenesis;0.0344262859751185!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0344262859751185!GO:0031274;positive regulation of pseudopodium formation;0.0344262859751185!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0344615356314113!GO:0031123;RNA 3'-end processing;0.0345000464715272!GO:0035035;histone acetyltransferase binding;0.0345670131019997!GO:0032940;secretion by cell;0.0346071950177925!GO:0008629;induction of apoptosis by intracellular signals;0.0346071950177925!GO:0030508;thiol-disulfide exchange intermediate activity;0.034624223948506!GO:0008538;proteasome activator activity;0.0347328088848255!GO:0006268;DNA unwinding during replication;0.0349384249985972!GO:0031371;ubiquitin conjugating enzyme complex;0.0353330796824187!GO:0048146;positive regulation of fibroblast proliferation;0.0357295485370439!GO:0009303;rRNA transcription;0.0360155002169226!GO:0004287;prolyl oligopeptidase activity;0.0360155002169226!GO:0005784;translocon complex;0.0361573345767242!GO:0047485;protein N-terminus binding;0.0362891040925939!GO:0006505;GPI anchor metabolic process;0.0364465874291754!GO:0007017;microtubule-based process;0.0367759563181284!GO:0006275;regulation of DNA replication;0.0368862129804094!GO:0000922;spindle pole;0.0369664608646477!GO:0030032;lamellipodium biogenesis;0.0371053279684206!GO:0006310;DNA recombination;0.0372835301564683!GO:0042158;lipoprotein biosynthetic process;0.0373750484468254!GO:0030145;manganese ion binding;0.0374152645741925!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0375505051525154!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0384138912296231!GO:0032906;transforming growth factor-beta2 production;0.038531226991271!GO:0032909;regulation of transforming growth factor-beta2 production;0.038531226991271!GO:0030518;steroid hormone receptor signaling pathway;0.0386824401410369!GO:0000287;magnesium ion binding;0.0393628102113265!GO:0006284;base-excision repair;0.0393628102113265!GO:0051059;NF-kappaB binding;0.0408234253776119!GO:0003779;actin binding;0.0408234253776119!GO:0005092;GDP-dissociation inhibitor activity;0.0408234253776119!GO:0030503;regulation of cell redox homeostasis;0.0410806526216717!GO:0042168;heme metabolic process;0.0411749959721659!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0412804321873139!GO:0019798;procollagen-proline dioxygenase activity;0.0412804321873139!GO:0050790;regulation of catalytic activity;0.0413246826599477!GO:0008637;apoptotic mitochondrial changes;0.0416292122202487!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0417970985079034!GO:0000910;cytokinesis;0.0421799409643272!GO:0007030;Golgi organization and biogenesis;0.0425590089999696!GO:0042326;negative regulation of phosphorylation;0.0426576724112463!GO:0043065;positive regulation of apoptosis;0.0428504140856254!GO:0030433;ER-associated protein catabolic process;0.0441593546522274!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0441593546522274!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0442496879395571!GO:0044437;vacuolar part;0.045782783717423!GO:0006518;peptide metabolic process;0.0458542808348328!GO:0008234;cysteine-type peptidase activity;0.0458613181681425!GO:0008097;5S rRNA binding;0.0458613181681425!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0458613181681425!GO:0030911;TPR domain binding;0.0466830136652103!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0466830136652103!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0466830136652103!GO:0006118;electron transport;0.047177658981847!GO:0006607;NLS-bearing substrate import into nucleus;0.0476629141314632!GO:0005758;mitochondrial intermembrane space;0.0477997872415042!GO:0008287;protein serine/threonine phosphatase complex;0.0496320626203282!GO:0007162;negative regulation of cell adhesion;0.0497317361818495!GO:0004527;exonuclease activity;0.0497402174306573
|sample_id=11245
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|top_motifs=HSF1,2:1.66203140516;NKX2-2,8:1.58804072824;HMGA1,2:1.57038882225;UFEwm:1.54939401058;TAL1_TCF{3,4,12}:1.44117962098;EVI1:1.42548437243;HOX{A5,B5}:1.3920468884;GCM1,2:1.35160650942;XBP1:1.27394104746;IKZF1:1.2386982981;HES1:1.19902139096;AIRE:1.18990596077;MYBL2:1.15608244003;CDC5L:1.12520460662;TEAD1:1.10530547396;KLF4:1.08015702966;NR3C1:1.07333172715;HMX1:1.06500850581;ALX4:1.01432525532;GLI1..3:0.985903970864;EBF1:0.973615367932;NFE2L1:0.959311290704;LHX3,4:0.958918542168;TLX1..3_NFIC{dimer}:0.950943005967;ZIC1..3:0.945645508004;SRF:0.943652895476;GATA4:0.872559839417;NFIX:0.866670211374;GTF2A1,2:0.831786119311;TFAP4:0.790034486893;EN1,2:0.789936205289;MAFB:0.789435899892;ZNF384:0.722275822454;NKX3-2:0.703412701458;FOXL1:0.691652275101;NKX3-1:0.689717386457;RXR{A,B,G}:0.674522456459;TP53:0.656068895833;ADNP_IRX_SIX_ZHX:0.651977758173;NFATC1..3:0.631897456259;HBP1_HMGB_SSRP1_UBTF:0.624576658476;ESR1:0.59933475573;ZNF238:0.592311735875;ZBTB6:0.57557441496;POU3F1..4:0.567751696675;SMAD1..7,9:0.549425291155;HOX{A4,D4}:0.509070039979;PRDM1:0.500308531206;TBX4,5:0.486033722775;SOX17:0.468046103878;ATF6:0.444735540111;GTF2I:0.433458570349;GZF1:0.428543709096;HAND1,2:0.427074664326;MAZ:0.406522479463;ZNF423:0.391393637594;ARID5B:0.378455919254;SOX2:0.37772391631;ZNF148:0.365449345706;MYB:0.362792670366;TBP:0.35910091631;MTE{core}:0.342103145605;POU5F1:0.30218089012;HIF1A:0.295856451247;YY1:0.283598367786;E2F1..5:0.276850890148;SOX{8,9,10}:0.276521372383;XCPE1{core}:0.271596518718;FOXD3:0.268682152436;GFI1:0.266639159145;TEF:0.25131740791;NANOG{mouse}:0.249444359213;PPARG:0.236306797344;ELK1,4_GABP{A,B1}:0.23254227545;MZF1:0.224168134221;NFE2L2:0.202248699307;ONECUT1,2:0.195680710747;HLF:0.174966886389;POU1F1:0.170228040453;MEF2{A,B,C,D}:0.164415204569;GFI1B:0.138527848856;HIC1:0.135729805655;PAX8:0.12784267563;RXRA_VDR{dimer}:0.113070584792;ZNF143:0.0997345530017;TFAP2B:0.0877573238222;bHLH_family:0.0801102101011;FOXO1,3,4:0.0790313248475;FOSL2:0.0751052998179;HOXA9_MEIS1:0.0722450633054;TLX2:0.0706927356884;NR6A1:0.0693093076282;NRF1:0.0541554544941;TOPORS:0.0431649023343;PATZ1:0.0378840123277;STAT2,4,6:0.0191283292012;FOX{I1,J2}:0.0165937773767;BACH2:0.0164084967749;SPZ1:0.0103151819425;STAT5{A,B}:-0.007218116883;TFDP1:-0.00764193257664;CEBPA,B_DDIT3:-0.00844093208864;LEF1_TCF7_TCF7L1,2:-0.00845011777584;REST:-0.0113132789592;NFY{A,B,C}:-0.0170630970806;FOS_FOS{B,L1}_JUN{B,D}:-0.03108314284;DBP:-0.035528666426;PAX6:-0.0387063120858;PAX5:-0.0632188795311;NHLH1,2:-0.0781562939326;AR:-0.0798264492067;HNF1A:-0.081860998486;MYFfamily:-0.0907160420533;TFCP2:-0.102857552338;MTF1:-0.133584207081;NFIL3:-0.156162578236;TGIF1:-0.164771028954;IKZF2:-0.170048800979;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.171774786451;NKX2-1,4:-0.172419077471;RREB1:-0.200055637501;ELF1,2,4:-0.21196503895;PDX1:-0.230474409861;NFE2:-0.254491676147;ZFP161:-0.256550678277;IRF1,2:-0.268106647309;GATA6:-0.281325524474;STAT1,3:-0.282104085567;RFX1:-0.298765978943;FOXM1:-0.316237039413;VSX1,2:-0.31820336743;LMO2:-0.330801595333;MED-1{core}:-0.336802624744;DMAP1_NCOR{1,2}_SMARC:-0.346241471911;RUNX1..3:-0.35223028786;EGR1..3:-0.352352120473;HNF4A_NR2F1,2:-0.353983449043;NR5A1,2:-0.357346751563;TFAP2{A,C}:-0.377624160239;SPI1:-0.377804411288;SOX5:-0.392765462321;PAX3,7:-0.395867339902;JUN:-0.399238593699;AHR_ARNT_ARNT2:-0.406228071083;SP1:-0.420100107634;NFKB1_REL_RELA:-0.427483785941;IRF7:-0.430046839406;T:-0.437022987629;EP300:-0.437514558592;CREB1:-0.445570000644;PAX1,9:-0.476967956899;SPIB:-0.498342645278;FOXP3:-0.506286008463;SREBF1,2:-0.510051878418;ETS1,2:-0.513548179398;FOXA2:-0.517203716435;NKX6-1,2:-0.523175286882;FOX{D1,D2}:-0.525083817957;PRRX1,2:-0.540090778835;BREu{core}:-0.553591557353;BPTF:-0.565644865938;SNAI1..3:-0.567739790869;ATF2:-0.569803373254;PBX1:-0.570214596483;PAX4:-0.57782428841;CRX:-0.606981615904;PAX2:-0.631981305803;ATF5_CREB3:-0.640609956145;OCT4_SOX2{dimer}:-0.645731013579;HOX{A6,A7,B6,B7}:-0.650133065897;ESRRA:-0.656563740496;CDX1,2,4:-0.704058958929;ZBTB16:-0.711583076449;NANOG:-0.73603454417;FOXP1:-0.803204760255;ZEB1:-0.818968539764;RBPJ:-0.843520782818;PITX1..3:-0.861030052081;ATF4:-0.863126304835;NR1H4:-0.865189253046;POU2F1..3:-0.895261924804;FOXN1:-0.989071420051;ALX1:-0.990856573458;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01324241291;RFX2..5_RFXANK_RFXAP:-1.03146763582;CUX2:-1.04879187847;POU6F1:-1.05630297732;NKX2-3_NKX2-5:-1.11084497829;MYOD1:-1.12081588629;FOX{F1,F2,J1}:-1.3494191269;FOXQ1:-1.35862952278;RORA:-1.40960348103
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11245-116E3;search_select_hide=table117:FF:11245-116E3
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Fibroblast - Aortic Adventitial, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10874
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage68 years old adult
sexfemale
age68
cell typefibroblast
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005860
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10874 CAGE DRX008240 DRR009112
Accession ID Hg19

Library idBAMCTSS
CNhs10874 DRZ000537 DRZ001922
Accession ID Hg38

Library idBAMCTSS
CNhs10874 DRZ011887 DRZ013272
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10042downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005860
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.TGACCA sRNA-Seq DRX037185 DRR041551
Accession ID Hg19

Library idBAMCTSS
SRhi10012.TGACCA DRZ007193


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0308
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0259
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.658
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.105
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0518
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.33
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0475
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0426
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.098
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.152
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00935
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.098
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0292
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0339
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.148
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.261
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0518
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.826
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.29
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.499
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.774
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.591
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.692
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10874

Jaspar motifP-value
MA0002.20.123
MA0003.10.955
MA0004.10.0686
MA0006.10.0704
MA0007.10.797
MA0009.10.286
MA0014.10.452
MA0017.10.151
MA0018.26.68389e-7
MA0019.10.456
MA0024.10.926
MA0025.10.0426
MA0027.10.705
MA0028.10.886
MA0029.10.318
MA0030.10.0933
MA0031.10.074
MA0035.20.388
MA0038.10.224
MA0039.20.039
MA0040.10.806
MA0041.10.665
MA0042.10.913
MA0043.11.40105e-4
MA0046.10.0816
MA0047.20.363
MA0048.10.0257
MA0050.10.00607
MA0051.10.214
MA0052.10.312
MA0055.10.447
MA0057.10.327
MA0058.10.0238
MA0059.10.76
MA0060.10.0647
MA0061.10.0304
MA0062.23.90044e-4
MA0065.20.303
MA0066.10.45
MA0067.18.83091e-4
MA0068.10.72
MA0069.10.222
MA0070.10.937
MA0071.10.342
MA0072.10.257
MA0073.10.799
MA0074.10.897
MA0076.10.297
MA0077.10.63
MA0078.10.797
MA0079.20.669
MA0080.25.43151e-8
MA0081.10.0342
MA0083.10.0275
MA0084.10.0838
MA0087.10.231
MA0088.10.702
MA0090.17.04462e-5
MA0091.10.123
MA0092.10.0501
MA0093.10.0783
MA0099.20.361
MA0100.10.927
MA0101.19.17684e-4
MA0102.20.0039
MA0103.10.00242
MA0104.20.0415
MA0105.10.638
MA0106.10.163
MA0107.10.00149
MA0108.20.445
MA0111.10.086
MA0112.20.0714
MA0113.10.503
MA0114.10.0546
MA0115.10.0351
MA0116.10.219
MA0117.10.485
MA0119.10.0633
MA0122.10.72
MA0124.10.762
MA0125.10.869
MA0131.10.895
MA0135.10.167
MA0136.19.60864e-9
MA0137.20.777
MA0138.20.843
MA0139.10.494
MA0140.10.626
MA0141.10.357
MA0142.10.346
MA0143.10.699
MA0144.10.736
MA0145.10.544
MA0146.10.149
MA0147.10.284
MA0148.10.412
MA0149.10.89
MA0150.10.069
MA0152.10.0061
MA0153.10.224
MA0154.10.428
MA0155.10.397
MA0156.13.10264e-5
MA0157.10.641
MA0159.10.535
MA0160.10.0117
MA0162.10.0353
MA0163.10.0172
MA0164.10.937
MA0258.10.912
MA0259.10.356



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10874

Novel motifP-value
10.9
100.538
1000.735
1010.508
1020.295
1030.277
1040.878
1050.156
1060.578
1070.0835
1080.813
1090.286
110.735
1100.729
1110.457
1120.949
1130.00468
1140.471
1150.0756
1160.104
1170.981
1180.322
1190.554
120.182
1200.184
1210.923
1220.101
1232.27635e-4
1240.0798
1250.948
1260.26
1270.0952
1280.809
1290.692
130.892
1300.622
1310.342
1320.764
1330.501
1340.647
1350.867
1360.221
1370.243
1380.0842
1390.801
140.14
1400.517
1410.903
1420.692
1430.754
1440.857
1450.267
1460.448
1470.128
1480.551
1490.0121
150.52
1500.0388
1510.456
1520.0828
1530.681
1540.935
1550.00345
1560.425
1570.096
1580.00212
1590.167
160.0363
1600.555
1610.834
1620.894
1630.9
1640.331
1650.612
1660.31
1670.757
1680.631
1690.254
170.628
180.199
190.0165
20.599
200.657
210.0673
220.608
230.675
240.677
250.359
260.79
270.894
280.248
290.309
30.729
300.458
310.66
326.11409e-11
330.866
340.694
350.687
360.0779
370.251
380.328
390.266
40.444
400.297
410.783
420.728
430.66
440.106
450.474
460.537
470.788
480.832
490.125
50.897
500.946
510.732
520.832
530.0691
540.905
550.243
560.653
570.955
580.238
590.268
60.284
600.645
610.591
620.743
630.547
640.592
650.657
660.703
670.721
680.876
690.606
70.47
700.797
710.301
720.957
730.0184
740.0721
750.394
760.313
770.0559
780.344
790.00357
80.217
800.497
810.793
820.984
830.75
840.418
850.965
860.607
870.017
880.608
890.0765
90.933
900.646
910.673
920.502
930.487
940.85
950.319
960.433
970.572
980.104
990.0075



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10874


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000058 (human fibroblast of the aortic adventitia sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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