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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004786
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004786
|HumanCAGEScanFiles=NCig10043;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008310;DRR009182;DRZ000607;DRZ001992;DRZ011957;DRZ013342
|accession_numbers_RNASeq=sRNA-Seq;DRX036993;DRR041359;DRZ007001
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.58!379.91!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.47!297.02!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.98!150.05!FOXQ1;;chr7:115608357..115608372,-!p3@TFEC!1.91!79.82!TFEC;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.40!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.82!65.80!FOXA1;;chr20:42984330..42984364,+!p2@HNF4A!1.81!63.71!HNF4A;;chr7:115608319..115608352,-!p4@TFEC!1.78!58.79!TFEC;;chr20:43029862..43029900,+!p1@HNF4A!1.68!47.35!HNF4A;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.67!45.63!SEBOX;;chr19:46806868..46806883,+!p3@HIF3A!1.66!44.40!HIF3A;;chr13:28543431..28543487,-!p1@CDX2!1.64!42.19!CDX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.62!40.59!MLXIPL;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!46.12!TFAP2C;;chr11:61520075..61520136,+!p1@C11orf9!1.56!72.56!C11orf9;;chr14:38064590..38064606,-!p2@FOXA1!1.55!34.19!FOXA1;;chr1:201979703..201979721,+!p2@ELF3!1.51!31.73!ELF3;;chr2:16080659..16080685,+!p1@MYCN!1.48!29.03!MYCN;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.74!GATA6;;chr19:33793430..33793447,-!p1@CEBPA!1.45!110.32!CEBPA;;chr8:102504651..102504683,+!p1@GRHL2!1.42!25.09!GRHL2;;chr13:28543285..28543314,-!p2@CDX2!1.41!24.97!CDX2;;chr11:34642612..34642646,+!p1@EHF!1.38!23.24!EHF;;chr1:42801540..42801562,-!p4@FOXJ3!1.38!22.88!FOXJ3;;chr2:171571827..171571853,+!p1@SP5!1.37!22.26!SP5;;chr13:28543388..28543406,-!p3@CDX2!1.34!21.03!CDX2;;chr1:209979467..209979494,-!p1@IRF6!1.33!23.00!IRF6;;chr17:45928521..45928539,-!p1@SP6!1.32!19.80!SP6;;chr15:96869511..96869525,+!p16@NR2F2!1.31!21.65!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.83!PROX1;;chrX:131547625..131547644,-!p4@MBNL3!1.28!17.96!MBNL3;;chr16:85932760..85932775,+!p1@IRF8!1.27!17.59!IRF8;;chr5:2751762..2751784,-!p1@IRX2!1.22!15.62!IRX2;;chr6:126221034..126221056,+!p13@NCOA7!1.22!15.62!NCOA7;;chr13:73633131..73633149,+!p1@KLF5!1.21!159.02!KLF5;;chr18:19749386..19749404,+!p2@GATA6!1.20!21.28!GATA6;;chr20:22564895..22564910,-!p1@FOXA2!1.16!13.53!FOXA2;;chr17:53342311..53342400,+!p1@HLF!1.15!15.00!HLF;;chr13:28543253..28543276,-!p5@CDX2!1.14!12.91!CDX2;;chr7:27205136..27205164,-!p1@HOXA9!1.14!12.79!HOXA9;;chr11:16419037..16419064,-!p3@SOX6!1.14!12.67!SOX6;;chr11:2291814..2291825,-!p2@ASCL2!1.12!12.18!ASCL2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.12!12.18!HOXC5;;chr5:124084493..124084524,-!p2@ZNF608!1.11!26.44!ZNF608;;chr19:926055..926068,+!p2@ARID3A!1.09!24.97!ARID3A;;chr8:76319876..76319926,+!p1@HNF4G!1.03!9.59!HNF4G;;chr9:138591319..138591340,-!p1@SOHLH1!1.02!9.47!SOHLH1;;chr2:25475120..25475176,-!p2@DNMT3A!0.99!12.05!DNMT3A;;chr12:103351444..103351461,+!p1@ASCL1!0.99!8.86!ASCL1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.41!PITX1;;chr3:71355163..71355209,-!p5@FOXP1!0.98!11.93!FOXP1;;chr7:27196267..27196311,-!p1@HOXA7!0.98!8.49!HOXA7;;chr19:926001..926046,+!p1@ARID3A!0.97!29.64!ARID3A;;chr12:121416455..121416479,+!p2@HNF1A!0.97!8.36!HNF1A;;chr20:50159198..50159299,-!p1@NFATC2!0.96!12.18!NFATC2;;chr11:65554528..65554546,+!p1@OVOL1!0.96!8.12!OVOL1;;chr10:97889464..97889494,+!p3@ZNF518A!0.95!15.13!ZNF518A;;chr10:8095593..8095625,+!p3@GATA3!0.95!9.47!GATA3;;chr19:46367576..46367592,+!p1@FOXA3!0.95!7.87!FOXA3;;chr19:58326246..58326262,-!p2@ZNF552!0.94!18.57!ZNF552;;chr17:36105042..36105060,-!p1@HNF1B!0.94!7.63!HNF1B;;chr17:41623692..41623715,-!p1@ETV4!0.93!33.08!ETV4;;chr6:126240380..126240430,+!p2@NCOA7!0.93!20.17!NCOA7;;chr13:28543316..28543329,-!p4@CDX2!0.93!7.50!CDX2;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.50!OTX1;;chr3:24536253..24536328,-!p1@THRB!0.92!14.02!THRB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.44!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.91!20.79!EPAS1;;chr8:71316428..71316459,-!p2@NCOA2!0.91!12.18!NCOA2;;chr20:6748325..6748352,+!p1@BMP2!0.91!10.58!BMP2;;chr17:46687959..46688007,-!p2@HOXB7!0.91!10.09!HOXB7;;chr5:76383133..76383186,-!p2@ZBED3!0.90!14.76!ZBED3;;chr5:2751785..2751808,-!p2@IRX2!0.90!7.01!IRX2;;chr1:199996831..199996843,+!p4@NR5A2!0.89!6.76!NR5A2;;chr20:50418128..50418147,-!p2@SALL4!0.88!6.64!SALL4;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.64!YBX2;;chr18:19749504..19749515,+!p5@GATA6!0.88!6.64!GATA6;;chr3:24536231..24536249,-!p4@THRB!0.88!6.52!THRB;;chr13:79177703..79177729,-!p2@POU4F1!0.88!6.52!POU4F1;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.52!MNX1;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.60!NCOA4;;chr10:48355030..48355090,+!p1@ZNF488!0.86!8.12!ZNF488;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.19!GATA6;;chr11:65554563..65554576,+!p2@OVOL1!0.85!6.03!OVOL1;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.78!PITX1;;chr8:71316403..71316427,-!p6@NCOA2!0.82!6.89!NCOA2;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.27!PPARG;;chrX:84498989..84499003,+!p1@ZNF711!0.80!7.50!ZNF711;;chr6:126240356..126240379,+!p7@NCOA7!0.80!6.64!NCOA7;;chr16:52581025..52581072,-!p1@TOX3!0.80!5.29!TOX3;;chr11:34642656..34642667,+!p2@EHF!0.80!5.29!EHF;;chr6:21597765..21597779,+!p2@SOX4!0.79!45.87!SOX4;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.6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1:24646002..24646013,+!p3@GRHL3!0.21!0.61!GRHL3;;chr1:2985726..2985752,+!p2@PRDM16!0.21!0.61!PRDM16;;chr1:47697539..47697573,-!p3@TAL1!0.21!0.61!TAL1;;chr1:50889103..50889145,-!p1@DMRTA2!0.21!0.61!DMRTA2;;chr20:56195474..56195506,-!p1@ZBP1!0.21!0.61!ZBP1;;chr19:53606636..53606692,-!p1@ZNF160!0.20!25.58!ZNF160;;chr19:42580274..42580375,+!p1@ZNF574!0.20!15.74!ZNF574;;chr7:77428149..77428220,+!p1@PHTF2!0.20!13.90!PHTF2;;chr10:105110831..105110885,-!p1@PCGF6!0.20!13.28!PCGF6;;chr10:21823128..21823216,+!p1@MLLT10!0.20!12.30!MLLT10;;chr3:141868293..141868355,-!p2@TFDP2!0.20!11.81!TFDP2;;chr2:174828892..174828972,-!p2@SP3!0.20!9.72!SP3;;chr17:80477643..80477678,+!p2@FOXK2!0.20!8.36!FOXK2;;chr5:139493665..139493718,+!p2@PURA!0.20!7.75!PURA;;chr17:5015129..5015187,-!p1@ZNF232!0.20!7.01!ZNF232;;chr19:44488330..44488379,+!p1@ZNF155!0.20!6.27!ZNF155;;chr19:9785724..9785740,-!p2@ZNF562!0.20!4.92!ZNF562;;chr21:27107465..27107557,+!p3@GABPA!0.20!4.43!GABPA;;chr5:139493727..139493766,+!p4@PURA!0.20!3.44!PURA;;chr12:57919293..57919311,+!p3@MBD6!0.20!3.07!MBD6;;chr11:12696002..12696022,+!p2@TEAD1!0.20!2.71!TEAD1;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!0.20!2.46!TCF20;;chr15:90895471..90895543,+!p1@ZNF774!0.20!2.46!ZNF774;;chr4:121843985..121844024,-!p2@PRDM5!0.20!2.34!PRDM5;;chr20:48807456..48807475,+!p3@CEBPB!0.20!1.97!CEBPB;;chr2:46524878..46524891,+!p3@EPAS1!0.20!1.72!EPAS1;;chr5:139494712..139494759,+!p5@PURA!0.20!1.60!PURA;;chr21:34144157..34144175,-!p3@GCFC1!0.20!1.48!GCFC1;;chr12:50479101..50479108,+!p3@SMARCD1!0.20!1.48!SMARCD1;;chr14:64970662..64970688,+!p8@ZBTB1!0.20!0.98!ZBTB1;;chr16:69600209..69600234,+!p4@NFAT5!0.20!0.98!NFAT5;;chr16:73081974..73082002,-!p7@ZFHX3!0.20!0.86!ZFHX3;;chr2:75938128..75938135,-!p3@GCFC2!0.20!0.86!GCFC2;;chr12:115122005..115122016,-!p3@TBX3!0.20!0.86!TBX3;;chr2:191878874..191878938,-!p1@STAT1!0.19!75.15!STAT1;;chr20:49547910..49547988,-!p1@ADNP!0.19!52.15!ADNP;;chr19:9695169..9695188,-!p1@ZNF121!0.19!24.35!ZNF121;;chr14:68283291..68283323,-!p1@ZFYVE26!0.19!22.75!ZFYVE26;;chr14:45722360..45722415,-!p1@MIS18BP1!0.19!21.28!MIS18BP1;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.19!19.56!LCOR;;chr7:139762641..139762768,-!p1@PARP12!0.19!18.57!PARP12;;chr10:77161504..77161530,-!p1@ZNF503!0.19!17.96!ZNF503;;chr9:125675576..125675612,-!p1@ZBTB6!0.19!17.10!ZBTB6;;chr4:38665769..38665801,+!p2@KLF3!0.19!11.93!KLF3;;chr19:57999101..57999158,+!p1@ZNF419!0.19!8.73!ZNF419;;chr19:47617013..47617069,-!p2@ZC3H4!0.19!7.87!ZC3H4;;chr11:123612319..123612395,-!p1@ZNF202!0.19!7.26!ZNF202;;chr16:30406721..30406820,+!p1@ZNF48!0.19!7.01!ZNF48;;chr3:48282587..48282603,+!p1@ZNF589!0.19!5.53!ZNF589;;chr1:935467..935484,-!p1@HES4!0.19!5.41!HES4;;chr19:44439387..44439419,-!p2@ZNF45!0.19!4.43!ZNF45;;chr19:58071201..58071238,-!p1@ZNF550!0.19!4.18!ZNF550;;chr19:58838369..58838439,+!p1@ZSCAN22!0.19!3.81!ZSCAN22;;chr4:4291837..4291859,-!p2@LYAR!0.19!3.81!LYAR;;chr14:89883412..89883478,-!p3@FOXN3!0.19!3.69!FOXN3;;chrX:129402768..129402796,-!p2@ZNF280C!0.19!3.57!ZNF280C;;chr19:44645731..44645786,+!p2@ZNF226,p2@ZNF234!0.19!3.57!ZNF234;;chr22:42229210..42229229,+!p3@SREBF2!0.19!2.46!SREBF2;;chr19:36980455..36980469,-!p2@ZNF566!0.19!2.21!ZNF566;;chr16:30596963..30596999,-!p3@ZNF785!0.19!1.97!ZNF785;;chr11:63684602..63684664,-!p1@RCOR2!0.19!1.97!RCOR2;;chr19:11708311..11708332,+!p2@ZNF627!0.19!1.84!ZNF627;;chr20:52210368..52210384,-!p1@ZNF217!0.19!1.84!ZNF217;;chr14:61191049..61191080,-!p2@SIX4!0.19!1.60!SIX4;;chr10:22292591..22292606,-!p2@DNAJC1!0.19!1.48!DNAJC1;;chr19:44598560..44598576,+!p3@ZNF224!0.19!1.48!ZNF224;;chr19:47922750..47922795,-!p1@MEIS3!0.19!1.48!MEIS3;;chr16:1429674..1429703,-!p3@UNKL!0.19!1.48!UNKL;;chr5:178322893..178322931,+!p1@ZFP2!0.19!1.23!ZFP2;;chr3:44754176..44754196,+!p2@ZNF502!0.19!1.11!ZNF502;;chr10:98592751..98592765,+!p5@LCOR!0.19!0.98!LCOR;;
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.58!379.91!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.47!297.02!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.98!150.05!FOXQ1;;chr7:115608357..115608372,-!p3@TFEC!1.91!79.82!TFEC;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.40!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.82!65.80!FOXA1;;chr20:42984330..42984364,+!p2@HNF4A!1.81!63.71!HNF4A;;chr7:115608319..115608352,-!p4@TFEC!1.78!58.79!TFEC;;chr20:43029862..43029900,+!p1@HNF4A!1.68!47.35!HNF4A;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.67!45.63!SEBOX;;chr19:46806868..46806883,+!p3@HIF3A!1.66!44.40!HIF3A;;chr13:28543431..28543487,-!p1@CDX2!1.64!42.19!CDX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.62!40.59!MLXIPL;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!46.12!TFAP2C;;chr11:61520075..61520136,+!p1@C11orf9!1.56!72.56!C11orf9;;chr14:38064590..38064606,-!p2@FOXA1!1.55!34.19!FOXA1;;chr1:201979703..201979721,+!p2@ELF3!1.51!31.73!ELF3;;chr2:16080659..16080685,+!p1@MYCN!1.48!29.03!MYCN;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.74!GATA6;;chr19:33793430..33793447,-!p1@CEBPA!1.45!110.32!CEBPA;;chr8:102504651..102504683,+!p1@GRHL2!1.42!25.09!GRHL2;;chr13:28543285..28543314,-!p2@CDX2!1.41!24.97!CDX2;;chr11:34642612..34642646,+!p1@EHF!1.38!23.24!EHF;;chr1:42801540..42801562,-!p4@FOXJ3!1.38!22.88!FOXJ3;;chr2:171571827..171571853,+!p1@SP5!1.37!22.26!SP5;;chr13:28543388..28543406,-!p3@CDX2!1.34!21.03!CDX2;;chr1:209979467..209979494,-!p1@IRF6!1.33!23.00!IRF6;;chr17:45928521..45928539,-!p1@SP6!1.32!19.80!SP6;;chr15:96869511..96869525,+!p16@NR2F2!1.31!21.65!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.83!PROX1;;chrX:131547625..131547644,-!p4@MBNL3!1.28!17.96!MBNL3;;chr16:85932760..85932775,+!p1@IRF8!1.27!17.59!IRF8;;chr5:2751762..2751784,-!p1@IRX2!1.22!15.62!IRX2;;chr6:126221034..126221056,+!p13@NCOA7!1.22!15.62!NCOA7;;chr13:73633131..73633149,+!p1@KLF5!1.21!159.02!KLF5;;chr18:19749386..19749404,+!p2@GATA6!1.20!21.28!GATA6;;chr20:22564895..22564910,-!p1@FOXA2!1.16!13.53!FOXA2;;chr17:53342311..53342400,+!p1@HLF!1.15!15.00!HLF;;chr13:28543253..28543276,-!p5@CDX2!1.14!12.91!CDX2;;chr7:27205136..27205164,-!p1@HOXA9!1.14!12.79!HOXA9;;chr11:16419037..16419064,-!p3@SOX6!1.14!12.67!SOX6;;chr11:2291814..2291825,-!p2@ASCL2!1.12!12.18!ASCL2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.12!12.18!HOXC5;;chr5:124084493..124084524,-!p2@ZNF608!1.11!26.44!ZNF608;;chr19:926055..926068,+!p2@ARID3A!1.09!24.97!ARID3A;;chr8:76319876..76319926,+!p1@HNF4G!1.03!9.59!HNF4G;;chr9:138591319..138591340,-!p1@SOHLH1!1.02!9.47!SOHLH1;;chr2:25475120..25475176,-!p2@DNMT3A!0.99!12.05!DNMT3A;;chr12:103351444..103351461,+!p1@ASCL1!0.99!8.86!ASCL1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.41!PITX1;;chr3:71355163..71355209,-!p5@FOXP1!0.98!11.93!FOXP1;;chr7:27196267..27196311,-!p1@HOXA7!0.98!8.49!HOXA7;;chr19:926001..926046,+!p1@ARID3A!0.97!29.64!ARID3A;;chr12:121416455..121416479,+!p2@HNF1A!0.97!8.36!HNF1A;;chr20:50159198..50159299,-!p1@NFATC2!0.96!12.18!NFATC2;;chr11:65554528..65554546,+!p1@OVOL1!0.96!8.12!OVOL1;;chr10:97889464..97889494,+!p3@ZNF518A!0.95!15.13!ZNF518A;;chr10:8095593..8095625,+!p3@GATA3!0.95!9.47!GATA3;;chr19:46367576..46367592,+!p1@FOXA3!0.95!7.87!FOXA3;;chr19:58326246..58326262,-!p2@ZNF552!0.94!18.57!ZNF552;;chr17:36105042..36105060,-!p1@HNF1B!0.94!7.63!HNF1B;;chr17:41623692..41623715,-!p1@ETV4!0.93!33.08!ETV4;;chr6:126240380..126240430,+!p2@NCOA7!0.93!20.17!NCOA7;;chr13:28543316..28543329,-!p4@CDX2!0.93!7.50!CDX2;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.50!OTX1;;chr3:24536253..24536328,-!p1@THRB!0.92!14.02!THRB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.44!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.91!20.79!EPAS1;;chr8:71316428..71316459,-!p2@NCOA2!0.91!12.18!NCOA2;;chr20:6748325..6748352,+!p1@BMP2!0.91!10.58!BMP2;;chr17:46687959..46688007,-!p2@HOXB7!0.91!10.09!HOXB7;;chr5:76383133..76383186,-!p2@ZBED3!0.90!14.76!ZBED3;;chr5:2751785..2751808,-!p2@IRX2!0.90!7.01!IRX2;;chr1:199996831..199996843,+!p4@NR5A2!0.89!6.76!NR5A2;;chr20:50418128..50418147,-!p2@SALL4!0.88!6.64!SALL4;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.64!YBX2;;chr18:19749504..19749515,+!p5@GATA6!0.88!6.64!GATA6;;chr3:24536231..24536249,-!p4@THRB!0.88!6.52!THRB;;chr13:79177703..79177729,-!p2@POU4F1!0.88!6.52!POU4F1;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.52!MNX1;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.60!NCOA4;;chr10:48355030..48355090,+!p1@ZNF488!0.86!8.12!ZNF488;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.19!GATA6;;chr11:65554563..65554576,+!p2@OVOL1!0.85!6.03!OVOL1;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.78!PITX1;;chr8:71316403..71316427,-!p6@NCOA2!0.82!6.89!NCOA2;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.27!PPARG;;chrX:84498989..84499003,+!p1@ZNF711!0.80!7.50!ZNF711;;chr6:126240356..126240379,+!p7@NCOA7!0.80!6.64!NCOA7;;chr16:52581025..52581072,-!p1@TOX3!0.80!5.29!TOX3;;chr11:34642656..34642667,+!p2@EHF!0.80!5.29!EHF;;chr6:21597765..21597779,+!p2@SOX4!0.79!45.87!SOX4;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.6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1:24646002..24646013,+!p3@GRHL3!0.21!0.61!GRHL3;;chr1:2985726..2985752,+!p2@PRDM16!0.21!0.61!PRDM16;;chr1:47697539..47697573,-!p3@TAL1!0.21!0.61!TAL1;;chr1:50889103..50889145,-!p1@DMRTA2!0.21!0.61!DMRTA2;;chr20:56195474..56195506,-!p1@ZBP1!0.21!0.61!ZBP1;;chr19:53606636..53606692,-!p1@ZNF160!0.20!25.58!ZNF160;;chr19:42580274..42580375,+!p1@ZNF574!0.20!15.74!ZNF574;;chr7:77428149..77428220,+!p1@PHTF2!0.20!13.90!PHTF2;;chr10:105110831..105110885,-!p1@PCGF6!0.20!13.28!PCGF6;;chr10:21823128..21823216,+!p1@MLLT10!0.20!12.30!MLLT10;;chr3:141868293..141868355,-!p2@TFDP2!0.20!11.81!TFDP2;;chr2:174828892..174828972,-!p2@SP3!0.20!9.72!SP3;;chr17:80477643..80477678,+!p2@FOXK2!0.20!8.36!FOXK2;;chr5:139493665..139493718,+!p2@PURA!0.20!7.75!PURA;;chr17:5015129..5015187,-!p1@ZNF232!0.20!7.01!ZNF232;;chr19:44488330..44488379,+!p1@ZNF155!0.20!6.27!ZNF155;;chr19:9785724..9785740,-!p2@ZNF562!0.20!4.92!ZNF562;;chr21:27107465..27107557,+!p3@GABPA!0.20!4.43!GABPA;;chr5:139493727..139493766,+!p4@PURA!0.20!3.44!PURA;;chr12:57919293..57919311,+!p3@MBD6!0.20!3.07!MBD6;;chr11:12696002..12696022,+!p2@TEAD1!0.20!2.71!TEAD1;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!0.20!2.46!TCF20;;chr15:90895471..90895543,+!p1@ZNF774!0.20!2.46!ZNF774;;chr4:121843985..121844024,-!p2@PRDM5!0.20!2.34!PRDM5;;chr20:48807456..48807475,+!p3@CEBPB!0.20!1.97!CEBPB;;chr2:46524878..46524891,+!p3@EPAS1!0.20!1.72!EPAS1;;chr5:139494712..139494759,+!p5@PURA!0.20!1.60!PURA;;chr21:34144157..34144175,-!p3@GCFC1!0.20!1.48!GCFC1;;chr12:50479101..50479108,+!p3@SMARCD1!0.20!1.48!SMARCD1;;chr14:64970662..64970688,+!p8@ZBTB1!0.20!0.98!ZBTB1;;chr16:69600209..69600234,+!p4@NFAT5!0.20!0.98!NFAT5;;chr16:73081974..73082002,-!p7@ZFHX3!0.20!0.86!ZFHX3;;chr2:75938128..75938135,-!p3@GCFC2!0.20!0.86!GCFC2;;chr12:115122005..115122016,-!p3@TBX3!0.20!0.86!TBX3;;chr2:191878874..191878938,-!p1@STAT1!0.19!75.15!STAT1;;chr20:49547910..49547988,-!p1@ADNP!0.19!52.15!ADNP;;chr19:9695169..9695188,-!p1@ZNF121!0.19!24.35!ZNF121;;chr14:68283291..68283323,-!p1@ZFYVE26!0.19!22.75!ZFYVE26;;chr14:45722360..45722415,-!p1@MIS18BP1!0.19!21.28!MIS18BP1;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.19!19.56!LCOR;;chr7:139762641..139762768,-!p1@PARP12!0.19!18.57!PARP12;;chr10:77161504..77161530,-!p1@ZNF503!0.19!17.96!ZNF503;;chr9:125675576..125675612,-!p1@ZBTB6!0.19!17.10!ZBTB6;;chr4:38665769..38665801,+!p2@KLF3!0.19!11.93!KLF3;;chr19:57999101..57999158,+!p1@ZNF419!0.19!8.73!ZNF419;;chr19:47617013..47617069,-!p2@ZC3H4!0.19!7.87!ZC3H4;;chr11:123612319..123612395,-!p1@ZNF202!0.19!7.26!ZNF202;;chr16:30406721..30406820,+!p1@ZNF48!0.19!7.01!ZNF48;;chr3:48282587..48282603,+!p1@ZNF589!0.19!5.53!ZNF589;;chr1:935467..935484,-!p1@HES4!0.19!5.41!HES4;;chr19:44439387..44439419,-!p2@ZNF45!0.19!4.43!ZNF45;;chr19:58071201..58071238,-!p1@ZNF550!0.19!4.18!ZNF550;;chr19:58838369..58838439,+!p1@ZSCAN22!0.19!3.81!ZSCAN22;;chr4:4291837..4291859,-!p2@LYAR!0.19!3.81!LYAR;;chr14:89883412..89883478,-!p3@FOXN3!0.19!3.69!FOXN3;;chrX:129402768..129402796,-!p2@ZNF280C!0.19!3.57!ZNF280C;;chr19:44645731..44645786,+!p2@ZNF226,p2@ZNF234!0.19!3.57!ZNF234;;chr22:42229210..42229229,+!p3@SREBF2!0.19!2.46!SREBF2;;chr19:36980455..36980469,-!p2@ZNF566!0.19!2.21!ZNF566;;chr16:30596963..30596999,-!p3@ZNF785!0.19!1.97!ZNF785;;chr11:63684602..63684664,-!p1@RCOR2!0.19!1.97!RCOR2;;chr19:11708311..11708332,+!p2@ZNF627!0.19!1.84!ZNF627;;chr20:52210368..52210384,-!p1@ZNF217!0.19!1.84!ZNF217;;chr14:61191049..61191080,-!p2@SIX4!0.19!1.60!SIX4;;chr10:22292591..22292606,-!p2@DNAJC1!0.19!1.48!DNAJC1;;chr19:44598560..44598576,+!p3@ZNF224!0.19!1.48!ZNF224;;chr19:47922750..47922795,-!p1@MEIS3!0.19!1.48!MEIS3;;chr16:1429674..1429703,-!p3@UNKL!0.19!1.48!UNKL;;chr5:178322893..178322931,+!p1@ZFP2!0.19!1.23!ZFP2;;chr3:44754176..44754196,+!p2@ZNF502!0.19!1.11!ZNF502;;chr10:98592751..98592765,+!p5@LCOR!0.19!0.98!LCOR;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg38.nobarcode.ctss.bed.gz
|id=FF:11246-116E4
|id=FF:11246-116E4
|is_a=EFO:0002091;;FF:0000080
|is_a=EFO:0002091;;FF:0000080
|is_obsolete=
|is_obsolete=
|library_id=CNhs10875
|library_id_phase_based=2:CNhs10875
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11246
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GCCAAT.11246
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11246
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GCCAAT.11246
|name=Intestinal epithelial cells (polarized), donor1
|name=Intestinal epithelial cells (polarized), donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 66:
|profile_cagescan=NCig10043,,,
|profile_cagescan=NCig10043,,,
|profile_hcage=CNhs10875,LSID703,release008,COMPLETED
|profile_hcage=CNhs10875,LSID703,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
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|rna_box=116
|rna_catalog_number=N/A
|rna_catalog_number=N/A
Line 57: Line 81:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=116E4
|rna_tube_id=1.16E+06
|rna_weight_ug=62.7
|rna_weight_ug=62.7
|rnaseq_library_id=SRhi10002.GCCAAT
|sample_age=19
|sample_age=19
|sample_category=primary cells
|sample_cell_catalog=CS-ABI-519
|sample_cell_catalog=CS-ABI-519
|sample_cell_line=
|sample_cell_line=
Line 81: Line 107:
|top_motifs=HNF1A:4.88835935984;HNF4A_NR2F1,2:4.82229222128;SNAI1..3:2.49493833079;FOXA2:2.01438286729;ZEB1:1.93758529799;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.81648778893;FOX{F1,F2,J1}:1.77574581186;ESRRA:1.50437014925;NFY{A,B,C}:1.4425449436;MYOD1:1.32429836437;LEF1_TCF7_TCF7L1,2:1.26674692883;bHLH_family:1.21711568017;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16189307656;ONECUT1,2:1.13270469854;LHX3,4:1.11192178367;NKX3-2:1.09313597131;RBPJ:1.08753157445;T:1.08696681104;ELK1,4_GABP{A,B1}:0.995427630601;PDX1:0.995035757386;HOX{A6,A7,B6,B7}:0.989369161307;SP1:0.968497638825;FOX{D1,D2}:0.959060894232;NKX2-3_NKX2-5:0.938560200754;GATA6:0.91579646744;ADNP_IRX_SIX_ZHX:0.746686131239;NR6A1:0.712936507265;ESR1:0.70039178976;E2F1..5:0.688992762231;TBP:0.662550827987;TEAD1:0.634374599354;PBX1:0.624489488794;LMO2:0.615917218362;SREBF1,2:0.597790283863;NRF1:0.565119829652;STAT1,3:0.563955279919;TBX4,5:0.534411838879;GFI1:0.531605952582;XCPE1{core}:0.468747918968;SOX{8,9,10}:0.45947197621;FOXM1:0.450336093804;EVI1:0.44327066253;HLF:0.425979311145;FOXN1:0.408556355915;RORA:0.38192068004;SOX17:0.330495766258;EN1,2:0.317396060913;ZNF143:0.297724739441;FOXQ1:0.278326566653;ATF6:0.258121124828;MAZ:0.238267062207;VSX1,2:0.221873905656;FOXD3:0.217318252268;YY1:0.199552683861;CEBPA,B_DDIT3:0.187589307946;HOX{A5,B5}:0.159374261374;ALX4:0.159174783369;HAND1,2:0.131312423694;ZNF148:0.128690778816;ATF4:0.117795228692;TOPORS:0.0760219092834;PAX5:0.0711382093775;HOXA9_MEIS1:0.0654949243073;CRX:0.0435057018617;PAX3,7:0.0412808183953;MED-1{core}:0.0148444027062;FOXO1,3,4:0.000322065797099;MYB:-0.00595350793319;PATZ1:-0.0109685397265;IKZF2:-0.0306958133976;SOX5:-0.0332297133846;PITX1..3:-0.0342285600721;TFDP1:-0.0631133240045;ZFP161:-0.0873633719946;STAT5{A,B}:-0.0898417248617;IRF7:-0.0950185154114;AIRE:-0.0952850543045;ALX1:-0.0960136679145;HIC1:-0.0974870138491;ATF2:-0.107322968004;MTF1:-0.110963780513;STAT2,4,6:-0.141582453815;NFIL3:-0.180129384145;FOSL2:-0.184163149265;NR5A1,2:-0.193926218517;TFCP2:-0.19501014714;TEF:-0.195783729026;RXR{A,B,G}:-0.212693998681;IRF1,2:-0.22026220469;SOX2:-0.223328370145;MTE{core}:-0.225528387267;FOS_FOS{B,L1}_JUN{B,D}:-0.243432139519;RXRA_VDR{dimer}:-0.244751535862;NFKB1_REL_RELA:-0.256583797898;IKZF1:-0.263352514604;CUX2:-0.27234022627;POU6F1:-0.273106184269;ELF1,2,4:-0.279384281996;DBP:-0.280589084085;ARID5B:-0.284691867427;PAX2:-0.292041838231;NFE2:-0.296140337224;CDX1,2,4:-0.305485795864;TFAP2{A,C}:-0.31252287933;UFEwm:-0.328430686003;FOXP1:-0.331951371304;EBF1:-0.349266337614;POU2F1..3:-0.373324364634;ATF5_CREB3:-0.374523641091;ZNF384:-0.40442194314;KLF4:-0.411036115653;TP53:-0.413087474747;HOX{A4,D4}:-0.418383310486;NHLH1,2:-0.440607748022;BACH2:-0.444228415276;TFAP2B:-0.456253647726;HSF1,2:-0.464057773747;RFX2..5_RFXANK_RFXAP:-0.471891803734;DMAP1_NCOR{1,2}_SMARC:-0.495511762921;ZBTB6:-0.495549119333;MYBL2:-0.511091649711;BREu{core}:-0.531752048311;GTF2A1,2:-0.547054409687;TAL1_TCF{3,4,12}:-0.563682568823;NFE2L2:-0.564983758624;PRRX1,2:-0.565814479886;RREB1:-0.56634294178;TLX2:-0.569884911644;PAX4:-0.573164806885;JUN:-0.57476157043;NFIX:-0.58880342758;REST:-0.593035565494;OCT4_SOX2{dimer}:-0.603360651925;PAX1,9:-0.6129735823;FOXP3:-0.629843412109;XBP1:-0.671473045924;MYFfamily:-0.680057926392;POU5F1:-0.693201824466;MEF2{A,B,C,D}:-0.697622480319;SPI1:-0.698179655936;SPIB:-0.724554924149;NR3C1:-0.735944093491;FOX{I1,J2}:-0.744405270892;ZBTB16:-0.747670935335;MAFB:-0.778524060925;PPARG:-0.78058614556;GTF2I:-0.783977630456;TLX1..3_NFIC{dimer}:-0.799623249846;POU1F1:-0.817288033352;HES1:-0.823803083537;EP300:-0.83732366666;AHR_ARNT_ARNT2:-0.838703115491;ETS1,2:-0.84070351625;CDC5L:-0.842277179944;NANOG:-0.845916723349;POU3F1..4:-0.863022620981;PRDM1:-0.864686730331;MZF1:-0.870462039767;HMGA1,2:-0.887128989717;RUNX1..3:-0.897941518752;ZIC1..3:-0.910472299098;ZNF238:-0.915564131281;GZF1:-0.915848079457;SPZ1:-0.916393870183;FOXL1:-0.918521104483;GFI1B:-0.923027412555;EGR1..3:-0.92358664601;RFX1:-0.928942161069;PAX8:-0.938757429378;TFAP4:-0.95721880937;SRF:-0.992502592444;AR:-1.02137562701;NR1H4:-1.11545415516;ZNF423:-1.11902211212;NANOG{mouse}:-1.13328289362;CREB1:-1.15554703209;GLI1..3:-1.21531694014;NKX6-1,2:-1.23295375558;TGIF1:-1.23743705408;BPTF:-1.27970145612;PAX6:-1.28890470862;NKX2-1,4:-1.29571152893;GCM1,2:-1.31374556469;HBP1_HMGB_SSRP1_UBTF:-1.33792311686;HIF1A:-1.3497167218;NKX3-1:-1.44722800322;HMX1:-1.55182415421;GATA4:-1.63064798004;NKX2-2,8:-1.64070220919;SMAD1..7,9:-1.67685450194;NFATC1..3:-1.70707269326;NFE2L1:-1.73282466025
|top_motifs=HNF1A:4.88835935984;HNF4A_NR2F1,2:4.82229222128;SNAI1..3:2.49493833079;FOXA2:2.01438286729;ZEB1:1.93758529799;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.81648778893;FOX{F1,F2,J1}:1.77574581186;ESRRA:1.50437014925;NFY{A,B,C}:1.4425449436;MYOD1:1.32429836437;LEF1_TCF7_TCF7L1,2:1.26674692883;bHLH_family:1.21711568017;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16189307656;ONECUT1,2:1.13270469854;LHX3,4:1.11192178367;NKX3-2:1.09313597131;RBPJ:1.08753157445;T:1.08696681104;ELK1,4_GABP{A,B1}:0.995427630601;PDX1:0.995035757386;HOX{A6,A7,B6,B7}:0.989369161307;SP1:0.968497638825;FOX{D1,D2}:0.959060894232;NKX2-3_NKX2-5:0.938560200754;GATA6:0.91579646744;ADNP_IRX_SIX_ZHX:0.746686131239;NR6A1:0.712936507265;ESR1:0.70039178976;E2F1..5:0.688992762231;TBP:0.662550827987;TEAD1:0.634374599354;PBX1:0.624489488794;LMO2:0.615917218362;SREBF1,2:0.597790283863;NRF1:0.565119829652;STAT1,3:0.563955279919;TBX4,5:0.534411838879;GFI1:0.531605952582;XCPE1{core}:0.468747918968;SOX{8,9,10}:0.45947197621;FOXM1:0.450336093804;EVI1:0.44327066253;HLF:0.425979311145;FOXN1:0.408556355915;RORA:0.38192068004;SOX17:0.330495766258;EN1,2:0.317396060913;ZNF143:0.297724739441;FOXQ1:0.278326566653;ATF6:0.258121124828;MAZ:0.238267062207;VSX1,2:0.221873905656;FOXD3:0.217318252268;YY1:0.199552683861;CEBPA,B_DDIT3:0.187589307946;HOX{A5,B5}:0.159374261374;ALX4:0.159174783369;HAND1,2:0.131312423694;ZNF148:0.128690778816;ATF4:0.117795228692;TOPORS:0.0760219092834;PAX5:0.0711382093775;HOXA9_MEIS1:0.0654949243073;CRX:0.0435057018617;PAX3,7:0.0412808183953;MED-1{core}:0.0148444027062;FOXO1,3,4:0.000322065797099;MYB:-0.00595350793319;PATZ1:-0.0109685397265;IKZF2:-0.0306958133976;SOX5:-0.0332297133846;PITX1..3:-0.0342285600721;TFDP1:-0.0631133240045;ZFP161:-0.0873633719946;STAT5{A,B}:-0.0898417248617;IRF7:-0.0950185154114;AIRE:-0.0952850543045;ALX1:-0.0960136679145;HIC1:-0.0974870138491;ATF2:-0.107322968004;MTF1:-0.110963780513;STAT2,4,6:-0.141582453815;NFIL3:-0.180129384145;FOSL2:-0.184163149265;NR5A1,2:-0.193926218517;TFCP2:-0.19501014714;TEF:-0.195783729026;RXR{A,B,G}:-0.212693998681;IRF1,2:-0.22026220469;SOX2:-0.223328370145;MTE{core}:-0.225528387267;FOS_FOS{B,L1}_JUN{B,D}:-0.243432139519;RXRA_VDR{dimer}:-0.244751535862;NFKB1_REL_RELA:-0.256583797898;IKZF1:-0.263352514604;CUX2:-0.27234022627;POU6F1:-0.273106184269;ELF1,2,4:-0.279384281996;DBP:-0.280589084085;ARID5B:-0.284691867427;PAX2:-0.292041838231;NFE2:-0.296140337224;CDX1,2,4:-0.305485795864;TFAP2{A,C}:-0.31252287933;UFEwm:-0.328430686003;FOXP1:-0.331951371304;EBF1:-0.349266337614;POU2F1..3:-0.373324364634;ATF5_CREB3:-0.374523641091;ZNF384:-0.40442194314;KLF4:-0.411036115653;TP53:-0.413087474747;HOX{A4,D4}:-0.418383310486;NHLH1,2:-0.440607748022;BACH2:-0.444228415276;TFAP2B:-0.456253647726;HSF1,2:-0.464057773747;RFX2..5_RFXANK_RFXAP:-0.471891803734;DMAP1_NCOR{1,2}_SMARC:-0.495511762921;ZBTB6:-0.495549119333;MYBL2:-0.511091649711;BREu{core}:-0.531752048311;GTF2A1,2:-0.547054409687;TAL1_TCF{3,4,12}:-0.563682568823;NFE2L2:-0.564983758624;PRRX1,2:-0.565814479886;RREB1:-0.56634294178;TLX2:-0.569884911644;PAX4:-0.573164806885;JUN:-0.57476157043;NFIX:-0.58880342758;REST:-0.593035565494;OCT4_SOX2{dimer}:-0.603360651925;PAX1,9:-0.6129735823;FOXP3:-0.629843412109;XBP1:-0.671473045924;MYFfamily:-0.680057926392;POU5F1:-0.693201824466;MEF2{A,B,C,D}:-0.697622480319;SPI1:-0.698179655936;SPIB:-0.724554924149;NR3C1:-0.735944093491;FOX{I1,J2}:-0.744405270892;ZBTB16:-0.747670935335;MAFB:-0.778524060925;PPARG:-0.78058614556;GTF2I:-0.783977630456;TLX1..3_NFIC{dimer}:-0.799623249846;POU1F1:-0.817288033352;HES1:-0.823803083537;EP300:-0.83732366666;AHR_ARNT_ARNT2:-0.838703115491;ETS1,2:-0.84070351625;CDC5L:-0.842277179944;NANOG:-0.845916723349;POU3F1..4:-0.863022620981;PRDM1:-0.864686730331;MZF1:-0.870462039767;HMGA1,2:-0.887128989717;RUNX1..3:-0.897941518752;ZIC1..3:-0.910472299098;ZNF238:-0.915564131281;GZF1:-0.915848079457;SPZ1:-0.916393870183;FOXL1:-0.918521104483;GFI1B:-0.923027412555;EGR1..3:-0.92358664601;RFX1:-0.928942161069;PAX8:-0.938757429378;TFAP4:-0.95721880937;SRF:-0.992502592444;AR:-1.02137562701;NR1H4:-1.11545415516;ZNF423:-1.11902211212;NANOG{mouse}:-1.13328289362;CREB1:-1.15554703209;GLI1..3:-1.21531694014;NKX6-1,2:-1.23295375558;TGIF1:-1.23743705408;BPTF:-1.27970145612;PAX6:-1.28890470862;NKX2-1,4:-1.29571152893;GCM1,2:-1.31374556469;HBP1_HMGB_SSRP1_UBTF:-1.33792311686;HIF1A:-1.3497167218;NKX3-1:-1.44722800322;HMX1:-1.55182415421;GATA4:-1.63064798004;NKX2-2,8:-1.64070220919;SMAD1..7,9:-1.67685450194;NFATC1..3:-1.70707269326;NFE2L1:-1.73282466025
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11246-116E4;search_select_hide=table117:FF:11246-116E4
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Intestinal epithelial cells (polarized), donor1
Species:Human (Homo sapiens)
Library ID:CNhs10875
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesmall intestine
dev stage19 years old adult
sexunknown
age19
cell typeepithelial cell, intestinal
cell lineNA
companyCell systems
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004786
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10875 CAGE DRX008310 DRR009182
Accession ID Hg19

Library idBAMCTSS
CNhs10875 DRZ000607 DRZ001992
Accession ID Hg38

Library idBAMCTSS
CNhs10875 DRZ011957 DRZ013342
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10043downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004786
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GCCAAT sRNA-Seq DRX036993 DRR041359
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GCCAAT DRZ007001


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.143
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0.0504
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.136
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.936
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0153
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.235
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0504
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.198
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.174
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.14
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.24
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0.24
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0.794
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.14
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0.0504
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0.0955
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0504
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.335
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0.0504
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.136
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10875

Jaspar motifP-value
MA0002.20.00736
MA0003.10.433
MA0004.10.0347
MA0006.10.133
MA0007.10.65
MA0009.10.0624
MA0014.10.0132
MA0017.16.56511e-29
MA0018.20.284
MA0019.10.528
MA0024.10.00115
MA0025.10.0367
MA0027.10.655
MA0028.18.73073e-4
MA0029.10.00677
MA0030.19.20127e-4
MA0031.14.02952e-4
MA0035.21.12112e-5
MA0038.10.00367
MA0039.20.00162
MA0040.10.295
MA0041.10.495
MA0042.10.713
MA0043.10.724
MA0046.12.19185e-110
MA0047.21.37821e-10
MA0048.10.804
MA0050.10.776
MA0051.10.212
MA0052.10.0222
MA0055.10.00487
MA0057.10.912
MA0058.10.00233
MA0059.10.188
MA0060.18.29151e-13
MA0061.12.70535e-4
MA0062.20.0288
MA0065.28.47848e-8
MA0066.10.71
MA0067.10.0115
MA0068.10.81
MA0069.10.731
MA0070.10.239
MA0071.10.789
MA0072.10.689
MA0073.10.527
MA0074.10.41
MA0076.10.00258
MA0077.10.445
MA0078.10.444
MA0079.20.607
MA0080.23.72118e-8
MA0081.10.0034
MA0083.10.0501
MA0084.10.892
MA0087.10.598
MA0088.10.941
MA0090.10.00336
MA0091.10.0706
MA0092.10.162
MA0093.10.0177
MA0099.26.78306e-4
MA0100.10.422
MA0101.10.0106
MA0102.20.802
MA0103.11.07781e-9
MA0104.20.122
MA0105.10.00337
MA0106.10.331
MA0107.10.00137
MA0108.20.104
MA0111.10.738
MA0112.20.538
MA0113.10.954
MA0114.13.16727e-43
MA0115.11.07175e-8
MA0116.10.0353
MA0117.10.733
MA0119.10.0793
MA0122.10.718
MA0124.10.317
MA0125.10.0103
MA0131.10.422
MA0135.10.0275
MA0136.15.02398e-5
MA0137.20.65
MA0138.20.701
MA0139.10.0453
MA0140.10.00212
MA0141.10.00523
MA0142.10.731
MA0143.10.831
MA0144.10.803
MA0145.10.604
MA0146.10.0725
MA0147.10.511
MA0148.14.33459e-10
MA0149.10.484
MA0150.10.00173
MA0152.10.857
MA0153.14.95883e-72
MA0154.10.466
MA0155.10.956
MA0156.10.0036
MA0157.10.185
MA0159.10.0805
MA0160.10.0458
MA0162.10.331
MA0163.10.927
MA0164.10.0631
MA0258.10.802
MA0259.10.715



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10875

Novel motifP-value
10.951
100.661
1000.172
1010.626
1020.2
1030.955
1040.615
1050.473
1060.254
1070.625
1080.827
1090.0629
110.656
1100.954
1110.65
1120.334
1130.00584
1140.427
1150.679
1160.226
1170.276
1180.207
1190.187
120.927
1200.187
1210.697
1220.326
1230.0661
1240.9
1250.0167
1260.143
1270.201
1280.0168
1290.485
130.0015
1300.782
1310.0686
1320.822
1330.238
1340.0468
1350.0538
1360.0115
1370.0122
1380.091
1390.0274
140.445
1400.809
1410.931
1420.793
1430.00233
1440.337
1450.407
1460.913
1470.762
1480.911
1490.91
150.647
1500.397
1510.633
1520.261
1530.197
1540.0236
1550.109
1560.224
1570.582
1580.973
1590.623
160.943
1600.617
1610.513
1620.956
1630.659
1640.897
1650.985
1660.193
1670.896
1680.94
1690.215
170.33
180.0294
190.976
20.977
200.512
210.277
220.789
230.342
240.577
250.984
260.436
270.956
280.965
290.233
30.506
300.392
310.988
320.149
330.55
340.638
350.412
360.536
370.88
380.463
390.509
40.561
400.0139
410.0166
420.647
430.544
440.181
450.107
460.802
470.568
480.627
490.398
50.408
500.441
510.904
520.991
530.583
540.622
550.509
560.815
570.559
580.745
590.562
60.279
600.683
610.208
620.386
630.839
640.959
650.663
660.0608
670.104
680.0548
690.446
70.0779
700.63
710.845
720.693
730.0862
740.0243
750.212
760.948
770.574
788.95925e-5
790.193
80.596
800.939
810.106
820.0643
830.717
840.227
850.183
860.527
870.204
880.676
890.476
90.184
900.958
910.0147
920.304
930.951
940.0488
950.181
960.25
970.583
980.961
990.216



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10875


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000080 (human intestinal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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