FF:11253-116F2: Difference between revisions

Latest revision as of 16:28, 3 June 2020

Name:	Prostate Epithelial Cells (polarized), donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10882
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	prostate
dev stage	56 years old adult
sex	male
age	56
cell type	epithelial cell
cell line	NA
company	Cell systems
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005094

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10882		CAGE		DRX008419		DRR009291

Accession ID Hg19

Library id		BAM		CTSS
CNhs10882		DRZ000716		DRZ002101

Accession ID Hg38

Library id		BAM		CTSS
CNhs10882		DRZ012066		DRZ013451

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005094

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10009.CCGTCC		sRNA-Seq		DRX037140		DRR041506

Accession ID Hg19

Library id		BAM		CTSS
SRhi10009.CCGTCC		DRZ007148

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.429
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0.0496
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.052
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.00531
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0267
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.0496
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.174
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.0496
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.171
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0.307
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00764
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0.723
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.205
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0.094
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.384
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.094
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.205
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10882

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.13508e-4
MA0003.1	MA0003.1	0.96
MA0004.1	MA0004.1	0.0122
MA0006.1	MA0006.1	0.535
MA0007.1	MA0007.1	0.711
MA0009.1	MA0009.1	0.128
MA0014.1	MA0014.1	0.0239
MA0017.1	MA0017.1	2.07906e-12
MA0018.2	MA0018.2	0.866
MA0019.1	MA0019.1	0.405
MA0024.1	MA0024.1	1.1328e-5
MA0025.1	MA0025.1	0.0783
MA0027.1	MA0027.1	0.649
MA0028.1	MA0028.1	0.00131
MA0029.1	MA0029.1	0.0132
MA0030.1	MA0030.1	0.147
MA0031.1	MA0031.1	0.105
MA0035.2	MA0035.2	6.51313e-4
MA0038.1	MA0038.1	0.00336
MA0039.2	MA0039.2	0.0126
MA0040.1	MA0040.1	0.143
MA0041.1	MA0041.1	0.544
MA0042.1	MA0042.1	0.392
MA0043.1	MA0043.1	0.785
MA0046.1	MA0046.1	5.61761e-72
MA0047.2	MA0047.2	5.23731e-5
MA0048.1	MA0048.1	0.8
MA0050.1	MA0050.1	5.27617e-4
MA0051.1	MA0051.1	0.0551
MA0052.1	MA0052.1	0.0218
MA0055.1	MA0055.1	0.0164
MA0057.1	MA0057.1	0.79
MA0058.1	MA0058.1	9.25277e-4
MA0059.1	MA0059.1	0.0205
MA0060.1	MA0060.1	1.46278e-12
MA0061.1	MA0061.1	7.69277e-5
MA0062.2	MA0062.2	0.015
MA0065.2	MA0065.2	4.58583e-4
MA0066.1	MA0066.1	0.397
MA0067.1	MA0067.1	0.0478
MA0068.1	MA0068.1	0.64
MA0069.1	MA0069.1	0.797
MA0070.1	MA0070.1	0.194
MA0071.1	MA0071.1	0.621
MA0072.1	MA0072.1	0.466
MA0073.1	MA0073.1	0.564
MA0074.1	MA0074.1	0.232
MA0076.1	MA0076.1	0.00121
MA0077.1	MA0077.1	0.215
MA0078.1	MA0078.1	0.29
MA0079.2	MA0079.2	0.4
MA0080.2	MA0080.2	1.43322e-11
MA0081.1	MA0081.1	0.0174
MA0083.1	MA0083.1	0.0506
MA0084.1	MA0084.1	0.544
MA0087.1	MA0087.1	0.733
MA0088.1	MA0088.1	0.86
MA0090.1	MA0090.1	0.0561
MA0091.1	MA0091.1	0.0473
MA0092.1	MA0092.1	0.0769
MA0093.1	MA0093.1	0.00662
MA0099.2	MA0099.2	1.80387e-7
MA0100.1	MA0100.1	0.566
MA0101.1	MA0101.1	0.0188
MA0102.2	MA0102.2	0.679
MA0103.1	MA0103.1	2.97776e-7
MA0104.2	MA0104.2	0.00509
MA0105.1	MA0105.1	5.15989e-6
MA0106.1	MA0106.1	0.225
MA0107.1	MA0107.1	0.00243
MA0108.2	MA0108.2	0.143
MA0111.1	MA0111.1	0.654
MA0112.2	MA0112.2	0.16
MA0113.1	MA0113.1	0.689
MA0114.1	MA0114.1	1.06626e-16
MA0115.1	MA0115.1	1.71884e-6
MA0116.1	MA0116.1	2.19497e-4
MA0117.1	MA0117.1	0.681
MA0119.1	MA0119.1	0.00171
MA0122.1	MA0122.1	0.401
MA0124.1	MA0124.1	0.331
MA0125.1	MA0125.1	0.016
MA0131.1	MA0131.1	0.421
MA0135.1	MA0135.1	0.197
MA0136.1	MA0136.1	1.64551e-7
MA0137.2	MA0137.2	0.101
MA0138.2	MA0138.2	0.616
MA0139.1	MA0139.1	0.267
MA0140.1	MA0140.1	0.0271
MA0141.1	MA0141.1	0.109
MA0142.1	MA0142.1	0.833
MA0143.1	MA0143.1	0.845
MA0144.1	MA0144.1	0.0817
MA0145.1	MA0145.1	0.257
MA0146.1	MA0146.1	0.403
MA0147.1	MA0147.1	0.032
MA0148.1	MA0148.1	1.70039e-4
MA0149.1	MA0149.1	0.558
MA0150.1	MA0150.1	5.73255e-4
MA0152.1	MA0152.1	0.337
MA0153.1	MA0153.1	1.49207e-53
MA0154.1	MA0154.1	0.00317
MA0155.1	MA0155.1	0.75
MA0156.1	MA0156.1	1.02017e-4
MA0157.1	MA0157.1	0.976
MA0159.1	MA0159.1	0.666
MA0160.1	MA0160.1	0.258
MA0162.1	MA0162.1	0.645
MA0163.1	MA0163.1	0.139
MA0164.1	MA0164.1	0.112
MA0258.1	MA0258.1	0.616
MA0259.1	MA0259.1	0.357

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10882

Novel motif	Logo	P-value
1	1	0.357
10	10	0.3
100	100	0.249
101	101	0.448
102	102	0.606
103	103	0.726
104	104	0.673
105	105	0.782
106	106	0.0982
107	107	0.523
108	108	0.935
109	109	0.431
11	11	0.261
110	110	0.328
111	111	0.841
112	112	0.0957
113	113	0.0361
114	114	0.296
115	115	0.627
116	116	0.66
117	117	0.636
118	118	0.333
119	119	0.88
12	12	0.931
120	120	0.247
121	121	0.501
122	122	0.7
123	123	0.0708
124	124	0.871
125	125	0.0128
126	126	0.543
127	127	0.3
128	128	0.022
129	129	0.88
13	13	0.0354
130	130	0.591
131	131	0.058
132	132	0.872
133	133	0.147
134	134	0.0858
135	135	0.0666
136	136	0.0114
137	137	0.00993
138	138	0.0265
139	139	0.0799
14	14	0.243
140	140	0.992
141	141	0.996
142	142	0.736
143	143	0.0113
144	144	0.369
145	145	0.168
146	146	0.518
147	147	0.789
148	148	0.435
149	149	0.963
15	15	0.339
150	150	0.31
151	151	0.656
152	152	0.141
153	153	0.136
154	154	0.0624
155	155	0.0573
156	156	0.581
157	157	0.873
158	158	0.806
159	159	0.532
16	16	0.554
160	160	0.14
161	161	0.641
162	162	0.878
163	163	0.224
164	164	0.934
165	165	0.604
166	166	0.0723
167	167	0.87
168	168	0.506
169	169	0.462
17	17	0.729
18	18	0.0204
19	19	0.32
2	2	0.535
20	20	0.396
21	21	0.421
22	22	0.665
23	23	0.0195
24	24	0.827
25	25	0.782
26	26	0.794
27	27	0.489
28	28	0.711
29	29	0.504
3	3	0.302
30	30	0.682
31	31	0.796
32	32	0.154
33	33	0.908
34	34	0.442
35	35	0.249
36	36	0.893
37	37	0.597
38	38	0.954
39	39	0.415
4	4	0.784
40	40	0.0967
41	41	0.0134
42	42	0.413
43	43	0.14
44	44	0.184
45	45	0.62
46	46	0.434
47	47	0.944
48	48	0.796
49	49	0.197
5	5	0.21
50	50	0.623
51	51	0.985
52	52	0.711
53	53	0.332
54	54	0.994
55	55	0.207
56	56	0.872
57	57	0.343
58	58	0.457
59	59	0.246
6	6	0.492
60	60	0.263
61	61	0.22
62	62	0.233
63	63	0.409
64	64	0.643
65	65	0.148
66	66	0.0234
67	67	0.167
68	68	0.343
69	69	0.275
7	7	0.458
70	70	0.176
71	71	0.296
72	72	0.356
73	73	0.26
74	74	0.0392
75	75	0.518
76	76	0.747
77	77	0.928
78	78	0.0053
79	79	0.304
8	8	0.508
80	80	0.483
81	81	0.144
82	82	0.024
83	83	0.511
84	84	0.347
85	85	0.0687
86	86	0.358
87	87	0.216
88	88	0.894
89	89	0.358
9	9	0.0464
90	90	0.478
91	91	0.00673
92	92	0.102
93	93	0.702
94	94	0.0318
95	95	0.148
96	96	0.0297
97	97	0.904
98	98	0.468
99	99	0.487

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10882

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000145 human prostate epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002367,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0005156,UBERON:0000077,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0000161,UBERON:0000162,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003102,UBERON:0003929,UBERON:0003104,UBERON:0010147,UBERON:0005256,UBERON:0000925,UBERON:0006598,UBERON:0009846,UBERON:0004185,UBERON:0005157,UBERON:0003937,UBERON:0005399,UBERON:0002532,UBERON:0003353,UBERON:0004902,UBERON:0001555,UBERON:0001008,UBERON:0003101,UBERON:0004122,UBERON:0001353,UBERON:0000163,UBERON:0000079,UBERON:0007026,UBERON:0006866,UBERON:0009142,UBERON:0001046,UBERON:0000164,UBERON:0003064,UBERON:0006595,UBERON:0006603,UBERON:0000931,UBERON:0003820,UBERON:0009847
+|DRA_sample_Accession=CAGE@SAMD00005094
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002231,CL:0000223
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005094
+|accession_numbers=CAGE;DRX008419;DRR009291;DRZ000716;DRZ002101;DRZ012066;DRZ013451
+|accession_numbers_RNASeq=sRNA-Seq;DRX037140;DRR041506;DRZ007148
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000145
 |comment=Previously: Prostate Epithelial Cells, donor1
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.10!125.69!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.02!104.54!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.97!148.54!FOXQ1;;chr2:16080659..16080685,+!p1@MYCN!1.84!67.80!MYCN;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.80!HNF4A;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.56!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.70!48.83!FOXA1;;chr19:46806868..46806883,+!p3@HIF3A!1.61!39.28!HIF3A;;chr2:171571827..171571853,+!p1@SP5!1.57!35.90!SP5;;chr13:28543431..28543487,-!p1@CDX2!1.53!32.63!CDX2;;chr11:61520075..61520136,+!p1@C11orf9!1.51!65.63!C11orf9;;chr20:55204351..55204377,+!p1@TFAP2C!1.50!38.43!TFAP2C;;chr20:43029862..43029900,+!p1@HNF4A!1.46!27.68!HNF4A;;chr6:126221034..126221056,+!p13@NCOA7!1.45!27.07!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.44!81.82!GATA6;;chr14:38064590..38064606,-!p2@FOXA1!1.44!26.71!FOXA1;;chr13:28543285..28543314,-!p2@CDX2!1.44!26.35!CDX2;;chr1:42801540..42801562,-!p4@FOXJ3!1.40!23.93!FOXJ3;;chr7:73038839..73038862,-!p1@MLXIPL!1.36!22.00!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.39!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.35!21.27!GRHL2;;chr7:115608357..115608372,-!p3@TFEC!1.34!21.03!TFEC;;chr16:85932760..85932775,+!p1@IRF8!1.34!20.91!IRF8;;chr19:33793430..33793447,-!p1@CEBPA!1.33!84.72!CEBPA;;chr20:22564895..22564910,-!p1@FOXA2!1.33!20.18!FOXA2;;chr13:28543388..28543406,-!p3@CDX2!1.32!19.82!CDX2;;chr7:156803329..156803362,-!p1@MNX1!1.28!18.25!MNX1;;chr5:2751762..2751784,-!p1@IRX2!1.23!15.95!IRX2;;chr13:73633131..73633149,+!p1@KLF5!1.22!164.73!KLF5;;chr19:926055..926068,+!p2@ARID3A!1.22!33.84!ARID3A;;chr9:138591319..138591340,-!p1@SOHLH1!1.22!15.71!SOHLH1;;chr5:134369905..134369972,-!p1@PITX1!1.21!23.45!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.21!15.11!PITX1;;chr17:45928521..45928539,-!p1@SP6!1.20!14.74!SP6;;chr2:25475120..25475176,-!p2@DNMT3A!1.19!19.46!DNMT3A;;chr7:115608319..115608352,-!p4@TFEC!1.18!14.26!TFEC;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.02!HOXC5;;chr19:46367576..46367592,+!p1@FOXA3!1.17!13.78!FOXA3;;chrX:131547625..131547644,-!p4@MBNL3!1.17!13.66!MBNL3;;chr11:2291814..2291825,-!p2@ASCL2!1.15!13.05!ASCL2;;chr19:926001..926046,+!p1@ARID3A!1.14!44.72!ARID3A;;chr1:214161272..214161322,+!p1@PROX1!1.14!18.25!PROX1;;chr15:96869511..96869525,+!p16@NR2F2!1.14!14.26!NR2F2;;chr1:164528687..164528711,+!p6@PBX1!1.12!14.26!PBX1;;chr5:124084493..124084524,-!p2@ZNF608!1.10!26.11!ZNF608;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.10!11.60!EN2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.10!11.60!SEBOX;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.71!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.35!BMP2;;chr11:65554528..65554546,+!p1@OVOL1!1.06!10.51!OVOL1;;chr2:25475094..25475112,-!p3@DNMT3A!1.05!10.15!DNMT3A;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.50!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.24!IRF6;;chr20:50418128..50418147,-!p2@SALL4!1.04!10.03!SALL4;;chr13:28543253..28543276,-!p5@CDX2!1.03!9.67!CDX2;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.64!GATA3;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.70!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!0.97!8.34!HOXB3;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.90!MSX2;;chr3:24536231..24536249,-!p4@THRB!0.96!8.22!THRB;;chr13:28543316..28543329,-!p4@CDX2!0.96!8.10!CDX2;;chr6:21593973..21593988,+!p1@SOX4!0.94!285.83!SOX4;;chr2:171572786..171572840,+!p2@SP5!0.94!7.61!SP5;;chr6:21597765..21597779,+!p2@SOX4!0.93!63.09!SOX4;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.49!OTX1;;chr4:111558135..111558198,-!p2@PITX2!0.93!7.49!PITX2;;chr3:24536253..24536328,-!p1@THRB!0.92!14.14!THRB;;chr2:171571931..171571959,+!p3@SP5!0.92!7.25!SP5;;chr17:41623692..41623715,-!p1@ETV4!0.91!31.67!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.91!11.12!ETV4;;chr11:19263160..19263176,-!p1@E2F8!0.91!8.46!E2F8;;chr13:79177703..79177729,-!p2@POU4F1!0.91!7.13!POU4F1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.05!MYBL2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.89!MSX2;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.77!IRX2;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.15!ZNF695;;chr2:16081912..16081931,+!p2@MYCN!0.88!6.53!MYCN;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.28!NCOA4;;chr17:36105042..36105060,-!p1@HNF1B!0.87!6.41!HNF1B;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.25!EPAS1;;chr17:7197911..7197964,-!p1@YBX2!0.86!6.28!YBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.28!HOXA9;;chr20:42295713..42295738,+!p2@MYBL2!0.85!38.55!MYBL2;;chr11:47270477..47270494,+!p4@NR1H3!0.85!8.94!NR1H3;;chr12:121416340..121416360,+!p1@HNF1A!0.85!6.04!HNF1A;;chr12:121416455..121416479,+!p2@HNF1A!0.85!6.04!HNF1A;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.34!HOXB7;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.22!ZNF711;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.04!HMGA2;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.34!IRX5;;chr6:126240380..126240430,+!p2@NCOA7!0.81!14.99!NCOA7;;chr19:58326246..58326262,-!p2@ZNF552!0.81!13.66!ZNF552;;chr5:76383133..763831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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002231;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
+|ffid_belonging_in_development=CL:0000223
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11253-116F2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000145;;FF:0000210
+|is_a=EFO:0002091;;FF:0000145
+|is_obsolete=
+|library_id=CNhs10882
+|library_id_phase_based=2:CNhs10882
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11253
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CCGTCC.11253
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11253
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CCGTCC.11253
 |name=Prostate Epithelial Cells (polarized), donor1
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10882,LSID703,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10009,,,
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 |rna_box=116
 |rna_catalog_number=N/A
@@ Line 56: / Line 82: @@
 |rna_tube_id=116F2
 |rna_weight_ug=96
+|rnaseq_library_id=SRhi10009.CCGTCC
 |sample_age=56
+|sample_category=primary cells
 |sample_cell_catalog=CS-ABI-3739
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=prostate
 |top_motifs=HNF1A:3.67607455866;HNF4A_NR2F1,2:3.3108832666;SNAI1..3:2.29529856084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.07137913701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.92911780818;ZEB1:1.81066997991;bHLH_family:1.55535612297;FOXA2:1.46039801308;LEF1_TCF7_TCF7L1,2:1.39465993946;NFY{A,B,C}:1.3814973128;LHX3,4:1.35918845656;ESR1:1.32456830006;FOX{F1,F2,J1}:1.29810631691;MYOD1:1.26478997763;ELK1,4_GABP{A,B1}:1.25378036045;E2F1..5:1.1131262924;ESRRA:1.06789106959;RBPJ:1.06770430042;HOX{A6,A7,B6,B7}:1.03290933879;SP1:0.880602523476;ONECUT1,2:0.857497913287;FOXM1:0.835540036351;T:0.716389148317;NRF1:0.668302143997;PBX1:0.665052884662;STAT5{A,B}:0.659634524698;EVI1:0.641729087582;NKX2-3_NKX2-5:0.621171461813;TEAD1:0.620260036562;FOXN1:0.610269698013;RORA:0.603516309574;XCPE1{core}:0.58075337587;TFDP1:0.56778635853;SOX{8,9,10}:0.542729880434;YY1:0.519654145604;TBP:0.475748390316;EN1,2:0.44774471393;GATA6:0.437692773971;LMO2:0.434085691835;NKX3-2:0.409878114676;ZNF143:0.401814106238;FOXQ1:0.392766985177;GFI1:0.328628266479;SOX17:0.29541046087;TBX4,5:0.294550352835;ATF4:0.290414423391;AIRE:0.276081838072;MYB:0.270475336819;PATZ1:0.269906110401;FOXD3:0.266321066112;HLF:0.25543099338;UFEwm:0.253655749488;MED-1{core}:0.23531791582;ALX4:0.234554946251;ARID5B:0.205492637222;STAT1,3:0.198304723938;HIC1:0.184510230463;SREBF1,2:0.179811153976;HES1:0.172985190466;ATF6:0.161427706209;CDX1,2,4:0.151416530109;HOXA9_MEIS1:0.139792487382;MAZ:0.133926962309;RXR{A,B,G}:0.106332304631;RXRA_VDR{dimer}:0.0917821538274;ZNF384:0.0737913270788;FOX{D1,D2}:0.0427724254213;ADNP_IRX_SIX_ZHX:0.0421372525802;TFAP2B:0.0417718764252;TOPORS:0.0256957747304;ZNF148:0.0135794769502;PITX1..3:0.0135642102877;BREu{core}:0.0130951095262;IKZF2:0.00788110916848;FOXP1:-0.00468989087062;NR6A1:-0.0112874508789;EBF1:-0.0161072120841;HAND1,2:-0.0460945551586;PAX5:-0.0551775137524;TFAP2{A,C}:-0.0581924068351;MTE{core}:-0.05930233772;ZFP161:-0.0934112233487;NR5A1,2:-0.103194126308;PDX1:-0.111852151388;HSF1,2:-0.113882256006;IKZF1:-0.121470850611;VSX1,2:-0.128109401503;CEBPA,B_DDIT3:-0.149951432394;PAX3,7:-0.154577604222;KLF4:-0.157439188312;POU6F1:-0.160856121571;SPZ1:-0.162341839654;CRX:-0.167038691991;PAX1,9:-0.173953022604;HOX{A4,D4}:-0.201382020488;HOX{A5,B5}:-0.235111109504;NFIL3:-0.242395473878;MTF1:-0.243476220835;TFCP2:-0.246927303597;NFKB1_REL_RELA:-0.266257925791;FOS_FOS{B,L1}_JUN{B,D}:-0.281383482424;STAT2,4,6:-0.29889774801;NFE2:-0.302907664185;SOX5:-0.304594862256;ZBTB6:-0.318360810757;POU2F1..3:-0.323502202851;PAX4:-0.34768221565;CUX2:-0.350178080125;CDC5L:-0.350842856517;NHLH1,2:-0.353792060474;ELF1,2,4:-0.364915839581;FOXO1,3,4:-0.367852451557;TEF:-0.370990271293;JUN:-0.37901820213;REST:-0.382161085104;FOSL2:-0.382542265131;RREB1:-0.400403467827;ATF2:-0.405296390229;SOX2:-0.416297566573;OCT4_SOX2{dimer}:-0.418015720422;ATF5_CREB3:-0.419235451492;EGR1..3:-0.443360263783;NR3C1:-0.443962585016;XBP1:-0.448801874971;PPARG:-0.452980915911;PAX2:-0.475639784605;BACH2:-0.482342671828;MYBL2:-0.485442151554;POU1F1:-0.510734869495;TP53:-0.572225248498;MYFfamily:-0.575432609327;HMGA1,2:-0.57556494568;SPI1:-0.609068925283;DMAP1_NCOR{1,2}_SMARC:-0.611496118189;PAX8:-0.6168376728;PRDM1:-0.629466089874;MAFB:-0.633180153539;TLX2:-0.635168981778;GTF2A1,2:-0.63736190212;SPIB:-0.640128742299;NFE2L2:-0.645924309137;DBP:-0.648859325709;NR1H4:-0.662259272483;POU3F1..4:-0.671970468756;ZIC1..3:-0.678640118192;IRF7:-0.723744788208;FOXL1:-0.729176688954;TFAP4:-0.739044119393;NFIX:-0.753961510331;MEF2{A,B,C,D}:-0.75591626176;FOXP3:-0.758767119086;RUNX1..3:-0.763958761654;GTF2I:-0.777049966679;AR:-0.786452572625;PRRX1,2:-0.797951825449;ZNF238:-0.807496769643;ZBTB16:-0.810320063348;MZF1:-0.829269428989;RFX1:-0.838420812573;AHR_ARNT_ARNT2:-0.844858588898;ZNF423:-0.858109527112;RFX2..5_RFXANK_RFXAP:-0.874085967062;NKX6-1,2:-0.878775915277;GFI1B:-0.889272885655;HIF1A:-0.889744390366;ALX1:-0.890365244177;NANOG:-0.92591406991;IRF1,2:-0.93980073757;SRF:-0.940820329206;FOX{I1,J2}:-1.02045370568;ETS1,2:-1.02573467004;TAL1_TCF{3,4,12}:-1.03755115681;NKX2-2,8:-1.0462370962;GLI1..3:-1.07929505369;CREB1:-1.10508369141;BPTF:-1.10557098669;POU5F1:-1.11190676481;GATA4:-1.15606557493;NANOG{mouse}:-1.16316997889;NKX2-1,4:-1.17516328506;HBP1_HMGB_SSRP1_UBTF:-1.23718270211;EP300:-1.25675778408;NKX3-1:-1.26107397046;TLX1..3_NFIC{dimer}:-1.2702434675;GZF1:-1.32175316946;HMX1:-1.3290236583;TGIF1:-1.35175474157;NFE2L1:-1.46920208494;PAX6:-1.51853833501;SMAD1..7,9:-1.61754777451;GCM1,2:-1.71874788692;NFATC1..3:-1.78868700668
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11253-116F2;search_select_hide=table117:FF:11253-116F2
 }}

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FF:11253-116F2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0