FF:11253-116F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005094 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005094 | |||
|accession_numbers=CAGE;DRX008419;DRR009291;DRZ000716;DRZ002101;DRZ012066;DRZ013451 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037140;DRR041506;DRZ007148 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.10!125.69!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.02!104.54!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.97!148.54!FOXQ1;;chr2:16080659..16080685,+!p1@MYCN!1.84!67.80!MYCN;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.80!HNF4A;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.56!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.70!48.83!FOXA1;;chr19:46806868..46806883,+!p3@HIF3A!1.61!39.28!HIF3A;;chr2:171571827..171571853,+!p1@SP5!1.57!35.90!SP5;;chr13:28543431..28543487,-!p1@CDX2!1.53!32.63!CDX2;;chr11:61520075..61520136,+!p1@C11orf9!1.51!65.63!C11orf9;;chr20:55204351..55204377,+!p1@TFAP2C!1.50!38.43!TFAP2C;;chr20:43029862..43029900,+!p1@HNF4A!1.46!27.68!HNF4A;;chr6:126221034..126221056,+!p13@NCOA7!1.45!27.07!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.44!81.82!GATA6;;chr14:38064590..38064606,-!p2@FOXA1!1.44!26.71!FOXA1;;chr13:28543285..28543314,-!p2@CDX2!1.44!26.35!CDX2;;chr1:42801540..42801562,-!p4@FOXJ3!1.40!23.93!FOXJ3;;chr7:73038839..73038862,-!p1@MLXIPL!1.36!22.00!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.39!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.35!21.27!GRHL2;;chr7:115608357..115608372,-!p3@TFEC!1.34!21.03!TFEC;;chr16:85932760..85932775,+!p1@IRF8!1.34!20.91!IRF8;;chr19:33793430..33793447,-!p1@CEBPA!1.33!84.72!CEBPA;;chr20:22564895..22564910,-!p1@FOXA2!1.33!20.18!FOXA2;;chr13:28543388..28543406,-!p3@CDX2!1.32!19.82!CDX2;;chr7:156803329..156803362,-!p1@MNX1!1.28!18.25!MNX1;;chr5:2751762..2751784,-!p1@IRX2!1.23!15.95!IRX2;;chr13:73633131..73633149,+!p1@KLF5!1.22!164.73!KLF5;;chr19:926055..926068,+!p2@ARID3A!1.22!33.84!ARID3A;;chr9:138591319..138591340,-!p1@SOHLH1!1.22!15.71!SOHLH1;;chr5:134369905..134369972,-!p1@PITX1!1.21!23.45!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.21!15.11!PITX1;;chr17:45928521..45928539,-!p1@SP6!1.20!14.74!SP6;;chr2:25475120..25475176,-!p2@DNMT3A!1.19!19.46!DNMT3A;;chr7:115608319..115608352,-!p4@TFEC!1.18!14.26!TFEC;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.02!HOXC5;;chr19:46367576..46367592,+!p1@FOXA3!1.17!13.78!FOXA3;;chrX:131547625..131547644,-!p4@MBNL3!1.17!13.66!MBNL3;;chr11:2291814..2291825,-!p2@ASCL2!1.15!13.05!ASCL2;;chr19:926001..926046,+!p1@ARID3A!1.14!44.72!ARID3A;;chr1:214161272..214161322,+!p1@PROX1!1.14!18.25!PROX1;;chr15:96869511..96869525,+!p16@NR2F2!1.14!14.26!NR2F2;;chr1:164528687..164528711,+!p6@PBX1!1.12!14.26!PBX1;;chr5:124084493..124084524,-!p2@ZNF608!1.10!26.11!ZNF608;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.10!11.60!EN2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.10!11.60!SEBOX;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.71!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.35!BMP2;;chr11:65554528..65554546,+!p1@OVOL1!1.06!10.51!OVOL1;;chr2:25475094..25475112,-!p3@DNMT3A!1.05!10.15!DNMT3A;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.50!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.24!IRF6;;chr20:50418128..50418147,-!p2@SALL4!1.04!10.03!SALL4;;chr13:28543253..28543276,-!p5@CDX2!1.03!9.67!CDX2;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.64!GATA3;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.70!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!0.97!8.34!HOXB3;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.90!MSX2;;chr3:24536231..24536249,-!p4@THRB!0.96!8.22!THRB;;chr13:28543316..28543329,-!p4@CDX2!0.96!8.10!CDX2;;chr6:21593973..21593988,+!p1@SOX4!0.94!285.83!SOX4;;chr2:171572786..171572840,+!p2@SP5!0.94!7.61!SP5;;chr6:21597765..21597779,+!p2@SOX4!0.93!63.09!SOX4;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.49!OTX1;;chr4:111558135..111558198,-!p2@PITX2!0.93!7.49!PITX2;;chr3:24536253..24536328,-!p1@THRB!0.92!14.14!THRB;;chr2:171571931..171571959,+!p3@SP5!0.92!7.25!SP5;;chr17:41623692..41623715,-!p1@ETV4!0.91!31.67!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.91!11.12!ETV4;;chr11:19263160..19263176,-!p1@E2F8!0.91!8.46!E2F8;;chr13:79177703..79177729,-!p2@POU4F1!0.91!7.13!POU4F1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.05!MYBL2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.89!MSX2;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.77!IRX2;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.15!ZNF695;;chr2:16081912..16081931,+!p2@MYCN!0.88!6.53!MYCN;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.28!NCOA4;;chr17:36105042..36105060,-!p1@HNF1B!0.87!6.41!HNF1B;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.25!EPAS1;;chr17:7197911..7197964,-!p1@YBX2!0.86!6.28!YBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.28!HOXA9;;chr20:42295713..42295738,+!p2@MYBL2!0.85!38.55!MYBL2;;chr11:47270477..47270494,+!p4@NR1H3!0.85!8.94!NR1H3;;chr12:121416340..121416360,+!p1@HNF1A!0.85!6.04!HNF1A;;chr12:121416455..121416479,+!p2@HNF1A!0.85!6.04!HNF1A;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.34!HOXB7;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.22!ZNF711;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.04!HMGA2;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.34!IRX5;;chr6:126240380..126240430,+!p2@NCOA7!0.81!14.99!NCOA7;;chr19:58326246..58326262,-!p2@ZNF552!0.81!13.66!ZNF552;;chr5:76383133..7638318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| |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.10!125.69!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.02!104.54!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.97!148.54!FOXQ1;;chr2:16080659..16080685,+!p1@MYCN!1.84!67.80!MYCN;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.80!HNF4A;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.56!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.70!48.83!FOXA1;;chr19:46806868..46806883,+!p3@HIF3A!1.61!39.28!HIF3A;;chr2:171571827..171571853,+!p1@SP5!1.57!35.90!SP5;;chr13:28543431..28543487,-!p1@CDX2!1.53!32.63!CDX2;;chr11:61520075..61520136,+!p1@C11orf9!1.51!65.63!C11orf9;;chr20:55204351..55204377,+!p1@TFAP2C!1.50!38.43!TFAP2C;;chr20:43029862..43029900,+!p1@HNF4A!1.46!27.68!HNF4A;;chr6:126221034..126221056,+!p13@NCOA7!1.45!27.07!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.44!81.82!GATA6;;chr14:38064590..38064606,-!p2@FOXA1!1.44!26.71!FOXA1;;chr13:28543285..28543314,-!p2@CDX2!1.44!26.35!CDX2;;chr1:42801540..42801562,-!p4@FOXJ3!1.40!23.93!FOXJ3;;chr7:73038839..73038862,-!p1@MLXIPL!1.36!22.00!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.39!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.35!21.27!GRHL2;;chr7:115608357..115608372,-!p3@TFEC!1.34!21.03!TFEC;;chr16:85932760..85932775,+!p1@IRF8!1.34!20.91!IRF8;;chr19:33793430..33793447,-!p1@CEBPA!1.33!84.72!CEBPA;;chr20:22564895..22564910,-!p1@FOXA2!1.33!20.18!FOXA2;;chr13:28543388..28543406,-!p3@CDX2!1.32!19.82!CDX2;;chr7:156803329..156803362,-!p1@MNX1!1.28!18.25!MNX1;;chr5:2751762..2751784,-!p1@IRX2!1.23!15.95!IRX2;;chr13:73633131..73633149,+!p1@KLF5!1.22!164.73!KLF5;;chr19:926055..926068,+!p2@ARID3A!1.22!33.84!ARID3A;;chr9:138591319..138591340,-!p1@SOHLH1!1.22!15.71!SOHLH1;;chr5:134369905..134369972,-!p1@PITX1!1.21!23.45!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.21!15.11!PITX1;;chr17:45928521..45928539,-!p1@SP6!1.20!14.74!SP6;;chr2:25475120..25475176,-!p2@DNMT3A!1.19!19.46!DNMT3A;;chr7:115608319..115608352,-!p4@TFEC!1.18!14.26!TFEC;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.02!HOXC5;;chr19:46367576..46367592,+!p1@FOXA3!1.17!13.78!FOXA3;;chrX:131547625..131547644,-!p4@MBNL3!1.17!13.66!MBNL3;;chr11:2291814..2291825,-!p2@ASCL2!1.15!13.05!ASCL2;;chr19:926001..926046,+!p1@ARID3A!1.14!44.72!ARID3A;;chr1:214161272..214161322,+!p1@PROX1!1.14!18.25!PROX1;;chr15:96869511..96869525,+!p16@NR2F2!1.14!14.26!NR2F2;;chr1:164528687..164528711,+!p6@PBX1!1.12!14.26!PBX1;;chr5:124084493..124084524,-!p2@ZNF608!1.10!26.11!ZNF608;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.10!11.60!EN2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.10!11.60!SEBOX;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.71!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.35!BMP2;;chr11:65554528..65554546,+!p1@OVOL1!1.06!10.51!OVOL1;;chr2:25475094..25475112,-!p3@DNMT3A!1.05!10.15!DNMT3A;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.50!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.24!IRF6;;chr20:50418128..50418147,-!p2@SALL4!1.04!10.03!SALL4;;chr13:28543253..28543276,-!p5@CDX2!1.03!9.67!CDX2;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.64!GATA3;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.70!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!0.97!8.34!HOXB3;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.90!MSX2;;chr3:24536231..24536249,-!p4@THRB!0.96!8.22!THRB;;chr13:28543316..28543329,-!p4@CDX2!0.96!8.10!CDX2;;chr6:21593973..21593988,+!p1@SOX4!0.94!285.83!SOX4;;chr2:171572786..171572840,+!p2@SP5!0.94!7.61!SP5;;chr6:21597765..21597779,+!p2@SOX4!0.93!63.09!SOX4;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.49!OTX1;;chr4:111558135..111558198,-!p2@PITX2!0.93!7.49!PITX2;;chr3:24536253..24536328,-!p1@THRB!0.92!14.14!THRB;;chr2:171571931..171571959,+!p3@SP5!0.92!7.25!SP5;;chr17:41623692..41623715,-!p1@ETV4!0.91!31.67!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.91!11.12!ETV4;;chr11:19263160..19263176,-!p1@E2F8!0.91!8.46!E2F8;;chr13:79177703..79177729,-!p2@POU4F1!0.91!7.13!POU4F1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.05!MYBL2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.89!MSX2;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.77!IRX2;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.15!ZNF695;;chr2:16081912..16081931,+!p2@MYCN!0.88!6.53!MYCN;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.28!NCOA4;;chr17:36105042..36105060,-!p1@HNF1B!0.87!6.41!HNF1B;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.25!EPAS1;;chr17:7197911..7197964,-!p1@YBX2!0.86!6.28!YBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.28!HOXA9;;chr20:42295713..42295738,+!p2@MYBL2!0.85!38.55!MYBL2;;chr11:47270477..47270494,+!p4@NR1H3!0.85!8.94!NR1H3;;chr12:121416340..121416360,+!p1@HNF1A!0.85!6.04!HNF1A;;chr12:121416455..121416479,+!p2@HNF1A!0.85!6.04!HNF1A;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.34!HOXB7;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.22!ZNF711;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.04!HMGA2;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.34!IRX5;;chr6:126240380..126240430,+!p2@NCOA7!0.81!14.99!NCOA7;;chr19:58326246..58326262,-!p2@ZNF552!0.81!13.66!ZNF552;;chr5:76383133..76383186,-!p2@ZBED3!0.81!11.84!ZBED3;;chr13:72441315..72441454,-!p1@DACH1!0.81!11.36!DACH1;;chr3:71355163..71355209,-!p5@FOXP1!0.81!7.74!FOXP1;;chr20:32274179..32274213,-!p1@E2F1!0.80!37.95!E2F1;;chr8:102504690..102504704,+!p3@GRHL2!0.80!5.32!GRHL2;;chr17:41622731..41622764,-!p5@ETV4!0.80!5.32!ETV4;;chr19:925727..925784,+!p3@ARID3A!0.79!11.72!ARID3A;;chr10:97889464..97889494,+!p3@ZNF518A!0.79!10.15!ZNF518A;;chr16:54320617..54320643,-!p3@IRX3!0.79!6.89!IRX3;;chr17:48046543..48046575,+!p2@DLX4!0.79!5.20!DLX4;;chr6:41514078..41514158,+!p1@FOXP4!0.77!48.34!FOXP4;;chr11:46299199..46299233,+!p1@CREB3L1!0.77!27.44!CREB3L1;;chr3:40547564..40547616,+!p1@ZNF620!0.77!7.13!ZNF620;;chr17:41623259..41623278,-!p7@ETV4!0.77!5.80!ETV4;;chr1:935398..935465,-!p2@HES4!0.76!10.51!HES4;;chr20:31350184..31350200,+!p1@DNMT3B!0.76!10.51!DNMT3B;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.13!IRX3;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.76!7.01!TGIF2;;chr12:24715376..24715432,-!p1@SOX5!0.76!6.16!SOX5;;chr1:47903709..47903764,+!p1@BC169308!0.76!5.44!FOXD2;;chr11:65554563..65554576,+!p2@OVOL1!0.76!4.71!OVOL1;;chr6:28048343..28048354,+!p1@ZNF165!0.76!4.71!ZNF165;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.06!SOX9;;chr4:4861385..4861398,+!p1@MSX1!0.75!14.99!MSX1;;chr17:46690839..46690884,-!p1@HOXB8!0.75!4.59!HOXB8;;chr19:45579725..45579743,-!p1@ZNF296!0.74!22.24!ZNF296;;chr2:239148671..239148686,-!p1@HES6!0.74!18.25!HES6;;chr17:7197844..7197869,-!p2@YBX2!0.74!4.47!YBX2;;chr8:76319876..76319926,+!p1@HNF4G!0.74!4.47!HNF4G;;chr20:42984073..42984085,+!p5@HNF4A!0.74!4.47!HNF4A;;chr13:73636621..73636647,+!p4@KLF5!0.74!4.47!KLF5;;chr12:51566562..51566584,-!p2@TFCP2!0.73!13.42!TFCP2;;chr10:44101902..44101932,+!p2@ZNF485!0.73!9.55!ZNF485;;chr10:63661437..63661465,+!p2@ARID5B!0.72!91.49!ARID5B;;chr10:96122645..96122675,-!p2@NOC3L!0.72!22.60!NOC3L;;chr18:19749517..19749531,+!p3@GATA6!0.72!7.98!GATA6;;chr8:71316428..71316459,-!p2@NCOA2!0.72!7.61!NCOA2;;chr16:54320646..54320672,-!p2@IRX3!0.72!6.89!IRX3;;chr13:73636252..73636307,+!p2@KLF5!0.72!5.08!KLF5;;chr13:28543409..28543420,-!p8@CDX2!0.72!4.23!CDX2;;chr17:46703687..46703740,-!p1@HOXB9!0.72!4.23!HOXB9;;chr3:181429741..181429767,+!p2@SOX2!0.71!4.11!SOX2;;chr9:124976154..124976177,-!p5@LHX6!0.71!4.11!LHX6;;chr12:66218255..66218304,+!p3@HMGA2!0.70!11.72!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.41!ETV4;;chr16:54320101..54320125,-!p4@IRX3!0.70!5.92!IRX3;;chr6:126240356..126240379,+!p7@NCOA7!0.70!5.08!NCOA7;;chr1:199996831..199996843,+!p4@NR5A2!0.70!3.99!NR5A2;;chr10:60145155..60145206,+!p1@TFAM!0.69!195.07!TFAM;;chr7:26191809..26191890,+!p1@NFE2L3!0.69!21.88!NFE2L3;;chr7:27135591..27135658,-!p1@HOXA1!0.69!8.10!HOXA1;;chrX:131624056..131624069,-!p2@MBNL3!0.69!5.56!MBNL3;;chr12:54332608..54332636,+!p1@HOXC13!0.69!3.87!HOXC13;;chr14:38064536..38064550,-!p7@FOXA1!0.69!3.87!FOXA1;;chr3:181429704..181429722,+!p1@SOX2!0.69!3.87!SOX2;;chr16:54320675..54320715,-!p1@IRX3!0.68!8.94!IRX3;;chr19:17356436..17356481,-!p3@NR2F6!0.68!6.89!NR2F6;;chr6:126240442..126240459,+!p4@NCOA7!0.68!4.96!NCOA7;;chr16:52581025..52581072,-!p1@TOX3!0.68!3.75!TOX3;;chr17:48072574..48072597,-!p1@DLX3!0.68!3.75!DLX3;;chr11:16419037..16419064,-!p3@SOX6!0.68!3.75!SOX6;;chr10:70320074..70320106,+!p1@TET1!0.67!8.10!TET1;;chr12:52430894..52430952,+!p3@NR4A1!0.67!7.61!NR4A1;;chr6:21594845..21594908,+!p6@SOX4!0.67!6.28!SOX4;;chr13:72441074..72441172,-!p2@DACH1!0.67!3.63!DACH1;;chr20:22565370..22565388,-!p2@FOXA2!0.67!3.63!FOXA2;;chr10:44070016..44070069,-!p1@ZNF239!0.66!11.97!ZNF239;;chr3:12330560..12330579,+!p1@PPARG!0.66!4.23!PPARG;;chr4:111544219..111544240,-!p1@PITX2!0.65!3.50!PITX2;;chr13:79177674..79177701,-!p1@POU4F1!0.65!3.50!POU4F1;;chr8:102504979..102505010,+!p2@GRHL2!0.65!3.50!GRHL2;;chr20:30795511..30795562,-!p1@PLAGL2!0.64!72.15!PLAGL2;;chr12:66218836..66218888,+!p1@HMGA2!0.64!36.62!HMGA2;;chr19:53636125..53636178,-!p1@ZNF415!0.64!10.76!ZNF415;;chr15:41913690..41913753,+!p2@MGA!0.64!8.94!MGA;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.13!HMGA2;;chr20:33413372..33413389,-!p2@NCOA6!0.64!7.01!NCOA6;;chr19:17356189..17356221,-!p2@NR2F6!0.64!5.92!NR2F6;;chr19:12551785..12551823,-!p1@ZNF443!0.64!5.80!ZNF443;;chr10:77161650..77161661,-!p4@ZNF503!0.64!4.96!ZNF503;;chr12:52431016..52431071,+!p4@NR4A1!0.64!4.11!NR4A1;;chr17:53342311..53342400,+!p1@HLF!0.64!3.99!HLF;;chr1:3569072..3569093,+!p1@TP73!0.64!3.38!TP73;;chr21:38071430..38071456,+!p1@SIM2!0.64!3.38!SIM2;;chr14:38064572..38064584,-!p5@FOXA1!0.64!3.38!FOXA1;;chr14:37131058..37131139,+!p1@PAX9!0.63!3.26!PAX9;;chr2:63277978..63277995,+!p2@OTX1!0.63!3.26!OTX1;;chr3:24536485..24536500,-!p3@THRB!0.63!3.26!THRB;;chr9:129376201..129376225,+!p1@LMX1B!0.63!3.26!LMX1B;;chr17:47439437..47439533,-!p1@ZNF652!0.62!30.94!ZNF652;;chr12:80084737..80084763,-!p3@PAWR!0.62!13.78!PAWR;;chr7:64126535..64126559,+!p2@ZNF107!0.62!7.49!ZNF107;;chr8:86089417..86089440,+!p2@E2F5!0.62!7.01!E2F5;;chr19:12512015..12512044,-!p2@ZNF799!0.62!4.96!ZNF799;;chr12:66218003..66218018,+!p9@HMGA2!0.62!3.99!HMGA2;;c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F;;chr12:80084279..80084293,-!p8@PAWR!0.22!1.69!PAWR;;chr22:42269885..42269899,+!p4@SREBF2!0.22!1.45!SREBF2;;chr16:67881588..67881612,-!p2@CENPT!0.22!1.21!CENPT;;chrX:131624020..131624048,-!p9@MBNL3!0.22!0.97!MBNL3;;chr12:53856262..53856278,+!p12@PCBP2!0.22!0.97!PCBP2;;chr6:135502501..135502546,+!p1@MYB!0.22!0.97!MYB;;chr2:25565329..25565342,-!p6@DNMT3A!0.22!0.85!DNMT3A;;chr2:187350973..187351072,+!p1@ZC3H15!0.21!129.08!ZC3H15;;chr5:135468516..135468621,+!p1@SMAD5!0.21!55.23!SMAD5;;chr9:133454943..133455020,+!p1@FUBP3!0.21!49.79!FUBP3;;chr17:17740287..17740307,-!p1@SREBF1!0.21!37.83!SREBF1;;chr21:34144024..34144111,-!p1@GCFC1!0.21!30.09!GCFC1;;chr19:23578226..23578285,-!p1@ZNF91!0.21!24.53!ZNF91;;chr12:132628963..132629027,+!p1@NOC4L!0.21!21.03!NOC4L;;chr14:100705140..100705188,+!p2@YY1!0.21!20.67!YY1;;chr17:61920023..61920110,-!p1@SMARCD2!0.21!19.94!SMARCD2;;chr16:3333443..3333545,+!p1@ZNF263!0.21!17.16!ZNF263;;chr1:246729544..246729572,-!p1@TFB2M!0.21!13.66!TFB2M;;chr12:125052112..125052172,-!p2@NCOR2!0.21!12.57!NCOR2;;chr11:118992269..118992334,+!p1@HINFP!0.21!11.84!HINFP;;chr19:44716678..44716732,+!p1@ZNF227!0.21!9.43!ZNF227;;chr5:56247935..56247959,-!p1@MIER3!0.21!7.25!MIER3;;chr17:5015129..5015187,-!p1@ZNF232!0.21!7.25!ZNF232;;chr5:178157651..178157689,-!p1@ZNF354A!0.21!5.32!ZNF354A;;chr1:161015676..161015694,-!p3@USF1!0.21!4.83!USF1;;chr4:47916543..47916580,-!p2@NFXL1!0.21!4.11!NFXL1;;chr15:57210961..57211012,+!p3@TCF12!0.21!3.99!TCF12;;chr19:19779619..19779670,+!p1@ZNF101!0.21!3.38!ZNF101;;chr16:68564003..68564050,+!p2@ZFP90!0.21!3.14!ZFP90;;chr9:137218362..137218385,+!p4@RXRA!0.21!3.14!RXRA;;chr8:128750555..128750609,+!p5@MYC!0.21!2.18!MYC;;chr19:58892390..58892404,-!p1@ZNF837!0.21!2.05!ZNF837;;chr5:124082580..124082603,-!p4@ZNF608!0.21!0.85!ZNF608;;chr15:85144307..85144329,+!p2@ZSCAN2!0.21!0.85!ZSCAN2;;chr11:85376028..85376035,-!p5@CREBZF!0.21!0.73!CREBZF;;chr10:3824125..3824146,-!p12@KLF6!0.21!0.60!KLF6;;chr11:113930401..113930422,+!p3@ZBTB16!0.21!0.60!ZBTB16;;chr11:113930477..113930488,+!p4@ZBTB16!0.21!0.60!ZBTB16;;chr11:2291849..2291858,-!p4@ASCL2!0.21!0.60!ASCL2;;chr11:34642656..34642667,+!p2@EHF!0.21!0.60!EHF;;chr12:52448420..52448460,+!p5@NR4A1!0.21!0.60!NR4A1;;chr12:54378864..54378884,+!p6@HOXC10!0.21!0.60!HOXC10;;chr12:66217414..66217419,+!p25@HMGA2!0.21!0.60!HMGA2;;chr13:41635806..41635828,-!p14@ELF1!0.21!0.60!ELF1;;chr13:73636334..73636351,+!p6@KLF5!0.21!0.60!KLF5;;chr14:37051798..37051831,-!p1@NKX2-8!0.21!0.60!NKX2-8;;chr14:38065203..38065215,-!p9@FOXA1!0.21!0.60!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!0.21!0.60!TFAP2A;;chr6:21594206..21594221,+!p15@SOX4!0.21!0.60!SOX4;;chr7:137565269..137565282,-!p16@CREB3L2!0.21!0.60!CREB3L2;;chr7:27169801..27169844,-!p2@HOXA4!0.21!0.60!HOXA4;;chr7:27196196..27196210,-!p5@HOXA7!0.21!0.60!HOXA7;;chr9:124976328..124976372,-!p2@LHX6!0.21!0.60!LHX6;;chr19:50529329..50529340,+!p6@ZNF473!0.21!0.60!ZNF473;;chr1:161736032..161736035,+!p6@ATF6!0.21!0.60!ATF6;;chr1:164559556..164559568,+!p21@PBX1!0.21!0.60!PBX1;;chr1:209979375..209979386,-!p4@IRF6!0.21!0.60!IRF6;;chr1:214161619..214161629,+!p5@PROX1!0.21!0.60!PROX1;;chr1:3568870..3568881,+!p5@TP73!0.21!0.60!TP73;;chr20:18039673..18039676,-!p4@OVOL2!0.21!0.60!OVOL2;;chrX:24167086..24167111,+!p4@ZFX!0.21!0.60!ZFX;;chr9:126774018..126774055,+!p1@LHX2!0.21!0.60!LHX2;;chrX:47863414..47863425,-!p3@ZNF182!0.21!0.60!ZNF182;;chr17:46667561..46667572,-!p4@HOXB3!0.21!0.60!HOXB3;;chr17:46675619..46675642,-!p5@HOXB6!0.21!0.60!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.21!0.60!HOXB7;;chr17:46691732..46691766,-!p4@HOXB8!0.21!0.60!HOXB8;;chr18:3447536..3447542,+!p23@TGIF1!0.21!0.60!TGIF1;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002231;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11253-116F2 | |id=FF:11253-116F2 | ||
|is_a=EFO:0002091;;FF:0000145 | |is_a=EFO:0002091;;FF:0000145 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10882 | |||
|library_id_phase_based=2:CNhs10882 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11253 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CCGTCC.11253 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11253 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CCGTCC.11253 | |||
|name=Prostate Epithelial Cells (polarized), donor1 | |name=Prostate Epithelial Cells (polarized), donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10882,LSID703,release008,COMPLETED | |profile_hcage=CNhs10882,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
Line 59: | Line 82: | ||
|rna_tube_id=116F2 | |rna_tube_id=116F2 | ||
|rna_weight_ug=96 | |rna_weight_ug=96 | ||
|rnaseq_library_id=SRhi10009.CCGTCC | |||
|sample_age=56 | |sample_age=56 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CS-ABI-3739 | |sample_cell_catalog=CS-ABI-3739 | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 106: | ||
|top_motifs=HNF1A:3.67607455866;HNF4A_NR2F1,2:3.3108832666;SNAI1..3:2.29529856084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.07137913701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.92911780818;ZEB1:1.81066997991;bHLH_family:1.55535612297;FOXA2:1.46039801308;LEF1_TCF7_TCF7L1,2:1.39465993946;NFY{A,B,C}:1.3814973128;LHX3,4:1.35918845656;ESR1:1.32456830006;FOX{F1,F2,J1}:1.29810631691;MYOD1:1.26478997763;ELK1,4_GABP{A,B1}:1.25378036045;E2F1..5:1.1131262924;ESRRA:1.06789106959;RBPJ:1.06770430042;HOX{A6,A7,B6,B7}:1.03290933879;SP1:0.880602523476;ONECUT1,2:0.857497913287;FOXM1:0.835540036351;T:0.716389148317;NRF1:0.668302143997;PBX1:0.665052884662;STAT5{A,B}:0.659634524698;EVI1:0.641729087582;NKX2-3_NKX2-5:0.621171461813;TEAD1:0.620260036562;FOXN1:0.610269698013;RORA:0.603516309574;XCPE1{core}:0.58075337587;TFDP1:0.56778635853;SOX{8,9,10}:0.542729880434;YY1:0.519654145604;TBP:0.475748390316;EN1,2:0.44774471393;GATA6:0.437692773971;LMO2:0.434085691835;NKX3-2:0.409878114676;ZNF143:0.401814106238;FOXQ1:0.392766985177;GFI1:0.328628266479;SOX17:0.29541046087;TBX4,5:0.294550352835;ATF4:0.290414423391;AIRE:0.276081838072;MYB:0.270475336819;PATZ1:0.269906110401;FOXD3:0.266321066112;HLF:0.25543099338;UFEwm:0.253655749488;MED-1{core}:0.23531791582;ALX4:0.234554946251;ARID5B:0.205492637222;STAT1,3:0.198304723938;HIC1:0.184510230463;SREBF1,2:0.179811153976;HES1:0.172985190466;ATF6:0.161427706209;CDX1,2,4:0.151416530109;HOXA9_MEIS1:0.139792487382;MAZ:0.133926962309;RXR{A,B,G}:0.106332304631;RXRA_VDR{dimer}:0.0917821538274;ZNF384:0.0737913270788;FOX{D1,D2}:0.0427724254213;ADNP_IRX_SIX_ZHX:0.0421372525802;TFAP2B:0.0417718764252;TOPORS:0.0256957747304;ZNF148:0.0135794769502;PITX1..3:0.0135642102877;BREu{core}:0.0130951095262;IKZF2:0.00788110916848;FOXP1:-0.00468989087062;NR6A1:-0.0112874508789;EBF1:-0.0161072120841;HAND1,2:-0.0460945551586;PAX5:-0.0551775137524;TFAP2{A,C}:-0.0581924068351;MTE{core}:-0.05930233772;ZFP161:-0.0934112233487;NR5A1,2:-0.103194126308;PDX1:-0.111852151388;HSF1,2:-0.113882256006;IKZF1:-0.121470850611;VSX1,2:-0.128109401503;CEBPA,B_DDIT3:-0.149951432394;PAX3,7:-0.154577604222;KLF4:-0.157439188312;POU6F1:-0.160856121571;SPZ1:-0.162341839654;CRX:-0.167038691991;PAX1,9:-0.173953022604;HOX{A4,D4}:-0.201382020488;HOX{A5,B5}:-0.235111109504;NFIL3:-0.242395473878;MTF1:-0.243476220835;TFCP2:-0.246927303597;NFKB1_REL_RELA:-0.266257925791;FOS_FOS{B,L1}_JUN{B,D}:-0.281383482424;STAT2,4,6:-0.29889774801;NFE2:-0.302907664185;SOX5:-0.304594862256;ZBTB6:-0.318360810757;POU2F1..3:-0.323502202851;PAX4:-0.34768221565;CUX2:-0.350178080125;CDC5L:-0.350842856517;NHLH1,2:-0.353792060474;ELF1,2,4:-0.364915839581;FOXO1,3,4:-0.367852451557;TEF:-0.370990271293;JUN:-0.37901820213;REST:-0.382161085104;FOSL2:-0.382542265131;RREB1:-0.400403467827;ATF2:-0.405296390229;SOX2:-0.416297566573;OCT4_SOX2{dimer}:-0.418015720422;ATF5_CREB3:-0.419235451492;EGR1..3:-0.443360263783;NR3C1:-0.443962585016;XBP1:-0.448801874971;PPARG:-0.452980915911;PAX2:-0.475639784605;BACH2:-0.482342671828;MYBL2:-0.485442151554;POU1F1:-0.510734869495;TP53:-0.572225248498;MYFfamily:-0.575432609327;HMGA1,2:-0.57556494568;SPI1:-0.609068925283;DMAP1_NCOR{1,2}_SMARC:-0.611496118189;PAX8:-0.6168376728;PRDM1:-0.629466089874;MAFB:-0.633180153539;TLX2:-0.635168981778;GTF2A1,2:-0.63736190212;SPIB:-0.640128742299;NFE2L2:-0.645924309137;DBP:-0.648859325709;NR1H4:-0.662259272483;POU3F1..4:-0.671970468756;ZIC1..3:-0.678640118192;IRF7:-0.723744788208;FOXL1:-0.729176688954;TFAP4:-0.739044119393;NFIX:-0.753961510331;MEF2{A,B,C,D}:-0.75591626176;FOXP3:-0.758767119086;RUNX1..3:-0.763958761654;GTF2I:-0.777049966679;AR:-0.786452572625;PRRX1,2:-0.797951825449;ZNF238:-0.807496769643;ZBTB16:-0.810320063348;MZF1:-0.829269428989;RFX1:-0.838420812573;AHR_ARNT_ARNT2:-0.844858588898;ZNF423:-0.858109527112;RFX2..5_RFXANK_RFXAP:-0.874085967062;NKX6-1,2:-0.878775915277;GFI1B:-0.889272885655;HIF1A:-0.889744390366;ALX1:-0.890365244177;NANOG:-0.92591406991;IRF1,2:-0.93980073757;SRF:-0.940820329206;FOX{I1,J2}:-1.02045370568;ETS1,2:-1.02573467004;TAL1_TCF{3,4,12}:-1.03755115681;NKX2-2,8:-1.0462370962;GLI1..3:-1.07929505369;CREB1:-1.10508369141;BPTF:-1.10557098669;POU5F1:-1.11190676481;GATA4:-1.15606557493;NANOG{mouse}:-1.16316997889;NKX2-1,4:-1.17516328506;HBP1_HMGB_SSRP1_UBTF:-1.23718270211;EP300:-1.25675778408;NKX3-1:-1.26107397046;TLX1..3_NFIC{dimer}:-1.2702434675;GZF1:-1.32175316946;HMX1:-1.3290236583;TGIF1:-1.35175474157;NFE2L1:-1.46920208494;PAX6:-1.51853833501;SMAD1..7,9:-1.61754777451;GCM1,2:-1.71874788692;NFATC1..3:-1.78868700668 | |top_motifs=HNF1A:3.67607455866;HNF4A_NR2F1,2:3.3108832666;SNAI1..3:2.29529856084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.07137913701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.92911780818;ZEB1:1.81066997991;bHLH_family:1.55535612297;FOXA2:1.46039801308;LEF1_TCF7_TCF7L1,2:1.39465993946;NFY{A,B,C}:1.3814973128;LHX3,4:1.35918845656;ESR1:1.32456830006;FOX{F1,F2,J1}:1.29810631691;MYOD1:1.26478997763;ELK1,4_GABP{A,B1}:1.25378036045;E2F1..5:1.1131262924;ESRRA:1.06789106959;RBPJ:1.06770430042;HOX{A6,A7,B6,B7}:1.03290933879;SP1:0.880602523476;ONECUT1,2:0.857497913287;FOXM1:0.835540036351;T:0.716389148317;NRF1:0.668302143997;PBX1:0.665052884662;STAT5{A,B}:0.659634524698;EVI1:0.641729087582;NKX2-3_NKX2-5:0.621171461813;TEAD1:0.620260036562;FOXN1:0.610269698013;RORA:0.603516309574;XCPE1{core}:0.58075337587;TFDP1:0.56778635853;SOX{8,9,10}:0.542729880434;YY1:0.519654145604;TBP:0.475748390316;EN1,2:0.44774471393;GATA6:0.437692773971;LMO2:0.434085691835;NKX3-2:0.409878114676;ZNF143:0.401814106238;FOXQ1:0.392766985177;GFI1:0.328628266479;SOX17:0.29541046087;TBX4,5:0.294550352835;ATF4:0.290414423391;AIRE:0.276081838072;MYB:0.270475336819;PATZ1:0.269906110401;FOXD3:0.266321066112;HLF:0.25543099338;UFEwm:0.253655749488;MED-1{core}:0.23531791582;ALX4:0.234554946251;ARID5B:0.205492637222;STAT1,3:0.198304723938;HIC1:0.184510230463;SREBF1,2:0.179811153976;HES1:0.172985190466;ATF6:0.161427706209;CDX1,2,4:0.151416530109;HOXA9_MEIS1:0.139792487382;MAZ:0.133926962309;RXR{A,B,G}:0.106332304631;RXRA_VDR{dimer}:0.0917821538274;ZNF384:0.0737913270788;FOX{D1,D2}:0.0427724254213;ADNP_IRX_SIX_ZHX:0.0421372525802;TFAP2B:0.0417718764252;TOPORS:0.0256957747304;ZNF148:0.0135794769502;PITX1..3:0.0135642102877;BREu{core}:0.0130951095262;IKZF2:0.00788110916848;FOXP1:-0.00468989087062;NR6A1:-0.0112874508789;EBF1:-0.0161072120841;HAND1,2:-0.0460945551586;PAX5:-0.0551775137524;TFAP2{A,C}:-0.0581924068351;MTE{core}:-0.05930233772;ZFP161:-0.0934112233487;NR5A1,2:-0.103194126308;PDX1:-0.111852151388;HSF1,2:-0.113882256006;IKZF1:-0.121470850611;VSX1,2:-0.128109401503;CEBPA,B_DDIT3:-0.149951432394;PAX3,7:-0.154577604222;KLF4:-0.157439188312;POU6F1:-0.160856121571;SPZ1:-0.162341839654;CRX:-0.167038691991;PAX1,9:-0.173953022604;HOX{A4,D4}:-0.201382020488;HOX{A5,B5}:-0.235111109504;NFIL3:-0.242395473878;MTF1:-0.243476220835;TFCP2:-0.246927303597;NFKB1_REL_RELA:-0.266257925791;FOS_FOS{B,L1}_JUN{B,D}:-0.281383482424;STAT2,4,6:-0.29889774801;NFE2:-0.302907664185;SOX5:-0.304594862256;ZBTB6:-0.318360810757;POU2F1..3:-0.323502202851;PAX4:-0.34768221565;CUX2:-0.350178080125;CDC5L:-0.350842856517;NHLH1,2:-0.353792060474;ELF1,2,4:-0.364915839581;FOXO1,3,4:-0.367852451557;TEF:-0.370990271293;JUN:-0.37901820213;REST:-0.382161085104;FOSL2:-0.382542265131;RREB1:-0.400403467827;ATF2:-0.405296390229;SOX2:-0.416297566573;OCT4_SOX2{dimer}:-0.418015720422;ATF5_CREB3:-0.419235451492;EGR1..3:-0.443360263783;NR3C1:-0.443962585016;XBP1:-0.448801874971;PPARG:-0.452980915911;PAX2:-0.475639784605;BACH2:-0.482342671828;MYBL2:-0.485442151554;POU1F1:-0.510734869495;TP53:-0.572225248498;MYFfamily:-0.575432609327;HMGA1,2:-0.57556494568;SPI1:-0.609068925283;DMAP1_NCOR{1,2}_SMARC:-0.611496118189;PAX8:-0.6168376728;PRDM1:-0.629466089874;MAFB:-0.633180153539;TLX2:-0.635168981778;GTF2A1,2:-0.63736190212;SPIB:-0.640128742299;NFE2L2:-0.645924309137;DBP:-0.648859325709;NR1H4:-0.662259272483;POU3F1..4:-0.671970468756;ZIC1..3:-0.678640118192;IRF7:-0.723744788208;FOXL1:-0.729176688954;TFAP4:-0.739044119393;NFIX:-0.753961510331;MEF2{A,B,C,D}:-0.75591626176;FOXP3:-0.758767119086;RUNX1..3:-0.763958761654;GTF2I:-0.777049966679;AR:-0.786452572625;PRRX1,2:-0.797951825449;ZNF238:-0.807496769643;ZBTB16:-0.810320063348;MZF1:-0.829269428989;RFX1:-0.838420812573;AHR_ARNT_ARNT2:-0.844858588898;ZNF423:-0.858109527112;RFX2..5_RFXANK_RFXAP:-0.874085967062;NKX6-1,2:-0.878775915277;GFI1B:-0.889272885655;HIF1A:-0.889744390366;ALX1:-0.890365244177;NANOG:-0.92591406991;IRF1,2:-0.93980073757;SRF:-0.940820329206;FOX{I1,J2}:-1.02045370568;ETS1,2:-1.02573467004;TAL1_TCF{3,4,12}:-1.03755115681;NKX2-2,8:-1.0462370962;GLI1..3:-1.07929505369;CREB1:-1.10508369141;BPTF:-1.10557098669;POU5F1:-1.11190676481;GATA4:-1.15606557493;NANOG{mouse}:-1.16316997889;NKX2-1,4:-1.17516328506;HBP1_HMGB_SSRP1_UBTF:-1.23718270211;EP300:-1.25675778408;NKX3-1:-1.26107397046;TLX1..3_NFIC{dimer}:-1.2702434675;GZF1:-1.32175316946;HMX1:-1.3290236583;TGIF1:-1.35175474157;NFE2L1:-1.46920208494;PAX6:-1.51853833501;SMAD1..7,9:-1.61754777451;GCM1,2:-1.71874788692;NFATC1..3:-1.78868700668 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11253-116F2;search_select_hide=table117:FF:11253-116F2 | |||
}} | }} |
Latest revision as of 16:28, 3 June 2020
Name: | Prostate Epithelial Cells (polarized), donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10882 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10882
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10882
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.357 |
10 | 10 | 0.3 |
100 | 100 | 0.249 |
101 | 101 | 0.448 |
102 | 102 | 0.606 |
103 | 103 | 0.726 |
104 | 104 | 0.673 |
105 | 105 | 0.782 |
106 | 106 | 0.0982 |
107 | 107 | 0.523 |
108 | 108 | 0.935 |
109 | 109 | 0.431 |
11 | 11 | 0.261 |
110 | 110 | 0.328 |
111 | 111 | 0.841 |
112 | 112 | 0.0957 |
113 | 113 | 0.0361 |
114 | 114 | 0.296 |
115 | 115 | 0.627 |
116 | 116 | 0.66 |
117 | 117 | 0.636 |
118 | 118 | 0.333 |
119 | 119 | 0.88 |
12 | 12 | 0.931 |
120 | 120 | 0.247 |
121 | 121 | 0.501 |
122 | 122 | 0.7 |
123 | 123 | 0.0708 |
124 | 124 | 0.871 |
125 | 125 | 0.0128 |
126 | 126 | 0.543 |
127 | 127 | 0.3 |
128 | 128 | 0.022 |
129 | 129 | 0.88 |
13 | 13 | 0.0354 |
130 | 130 | 0.591 |
131 | 131 | 0.058 |
132 | 132 | 0.872 |
133 | 133 | 0.147 |
134 | 134 | 0.0858 |
135 | 135 | 0.0666 |
136 | 136 | 0.0114 |
137 | 137 | 0.00993 |
138 | 138 | 0.0265 |
139 | 139 | 0.0799 |
14 | 14 | 0.243 |
140 | 140 | 0.992 |
141 | 141 | 0.996 |
142 | 142 | 0.736 |
143 | 143 | 0.0113 |
144 | 144 | 0.369 |
145 | 145 | 0.168 |
146 | 146 | 0.518 |
147 | 147 | 0.789 |
148 | 148 | 0.435 |
149 | 149 | 0.963 |
15 | 15 | 0.339 |
150 | 150 | 0.31 |
151 | 151 | 0.656 |
152 | 152 | 0.141 |
153 | 153 | 0.136 |
154 | 154 | 0.0624 |
155 | 155 | 0.0573 |
156 | 156 | 0.581 |
157 | 157 | 0.873 |
158 | 158 | 0.806 |
159 | 159 | 0.532 |
16 | 16 | 0.554 |
160 | 160 | 0.14 |
161 | 161 | 0.641 |
162 | 162 | 0.878 |
163 | 163 | 0.224 |
164 | 164 | 0.934 |
165 | 165 | 0.604 |
166 | 166 | 0.0723 |
167 | 167 | 0.87 |
168 | 168 | 0.506 |
169 | 169 | 0.462 |
17 | 17 | 0.729 |
18 | 18 | 0.0204 |
19 | 19 | 0.32 |
2 | 2 | 0.535 |
20 | 20 | 0.396 |
21 | 21 | 0.421 |
22 | 22 | 0.665 |
23 | 23 | 0.0195 |
24 | 24 | 0.827 |
25 | 25 | 0.782 |
26 | 26 | 0.794 |
27 | 27 | 0.489 |
28 | 28 | 0.711 |
29 | 29 | 0.504 |
3 | 3 | 0.302 |
30 | 30 | 0.682 |
31 | 31 | 0.796 |
32 | 32 | 0.154 |
33 | 33 | 0.908 |
34 | 34 | 0.442 |
35 | 35 | 0.249 |
36 | 36 | 0.893 |
37 | 37 | 0.597 |
38 | 38 | 0.954 |
39 | 39 | 0.415 |
4 | 4 | 0.784 |
40 | 40 | 0.0967 |
41 | 41 | 0.0134 |
42 | 42 | 0.413 |
43 | 43 | 0.14 |
44 | 44 | 0.184 |
45 | 45 | 0.62 |
46 | 46 | 0.434 |
47 | 47 | 0.944 |
48 | 48 | 0.796 |
49 | 49 | 0.197 |
5 | 5 | 0.21 |
50 | 50 | 0.623 |
51 | 51 | 0.985 |
52 | 52 | 0.711 |
53 | 53 | 0.332 |
54 | 54 | 0.994 |
55 | 55 | 0.207 |
56 | 56 | 0.872 |
57 | 57 | 0.343 |
58 | 58 | 0.457 |
59 | 59 | 0.246 |
6 | 6 | 0.492 |
60 | 60 | 0.263 |
61 | 61 | 0.22 |
62 | 62 | 0.233 |
63 | 63 | 0.409 |
64 | 64 | 0.643 |
65 | 65 | 0.148 |
66 | 66 | 0.0234 |
67 | 67 | 0.167 |
68 | 68 | 0.343 |
69 | 69 | 0.275 |
7 | 7 | 0.458 |
70 | 70 | 0.176 |
71 | 71 | 0.296 |
72 | 72 | 0.356 |
73 | 73 | 0.26 |
74 | 74 | 0.0392 |
75 | 75 | 0.518 |
76 | 76 | 0.747 |
77 | 77 | 0.928 |
78 | 78 | 0.0053 |
79 | 79 | 0.304 |
8 | 8 | 0.508 |
80 | 80 | 0.483 |
81 | 81 | 0.144 |
82 | 82 | 0.024 |
83 | 83 | 0.511 |
84 | 84 | 0.347 |
85 | 85 | 0.0687 |
86 | 86 | 0.358 |
87 | 87 | 0.216 |
88 | 88 | 0.894 |
89 | 89 | 0.358 |
9 | 9 | 0.0464 |
90 | 90 | 0.478 |
91 | 91 | 0.00673 |
92 | 92 | 0.102 |
93 | 93 | 0.702 |
94 | 94 | 0.0318 |
95 | 95 | 0.148 |
96 | 96 | 0.0297 |
97 | 97 | 0.904 |
98 | 98 | 0.468 |
99 | 99 | 0.487 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10882
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)