FF:11278-116H9: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005640 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005640 | ||
|HumanCAGEScanFiles=NCig10049;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008404;DRR009276;DRZ000701;DRZ002086;DRZ012051;DRZ013436 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037046;DRR041412;DRZ007054 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000136 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.92!826.63!HAND1;;chr17:7493405..7493419,-!p1@SOX15!2.18!149.44!SOX15;;chr2:19558373..19558392,-!p1@OSR1!1.80!165.51!OSR1;;chr10:8096772..8096787,+!p2@GATA3!1.70!57.90!GATA3;;chr19:46806868..46806883,+!p3@HIF3A!1.69!47.59!HIF3A;;chr1:201979743..201979762,+!p1@ELF3!1.66!44.26!ELF3;;chr19:45579725..45579743,-!p1@ZNF296!1.65!188.55!ZNF296;;chr3:111314186..111314204,-!p1@ZBED2!1.64!42.74!ZBED2;;chr1:38512457..38512474,-!p1@POU3F1!1.63!45.47!POU3F1;;chr1:209979467..209979494,-!p1@IRF6!1.58!40.92!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.22!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.50!30.92!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.49!36.38!GATA3;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.49!HIF3A;;chr11:65554563..65554576,+!p2@OVOL1!1.44!26.68!OVOL1;;chr20:39317868..39317884,-!p1@MAFB!1.40!272.81!MAFB;;chr6:391743..391759,+!p1@IRF4!1.38!22.73!IRF4;;chr5:2751762..2751784,-!p1@IRX2!1.32!20.01!IRX2;;chr4:188916918..188916942,+!p1@ZFP42!1.30!18.79!ZFP42;;chr8:49833978..49833996,-!p1@SNAI2!1.25!335.26!SNAI2;;chr9:110252035..110252057,-!p1@KLF4!1.21!241.59!KLF4;;chr8:49833948..49833973,-!p2@SNAI2!1.21!95.49!SNAI2;;chr4:174451370..174451387,-!p1@HAND2!1.21!15.16!HAND2;;chr17:38256822..38256851,-!p1@NR1D1!1.20!116.10!NR1D1;;chr5:3595961..3595975,+!p3@IRX1!1.19!14.55!IRX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.18!17.88!TFAP2C;;chr16:31076332..31076388,-!p3@ZNF668!1.17!13.64!ZNF668;;chr16:67881588..67881612,-!p2@CENPT!1.16!18.49!CENPT;;chr6:10415276..10415341,-!p2@TFAP2A!1.15!16.07!TFAP2A;;chr5:3595934..3595957,+!p2@IRX1!1.14!12.73!IRX1;;chr4:174450089..174450153,-!p2@HAND2!1.14!12.73!HAND2;;chr10:8095593..8095625,+!p3@GATA3!1.12!14.25!GATA3;;chr11:65554528..65554546,+!p1@OVOL1!1.11!11.82!OVOL1;;chr5:3595977..3595999,+!p1@IRX1!1.11!11.82!IRX1;;chr8:102504979..102505010,+!p2@GRHL2!1.11!11.82!GRHL2;;chr17:45928521..45928539,-!p1@SP6!1.10!11.52!SP6;;chr20:18038521..18038571,-!p1@OVOL2!1.06!10.61!OVOL2;;chr8:102504690..102504704,+!p3@GRHL2!1.06!10.61!GRHL2;;chr18:77155922..77155939,+!p1@NFATC1!1.05!28.19!NFATC1;;chr3:111314230..111314241,-!p2@ZBED2!1.04!10.00!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.03!16.37!MSX2;;chr1:935398..935465,-!p2@HES4!1.02!19.70!HES4;;chr6:85473156..85473210,-!p2@TBX18!1.02!11.52!TBX18;;chr19:17356189..17356221,-!p2@NR2F6!1.00!14.85!NR2F6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.00!9.09!PEG3;;chr6:10412600..10412637,-!p1@TFAP2A!0.99!14.85!TFAP2A;;chr1:212782094..212782109,+!p1@ATF3!0.98!236.44!ATF3;;chr19:46800289..46800327,+!p2@HIF3A!0.98!8.49!HIF3A;;chr2:46524897..46524911,+!p2@EPAS1!0.97!23.95!EPAS1;;chr2:231084820..231084836,-!p5@SP110!0.97!9.70!SP110;;chr1:209979411..209979433,-!p2@IRF6!0.96!8.18!IRF6;;chr11:47236584..47236679,+!p1@DDB2!0.95!89.12!DDB2;;chr6:19837592..19837621,+!p1@ID4!0.95!50.02!ID4;;chr5:153857819..153857824,-!p3@HAND1!0.95!7.88!HAND1;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.88!IRX2;;chr1:6479968..6479986,-!p1@HES2!0.95!7.88!HES2;;chr22:38598086..38598105,+!p1@MAFF!0.93!83.97!MAFF;;chr11:46299539..46299620,+!p2@CREB3L1!0.93!13.03!CREB3L1;;chr5:174151612..174151633,+!p2@MSX2!0.92!7.28!MSX2;;chr1:59249732..59249749,-!p2@JUN!0.90!88.21!JUN;;chr16:29818199..29818216,+!p11@MAZ!0.90!11.52!MAZ;;chr19:45971246..45971265,+!p1@FOSB!0.88!129.44!FOSB;;chr11:46722560..46722595,+!p1@ZNF408!0.88!36.38!ZNF408;;chr13:73633131..73633149,+!p1@KLF5!0.87!73.05!KLF5;;chr14:75988771..75988826,+!p1@BATF!0.87!8.79!BATF;;chr1:26496459..26496470,+!p2@ZNF593!0.86!12.43!ZNF593;;chr16:67867749..67867852,-!p1@CENPT!0.85!147.62!CENPT;;chr3:39195037..39195069,-!p2@CSRNP1!0.84!39.10!CSRNP1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.76!TFAP2A;;chrX:106960285..106960299,-!p1@TSC22D3!0.82!164.30!TSC22D3;;chr2:239148671..239148686,-!p1@HES6!0.79!20.61!HES6;;chr11:113930291..113930339,+!p2@ZBTB16!0.79!8.79!ZBTB16;;chr3:39195139..39195150,-!p3@CSRNP1!0.77!6.37!CSRNP1;;chr17:38256590..38256599,-!p8@NR1D1!0.77!4.85!NR1D1;;chr1:59249707..59249727,-!p1@JUN!0.75!218.55!JUN;;chr3:39195075..39195088,-!p1@CSRNP1!0.75!31.83!CSRNP1;;chr11:113930425..113930471,+!p1@ZBTB16!0.75!6.97!ZBTB16;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.71!MYBL2;;chr9:110250697..110250738,-!p2@KLF4!0.74!5.46!KLF4;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.55!KDM5D;;chr12:132628963..132629027,+!p1@NOC4L!0.73!70.93!NOC4L;;chr3:52001426..52001447,-!p3@PCBP4!0.73!13.34!PCBP4;;chrY:2803415..2803468,+!p1@ZFY!0.72!4.24!ZFY;;chr17:48072574..48072597,-!p1@DLX3!0.72!4.24!DLX3;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.24!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!0.72!4.24!ELF3;;chr1:26496382..26496457,+!p1@ZNF593!0.71!283.12!ZNF593;;chr11:46299199..46299233,+!p1@CREB3L1!0.71!23.64!CREB3L1;;chr20:42295745..42295765,+!p1@MYBL2!0.69!72.45!MYBL2;;chr16:29818160..29818188,+!p6@MAZ!0.69!20.61!MAZ;;chr20:32274150..32274166,-!p2@E2F1!0.69!7.88!E2F1;;chr8:28243813..28243839,-!p4@ZNF395!0.69!7.58!ZNF395;;chr5:3596206..3596210,+!p4@IRX1!0.69!3.94!IRX1;;chr2:16080659..160806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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.92!826.63!HAND1;;chr17:7493405..7493419,-!p1@SOX15!2.18!149.44!SOX15;;chr2:19558373..19558392,-!p1@OSR1!1.80!165.51!OSR1;;chr10:8096772..8096787,+!p2@GATA3!1.70!57.90!GATA3;;chr19:46806868..46806883,+!p3@HIF3A!1.69!47.59!HIF3A;;chr1:201979743..201979762,+!p1@ELF3!1.66!44.26!ELF3;;chr19:45579725..45579743,-!p1@ZNF296!1.65!188.55!ZNF296;;chr3:111314186..111314204,-!p1@ZBED2!1.64!42.74!ZBED2;;chr1:38512457..38512474,-!p1@POU3F1!1.63!45.47!POU3F1;;chr1:209979467..209979494,-!p1@IRF6!1.58!40.92!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.22!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.50!30.92!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.49!36.38!GATA3;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.49!HIF3A;;chr11:65554563..65554576,+!p2@OVOL1!1.44!26.68!OVOL1;;chr20:39317868..39317884,-!p1@MAFB!1.40!272.81!MAFB;;chr6:391743..391759,+!p1@IRF4!1.38!22.73!IRF4;;chr5:2751762..2751784,-!p1@IRX2!1.32!20.01!IRX2;;chr4:188916918..188916942,+!p1@ZFP42!1.30!18.79!ZFP42;;chr8:49833978..49833996,-!p1@SNAI2!1.25!335.26!SNAI2;;chr9:110252035..110252057,-!p1@KLF4!1.21!241.59!KLF4;;chr8:49833948..49833973,-!p2@SNAI2!1.21!95.49!SNAI2;;chr4:174451370..174451387,-!p1@HAND2!1.21!15.16!HAND2;;chr17:38256822..38256851,-!p1@NR1D1!1.20!116.10!NR1D1;;chr5:3595961..3595975,+!p3@IRX1!1.19!14.55!IRX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.18!17.88!TFAP2C;;chr16:31076332..31076388,-!p3@ZNF668!1.17!13.64!ZNF668;;chr16:67881588..67881612,-!p2@CENPT!1.16!18.49!CENPT;;chr6:10415276..10415341,-!p2@TFAP2A!1.15!16.07!TFAP2A;;chr5:3595934..3595957,+!p2@IRX1!1.14!12.73!IRX1;;chr4:174450089..174450153,-!p2@HAND2!1.14!12.73!HAND2;;chr10:8095593..8095625,+!p3@GATA3!1.12!14.25!GATA3;;chr11:65554528..65554546,+!p1@OVOL1!1.11!11.82!OVOL1;;chr5:3595977..3595999,+!p1@IRX1!1.11!11.82!IRX1;;chr8:102504979..102505010,+!p2@GRHL2!1.11!11.82!GRHL2;;chr17:45928521..45928539,-!p1@SP6!1.10!11.52!SP6;;chr20:18038521..18038571,-!p1@OVOL2!1.06!10.61!OVOL2;;chr8:102504690..102504704,+!p3@GRHL2!1.06!10.61!GRHL2;;chr18:77155922..77155939,+!p1@NFATC1!1.05!28.19!NFATC1;;chr3:111314230..111314241,-!p2@ZBED2!1.04!10.00!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.03!16.37!MSX2;;chr1:935398..935465,-!p2@HES4!1.02!19.70!HES4;;chr6:85473156..85473210,-!p2@TBX18!1.02!11.52!TBX18;;chr19:17356189..17356221,-!p2@NR2F6!1.00!14.85!NR2F6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.00!9.09!PEG3;;chr6:10412600..10412637,-!p1@TFAP2A!0.99!14.85!TFAP2A;;chr1:212782094..212782109,+!p1@ATF3!0.98!236.44!ATF3;;chr19:46800289..46800327,+!p2@HIF3A!0.98!8.49!HIF3A;;chr2:46524897..46524911,+!p2@EPAS1!0.97!23.95!EPAS1;;chr2:231084820..231084836,-!p5@SP110!0.97!9.70!SP110;;chr1:209979411..209979433,-!p2@IRF6!0.96!8.18!IRF6;;chr11:47236584..47236679,+!p1@DDB2!0.95!89.12!DDB2;;chr6:19837592..19837621,+!p1@ID4!0.95!50.02!ID4;;chr5:153857819..153857824,-!p3@HAND1!0.95!7.88!HAND1;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.88!IRX2;;chr1:6479968..6479986,-!p1@HES2!0.95!7.88!HES2;;chr22:38598086..38598105,+!p1@MAFF!0.93!83.97!MAFF;;chr11:46299539..46299620,+!p2@CREB3L1!0.93!13.03!CREB3L1;;chr5:174151612..174151633,+!p2@MSX2!0.92!7.28!MSX2;;chr1:59249732..59249749,-!p2@JUN!0.90!88.21!JUN;;chr16:29818199..29818216,+!p11@MAZ!0.90!11.52!MAZ;;chr19:45971246..45971265,+!p1@FOSB!0.88!129.44!FOSB;;chr11:46722560..46722595,+!p1@ZNF408!0.88!36.38!ZNF408;;chr13:73633131..73633149,+!p1@KLF5!0.87!73.05!KLF5;;chr14:75988771..75988826,+!p1@BATF!0.87!8.79!BATF;;chr1:26496459..26496470,+!p2@ZNF593!0.86!12.43!ZNF593;;chr16:67867749..67867852,-!p1@CENPT!0.85!147.62!CENPT;;chr3:39195037..39195069,-!p2@CSRNP1!0.84!39.10!CSRNP1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.76!TFAP2A;;chrX:106960285..106960299,-!p1@TSC22D3!0.82!164.30!TSC22D3;;chr2:239148671..239148686,-!p1@HES6!0.79!20.61!HES6;;chr11:113930291..113930339,+!p2@ZBTB16!0.79!8.79!ZBTB16;;chr3:39195139..39195150,-!p3@CSRNP1!0.77!6.37!CSRNP1;;chr17:38256590..38256599,-!p8@NR1D1!0.77!4.85!NR1D1;;chr1:59249707..59249727,-!p1@JUN!0.75!218.55!JUN;;chr3:39195075..39195088,-!p1@CSRNP1!0.75!31.83!CSRNP1;;chr11:113930425..113930471,+!p1@ZBTB16!0.75!6.97!ZBTB16;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.71!MYBL2;;chr9:110250697..110250738,-!p2@KLF4!0.74!5.46!KLF4;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.55!KDM5D;;chr12:132628963..132629027,+!p1@NOC4L!0.73!70.93!NOC4L;;chr3:52001426..52001447,-!p3@PCBP4!0.73!13.34!PCBP4;;chrY:2803415..2803468,+!p1@ZFY!0.72!4.24!ZFY;;chr17:48072574..48072597,-!p1@DLX3!0.72!4.24!DLX3;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.24!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!0.72!4.24!ELF3;;chr1:26496382..26496457,+!p1@ZNF593!0.71!283.12!ZNF593;;chr11:46299199..46299233,+!p1@CREB3L1!0.71!23.64!CREB3L1;;chr20:42295745..42295765,+!p1@MYBL2!0.69!72.45!MYBL2;;chr16:29818160..29818188,+!p6@MAZ!0.69!20.61!MAZ;;chr20:32274150..32274166,-!p2@E2F1!0.69!7.88!E2F1;;chr8:28243813..28243839,-!p4@ZNF395!0.69!7.58!ZNF395;;chr5:3596206..3596210,+!p4@IRX1!0.69!3.94!IRX1;;chr2:16080659..160806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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002577;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001987;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11278-116H9 | |id=FF:11278-116H9 | ||
|is_a=EFO:0002091;;FF:0000136 | |is_a=EFO:0002091;;FF:0000136 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11079 | |||
|library_id_phase_based=2:CNhs11079 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11278 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.CCGTCC.11278 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11278 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.CCGTCC.11278 | |||
|name=Placental Epithelial Cells, donor1 | |name=Placental Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=NCig10049,,, | |profile_cagescan=NCig10049,,, | ||
|profile_hcage=CNhs11079,LSID724,release008,COMPLETED | |profile_hcage=CNhs11079,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.00605968836820808,0.134912386120415,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127569976225871,0,0,0,0,0,-0.0979578962680575,0,0,0.147936396795436,0,0,0,0,0,0,0,0,0,0,0,0,0.235124111947323,0,0,0,0,0,0,0,0,0.148227628074764,0,0,0,0,0,-0.014198754555016,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.205814531197559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.274898025583436,0,0,0,-0.0262455025957601,-0.0707509094087195,0.0574934668214365,0.114986933642873,0.0574934668214365,0,0.0169515824051669,0.0219235316193208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0319047795758299,0.187297900228071,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA230-R10f | |rna_catalog_number=CA230-R10f | ||
| Line 57: | Line 82: | ||
|rna_tube_id=116H9 | |rna_tube_id=116H9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=PPARG:2.35988759038;TBP:1.95072074985;TP53:1.83035501372;ELK1,4_GABP{A,B1}:1.64099697063;bHLH_family:1.49499448189;ZEB1:1.27298165754;XCPE1{core}:1.26824025343;FOXM1:1.24701733459;HOX{A5,B5}:1.15471445223;GFI1:1.13372916386;TFAP2{A,C}:1.05766097854;SNAI1..3:1.04451171866;ZNF148:1.02669573054;SP1:1.01532210814;HAND1,2:0.967153517133;POU2F1..3:0.960361226202;ESRRA:0.929743483771;EP300:0.920017847384;GCM1,2:0.91075064108;IKZF1:0.891336602759;YY1:0.883821956067;PAX5:0.875579144386;ZNF384:0.872147694901;TEAD1:0.83361386881;RXR{A,B,G}:0.824625977801;ZIC1..3:0.819464852392;GTF2A1,2:0.81468600413;RORA:0.787191356565;ZNF143:0.751816805934;NR5A1,2:0.745689533388;JUN:0.741596463961;NKX2-3_NKX2-5:0.741406707892;ESR1:0.652840257317;STAT5{A,B}:0.634959584104;VSX1,2:0.631737914479;NFIL3:0.622285791002;HES1:0.614585719128;HMX1:0.604595418337;FOXL1:0.595409765027;GLI1..3:0.594809680353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.590121990723;PAX1,9:0.581992189467;NFY{A,B,C}:0.581671239927;HSF1,2:0.579376888226;ZNF423:0.575459689996;TFCP2:0.561123562469;ZBTB6:0.554695255107;BACH2:0.542591451268;FOS_FOS{B,L1}_JUN{B,D}:0.528132788837;ATF4:0.519879539495;TBX4,5:0.513653604496;ADNP_IRX_SIX_ZHX:0.48425800881;PBX1:0.469101616999;MYOD1:0.459749299741;ARID5B:0.456921028381;NR3C1:0.438515719995;POU3F1..4:0.43383775273;HIF1A:0.414821221061;ZNF238:0.391465970328;NR1H4:0.366860871678;E2F1..5:0.358629299792;POU6F1:0.335855357315;LEF1_TCF7_TCF7L1,2:0.324945951977;AR:0.292208399985;ONECUT1,2:0.280402570994;POU1F1:0.258893131326;SOX{8,9,10}:0.255055609809;MAZ:0.233916289708;PAX8:0.221303838747;NKX2-1,4:0.221036845474;NFE2:0.218659044261;FOSL2:0.21005255786;EBF1:0.16589561885;SOX17:0.135510809752;RBPJ:0.118878643671;CRX:0.105858870979;EN1,2:0.0796566285478;STAT1,3:0.0676869366143;GZF1:0.0570865790556;LHX3,4:0.0322809058711;CREB1:0.02625734903;FOXQ1:0.0238215922241;HOX{A4,D4}:0.0167312321336;TLX1..3_NFIC{dimer}:0.0113906439262;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00150669412431;HOX{A6,A7,B6,B7}:-0.00843292124654;SOX5:-0.0123918914029;TFAP4:-0.0151194187487;FOX{I1,J2}:-0.0159416920643;HOXA9_MEIS1:-0.0257949461922;FOX{F1,F2,J1}:-0.0285380604821;NKX2-2,8:-0.0384594764151;HLF:-0.0416326207312;NANOG:-0.0563206960152;NFKB1_REL_RELA:-0.0903257623096;RXRA_VDR{dimer}:-0.0936833940155;MTF1:-0.100345548229;HNF1A:-0.116072173737;FOXN1:-0.116224921962;MYB:-0.121748945801;GATA6:-0.129836349031;PAX2:-0.141386766555;SPZ1:-0.157661385112;NRF1:-0.166392255251;UFEwm:-0.171635475506;NFIX:-0.20088420641;HIC1:-0.200997351479;HNF4A_NR2F1,2:-0.217283532957;CDC5L:-0.22405477373;NFE2L2:-0.227448348938;SREBF1,2:-0.227915026024;REST:-0.242779145649;TFDP1:-0.24988150078;MEF2{A,B,C,D}:-0.279689365801;OCT4_SOX2{dimer}:-0.28609173146;MED-1{core}:-0.29839019442;TFAP2B:-0.313489130986;ATF5_CREB3:-0.359750721282;ELF1,2,4:-0.360639047769;RFX1:-0.362015714129;KLF4:-0.383085038711;XBP1:-0.391919648566;GTF2I:-0.392910487214;RREB1:-0.402472749222;TEF:-0.404745785045;NR6A1:-0.410160102388;RUNX1..3:-0.413518840662;PAX4:-0.436391561962;STAT2,4,6:-0.440455894451;CEBPA,B_DDIT3:-0.44549673647;ATF2:-0.476966150129;ETS1,2:-0.517572235651;MYBL2:-0.523703710604;SPIB:-0.527635330749;FOXO1,3,4:-0.528535922073;SMAD1..7,9:-0.534194748776;PITX1..3:-0.540804766329;SPI1:-0.543466642525;NHLH1,2:-0.554036530384;GFI1B:-0.575314382675;CUX2:-0.575700847027;PATZ1:-0.579734348365;SRF:-0.597768148952;NKX3-2:-0.608191941874;ATF6:-0.633941967111;PRRX1,2:-0.640871352777;MAFB:-0.687580699618;PAX3,7:-0.708909454322;PAX6:-0.717462688122;FOXA2:-0.719504399127;SOX2:-0.724504278333;TOPORS:-0.745007309168;AIRE:-0.757166436667;LMO2:-0.817796990446;NFE2L1:-0.889676804495;MYFfamily:-0.919966621857;PDX1:-0.937205318124;MZF1:-0.939355753312;IRF7:-0.94806281725;FOXP3:-0.953086194502;BPTF:-0.962568366612;MTE{core}:-0.969085813193;ALX1:-0.983008098087;DBP:-0.994040938646;TGIF1:-1.01963968822;EVI1:-1.02855685374;FOX{D1,D2}:-1.03086425567;EGR1..3:-1.04506461744;RFX2..5_RFXANK_RFXAP:-1.05307425547;TLX2:-1.06372037303;NFATC1..3:-1.07443688245;PRDM1:-1.08496964466;BREu{core}:-1.09985855631;FOXP1:-1.1389798167;HMGA1,2:-1.14802088767;GATA4:-1.19499803081;DMAP1_NCOR{1,2}_SMARC:-1.23798831277;IRF1,2:-1.2395814716;TAL1_TCF{3,4,12}:-1.29975996753;T:-1.40976132268;NANOG{mouse}:-1.46156679609;FOXD3:-1.4830969712;IKZF2:-1.58876612379;CDX1,2,4:-1.60128493744;ZFP161:-1.64215035876;ALX4:-1.66916465466;AHR_ARNT_ARNT2:-1.70106264236;HBP1_HMGB_SSRP1_UBTF:-1.9139872863;NKX3-1:-1.94012004909;POU5F1:-2.08084282198;NKX6-1,2:-2.18457411933;ZBTB16:-2.20875591413 | |top_motifs=PPARG:2.35988759038;TBP:1.95072074985;TP53:1.83035501372;ELK1,4_GABP{A,B1}:1.64099697063;bHLH_family:1.49499448189;ZEB1:1.27298165754;XCPE1{core}:1.26824025343;FOXM1:1.24701733459;HOX{A5,B5}:1.15471445223;GFI1:1.13372916386;TFAP2{A,C}:1.05766097854;SNAI1..3:1.04451171866;ZNF148:1.02669573054;SP1:1.01532210814;HAND1,2:0.967153517133;POU2F1..3:0.960361226202;ESRRA:0.929743483771;EP300:0.920017847384;GCM1,2:0.91075064108;IKZF1:0.891336602759;YY1:0.883821956067;PAX5:0.875579144386;ZNF384:0.872147694901;TEAD1:0.83361386881;RXR{A,B,G}:0.824625977801;ZIC1..3:0.819464852392;GTF2A1,2:0.81468600413;RORA:0.787191356565;ZNF143:0.751816805934;NR5A1,2:0.745689533388;JUN:0.741596463961;NKX2-3_NKX2-5:0.741406707892;ESR1:0.652840257317;STAT5{A,B}:0.634959584104;VSX1,2:0.631737914479;NFIL3:0.622285791002;HES1:0.614585719128;HMX1:0.604595418337;FOXL1:0.595409765027;GLI1..3:0.594809680353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.590121990723;PAX1,9:0.581992189467;NFY{A,B,C}:0.581671239927;HSF1,2:0.579376888226;ZNF423:0.575459689996;TFCP2:0.561123562469;ZBTB6:0.554695255107;BACH2:0.542591451268;FOS_FOS{B,L1}_JUN{B,D}:0.528132788837;ATF4:0.519879539495;TBX4,5:0.513653604496;ADNP_IRX_SIX_ZHX:0.48425800881;PBX1:0.469101616999;MYOD1:0.459749299741;ARID5B:0.456921028381;NR3C1:0.438515719995;POU3F1..4:0.43383775273;HIF1A:0.414821221061;ZNF238:0.391465970328;NR1H4:0.366860871678;E2F1..5:0.358629299792;POU6F1:0.335855357315;LEF1_TCF7_TCF7L1,2:0.324945951977;AR:0.292208399985;ONECUT1,2:0.280402570994;POU1F1:0.258893131326;SOX{8,9,10}:0.255055609809;MAZ:0.233916289708;PAX8:0.221303838747;NKX2-1,4:0.221036845474;NFE2:0.218659044261;FOSL2:0.21005255786;EBF1:0.16589561885;SOX17:0.135510809752;RBPJ:0.118878643671;CRX:0.105858870979;EN1,2:0.0796566285478;STAT1,3:0.0676869366143;GZF1:0.0570865790556;LHX3,4:0.0322809058711;CREB1:0.02625734903;FOXQ1:0.0238215922241;HOX{A4,D4}:0.0167312321336;TLX1..3_NFIC{dimer}:0.0113906439262;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00150669412431;HOX{A6,A7,B6,B7}:-0.00843292124654;SOX5:-0.0123918914029;TFAP4:-0.0151194187487;FOX{I1,J2}:-0.0159416920643;HOXA9_MEIS1:-0.0257949461922;FOX{F1,F2,J1}:-0.0285380604821;NKX2-2,8:-0.0384594764151;HLF:-0.0416326207312;NANOG:-0.0563206960152;NFKB1_REL_RELA:-0.0903257623096;RXRA_VDR{dimer}:-0.0936833940155;MTF1:-0.100345548229;HNF1A:-0.116072173737;FOXN1:-0.116224921962;MYB:-0.121748945801;GATA6:-0.129836349031;PAX2:-0.141386766555;SPZ1:-0.157661385112;NRF1:-0.166392255251;UFEwm:-0.171635475506;NFIX:-0.20088420641;HIC1:-0.200997351479;HNF4A_NR2F1,2:-0.217283532957;CDC5L:-0.22405477373;NFE2L2:-0.227448348938;SREBF1,2:-0.227915026024;REST:-0.242779145649;TFDP1:-0.24988150078;MEF2{A,B,C,D}:-0.279689365801;OCT4_SOX2{dimer}:-0.28609173146;MED-1{core}:-0.29839019442;TFAP2B:-0.313489130986;ATF5_CREB3:-0.359750721282;ELF1,2,4:-0.360639047769;RFX1:-0.362015714129;KLF4:-0.383085038711;XBP1:-0.391919648566;GTF2I:-0.392910487214;RREB1:-0.402472749222;TEF:-0.404745785045;NR6A1:-0.410160102388;RUNX1..3:-0.413518840662;PAX4:-0.436391561962;STAT2,4,6:-0.440455894451;CEBPA,B_DDIT3:-0.44549673647;ATF2:-0.476966150129;ETS1,2:-0.517572235651;MYBL2:-0.523703710604;SPIB:-0.527635330749;FOXO1,3,4:-0.528535922073;SMAD1..7,9:-0.534194748776;PITX1..3:-0.540804766329;SPI1:-0.543466642525;NHLH1,2:-0.554036530384;GFI1B:-0.575314382675;CUX2:-0.575700847027;PATZ1:-0.579734348365;SRF:-0.597768148952;NKX3-2:-0.608191941874;ATF6:-0.633941967111;PRRX1,2:-0.640871352777;MAFB:-0.687580699618;PAX3,7:-0.708909454322;PAX6:-0.717462688122;FOXA2:-0.719504399127;SOX2:-0.724504278333;TOPORS:-0.745007309168;AIRE:-0.757166436667;LMO2:-0.817796990446;NFE2L1:-0.889676804495;MYFfamily:-0.919966621857;PDX1:-0.937205318124;MZF1:-0.939355753312;IRF7:-0.94806281725;FOXP3:-0.953086194502;BPTF:-0.962568366612;MTE{core}:-0.969085813193;ALX1:-0.983008098087;DBP:-0.994040938646;TGIF1:-1.01963968822;EVI1:-1.02855685374;FOX{D1,D2}:-1.03086425567;EGR1..3:-1.04506461744;RFX2..5_RFXANK_RFXAP:-1.05307425547;TLX2:-1.06372037303;NFATC1..3:-1.07443688245;PRDM1:-1.08496964466;BREu{core}:-1.09985855631;FOXP1:-1.1389798167;HMGA1,2:-1.14802088767;GATA4:-1.19499803081;DMAP1_NCOR{1,2}_SMARC:-1.23798831277;IRF1,2:-1.2395814716;TAL1_TCF{3,4,12}:-1.29975996753;T:-1.40976132268;NANOG{mouse}:-1.46156679609;FOXD3:-1.4830969712;IKZF2:-1.58876612379;CDX1,2,4:-1.60128493744;ZFP161:-1.64215035876;ALX4:-1.66916465466;AHR_ARNT_ARNT2:-1.70106264236;HBP1_HMGB_SSRP1_UBTF:-1.9139872863;NKX3-1:-1.94012004909;POU5F1:-2.08084282198;NKX6-1,2:-2.18457411933;ZBTB16:-2.20875591413 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11278-116H9;search_select_hide=table117:FF:11278-116H9 | |||
}} | }} | ||
Latest revision as of 16:30, 3 June 2020
| Name: | Placental Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11079 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11079
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11079
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.828 |
| 10 | 10 | 0.886 |
| 100 | 100 | 0.145 |
| 101 | 101 | 0.0839 |
| 102 | 102 | 0.127 |
| 103 | 103 | 0.397 |
| 104 | 104 | 0.48 |
| 105 | 105 | 0.109 |
| 106 | 106 | 0.228 |
| 107 | 107 | 0.909 |
| 108 | 108 | 0.807 |
| 109 | 109 | 4.62919e-5 |
| 11 | 11 | 0.437 |
| 110 | 110 | 0.119 |
| 111 | 111 | 0.572 |
| 112 | 112 | 0.847 |
| 113 | 113 | 0.775 |
| 114 | 114 | 0.665 |
| 115 | 115 | 0.428 |
| 116 | 116 | 0.31 |
| 117 | 117 | 0.0501 |
| 118 | 118 | 0.13 |
| 119 | 119 | 0.396 |
| 12 | 12 | 0.465 |
| 120 | 120 | 0.128 |
| 121 | 121 | 0.158 |
| 122 | 122 | 0.00235 |
| 123 | 123 | 0.0128 |
| 124 | 124 | 0.21 |
| 125 | 125 | 0.68 |
| 126 | 126 | 0.445 |
| 127 | 127 | 0.756 |
| 128 | 128 | 0.552 |
| 129 | 129 | 0.292 |
| 13 | 13 | 0.00778 |
| 130 | 130 | 0.23 |
| 131 | 131 | 0.148 |
| 132 | 132 | 0.964 |
| 133 | 133 | 0.139 |
| 134 | 134 | 0.17 |
| 135 | 135 | 0.568 |
| 136 | 136 | 0.012 |
| 137 | 137 | 0.062 |
| 138 | 138 | 0.0962 |
| 139 | 139 | 0.565 |
| 14 | 14 | 0.892 |
| 140 | 140 | 0.912 |
| 141 | 141 | 0.506 |
| 142 | 142 | 0.162 |
| 143 | 143 | 0.818 |
| 144 | 144 | 0.967 |
| 145 | 145 | 0.877 |
| 146 | 146 | 0.26 |
| 147 | 147 | 0.709 |
| 148 | 148 | 0.00769 |
| 149 | 149 | 0.552 |
| 15 | 15 | 0.86 |
| 150 | 150 | 0.297 |
| 151 | 151 | 0.482 |
| 152 | 152 | 0.0315 |
| 153 | 153 | 0.0355 |
| 154 | 154 | 0.235 |
| 155 | 155 | 0.0655 |
| 156 | 156 | 0.0149 |
| 157 | 157 | 0.281 |
| 158 | 158 | 0.656 |
| 159 | 159 | 0.964 |
| 16 | 16 | 0.245 |
| 160 | 160 | 0.15 |
| 161 | 161 | 0.0679 |
| 162 | 162 | 0.901 |
| 163 | 163 | 0.767 |
| 164 | 164 | 0.312 |
| 165 | 165 | 0.702 |
| 166 | 166 | 0.114 |
| 167 | 167 | 0.432 |
| 168 | 168 | 0.963 |
| 169 | 169 | 0.0805 |
| 17 | 17 | 0.169 |
| 18 | 18 | 0.834 |
| 19 | 19 | 0.743 |
| 2 | 2 | 0.251 |
| 20 | 20 | 0.113 |
| 21 | 21 | 0.569 |
| 22 | 22 | 0.0774 |
| 23 | 23 | 0.198 |
| 24 | 24 | 0.264 |
| 25 | 25 | 0.736 |
| 26 | 26 | 0.272 |
| 27 | 27 | 0.405 |
| 28 | 28 | 0.94 |
| 29 | 29 | 0.0243 |
| 3 | 3 | 0.877 |
| 30 | 30 | 0.091 |
| 31 | 31 | 0.476 |
| 32 | 32 | 0.542 |
| 33 | 33 | 0.0857 |
| 34 | 34 | 0.849 |
| 35 | 35 | 0.16 |
| 36 | 36 | 0.448 |
| 37 | 37 | 0.128 |
| 38 | 38 | 0.463 |
| 39 | 39 | 0.242 |
| 4 | 4 | 0.511 |
| 40 | 40 | 6.82331e-4 |
| 41 | 41 | 0.769 |
| 42 | 42 | 0.943 |
| 43 | 43 | 0.738 |
| 44 | 44 | 0.97 |
| 45 | 45 | 0.141 |
| 46 | 46 | 0.897 |
| 47 | 47 | 0.542 |
| 48 | 48 | 0.218 |
| 49 | 49 | 0.893 |
| 5 | 5 | 0.415 |
| 50 | 50 | 0.365 |
| 51 | 51 | 0.561 |
| 52 | 52 | 0.72 |
| 53 | 53 | 0.27 |
| 54 | 54 | 0.961 |
| 55 | 55 | 0.49 |
| 56 | 56 | 0.723 |
| 57 | 57 | 0.625 |
| 58 | 58 | 0.575 |
| 59 | 59 | 0.133 |
| 6 | 6 | 0.898 |
| 60 | 60 | 0.699 |
| 61 | 61 | 0.389 |
| 62 | 62 | 0.299 |
| 63 | 63 | 0.824 |
| 64 | 64 | 0.406 |
| 65 | 65 | 0.644 |
| 66 | 66 | 0.0315 |
| 67 | 67 | 0.328 |
| 68 | 68 | 0.306 |
| 69 | 69 | 0.0073 |
| 7 | 7 | 0.244 |
| 70 | 70 | 0.79 |
| 71 | 71 | 0.64 |
| 72 | 72 | 0.533 |
| 73 | 73 | 0.0039 |
| 74 | 74 | 0.0241 |
| 75 | 75 | 0.0985 |
| 76 | 76 | 0.938 |
| 77 | 77 | 0.0634 |
| 78 | 78 | 0.117 |
| 79 | 79 | 0.853 |
| 8 | 8 | 0.974 |
| 80 | 80 | 0.819 |
| 81 | 81 | 0.123 |
| 82 | 82 | 0.857 |
| 83 | 83 | 0.826 |
| 84 | 84 | 0.366 |
| 85 | 85 | 0.997 |
| 86 | 86 | 0.884 |
| 87 | 87 | 0.017 |
| 88 | 88 | 0.372 |
| 89 | 89 | 0.0917 |
| 9 | 9 | 0.719 |
| 90 | 90 | 0.155 |
| 91 | 91 | 0.463 |
| 92 | 92 | 0.0896 |
| 93 | 93 | 0.987 |
| 94 | 94 | 0.993 |
| 95 | 95 | 0.00153 |
| 96 | 96 | 0.678 |
| 97 | 97 | 0.442 |
| 98 | 98 | 0.912 |
| 99 | 99 | 0.0946 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11079
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
