FF:11251-116E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004992 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004992 | ||
|accession_numbers=CAGE;DRX008315;DRR009187;DRZ000612;DRZ001997;DRZ011962;DRZ013347 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037036;DRR041402;DRZ007044 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000033,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000237,CL:0000255,CL:0002076,CL:0002336,CL:0002251,CL:0002261,CL:0002170 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000083 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11251-116E9 | |id=FF:11251-116E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000083 | ||
|is_obsolete= | |||
|library_id=CNhs10879 | |||
|library_id_phase_based=2:CNhs10879 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11251 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GCCAAT.11251 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11251 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GCCAAT.11251 | |||
|name=Keratinocyte - oral, donor1 | |name=Keratinocyte - oral, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10879,LSID703,release008,COMPLETED | |profile_hcage=CNhs10879,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.200698913557247,0,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0.455114328983385,0,0,0,0,-0.153323010348428,0,0,0,0.417307999880991,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.378184640420023,0,-0.209459762525499,0,0,0,0.425956573949931,0,0,0,0,0.0126765661932864,0,0,0,0,0,0,0.13683270229687,-0.0969923612426051,0,0,-0.0588870239600551,0,0,0,0,0,0,0,0,0.0384566032530418,0,0,0,0,0.0384566032530418,0,0,0,-0.0219656744281139,0,0,0,0,0,0,-0.133420088332832,0,0,0,0.0743610100782786,0.0492494190584886,0,0,0,0,-0.0242521766254648,-0.138477200800895,0,0,0,0.0384566032530418,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0431480429368578,0.106451101971206,0,0,-0.17035902703962,-0.413332675228769,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=Sciencell(2615) | |rna_catalog_number=Sciencell(2615) | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.16E+11 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GCCAAT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.57980160216235e-267!GO:0043226;organelle;2.59623379166687e-209!GO:0043229;intracellular organelle;9.795691439257e-209!GO:0005737;cytoplasm;1.56437778214952e-205!GO:0043231;intracellular membrane-bound organelle;3.07312132010372e-195!GO:0043227;membrane-bound organelle;5.11235543529791e-195!GO:0044422;organelle part;8.86816526058466e-147!GO:0044446;intracellular organelle part;2.4487534010813e-145!GO:0044444;cytoplasmic part;2.30723656740411e-131!GO:0032991;macromolecular complex;2.32326906220069e-102!GO:0044238;primary metabolic process;3.91469536401304e-94!GO:0044237;cellular metabolic process;7.39299103691264e-93!GO:0030529;ribonucleoprotein complex;3.02385526263743e-89!GO:0043170;macromolecule metabolic process;5.06178498701997e-85!GO:0005634;nucleus;9.61482603161656e-81!GO:0005515;protein binding;2.19484494853583e-78!GO:0043233;organelle lumen;1.00103022609475e-76!GO:0031974;membrane-enclosed lumen;1.00103022609475e-76!GO:0044428;nuclear part;1.72270282558268e-75!GO:0003723;RNA binding;5.23163068619289e-72!GO:0005739;mitochondrion;5.23065770330198e-71!GO:0006412;translation;3.17621512193191e-55!GO:0005840;ribosome;4.15897233864022e-55!GO:0019538;protein metabolic process;1.16977275242012e-51!GO:0043234;protein complex;4.0318545297499e-51!GO:0006396;RNA processing;4.0318545297499e-51!GO:0016043;cellular component organization and biogenesis;6.3802346587386e-50!GO:0043283;biopolymer metabolic process;3.71436214852936e-49!GO:0003735;structural constituent of ribosome;5.95488897243006e-48!GO:0044429;mitochondrial part;7.47242834935073e-47!GO:0010467;gene expression;2.43667936457122e-46!GO:0015031;protein transport;2.95793997504261e-46!GO:0033036;macromolecule localization;9.76833417102651e-46!GO:0031090;organelle membrane;1.14794284146146e-45!GO:0031981;nuclear lumen;2.91690037533475e-45!GO:0009058;biosynthetic process;3.02191197559719e-45!GO:0044267;cellular protein metabolic process;5.87504287317042e-45!GO:0043228;non-membrane-bound organelle;9.64466070693376e-45!GO:0043232;intracellular non-membrane-bound organelle;9.64466070693376e-45!GO:0044260;cellular macromolecule metabolic process;1.01702944645759e-44!GO:0044249;cellular biosynthetic process;4.86286234416083e-43!GO:0045184;establishment of protein localization;1.4419086481233e-42!GO:0008104;protein localization;2.00776661252476e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.51506189119737e-42!GO:0005829;cytosol;3.34272498655475e-41!GO:0009059;macromolecule biosynthetic process;6.61505908756783e-41!GO:0031967;organelle envelope;3.61709373607128e-40!GO:0033279;ribosomal subunit;5.32601213957282e-40!GO:0031975;envelope;9.37325094128374e-40!GO:0016071;mRNA metabolic process;4.41252724055682e-39!GO:0065003;macromolecular complex assembly;7.39502094227911e-37!GO:0008380;RNA splicing;2.86365295110126e-36!GO:0046907;intracellular transport;2.43547024724474e-35!GO:0006996;organelle organization and biogenesis;2.49546543576285e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.18224590443029e-34!GO:0006397;mRNA processing;7.52602524720575e-34!GO:0022607;cellular component assembly;3.65909694336411e-33!GO:0006886;intracellular protein transport;2.76079693866482e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.43977759468481e-29!GO:0006259;DNA metabolic process;2.85501073647216e-29!GO:0005740;mitochondrial envelope;5.36789569933109e-28!GO:0005654;nucleoplasm;4.23355595262294e-27!GO:0005681;spliceosome;1.36300651157693e-26!GO:0031966;mitochondrial membrane;5.11794385041512e-26!GO:0019866;organelle inner membrane;7.12899800147304e-25!GO:0044445;cytosolic part;1.40162759865719e-24!GO:0007049;cell cycle;1.36405076115213e-23!GO:0005743;mitochondrial inner membrane;2.9514136331547e-23!GO:0003676;nucleic acid binding;3.29324453702267e-23!GO:0000166;nucleotide binding;5.34164260896895e-23!GO:0051649;establishment of cellular localization;1.07411581690219e-22!GO:0031980;mitochondrial lumen;1.11744263913873e-22!GO:0005759;mitochondrial matrix;1.11744263913873e-22!GO:0051641;cellular localization;1.2573113098812e-22!GO:0044451;nucleoplasm part;1.33927954245428e-21!GO:0016874;ligase activity;4.8660141478284e-21!GO:0016070;RNA metabolic process;1.05153744962231e-20!GO:0015934;large ribosomal subunit;1.60860887847537e-20!GO:0015935;small ribosomal subunit;1.89558717273903e-20!GO:0006119;oxidative phosphorylation;3.5591449961373e-20!GO:0016462;pyrophosphatase activity;5.80057788775517e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.21041406695927e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.06294913161767e-20!GO:0005730;nucleolus;8.38252877672742e-20!GO:0022618;protein-RNA complex assembly;1.61238247856043e-19!GO:0006457;protein folding;1.83426239741773e-19!GO:0048770;pigment granule;2.97945149059313e-19!GO:0042470;melanosome;2.97945149059313e-19!GO:0017111;nucleoside-triphosphatase activity;4.78754386506147e-19!GO:0012505;endomembrane system;5.35578413819788e-19!GO:0044455;mitochondrial membrane part;1.18033351890075e-18!GO:0006512;ubiquitin cycle;1.07049718645129e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.85306805827487e-17!GO:0006605;protein targeting;3.8771027760817e-17!GO:0022402;cell cycle process;4.03108421183217e-17!GO:0044265;cellular macromolecule catabolic process;5.87886668954387e-17!GO:0019941;modification-dependent protein catabolic process;7.45899613993574e-17!GO:0043632;modification-dependent macromolecule catabolic process;7.45899613993574e-17!GO:0005783;endoplasmic reticulum;7.78744267381518e-17!GO:0006511;ubiquitin-dependent protein catabolic process;9.07120682903622e-17!GO:0006974;response to DNA damage stimulus;1.06222636720103e-16!GO:0044257;cellular protein catabolic process;1.42337408162416e-16!GO:0043285;biopolymer catabolic process;2.35707890767631e-16!GO:0008134;transcription factor binding;4.96638668056069e-16!GO:0017076;purine nucleotide binding;7.39622914000272e-16!GO:0032553;ribonucleotide binding;7.77796804178469e-16!GO:0032555;purine ribonucleotide binding;7.77796804178469e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.17925397892221e-15!GO:0000278;mitotic cell cycle;1.5145585079163e-15!GO:0042254;ribosome biogenesis and assembly;1.84076701309829e-15!GO:0005761;mitochondrial ribosome;2.41651769175785e-15!GO:0000313;organellar ribosome;2.41651769175785e-15!GO:0008135;translation factor activity, nucleic acid binding;2.55070740582481e-15!GO:0005794;Golgi apparatus;3.71541296174708e-15!GO:0005746;mitochondrial respiratory chain;5.08795975652025e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.70905294687539e-15!GO:0009057;macromolecule catabolic process;6.396208661617e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.39918002269629e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.50099846838817e-14!GO:0044248;cellular catabolic process;1.74535105228457e-14!GO:0043412;biopolymer modification;2.36829391790279e-14!GO:0030163;protein catabolic process;2.51973863707798e-14!GO:0051186;cofactor metabolic process;4.56722418635702e-14!GO:0005694;chromosome;1.33568353506707e-13!GO:0012501;programmed cell death;1.34772194340491e-13!GO:0006281;DNA repair;1.54376379399996e-13!GO:0044432;endoplasmic reticulum part;1.76955096982277e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.47307409003819e-13!GO:0000375;RNA splicing, via transesterification reactions;2.47307409003819e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.47307409003819e-13!GO:0006915;apoptosis;2.79180014486628e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.91245505157944e-13!GO:0003954;NADH dehydrogenase activity;2.91245505157944e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.91245505157944e-13!GO:0051082;unfolded protein binding;4.18212101412106e-13!GO:0051276;chromosome organization and biogenesis;4.72218178369489e-13!GO:0048193;Golgi vesicle transport;5.07869430813309e-13!GO:0006464;protein modification process;8.10931412912856e-13!GO:0005635;nuclear envelope;1.08353439299261e-12!GO:0005524;ATP binding;1.19008497021482e-12!GO:0006461;protein complex assembly;1.7903169759398e-12!GO:0032559;adenyl ribonucleotide binding;2.1558325012651e-12!GO:0030554;adenyl nucleotide binding;2.68555988609236e-12!GO:0006413;translational initiation;3.08476904831211e-12!GO:0006913;nucleocytoplasmic transport;4.27463743022436e-12!GO:0009719;response to endogenous stimulus;4.38183050100956e-12!GO:0006732;coenzyme metabolic process;4.99413926794874e-12!GO:0008219;cell death;5.59971795045322e-12!GO:0016265;death;5.59971795045322e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.95649923126665e-12!GO:0006446;regulation of translational initiation;7.54263593621635e-12!GO:0043687;post-translational protein modification;7.87032113088035e-12!GO:0042775;organelle ATP synthesis coupled electron transport;8.51468475607239e-12!GO:0042773;ATP synthesis coupled electron transport;8.51468475607239e-12!GO:0044427;chromosomal part;1.04271570180842e-11!GO:0051169;nuclear transport;1.17946485280495e-11!GO:0003743;translation initiation factor activity;1.38380321109596e-11!GO:0022403;cell cycle phase;1.60555700457802e-11!GO:0016604;nuclear body;1.71084453171973e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.07735525314061e-11!GO:0045271;respiratory chain complex I;2.07735525314061e-11!GO:0005747;mitochondrial respiratory chain complex I;2.07735525314061e-11!GO:0031965;nuclear membrane;2.98395888710116e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;3.00892937591847e-11!GO:0016192;vesicle-mediated transport;3.17545546799771e-11!GO:0006260;DNA replication;4.30330939876276e-11!GO:0000074;regulation of progression through cell cycle;4.56517373053032e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.34561945745959e-11!GO:0008565;protein transporter activity;6.21772901687671e-11!GO:0051726;regulation of cell cycle;6.57614042509409e-11!GO:0044453;nuclear membrane part;6.60405922822886e-11!GO:0000087;M phase of mitotic cell cycle;7.63345199012682e-11!GO:0006399;tRNA metabolic process;1.12554025822029e-10!GO:0006323;DNA packaging;1.12554025822029e-10!GO:0007067;mitosis;1.30366917725779e-10!GO:0050794;regulation of cellular process;1.51863421377305e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.84114956084997e-10!GO:0006366;transcription from RNA polymerase II promoter;1.99751934854985e-10!GO:0017038;protein import;4.36066663766981e-10!GO:0006364;rRNA processing;4.40672092761504e-10!GO:0009055;electron carrier activity;4.52289913307462e-10!GO:0008639;small protein conjugating enzyme activity;5.93912079071291e-10!GO:0016072;rRNA metabolic process;6.76087311006037e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.04113591364433e-10!GO:0004386;helicase activity;9.78278267388506e-10!GO:0005789;endoplasmic reticulum membrane;9.91142289170478e-10!GO:0004842;ubiquitin-protein ligase activity;9.99880200385799e-10!GO:0048523;negative regulation of cellular process;1.07147177325144e-09!GO:0009259;ribonucleotide metabolic process;1.18845517475361e-09!GO:0051301;cell division;1.23584660339062e-09!GO:0005643;nuclear pore;1.71293625964467e-09!GO:0019787;small conjugating protein ligase activity;1.8049668021798e-09!GO:0003712;transcription cofactor activity;1.86266411123489e-09!GO:0006163;purine nucleotide metabolic process;2.54357123674791e-09!GO:0042623;ATPase activity, coupled;2.57222918827046e-09!GO:0016887;ATPase activity;2.95883095112234e-09!GO:0016607;nuclear speck;3.10308910065167e-09!GO:0043067;regulation of programmed cell death;4.09952868857409e-09!GO:0042981;regulation of apoptosis;4.86391311030991e-09!GO:0000279;M phase;6.81170373597509e-09!GO:0009060;aerobic respiration;7.00332732694008e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.01061864326928e-09!GO:0051246;regulation of protein metabolic process;7.24676048533943e-09!GO:0006164;purine nucleotide biosynthetic process;7.30353065162422e-09!GO:0005793;ER-Golgi intermediate compartment;7.32914755920366e-09!GO:0009260;ribonucleotide biosynthetic process;7.98934269855927e-09!GO:0009056;catabolic process;8.1592061440127e-09!GO:0003924;GTPase activity;8.64330979834068e-09!GO:0009150;purine ribonucleotide metabolic process;9.34455588356833e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.02383571746601e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.02383571746601e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.02383571746601e-08!GO:0043038;amino acid activation;1.19640836476629e-08!GO:0006418;tRNA aminoacylation for protein translation;1.19640836476629e-08!GO:0043039;tRNA aminoacylation;1.19640836476629e-08!GO:0045333;cellular respiration;1.53287586570905e-08!GO:0048475;coated membrane;1.54634371982815e-08!GO:0030117;membrane coat;1.54634371982815e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.59120886119708e-08!GO:0007005;mitochondrion organization and biogenesis;2.03404557047626e-08!GO:0016881;acid-amino acid ligase activity;2.31292891376438e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.59858039024935e-08!GO:0065002;intracellular protein transport across a membrane;3.15799899769505e-08!GO:0000785;chromatin;3.28424179538316e-08!GO:0048519;negative regulation of biological process;3.45475795225078e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.55210915493372e-08!GO:0065004;protein-DNA complex assembly;4.54359854221991e-08!GO:0008026;ATP-dependent helicase activity;5.32502101957586e-08!GO:0050657;nucleic acid transport;5.36714318817542e-08!GO:0051236;establishment of RNA localization;5.36714318817542e-08!GO:0050658;RNA transport;5.36714318817542e-08!GO:0005768;endosome;6.34141353966513e-08!GO:0006403;RNA localization;6.82334658781673e-08!GO:0051188;cofactor biosynthetic process;7.63874577364244e-08!GO:0030120;vesicle coat;8.06545912468088e-08!GO:0030662;coated vesicle membrane;8.06545912468088e-08!GO:0043566;structure-specific DNA binding;8.66522763155455e-08!GO:0006099;tricarboxylic acid cycle;8.66522763155455e-08!GO:0046356;acetyl-CoA catabolic process;8.66522763155455e-08!GO:0006333;chromatin assembly or disassembly;9.13479040537071e-08!GO:0009141;nucleoside triphosphate metabolic process;1.00234950418844e-07!GO:0015986;ATP synthesis coupled proton transport;1.07777525730431e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.07777525730431e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.23191201293865e-07!GO:0032446;protein modification by small protein conjugation;1.48277764121276e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.52674548958655e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.52674548958655e-07!GO:0051170;nuclear import;1.63307340078323e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.69452680613704e-07!GO:0046930;pore complex;1.73305067899791e-07!GO:0003697;single-stranded DNA binding;1.81558747833977e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.94955263480466e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.38223006230566e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.38223006230566e-07!GO:0016567;protein ubiquitination;2.45929240956387e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.45929240956387e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.58873666986218e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.58873666986218e-07!GO:0009109;coenzyme catabolic process;2.83835147074434e-07!GO:0050789;regulation of biological process;3.72665624333795e-07!GO:0016740;transferase activity;3.7878442555914e-07!GO:0006084;acetyl-CoA metabolic process;4.08267757433361e-07!GO:0006606;protein import into nucleus;4.11734413047678e-07!GO:0016779;nucleotidyltransferase activity;5.4507298116671e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.78175719076393e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.53874694580336e-07!GO:0043069;negative regulation of programmed cell death;7.62135853824108e-07!GO:0006888;ER to Golgi vesicle-mediated transport;7.7698396542305e-07!GO:0031324;negative regulation of cellular metabolic process;1.0379556549868e-06!GO:0044431;Golgi apparatus part;1.04978891177327e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.05839864121794e-06!GO:0051187;cofactor catabolic process;1.17345059442164e-06!GO:0043623;cellular protein complex assembly;1.1811807970022e-06!GO:0019829;cation-transporting ATPase activity;1.21819658171111e-06!GO:0000245;spliceosome assembly;1.22351094881137e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.25176903390611e-06!GO:0006916;anti-apoptosis;1.36784561881476e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.4275672994764e-06!GO:0006754;ATP biosynthetic process;1.62989617731966e-06!GO:0006753;nucleoside phosphate metabolic process;1.62989617731966e-06!GO:0015630;microtubule cytoskeleton;1.70105166951641e-06!GO:0009108;coenzyme biosynthetic process;1.74017612536483e-06!GO:0043066;negative regulation of apoptosis;1.74017612536483e-06!GO:0016568;chromatin modification;1.87495855843846e-06!GO:0005525;GTP binding;1.95627462115437e-06!GO:0046034;ATP metabolic process;2.17470886946087e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.43164747040859e-06!GO:0051028;mRNA transport;2.43164747040859e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.54243766372898e-06!GO:0009117;nucleotide metabolic process;2.54243766372898e-06!GO:0045259;proton-transporting ATP synthase complex;2.70355671660799e-06!GO:0004298;threonine endopeptidase activity;4.21022948532262e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.56018964669443e-06!GO:0016491;oxidoreductase activity;4.56713764386265e-06!GO:0006752;group transfer coenzyme metabolic process;4.56713764386265e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.5986943185301e-06!GO:0006334;nucleosome assembly;5.83557452340765e-06!GO:0005667;transcription factor complex;6.30000704822083e-06!GO:0016859;cis-trans isomerase activity;7.01682088692748e-06!GO:0031497;chromatin assembly;7.69381325606828e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.31851065765331e-06!GO:0006793;phosphorus metabolic process;9.54795309403071e-06!GO:0006796;phosphate metabolic process;9.54795309403071e-06!GO:0016481;negative regulation of transcription;1.18954906512585e-05!GO:0006613;cotranslational protein targeting to membrane;1.21402587758808e-05!GO:0031252;leading edge;1.21471125651598e-05!GO:0016853;isomerase activity;1.32356076268813e-05!GO:0009892;negative regulation of metabolic process;1.33065221858151e-05!GO:0031988;membrane-bound vesicle;1.34428658931811e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.47899994168731e-05!GO:0016787;hydrolase activity;1.71696470047636e-05!GO:0005813;centrosome;1.73802244335404e-05!GO:0000139;Golgi membrane;1.78755454604907e-05!GO:0048522;positive regulation of cellular process;1.81016559867855e-05!GO:0005762;mitochondrial large ribosomal subunit;1.87937987531144e-05!GO:0000315;organellar large ribosomal subunit;1.87937987531144e-05!GO:0003724;RNA helicase activity;1.91735336754304e-05!GO:0045786;negative regulation of progression through cell cycle;2.03285604232574e-05!GO:0044440;endosomal part;2.22717327806837e-05!GO:0010008;endosome membrane;2.22717327806837e-05!GO:0019899;enzyme binding;2.36041866650323e-05!GO:0019222;regulation of metabolic process;2.51453232108942e-05!GO:0032561;guanyl ribonucleotide binding;3.10885186739715e-05!GO:0019001;guanyl nucleotide binding;3.10885186739715e-05!GO:0000151;ubiquitin ligase complex;3.16622866956549e-05!GO:0042802;identical protein binding;3.17927690287239e-05!GO:0043021;ribonucleoprotein binding;3.39156707274965e-05!GO:0051329;interphase of mitotic cell cycle;3.46317180097635e-05!GO:0051427;hormone receptor binding;3.53244741255967e-05!GO:0005788;endoplasmic reticulum lumen;3.655497146385e-05!GO:0003713;transcription coactivator activity;4.15488052227632e-05!GO:0016564;transcription repressor activity;4.38769408484937e-05!GO:0003899;DNA-directed RNA polymerase activity;4.96563249889417e-05!GO:0008654;phospholipid biosynthetic process;5.89024947531458e-05!GO:0005798;Golgi-associated vesicle;6.13106286405303e-05!GO:0005815;microtubule organizing center;6.14631301263936e-05!GO:0016310;phosphorylation;6.14631301263936e-05!GO:0035257;nuclear hormone receptor binding;6.91339185258614e-05!GO:0005769;early endosome;7.07864620520786e-05!GO:0016126;sterol biosynthetic process;7.19781267896634e-05!GO:0031982;vesicle;7.26884259595533e-05!GO:0030118;clathrin coat;7.84558785466462e-05!GO:0016363;nuclear matrix;8.69243104979117e-05!GO:0065009;regulation of a molecular function;8.69243104979117e-05!GO:0048471;perinuclear region of cytoplasm;8.99617320546681e-05!GO:0000314;organellar small ribosomal subunit;9.27645971278899e-05!GO:0005763;mitochondrial small ribosomal subunit;9.27645971278899e-05!GO:0051325;interphase;9.42650358611711e-05!GO:0006261;DNA-dependent DNA replication;9.91521245655962e-05!GO:0005770;late endosome;9.94506609050176e-05!GO:0008092;cytoskeletal protein binding;0.000102782049153754!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000105171822098551!GO:0031410;cytoplasmic vesicle;0.000106287252118076!GO:0009967;positive regulation of signal transduction;0.000132431729400286!GO:0030119;AP-type membrane coat adaptor complex;0.000165064771852824!GO:0005819;spindle;0.000168062767942903!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000172281361250363!GO:0003690;double-stranded DNA binding;0.000185161547900849!GO:0015980;energy derivation by oxidation of organic compounds;0.000193192516916742!GO:0007243;protein kinase cascade;0.000226161502415431!GO:0045454;cell redox homeostasis;0.000226161502415431!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000226161502415431!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000231347368310589!GO:0016563;transcription activator activity;0.000232688156488349!GO:0003714;transcription corepressor activity;0.000247265216621772!GO:0030867;rough endoplasmic reticulum membrane;0.000269854734386174!GO:0051168;nuclear export;0.000291629376187525!GO:0050662;coenzyme binding;0.000301397334271763!GO:0030036;actin cytoskeleton organization and biogenesis;0.000301664964093883!GO:0007264;small GTPase mediated signal transduction;0.000303592646929028!GO:0006612;protein targeting to membrane;0.000311011362357436!GO:0051252;regulation of RNA metabolic process;0.000311491082000313!GO:0007010;cytoskeleton organization and biogenesis;0.00031293856046143!GO:0030131;clathrin adaptor complex;0.000324026372394412!GO:0003729;mRNA binding;0.000343313206914413!GO:0031968;organelle outer membrane;0.000346461563636793!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000356996101512947!GO:0008186;RNA-dependent ATPase activity;0.000357809018305861!GO:0019867;outer membrane;0.000361199881726365!GO:0005048;signal sequence binding;0.000426877132024972!GO:0000075;cell cycle checkpoint;0.000426919291246955!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000447281238669867!GO:0045892;negative regulation of transcription, DNA-dependent;0.000498353241776852!GO:0007088;regulation of mitosis;0.000504783612527072!GO:0065007;biological regulation;0.000558446379308!GO:0005741;mitochondrial outer membrane;0.000583969456529876!GO:0005885;Arp2/3 protein complex;0.000590038461951228!GO:0006626;protein targeting to mitochondrion;0.000598007085862493!GO:0008250;oligosaccharyl transferase complex;0.000605235348100234!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000613566104335442!GO:0006091;generation of precursor metabolites and energy;0.000613566104335442!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000674175590534128!GO:0006695;cholesterol biosynthetic process;0.000674973155749003!GO:0006839;mitochondrial transport;0.000677442900925574!GO:0005791;rough endoplasmic reticulum;0.00076031408427844!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000774334829686132!GO:0001726;ruffle;0.000798616654863535!GO:0006417;regulation of translation;0.000802991338076999!GO:0044452;nucleolar part;0.000818310124018261!GO:0043488;regulation of mRNA stability;0.000849449908865169!GO:0043487;regulation of RNA stability;0.000849449908865169!GO:0045893;positive regulation of transcription, DNA-dependent;0.000849449908865169!GO:0051920;peroxiredoxin activity;0.000872451586295593!GO:0033116;ER-Golgi intermediate compartment membrane;0.000879455451602401!GO:0008610;lipid biosynthetic process;0.000898138277223637!GO:0048518;positive regulation of biological process;0.000905559491178059!GO:0004576;oligosaccharyl transferase activity;0.000930218402924137!GO:0005657;replication fork;0.000941514814470478!GO:0030031;cell projection biogenesis;0.000961559710447519!GO:0004004;ATP-dependent RNA helicase activity;0.000984646918084984!GO:0043681;protein import into mitochondrion;0.0010400034457043!GO:0006402;mRNA catabolic process;0.00105656004609839!GO:0000059;protein import into nucleus, docking;0.00107018145140213!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00111116846774192!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00111116846774192!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00111116846774192!GO:0008033;tRNA processing;0.00111239340645303!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00118560759416586!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00119805425237497!GO:0008632;apoptotic program;0.00120202553691556!GO:0030132;clathrin coat of coated pit;0.00126013935623328!GO:0051287;NAD binding;0.00133468110622152!GO:0007006;mitochondrial membrane organization and biogenesis;0.00140763024483866!GO:0005905;coated pit;0.00141636849901495!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00143828922560618!GO:0030029;actin filament-based process;0.00145293485912095!GO:0007051;spindle organization and biogenesis;0.00147982232527367!GO:0006891;intra-Golgi vesicle-mediated transport;0.00152493112307812!GO:0030658;transport vesicle membrane;0.00152493112307812!GO:0005856;cytoskeleton;0.00161070452486953!GO:0008094;DNA-dependent ATPase activity;0.00168138133217275!GO:0009116;nucleoside metabolic process;0.00172962160994848!GO:0005773;vacuole;0.00173749551039511!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00176101819523951!GO:0019843;rRNA binding;0.00180019805394573!GO:0006414;translational elongation;0.00180019805394573!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00187644522758651!GO:0015631;tubulin binding;0.0018796066425559!GO:0051789;response to protein stimulus;0.00191054406564157!GO:0006986;response to unfolded protein;0.00191054406564157!GO:0051052;regulation of DNA metabolic process;0.00199573023759804!GO:0030880;RNA polymerase complex;0.00202675968803662!GO:0031323;regulation of cellular metabolic process;0.00204535277818354!GO:0003684;damaged DNA binding;0.00204535277818354!GO:0016044;membrane organization and biogenesis;0.00204746007434009!GO:0006401;RNA catabolic process;0.00218749550454423!GO:0048500;signal recognition particle;0.00227602844421547!GO:0019752;carboxylic acid metabolic process;0.00235172632050088!GO:0031072;heat shock protein binding;0.00236080799995851!GO:0008139;nuclear localization sequence binding;0.00239046819693215!GO:0018196;peptidyl-asparagine modification;0.00239853110670854!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00239853110670854!GO:0000049;tRNA binding;0.00255173352310324!GO:0050790;regulation of catalytic activity;0.00256699539060354!GO:0030133;transport vesicle;0.00260183724254014!GO:0006082;organic acid metabolic process;0.00261990453192838!GO:0043065;positive regulation of apoptosis;0.00265785842966742!GO:0008243;plasminogen activator activity;0.0026618505401126!GO:0006289;nucleotide-excision repair;0.00267634877415292!GO:0030663;COPI coated vesicle membrane;0.00267634877415292!GO:0030126;COPI vesicle coat;0.00267634877415292!GO:0045941;positive regulation of transcription;0.00298436653121579!GO:0009112;nucleobase metabolic process;0.00304894424210802!GO:0048037;cofactor binding;0.00318646303960104!GO:0003711;transcription elongation regulator activity;0.00326228298561156!GO:0043068;positive regulation of programmed cell death;0.00327991376333686!GO:0000786;nucleosome;0.00339870318517434!GO:0006383;transcription from RNA polymerase III promoter;0.00341428994692952!GO:0008361;regulation of cell size;0.00351443716289232!GO:0009165;nucleotide biosynthetic process;0.00357340783791183!GO:0048468;cell development;0.00360984714449196!GO:0046467;membrane lipid biosynthetic process;0.00363950082851101!GO:0046474;glycerophospholipid biosynthetic process;0.00384788811490929!GO:0051098;regulation of binding;0.00388966684311414!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00397632432011324!GO:0030660;Golgi-associated vesicle membrane;0.00401176191843075!GO:0008312;7S RNA binding;0.00402771963936297!GO:0005684;U2-dependent spliceosome;0.00407808681312011!GO:0030125;clathrin vesicle coat;0.00413051375802833!GO:0030665;clathrin coated vesicle membrane;0.00413051375802833!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00413588233893479!GO:0000428;DNA-directed RNA polymerase complex;0.00413588233893479!GO:0000323;lytic vacuole;0.00414493286196657!GO:0005764;lysosome;0.00414493286196657!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00419742251543792!GO:0007050;cell cycle arrest;0.00434338313469394!GO:0031326;regulation of cellular biosynthetic process;0.0044504197859366!GO:0016251;general RNA polymerase II transcription factor activity;0.00448851855709333!GO:0030176;integral to endoplasmic reticulum membrane;0.00456465796743695!GO:0006350;transcription;0.00472512627530476!GO:0000082;G1/S transition of mitotic cell cycle;0.00488331851849146!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0048963130531782!GO:0016049;cell growth;0.00503331372626009!GO:0051101;regulation of DNA binding;0.0050361754197617!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00504769059330176!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00504769059330176!GO:0016408;C-acyltransferase activity;0.00513979976009288!GO:0003682;chromatin binding;0.00535071264406437!GO:0051540;metal cluster binding;0.00536329315472604!GO:0051536;iron-sulfur cluster binding;0.00536329315472604!GO:0006302;double-strand break repair;0.00536854060441056!GO:0046489;phosphoinositide biosynthetic process;0.00538108569517147!GO:0006352;transcription initiation;0.00548188968678165!GO:0008637;apoptotic mitochondrial changes;0.00549815771757853!GO:0004674;protein serine/threonine kinase activity;0.00550045476893608!GO:0008180;signalosome;0.00551839671120092!GO:0003746;translation elongation factor activity;0.00553680433635727!GO:0030137;COPI-coated vesicle;0.00565915399696181!GO:0051087;chaperone binding;0.00572764970829632!GO:0048487;beta-tubulin binding;0.00578085096767849!GO:0030027;lamellipodium;0.00578683745461658!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00587619471712072!GO:0045047;protein targeting to ER;0.00587619471712072!GO:0006310;DNA recombination;0.00600595104801279!GO:0030521;androgen receptor signaling pathway;0.00600595104801279!GO:0006595;polyamine metabolic process;0.0061285773010784!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00629329063082225!GO:0043022;ribosome binding;0.00649345367958009!GO:0006611;protein export from nucleus;0.00664550242186614!GO:0006520;amino acid metabolic process;0.00673028392251606!GO:0035258;steroid hormone receptor binding;0.00682313915994484!GO:0003678;DNA helicase activity;0.00721338594166642!GO:0017166;vinculin binding;0.00727122521337158!GO:0005869;dynactin complex;0.00743815139573096!GO:0006144;purine base metabolic process;0.00757618179804943!GO:0016197;endosome transport;0.00758741188083362!GO:0051338;regulation of transferase activity;0.00773434922937407!GO:0000775;chromosome, pericentric region;0.00784209825147267!GO:0008629;induction of apoptosis by intracellular signals;0.00801579778496051!GO:0032984;macromolecular complex disassembly;0.00823446543886816!GO:0043624;cellular protein complex disassembly;0.00823446543886816!GO:0046483;heterocycle metabolic process;0.00868727907385948!GO:0010468;regulation of gene expression;0.00870372989124815!GO:0009889;regulation of biosynthetic process;0.00922146850468088!GO:0030032;lamellipodium biogenesis;0.00927153362722995!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00950253099299769!GO:0006354;RNA elongation;0.0095287168216773!GO:0005149;interleukin-1 receptor binding;0.00988346514369234!GO:0000776;kinetochore;0.0101277764597336!GO:0008652;amino acid biosynthetic process;0.0101616502886396!GO:0016272;prefoldin complex;0.0106605496813086!GO:0016584;nucleosome positioning;0.010884523760703!GO:0015992;proton transport;0.0109010884097112!GO:0001558;regulation of cell growth;0.011577204472838!GO:0050750;low-density lipoprotein receptor binding;0.0117318988619369!GO:0031124;mRNA 3'-end processing;0.0117806289240796!GO:0005832;chaperonin-containing T-complex;0.0118136049350704!GO:0007052;mitotic spindle organization and biogenesis;0.0119657154909602!GO:0006338;chromatin remodeling;0.0120305251378751!GO:0006818;hydrogen transport;0.0121737506544129!GO:0046822;regulation of nucleocytoplasmic transport;0.0125024959685381!GO:0009303;rRNA transcription;0.0125692637075873!GO:0030134;ER to Golgi transport vesicle;0.0128948750622605!GO:0007093;mitotic cell cycle checkpoint;0.0129010984942503!GO:0006979;response to oxidative stress;0.0130999975992811!GO:0006950;response to stress;0.0135484524985171!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0138993742424564!GO:0000339;RNA cap binding;0.0139021550920305!GO:0031625;ubiquitin protein ligase binding;0.0140180517221977!GO:0006509;membrane protein ectodomain proteolysis;0.0141819095246738!GO:0033619;membrane protein proteolysis;0.0141819095246738!GO:0031529;ruffle organization and biogenesis;0.0142334366444394!GO:0006650;glycerophospholipid metabolic process;0.0144238406045461!GO:0006376;mRNA splice site selection;0.0144333809522043!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0144333809522043!GO:0043549;regulation of kinase activity;0.014509966829423!GO:0051128;regulation of cellular component organization and biogenesis;0.0145566960909491!GO:0006405;RNA export from nucleus;0.0148743273571783!GO:0005637;nuclear inner membrane;0.0150063875090353!GO:0043241;protein complex disassembly;0.0150074090149632!GO:0032508;DNA duplex unwinding;0.0159059184991618!GO:0032392;DNA geometric change;0.0159059184991618!GO:0008022;protein C-terminus binding;0.0159369849376995!GO:0031970;organelle envelope lumen;0.0162786584003913!GO:0008168;methyltransferase activity;0.0162786584003913!GO:0030833;regulation of actin filament polymerization;0.0163741254117152!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0167456547139515!GO:0016741;transferase activity, transferring one-carbon groups;0.0168072981048705!GO:0000209;protein polyubiquitination;0.0168468301724617!GO:0042770;DNA damage response, signal transduction;0.0168626686598477!GO:0007004;telomere maintenance via telomerase;0.017256323447675!GO:0005758;mitochondrial intermembrane space;0.0172601671321698!GO:0001836;release of cytochrome c from mitochondria;0.0172811004748397!GO:0008097;5S rRNA binding;0.0174352473174034!GO:0016125;sterol metabolic process;0.0179596852500966!GO:0032200;telomere organization and biogenesis;0.0182604722480836!GO:0000723;telomere maintenance;0.0182604722480836!GO:0030127;COPII vesicle coat;0.0184626123970978!GO:0012507;ER to Golgi transport vesicle membrane;0.0184626123970978!GO:0030384;phosphoinositide metabolic process;0.0189569886594931!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0189664024003402!GO:0033673;negative regulation of kinase activity;0.0189804147155142!GO:0006469;negative regulation of protein kinase activity;0.0189804147155142!GO:0035035;histone acetyltransferase binding;0.0189880361970067!GO:0000178;exosome (RNase complex);0.0190279057759675!GO:0045792;negative regulation of cell size;0.0190279057759675!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0191488972789602!GO:0007265;Ras protein signal transduction;0.0192504961142959!GO:0048146;positive regulation of fibroblast proliferation;0.0197468270312507!GO:0005874;microtubule;0.0199576820599335!GO:0006275;regulation of DNA replication;0.0201577094047957!GO:0008283;cell proliferation;0.0202350323672605!GO:0016407;acetyltransferase activity;0.0202353425844829!GO:0006917;induction of apoptosis;0.0206234154752661!GO:0046983;protein dimerization activity;0.0206903006274761!GO:0031901;early endosome membrane;0.0207562038972519!GO:0008234;cysteine-type peptidase activity;0.020881444390935!GO:0051539;4 iron, 4 sulfur cluster binding;0.0210205717031788!GO:0045045;secretory pathway;0.0211439184329891!GO:0022890;inorganic cation transmembrane transporter activity;0.0222073792670779!GO:0004527;exonuclease activity;0.022271702109202!GO:0006268;DNA unwinding during replication;0.0226039402137711!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0227433080104837!GO:0015002;heme-copper terminal oxidase activity;0.0227433080104837!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0227433080104837!GO:0004129;cytochrome-c oxidase activity;0.0227433080104837!GO:0030308;negative regulation of cell growth;0.0227433080104837!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0227433080104837!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0231251729242791!GO:0030041;actin filament polymerization;0.0233549487001496!GO:0045926;negative regulation of growth;0.0235193084047706!GO:0000086;G2/M transition of mitotic cell cycle;0.0235743419359346!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0238560770070763!GO:0004680;casein kinase activity;0.0239871757200309!GO:0048144;fibroblast proliferation;0.0245759901926795!GO:0048145;regulation of fibroblast proliferation;0.0245759901926795!GO:0007034;vacuolar transport;0.0247330044639267!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0255540779583577!GO:0000792;heterochromatin;0.0257064271464212!GO:0004518;nuclease activity;0.025801700877019!GO:0000228;nuclear chromosome;0.025801700877019!GO:0005862;muscle thin filament tropomyosin;0.0258615387564803!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0262216857067974!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0262216857067974!GO:0015399;primary active transmembrane transporter activity;0.0262216857067974!GO:0012502;induction of programmed cell death;0.026839022568551!GO:0045334;clathrin-coated endocytic vesicle;0.026839022568551!GO:0009119;ribonucleoside metabolic process;0.026839022568551!GO:0043154;negative regulation of caspase activity;0.0269769513351321!GO:0046966;thyroid hormone receptor binding;0.0269789266968784!GO:0050681;androgen receptor binding;0.0275121230600782!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0279413136831606!GO:0006378;mRNA polyadenylation;0.0293561032581414!GO:0006284;base-excision repair;0.029825104576855!GO:0051348;negative regulation of transferase activity;0.030210174229643!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.030210174229643!GO:0030518;steroid hormone receptor signaling pathway;0.0303973945414136!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0304816043666633!GO:0030145;manganese ion binding;0.0327327616076272!GO:0006892;post-Golgi vesicle-mediated transport;0.0332205070661975!GO:0008426;protein kinase C inhibitor activity;0.0335115338359551!GO:0000096;sulfur amino acid metabolic process;0.0335115338359551!GO:0042393;histone binding;0.0335115338359551!GO:0008538;proteasome activator activity;0.0335784590355893!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0337676821727074!GO:0022406;membrane docking;0.0339093649184183!GO:0048278;vesicle docking;0.0339093649184183!GO:0043550;regulation of lipid kinase activity;0.0340126958905686!GO:0031123;RNA 3'-end processing;0.0340417743261932!GO:0005938;cell cortex;0.0341559902634889!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0343715535464835!GO:0045859;regulation of protein kinase activity;0.0344515519616394!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.03486052050451!GO:0007266;Rho protein signal transduction;0.0350633383973824!GO:0007021;tubulin folding;0.0360204117446942!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0360652440543416!GO:0004532;exoribonuclease activity;0.0367043254988388!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0367043254988388!GO:0005669;transcription factor TFIID complex;0.0369053550852682!GO:0031371;ubiquitin conjugating enzyme complex;0.0369259667619438!GO:0006497;protein amino acid lipidation;0.0369259667619438!GO:0040029;regulation of gene expression, epigenetic;0.0374976776940696!GO:0048660;regulation of smooth muscle cell proliferation;0.0377135500427911!GO:0006607;NLS-bearing substrate import into nucleus;0.0378092833992959!GO:0005784;translocon complex;0.0378186392072976!GO:0006541;glutamine metabolic process;0.0381767545762283!GO:0051336;regulation of hydrolase activity;0.0387449559138799!GO:0006984;ER-nuclear signaling pathway;0.0389355934983251!GO:0022411;cellular component disassembly;0.0389355934983251!GO:0032774;RNA biosynthetic process;0.0389658538711779!GO:0046128;purine ribonucleoside metabolic process;0.0390223267904354!GO:0042278;purine nucleoside metabolic process;0.0390223267904354!GO:0000781;chromosome, telomeric region;0.039032630502048!GO:0051059;NF-kappaB binding;0.0392776415233221!GO:0017134;fibroblast growth factor binding;0.0396465117012562!GO:0009124;nucleoside monophosphate biosynthetic process;0.0397394147844653!GO:0009123;nucleoside monophosphate metabolic process;0.0397394147844653!GO:0022408;negative regulation of cell-cell adhesion;0.0405281870350235!GO:0030659;cytoplasmic vesicle membrane;0.0407982626725961!GO:0009451;RNA modification;0.0410157760871561!GO:0003756;protein disulfide isomerase activity;0.0436817362557711!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0436817362557711!GO:0006351;transcription, DNA-dependent;0.0436817362557711!GO:0030128;clathrin coat of endocytic vesicle;0.0436817362557711!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0436817362557711!GO:0030122;AP-2 adaptor complex;0.0436817362557711!GO:0006506;GPI anchor biosynthetic process;0.0436817362557711!GO:0051272;positive regulation of cell motility;0.0440100975579374!GO:0040017;positive regulation of locomotion;0.0440100975579374!GO:0006904;vesicle docking during exocytosis;0.0440100975579374!GO:0042158;lipoprotein biosynthetic process;0.0441920054960086!GO:0004448;isocitrate dehydrogenase activity;0.0445926940239457!GO:0016791;phosphoric monoester hydrolase activity;0.0445926940239457!GO:0030911;TPR domain binding;0.0452248625389853!GO:0006505;GPI anchor metabolic process;0.045279387635181!GO:0000922;spindle pole;0.045936953956491!GO:0006643;membrane lipid metabolic process;0.0460779056705393!GO:0031902;late endosome membrane;0.0460779056705393!GO:0006740;NADPH regeneration;0.0464825412382409!GO:0006098;pentose-phosphate shunt;0.0464825412382409!GO:0003702;RNA polymerase II transcription factor activity;0.0467777427002625!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.046798359784542!GO:0009081;branched chain family amino acid metabolic process;0.0470037985095228!GO:0004003;ATP-dependent DNA helicase activity;0.0475705509126004!GO:0043281;regulation of caspase activity;0.047571382246828!GO:0043284;biopolymer biosynthetic process;0.0478843316808129!GO:0009161;ribonucleoside monophosphate metabolic process;0.0479085571332807!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0479085571332807!GO:0001952;regulation of cell-matrix adhesion;0.0481978882678467!GO:0044262;cellular carbohydrate metabolic process;0.0482347230862225!GO:0030057;desmosome;0.0491768348066101!GO:0055092;sterol homeostasis;0.0494156567783784!GO:0042632;cholesterol homeostasis;0.0494156567783784 | |||
|sample_id=11251 | |sample_id=11251 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=TP53:2.69456184943;ZEB1:1.72384883866;SNAI1..3:1.70737853239;PDX1:1.5869321367;VSX1,2:1.48393428583;TBX4,5:1.43410414629;NKX2-3_NKX2-5:1.21932619636;FOXM1:1.21110601555;ADNP_IRX_SIX_ZHX:1.13283959608;RBPJ:1.07956380335;NKX2-2,8:0.997365186281;ONECUT1,2:0.944340415567;ARID5B:0.909742065383;XCPE1{core}:0.85427814023;MYOD1:0.830413071074;POU1F1:0.822783834441;TEAD1:0.795846956382;SP1:0.780732550079;HAND1,2:0.685988839396;FOXQ1:0.672033361332;NKX3-2:0.654446036074;ZNF148:0.613559236759;STAT5{A,B}:0.609518121153;CDC5L:0.604192716679;TEF:0.596885637299;KLF4:0.580857704392;PPARG:0.563338244127;ZNF238:0.549217326225;ZNF423:0.525603586922;NKX2-1,4:0.497858532209;NFIL3:0.482345250399;FOS_FOS{B,L1}_JUN{B,D}:0.468763270474;PAX4:0.463749243301;FOXO1,3,4:0.461538851242;GCM1,2:0.431011575608;CEBPA,B_DDIT3:0.415601085539;CRX:0.398222875694;MAZ:0.390272827243;SMAD1..7,9:0.365264711849;ZIC1..3:0.36488756495;BACH2:0.349199399577;GLI1..3:0.343328413562;PAX1,9:0.338300431973;CDX1,2,4:0.305965890829;LMO2:0.301372212789;SOX17:0.290982529337;TBP:0.278115355674;UFEwm:0.268116430293;GTF2A1,2:0.263834052262;NANOG:0.261568852544;E2F1..5:0.244349497878;POU2F1..3:0.237723897538;MTF1:0.234255410747;SOX2:0.227793546701;HOX{A4,D4}:0.209320422983;bHLH_family:0.203776737857;FOSL2:0.198513224903;PAX6:0.194763138776;POU6F1:0.167267606205;ZNF143:0.138268343163;EBF1:0.135597185789;NKX6-1,2:0.13326924591;PAX5:0.104824137382;GFI1B:0.104127152996;T:0.101093071375;TFCP2:0.0950406166602;RREB1:0.0930723735669;NRF1:0.092904450405;TLX1..3_NFIC{dimer}:0.0769008773757;IRF7:0.0491358399689;NR6A1:0.0451165661037;ZNF384:0.036659635442;YY1:0.0246045751023;TFAP2{A,C}:0.0220371276209;FOXD3:0.0204118626557;HSF1,2:0.0186452947088;ELK1,4_GABP{A,B1}:0.0137188816974;TFDP1:0.0136048227947;RXR{A,B,G}:0.0074526559462;NR5A1,2:0.00586159951042;HMGA1,2:0.00264100365495;GFI1:-0.00110965107748;HLF:-0.0180678110516;TOPORS:-0.0241233106579;LHX3,4:-0.0276404062273;HNF4A_NR2F1,2:-0.0280494063183;NFY{A,B,C}:-0.0305060575448;GZF1:-0.0322238578756;FOX{I1,J2}:-0.0418549412794;EN1,2:-0.0468969619059;NR3C1:-0.0641519561068;REST:-0.0691313393253;MED-1{core}:-0.0722219170829;PAX8:-0.0734340624386;FOXN1:-0.0753658725926;NFIX:-0.0811633817264;MYB:-0.086800043358;AR:-0.0872869174696;IKZF1:-0.0889940517887;NKX3-1:-0.0983536244721;GTF2I:-0.099427146394;POU5F1:-0.109215772552;NFE2:-0.110460797853;HOX{A5,B5}:-0.136514523919;HNF1A:-0.138799519661;HMX1:-0.143417145714;STAT1,3:-0.153431412846;GATA4:-0.156461984721;HOXA9_MEIS1:-0.157173781892;ELF1,2,4:-0.16028702493;NFKB1_REL_RELA:-0.170702461901;OCT4_SOX2{dimer}:-0.177797314506;POU3F1..4:-0.181679788829;FOXL1:-0.191626321097;ZBTB6:-0.200589653137;ZFP161:-0.20468954294;LEF1_TCF7_TCF7L1,2:-0.218818152326;AIRE:-0.226252689306;MYBL2:-0.25075916011;EP300:-0.253944036284;RFX2..5_RFXANK_RFXAP:-0.2615076815;ALX1:-0.265530336427;AHR_ARNT_ARNT2:-0.265766258053;EGR1..3:-0.267506831768;MTE{core}:-0.296796036082;TFAP4:-0.303979002659;EVI1:-0.317633638817;PAX2:-0.318663118643;NHLH1,2:-0.323203736427;MYFfamily:-0.330377763676;NR1H4:-0.344315634993;FOXP3:-0.360843260114;ATF2:-0.374871747091;ETS1,2:-0.379208979229;SOX{8,9,10}:-0.385440552449;IKZF2:-0.388983041358;RFX1:-0.392740920239;SRF:-0.396301522617;MZF1:-0.406471145397;SPIB:-0.417557607999;HIF1A:-0.423115346653;HIC1:-0.425187573366;PBX1:-0.43388992128;SPI1:-0.447408829928;SPZ1:-0.448565270116;GATA6:-0.455559107084;RUNX1..3:-0.458236001028;CUX2:-0.461231582617;ALX4:-0.464946950098;BPTF:-0.466020726078;CREB1:-0.470637862526;FOX{F1,F2,J1}:-0.478926280102;FOX{D1,D2}:-0.497769723102;PITX1..3:-0.500481970794;SOX5:-0.527892235221;ESR1:-0.539803252168;PATZ1:-0.543938758191;JUN:-0.549813333762;PRDM1:-0.552376647687;IRF1,2:-0.556346752513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.558113402302;HES1:-0.558158598201;NFE2L2:-0.565581455711;ATF5_CREB3:-0.571526596412;FOXP1:-0.573693855688;ZBTB16:-0.575535627304;ATF4:-0.583598695152;HBP1_HMGB_SSRP1_UBTF:-0.625366118987;NFATC1..3:-0.641324121541;HOX{A6,A7,B6,B7}:-0.648037724033;MEF2{A,B,C,D}:-0.654703739089;TLX2:-0.686099157081;RORA:-0.733388776201;FOXA2:-0.746882520089;STAT2,4,6:-0.756747424594;TFAP2B:-0.759434115124;DBP:-0.794416681646;PRRX1,2:-0.818034304473;TGIF1:-0.82398344642;ESRRA:-0.86890653817;BREu{core}:-0.89035524528;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.926247071292;NANOG{mouse}:-0.927340136508;MAFB:-1.0113652261;TAL1_TCF{3,4,12}:-1.01741415649;DMAP1_NCOR{1,2}_SMARC:-1.08248671461;PAX3,7:-1.12848069655;RXRA_VDR{dimer}:-1.1939288208;NFE2L1:-1.23520467857;SREBF1,2:-1.30088665277;XBP1:-1.3535159768;ATF6:-1.57970262549 | |top_motifs=TP53:2.69456184943;ZEB1:1.72384883866;SNAI1..3:1.70737853239;PDX1:1.5869321367;VSX1,2:1.48393428583;TBX4,5:1.43410414629;NKX2-3_NKX2-5:1.21932619636;FOXM1:1.21110601555;ADNP_IRX_SIX_ZHX:1.13283959608;RBPJ:1.07956380335;NKX2-2,8:0.997365186281;ONECUT1,2:0.944340415567;ARID5B:0.909742065383;XCPE1{core}:0.85427814023;MYOD1:0.830413071074;POU1F1:0.822783834441;TEAD1:0.795846956382;SP1:0.780732550079;HAND1,2:0.685988839396;FOXQ1:0.672033361332;NKX3-2:0.654446036074;ZNF148:0.613559236759;STAT5{A,B}:0.609518121153;CDC5L:0.604192716679;TEF:0.596885637299;KLF4:0.580857704392;PPARG:0.563338244127;ZNF238:0.549217326225;ZNF423:0.525603586922;NKX2-1,4:0.497858532209;NFIL3:0.482345250399;FOS_FOS{B,L1}_JUN{B,D}:0.468763270474;PAX4:0.463749243301;FOXO1,3,4:0.461538851242;GCM1,2:0.431011575608;CEBPA,B_DDIT3:0.415601085539;CRX:0.398222875694;MAZ:0.390272827243;SMAD1..7,9:0.365264711849;ZIC1..3:0.36488756495;BACH2:0.349199399577;GLI1..3:0.343328413562;PAX1,9:0.338300431973;CDX1,2,4:0.305965890829;LMO2:0.301372212789;SOX17:0.290982529337;TBP:0.278115355674;UFEwm:0.268116430293;GTF2A1,2:0.263834052262;NANOG:0.261568852544;E2F1..5:0.244349497878;POU2F1..3:0.237723897538;MTF1:0.234255410747;SOX2:0.227793546701;HOX{A4,D4}:0.209320422983;bHLH_family:0.203776737857;FOSL2:0.198513224903;PAX6:0.194763138776;POU6F1:0.167267606205;ZNF143:0.138268343163;EBF1:0.135597185789;NKX6-1,2:0.13326924591;PAX5:0.104824137382;GFI1B:0.104127152996;T:0.101093071375;TFCP2:0.0950406166602;RREB1:0.0930723735669;NRF1:0.092904450405;TLX1..3_NFIC{dimer}:0.0769008773757;IRF7:0.0491358399689;NR6A1:0.0451165661037;ZNF384:0.036659635442;YY1:0.0246045751023;TFAP2{A,C}:0.0220371276209;FOXD3:0.0204118626557;HSF1,2:0.0186452947088;ELK1,4_GABP{A,B1}:0.0137188816974;TFDP1:0.0136048227947;RXR{A,B,G}:0.0074526559462;NR5A1,2:0.00586159951042;HMGA1,2:0.00264100365495;GFI1:-0.00110965107748;HLF:-0.0180678110516;TOPORS:-0.0241233106579;LHX3,4:-0.0276404062273;HNF4A_NR2F1,2:-0.0280494063183;NFY{A,B,C}:-0.0305060575448;GZF1:-0.0322238578756;FOX{I1,J2}:-0.0418549412794;EN1,2:-0.0468969619059;NR3C1:-0.0641519561068;REST:-0.0691313393253;MED-1{core}:-0.0722219170829;PAX8:-0.0734340624386;FOXN1:-0.0753658725926;NFIX:-0.0811633817264;MYB:-0.086800043358;AR:-0.0872869174696;IKZF1:-0.0889940517887;NKX3-1:-0.0983536244721;GTF2I:-0.099427146394;POU5F1:-0.109215772552;NFE2:-0.110460797853;HOX{A5,B5}:-0.136514523919;HNF1A:-0.138799519661;HMX1:-0.143417145714;STAT1,3:-0.153431412846;GATA4:-0.156461984721;HOXA9_MEIS1:-0.157173781892;ELF1,2,4:-0.16028702493;NFKB1_REL_RELA:-0.170702461901;OCT4_SOX2{dimer}:-0.177797314506;POU3F1..4:-0.181679788829;FOXL1:-0.191626321097;ZBTB6:-0.200589653137;ZFP161:-0.20468954294;LEF1_TCF7_TCF7L1,2:-0.218818152326;AIRE:-0.226252689306;MYBL2:-0.25075916011;EP300:-0.253944036284;RFX2..5_RFXANK_RFXAP:-0.2615076815;ALX1:-0.265530336427;AHR_ARNT_ARNT2:-0.265766258053;EGR1..3:-0.267506831768;MTE{core}:-0.296796036082;TFAP4:-0.303979002659;EVI1:-0.317633638817;PAX2:-0.318663118643;NHLH1,2:-0.323203736427;MYFfamily:-0.330377763676;NR1H4:-0.344315634993;FOXP3:-0.360843260114;ATF2:-0.374871747091;ETS1,2:-0.379208979229;SOX{8,9,10}:-0.385440552449;IKZF2:-0.388983041358;RFX1:-0.392740920239;SRF:-0.396301522617;MZF1:-0.406471145397;SPIB:-0.417557607999;HIF1A:-0.423115346653;HIC1:-0.425187573366;PBX1:-0.43388992128;SPI1:-0.447408829928;SPZ1:-0.448565270116;GATA6:-0.455559107084;RUNX1..3:-0.458236001028;CUX2:-0.461231582617;ALX4:-0.464946950098;BPTF:-0.466020726078;CREB1:-0.470637862526;FOX{F1,F2,J1}:-0.478926280102;FOX{D1,D2}:-0.497769723102;PITX1..3:-0.500481970794;SOX5:-0.527892235221;ESR1:-0.539803252168;PATZ1:-0.543938758191;JUN:-0.549813333762;PRDM1:-0.552376647687;IRF1,2:-0.556346752513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.558113402302;HES1:-0.558158598201;NFE2L2:-0.565581455711;ATF5_CREB3:-0.571526596412;FOXP1:-0.573693855688;ZBTB16:-0.575535627304;ATF4:-0.583598695152;HBP1_HMGB_SSRP1_UBTF:-0.625366118987;NFATC1..3:-0.641324121541;HOX{A6,A7,B6,B7}:-0.648037724033;MEF2{A,B,C,D}:-0.654703739089;TLX2:-0.686099157081;RORA:-0.733388776201;FOXA2:-0.746882520089;STAT2,4,6:-0.756747424594;TFAP2B:-0.759434115124;DBP:-0.794416681646;PRRX1,2:-0.818034304473;TGIF1:-0.82398344642;ESRRA:-0.86890653817;BREu{core}:-0.89035524528;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.926247071292;NANOG{mouse}:-0.927340136508;MAFB:-1.0113652261;TAL1_TCF{3,4,12}:-1.01741415649;DMAP1_NCOR{1,2}_SMARC:-1.08248671461;PAX3,7:-1.12848069655;RXRA_VDR{dimer}:-1.1939288208;NFE2L1:-1.23520467857;SREBF1,2:-1.30088665277;XBP1:-1.3535159768;ATF6:-1.57970262549 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11251-116E9;search_select_hide=table117:FF:11251-116E9 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Keratinocyte - oral, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10879 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10879
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10879
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.837 |
| 10 | 10 | 0.58 |
| 100 | 100 | 0.938 |
| 101 | 101 | 0.445 |
| 102 | 102 | 0.197 |
| 103 | 103 | 0.115 |
| 104 | 104 | 0.905 |
| 105 | 105 | 0.0495 |
| 106 | 106 | 0.959 |
| 107 | 107 | 0.0384 |
| 108 | 108 | 0.735 |
| 109 | 109 | 0.00478 |
| 11 | 11 | 0.487 |
| 110 | 110 | 0.18 |
| 111 | 111 | 0.358 |
| 112 | 112 | 0.874 |
| 113 | 113 | 0.815 |
| 114 | 114 | 0.717 |
| 115 | 115 | 0.603 |
| 116 | 116 | 0.419 |
| 117 | 117 | 0.329 |
| 118 | 118 | 0.528 |
| 119 | 119 | 0.981 |
| 12 | 12 | 0.792 |
| 120 | 120 | 0.00202 |
| 121 | 121 | 0.819 |
| 122 | 122 | 0.397 |
| 123 | 123 | 0.162 |
| 124 | 124 | 0.207 |
| 125 | 125 | 0.675 |
| 126 | 126 | 0.339 |
| 127 | 127 | 0.602 |
| 128 | 128 | 0.982 |
| 129 | 129 | 0.0573 |
| 13 | 13 | 0.0247 |
| 130 | 130 | 0.341 |
| 131 | 131 | 0.443 |
| 132 | 132 | 0.0926 |
| 133 | 133 | 5.39545e-4 |
| 134 | 134 | 0.0751 |
| 135 | 135 | 0.789 |
| 136 | 136 | 0.0121 |
| 137 | 137 | 0.144 |
| 138 | 138 | 0.941 |
| 139 | 139 | 0.0503 |
| 14 | 14 | 0.919 |
| 140 | 140 | 0.49 |
| 141 | 141 | 0.45 |
| 142 | 142 | 0.226 |
| 143 | 143 | 0.325 |
| 144 | 144 | 0.407 |
| 145 | 145 | 0.252 |
| 146 | 146 | 0.0288 |
| 147 | 147 | 0.369 |
| 148 | 148 | 0.0798 |
| 149 | 149 | 0.673 |
| 15 | 15 | 0.199 |
| 150 | 150 | 0.532 |
| 151 | 151 | 0.578 |
| 152 | 152 | 0.212 |
| 153 | 153 | 0.382 |
| 154 | 154 | 0.515 |
| 155 | 155 | 0.942 |
| 156 | 156 | 0.957 |
| 157 | 157 | 0.987 |
| 158 | 158 | 0.133 |
| 159 | 159 | 0.361 |
| 16 | 16 | 0.111 |
| 160 | 160 | 0.0506 |
| 161 | 161 | 0.231 |
| 162 | 162 | 0.14 |
| 163 | 163 | 0.806 |
| 164 | 164 | 0.883 |
| 165 | 165 | 0.911 |
| 166 | 166 | 0.446 |
| 167 | 167 | 0.16 |
| 168 | 168 | 0.461 |
| 169 | 169 | 0.194 |
| 17 | 17 | 0.221 |
| 18 | 18 | 0.916 |
| 19 | 19 | 0.605 |
| 2 | 2 | 0.0829 |
| 20 | 20 | 0.936 |
| 21 | 21 | 0.937 |
| 22 | 22 | 0.479 |
| 23 | 23 | 0.7 |
| 24 | 24 | 0.00153 |
| 25 | 25 | 0.949 |
| 26 | 26 | 0.745 |
| 27 | 27 | 0.62 |
| 28 | 28 | 0.608 |
| 29 | 29 | 0.339 |
| 3 | 3 | 0.539 |
| 30 | 30 | 0.0454 |
| 31 | 31 | 0.997 |
| 32 | 32 | 0.105 |
| 33 | 33 | 0.0914 |
| 34 | 34 | 0.728 |
| 35 | 35 | 0.125 |
| 36 | 36 | 0.45 |
| 37 | 37 | 0.832 |
| 38 | 38 | 0.418 |
| 39 | 39 | 0.255 |
| 4 | 4 | 0.84 |
| 40 | 40 | 0.159 |
| 41 | 41 | 0.115 |
| 42 | 42 | 0.489 |
| 43 | 43 | 0.948 |
| 44 | 44 | 0.405 |
| 45 | 45 | 0.0444 |
| 46 | 46 | 0.788 |
| 47 | 47 | 0.398 |
| 48 | 48 | 0.173 |
| 49 | 49 | 0.22 |
| 5 | 5 | 0.467 |
| 50 | 50 | 0.351 |
| 51 | 51 | 0.675 |
| 52 | 52 | 0.544 |
| 53 | 53 | 0.435 |
| 54 | 54 | 0.979 |
| 55 | 55 | 0.653 |
| 56 | 56 | 0.481 |
| 57 | 57 | 0.438 |
| 58 | 58 | 0.825 |
| 59 | 59 | 0.556 |
| 6 | 6 | 0.122 |
| 60 | 60 | 0.809 |
| 61 | 61 | 0.934 |
| 62 | 62 | 0.724 |
| 63 | 63 | 0.335 |
| 64 | 64 | 0.626 |
| 65 | 65 | 0.738 |
| 66 | 66 | 0.423 |
| 67 | 67 | 0.316 |
| 68 | 68 | 0.129 |
| 69 | 69 | 0.743 |
| 7 | 7 | 0.51 |
| 70 | 70 | 0.2 |
| 71 | 71 | 0.904 |
| 72 | 72 | 0.527 |
| 73 | 73 | 0.153 |
| 74 | 74 | 0.0293 |
| 75 | 75 | 0.242 |
| 76 | 76 | 0.782 |
| 77 | 77 | 0.0414 |
| 78 | 78 | 0.0335 |
| 79 | 79 | 0.248 |
| 8 | 8 | 0.512 |
| 80 | 80 | 0.106 |
| 81 | 81 | 0.322 |
| 82 | 82 | 0.786 |
| 83 | 83 | 0.276 |
| 84 | 84 | 0.637 |
| 85 | 85 | 0.747 |
| 86 | 86 | 0.259 |
| 87 | 87 | 0.21 |
| 88 | 88 | 0.572 |
| 89 | 89 | 0.267 |
| 9 | 9 | 0.753 |
| 90 | 90 | 0.925 |
| 91 | 91 | 0.989 |
| 92 | 92 | 0.707 |
| 93 | 93 | 0.882 |
| 94 | 94 | 0.831 |
| 95 | 95 | 0.146 |
| 96 | 96 | 0.328 |
| 97 | 97 | 0.867 |
| 98 | 98 | 0.75 |
| 99 | 99 | 0.0382 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10879
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000237 (keratinizing barrier epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002336 (buccal mucosa cell)
0002251 (epithelial cell of alimentary canal)
0002261 (endothelial cell of viscerocranial mucosa)
0002170 (keratinized cell of the oral mucosa)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000033 (head)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000083 (human oral mucosa keratinocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000357 (stratified epithelial stem cell)
CL:0000223 (endodermal cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)
