FF:11303-117B7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004968 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008264;DRR009136;DRZ000561;DRZ001946;DRZ011911;DRZ013296 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.17!163.69!PRRX1;;chr10:28034739..28034756,-!p1@MKX!2.10!125.61!MKX;;chr16:86544113..86544145,+!p1@FOXF1!2.04!134.02!FOXF1;;chr9:132427883..132427951,+!p2@PRRX2!1.93!84.81!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.85!89.26!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.84!91.74!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.76!76.65!FOXF2;;chr4:4861385..4861398,+!p1@MSX1!1.64!122.64!MSX1;;chr7:19157248..19157268,-!p1@TWIST1!1.63!110.78!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!200.04!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.58!109.79!TBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!45.25!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.55!106.82!TWIST2;;chr14:61116183..61116208,-!p1@SIX1!1.54!122.89!SIX1;;chr6:134210243..134210257,+!p1@TCF21!1.48!29.18!TCF21;;chr1:170633262..170633285,+!p3@PRRX1!1.45!31.16!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.40!39.81!TCF12;;chr8:72756667..72756736,-!p2@MSC!1.37!34.37!MSC;;chr2:200322654..200322707,-!p2@SATB2!1.37!32.64!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.35!24.48!RUNX2;;chr7:44143925..44143970,+!p1@AEBP1!1.33!437.42!AEBP1;;chr1:170632477..170632506,+!p6@PRRX1!1.32!19.78!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.68!OSR1;;chr17:59477275..59477286,+!p3@TBX2!1.27!23.49!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.26!28.93!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.26!17.31!BARX1;;chr8:72756637..72756664,-!p3@MSC!1.24!18.55!MSC;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.22!TWIST2;;chr2:46524537..46524553,+!p1@EPAS1!1.17!1340.93!EPAS1;;chr2:200323414..200323455,-!p1@SATB2!1.16!28.93!SATB2;;chr1:170632115..170632136,+!p9@PRRX1!1.16!13.35!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.23!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!1.14!30.41!NFATC4;;chr6:1389989..1390019,+!p2@FOXF2!1.13!12.61!FOXF2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.13!FOXD1;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.22!NR4A3;;chr1:170632762..170632786,+!p13@PRRX1!1.09!11.37!PRRX1;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.29!TBX2;;chr8:72756267..72756296,-!p4@MSC!1.08!16.32!MSC;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.13!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.07!19.53!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.87!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!1.07!10.63!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.07!10.63!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.06!10.39!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!1.05!10.14!HEYL;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.64!PAX9;;chr10:28035133..28035148,-!p3@MKX!1.02!9.40!MKX;;chr1:75600067..75600094,+!p2@LHX8!1.02!9.40!LHX8;;chr10:31607702..31607755,+!p3@ZEB1!1.00!10.39!ZEB1;;chr10:131762504..131762555,-!p1@EBF3!1.00!8.90!EBF3;;chr2:46602901..46602926,+!p7@EPAS1!0.99!11.87!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.98!11.13!AEBP1;;chr17:46132044..46132080,+!p4@NFE2L1!0.98!8.65!NFE2L1;;chr12:115122318..115122331,-!p2@TBX3!0.98!8.65!TBX3;;chr5:134369905..134369972,-!p1@PITX1!0.97!12.86!PITX1;;chr1:170632310..170632321,+!p15@PRRX1!0.97!8.41!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.96!26.46!AHRR;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.16!ZFY;;chr13:45151259..45151326,-!p2@TSC22D1!0.94!47.97!TSC22D1;;chr6:1389824..1389840,+!p3@FOXF2!0.94!7.67!FOXF2;;chr11:65687362..65687436,+!p3@DRAP1!0.93!35.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.53!TWIST1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.89!MSC;;chrY:21906594..21906622,-!p1@KDM5D!0.93!7.42!KDM5D;;chr8:99956662..99956684,+!p1@OSR2!0.92!11.62!OSR2;;chr8:72756063..72756125,-!p1@MSC!0.91!14.84!MSC;;chr2:95963052..95963106,+!p1@KCNIP3!0.91!7.17!KCNIP3;;chr1:170632647..170632659,+!p17@PRRX1!0.91!7.17!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.42!GLIS1;;chr7:96654133..96654150,-!p1@DLX5!0.90!6.92!DLX5;;chr10:28035112..28035130,-!p5@MKX!0.90!6.92!MKX;;chr5:72744445..72744466,-!p2@FOXD1!0.89!11.62!FOXD1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.63!ZBTB38;;chr2:172949484..172949522,+!p1@DLX1!0.89!6.68!DLX1;;chr10:28032421..28032494,-!p2@MKX!0.89!6.68!MKX;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.68!PRRX1;;chr12:53625966..53626012,-!p2@RARG!0.87!17.80!RARG;;chr11:46299443..46299459,+!p4@CREB3L1!0.87!6.43!CREB3L1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.12!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.85!27.20!ZNF521;;chr2:46612891..46612907,+!p10@EPAS1!0.84!5.93!EPAS1;;chr12:53625846..53625861,-!p6@RARG!0.84!5.93!RARG;;chr8:60031934..60031986,-!p6@TOX!0.84!5.93!TOX;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.19!HMGA2;;chr10:28035155..28035166,-!p8@MKX!0.83!5.69!MKX;;chr2:191878874..191878938,-!p1@STAT1!0.82!327.88!STAT1;;chr11:12696071..12696086,+!p3@TEAD1!0.82!7.67!TEAD1;;chr13:45150455..45150472,-!p8@TSC22D1!0.81!5.44!TSC22D1;;chr1:170632683..170632696,+!p12@PRRX1!0.81!5.44!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.81!5.44!LHX8;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.44!SIX2;;chr8:72756380..72756427,-!p8@MSC!0.81!5.44!MSC;;chr11:65687158..65687216,+!p4@DRAP1!0.80!33.13!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.79!8.90!MSX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.79!5.19!CREB3L1;;chr11:65687222..65687240,+!p7@DRAP1!0.78!6.68!DRAP1;;chr12:80085061..80085119,-!p6@PAWR!0.77!8.16!PAWR;;chr7:28220198..28220269,-!p2@JAZF1!0.76!46.73!JAZF1;;chr2:172950227..172950249,+!p2@DLX1!0.76!4.70!DLX1;;chr2:46602879..46602899,+!p8@EPAS1!0.75!5.69!EPAS1;;chr22:19748231..19748317,+!p1@TBX1!0.74!4.45!TBX1;;chr2:157189180..157189290,-!p1@NR4A2!0.73!25.47!NR4A2;;chr20:48807615..48807644,+!p6@CEBPB!0.73!7.67!CEBPB;;chr9:102584241..102584261,+!p4@NR4A3!0.73!7.17!NR4A3;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.19!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.72!4.20!RUNX1T1;;chr14:95236440..95236465,-!p1@GSC!0.72!4.20!GSC;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.20!KCNIP3;;chr14:75894714..75894733,+!p1@JDP2!0.71!133.03!JDP2;;chr16:54320101..54320125,-!p4@IRX3!0.71!6.18!IRX3;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.44!STAT1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.25!GLIS2;;chr11:615570..615721,-!p2@IRF7!0.70!8.65!IRF7;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.42!DRAP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.70!6.92!FOXQ1;;chr17:59477266..59477273,+!p6@TBX2!0.70!3.96!TBX2;;chr2:172967276..172967296,-!p3@DLX2!0.70!3.96!DLX2;;chr1:170633194..170633205,+!p18@PRRX1!0.70!3.96!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.70!3.96!PRRX1;;chr6:45390025..45390076,+!p2@RUNX2!0.69!10.39!RUNX2;;chr5:139487608..139487663,+!p3@PURA!0.69!9.15!PURA;;chr19:31840130..31840160,-!p2@TSHZ3!0.69!6.43!TSHZ3;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.46!SREBF1;;chr2:172967621..172967637,-!p1@DLX2!0.68!11.13!DLX2;;chr19:47922750..47922795,-!p1@MEIS3!0.68!6.68!MEIS3;;chr8:48650715..48650735,-!p1@CEBPD!0.67!544.48!CEBPD;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.25!ARID5B;;chr11:12696002..12696022,+!p2@TEAD1!0.67!9.89!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.67!7.67!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!0.67!6.92!ZEB2;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.19!DRAP1;;chr10:28034395..28034404,-!p9@MKX!0.67!3.71!MKX;;chr2:200322229..200322251,-!p3@SATB2!0.67!3.71!SATB2;;chr2:45236579..45236596,-!p2@SIX2!0.67!3.71!SIX2;;chr7:96654026..96654061,-!p2@DLX5!0.67!3.71!DLX5;;chr1:170632583..170632590,+!p26@PRRX1!0.67!3.71!PRRX1;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.71!TCF12;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.64!FOXC2;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.68!NFIX;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.46!ZNF668;;chr10:28034772..28034783,-!p4@MKX!0.65!3.46!MKX;;chr1:170632051..170632081,+!p16@PRRX1!0.65!3.46!PRRX1;;chr5:134369879..134369898,-!p2@PITX1!0.65!3.46!PITX1;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.46!EBF2;;chr8:72756194..72756208,-!p9@MSC!0.65!3.46!MSC;;chr3:71007344..71007348,-!p6@FOXP1!0.64!15.33!FOXP1;;chr11:65667884..65667895,-!p2@FOSL1!0.64!15.08!FOSL1;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.14!GLI3;;chr13:45151403..45151433,-!p5@TSC22D1!0.64!8.16!TSC22D1;;chr3:141105705..141105770,+!p4@ZBTB38!0.64!4.20!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.63!15.83!DRAP1;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr16:54320158..54320200,-!p5@IRX3!0.63!4.95!IRX3;;chr2:46524865..46524870,+!p9@EPAS1!0.63!3.96!EPAS1;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.45!ARNT2;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.45!CEBPG;;chr14:61116168..61116180,-!p2@SIX1!0.62!3.71!SIX1;;chr7:1577899..1577943,+!p3@MAFK!0.62!3.21!MAFK;;chr2:96012353..96012378,+!p4@KCNIP3!0.62!3.21!KCNIP3;;chr1:170632325..170632339,+!p24@PRRX1!0.62!3.21!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.61!21.26!ZEB2;;chr16:54320617..54320643,-!p3@IRX3!0.61!4.20!IRX3;;chr6:35464817..35464894,-!p1@TEAD3!0.60!54.65!TEAD3;;chr2:46612334..46612349,+!p6@EPAS1!0.60!4.20!EPAS1;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.20!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.60!3.21!SHOX2;;chr2:172967242..172967265,-!p2@DLX2!0.60!2.97!DLX2;;chr5:174151612..174151633,+!p2@MSX2!0.60!2.97!MSX2;;chr6:1389871..1389876,+!p4@FOXF2!0.60!2.97!FOXF2;;chr9:102584278..102584285,+!p5@NR4A3!0.60!2.97!NR4A3;;chr11:34642612..34642646,+!p1@EHF!0.60!2.97!EHF;;chr12:80085120..80085156,-!p14@PAWR!0.60!2.97!PAWR;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.97!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.67!TBX3;;chr6:19837592..19837621,+!p1@ID4!0.59!21.26!ID4;;chr16:79634624..79634642,-!p1@MAF!0.59!13.35!MAF;;chr18:3451646..3451691,+!p3@TGIF1!0.59!8.90!TGIF1;;chr8:60031682..60031710,-!p2@TOX!0.59!5.19!TOX;;chr17:46127997..46128015,+!p5@NFE2L1!0.58!4.20!NFE2L1;;chr5:72744562..72744573,-!p3@FOXD1!0.58!3.71!FOXD1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!174.82!NFE2L1;;chr7:28220354..28220441,-!p1@JAZF1!0.57!52.92!JAZF1;;chr10:63809013..63809041,+!p3@ARID5B!0.57!18.55!ARID5B;;chr15:42749722..42749739,-!p2@ZFP106!0.57!5.44!ZFP106;;chr2:119604456..119604501,-!p2@EN1!0.57!2.72!EN1;;chr10:31607811..31607837,+!p6@ZEB1!0.57!2.7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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.17!163.69!PRRX1;;chr10:28034739..28034756,-!p1@MKX!2.10!125.61!MKX;;chr16:86544113..86544145,+!p1@FOXF1!2.04!134.02!FOXF1;;chr9:132427883..132427951,+!p2@PRRX2!1.93!84.81!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.85!89.26!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.84!91.74!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.76!76.65!FOXF2;;chr4:4861385..4861398,+!p1@MSX1!1.64!122.64!MSX1;;chr7:19157248..19157268,-!p1@TWIST1!1.63!110.78!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!200.04!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.58!109.79!TBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!45.25!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.55!106.82!TWIST2;;chr14:61116183..61116208,-!p1@SIX1!1.54!122.89!SIX1;;chr6:134210243..134210257,+!p1@TCF21!1.48!29.18!TCF21;;chr1:170633262..170633285,+!p3@PRRX1!1.45!31.16!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.40!39.81!TCF12;;chr8:72756667..72756736,-!p2@MSC!1.37!34.37!MSC;;chr2:200322654..200322707,-!p2@SATB2!1.37!32.64!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.35!24.48!RUNX2;;chr7:44143925..44143970,+!p1@AEBP1!1.33!437.42!AEBP1;;chr1:170632477..170632506,+!p6@PRRX1!1.32!19.78!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.68!OSR1;;chr17:59477275..59477286,+!p3@TBX2!1.27!23.49!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.26!28.93!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.26!17.31!BARX1;;chr8:72756637..72756664,-!p3@MSC!1.24!18.55!MSC;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.22!TWIST2;;chr2:46524537..46524553,+!p1@EPAS1!1.17!1340.93!EPAS1;;chr2:200323414..200323455,-!p1@SATB2!1.16!28.93!SATB2;;chr1:170632115..170632136,+!p9@PRRX1!1.16!13.35!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.23!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!1.14!30.41!NFATC4;;chr6:1389989..1390019,+!p2@FOXF2!1.13!12.61!FOXF2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.13!FOXD1;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.22!NR4A3;;chr1:170632762..170632786,+!p13@PRRX1!1.09!11.37!PRRX1;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.29!TBX2;;chr8:72756267..72756296,-!p4@MSC!1.08!16.32!MSC;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.13!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.07!19.53!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.87!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!1.07!10.63!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.07!10.63!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.06!10.39!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!1.05!10.14!HEYL;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.64!PAX9;;chr10:28035133..28035148,-!p3@MKX!1.02!9.40!MKX;;chr1:75600067..75600094,+!p2@LHX8!1.02!9.40!LHX8;;chr10:31607702..31607755,+!p3@ZEB1!1.00!10.39!ZEB1;;chr10:131762504..131762555,-!p1@EBF3!1.00!8.90!EBF3;;chr2:46602901..46602926,+!p7@EPAS1!0.99!11.87!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.98!11.13!AEBP1;;chr17:46132044..46132080,+!p4@NFE2L1!0.98!8.65!NFE2L1;;chr12:115122318..115122331,-!p2@TBX3!0.98!8.65!TBX3;;chr5:134369905..134369972,-!p1@PITX1!0.97!12.86!PITX1;;chr1:170632310..170632321,+!p15@PRRX1!0.97!8.41!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.96!26.46!AHRR;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.16!ZFY;;chr13:45151259..45151326,-!p2@TSC22D1!0.94!47.97!TSC22D1;;chr6:1389824..1389840,+!p3@FOXF2!0.94!7.67!FOXF2;;chr11:65687362..65687436,+!p3@DRAP1!0.93!35.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.53!TWIST1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.89!MSC;;chrY:21906594..21906622,-!p1@KDM5D!0.93!7.42!KDM5D;;chr8:99956662..99956684,+!p1@OSR2!0.92!11.62!OSR2;;chr8:72756063..72756125,-!p1@MSC!0.91!14.84!MSC;;chr2:95963052..95963106,+!p1@KCNIP3!0.91!7.17!KCNIP3;;chr1:170632647..170632659,+!p17@PRRX1!0.91!7.17!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.42!GLIS1;;chr7:96654133..96654150,-!p1@DLX5!0.90!6.92!DLX5;;chr10:28035112..28035130,-!p5@MKX!0.90!6.92!MKX;;chr5:72744445..72744466,-!p2@FOXD1!0.89!11.62!FOXD1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.63!ZBTB38;;chr2:172949484..172949522,+!p1@DLX1!0.89!6.68!DLX1;;chr10:28032421..28032494,-!p2@MKX!0.89!6.68!MKX;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.68!PRRX1;;chr12:53625966..53626012,-!p2@RARG!0.87!17.80!RARG;;chr11:46299443..46299459,+!p4@CREB3L1!0.87!6.43!CREB3L1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.12!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.85!27.20!ZNF521;;chr2:46612891..46612907,+!p10@EPAS1!0.84!5.93!EPAS1;;chr12:53625846..53625861,-!p6@RARG!0.84!5.93!RARG;;chr8:60031934..60031986,-!p6@TOX!0.84!5.93!TOX;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.19!HMGA2;;chr10:28035155..28035166,-!p8@MKX!0.83!5.69!MKX;;chr2:191878874..191878938,-!p1@STAT1!0.82!327.88!STAT1;;chr11:12696071..12696086,+!p3@TEAD1!0.82!7.67!TEAD1;;chr13:45150455..45150472,-!p8@TSC22D1!0.81!5.44!TSC22D1;;chr1:170632683..170632696,+!p12@PRRX1!0.81!5.44!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.81!5.44!LHX8;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.44!SIX2;;chr8:72756380..72756427,-!p8@MSC!0.81!5.44!MSC;;chr11:65687158..65687216,+!p4@DRAP1!0.80!33.13!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.79!8.90!MSX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.79!5.19!CREB3L1;;chr11:65687222..65687240,+!p7@DRAP1!0.78!6.68!DRAP1;;chr12:80085061..80085119,-!p6@PAWR!0.77!8.16!PAWR;;chr7:28220198..28220269,-!p2@JAZF1!0.76!46.73!JAZF1;;chr2:172950227..172950249,+!p2@DLX1!0.76!4.70!DLX1;;chr2:46602879..46602899,+!p8@EPAS1!0.75!5.69!EPAS1;;chr22:19748231..19748317,+!p1@TBX1!0.74!4.45!TBX1;;chr2:157189180..157189290,-!p1@NR4A2!0.73!25.47!NR4A2;;chr20:48807615..48807644,+!p6@CEBPB!0.73!7.67!CEBPB;;chr9:102584241..102584261,+!p4@NR4A3!0.73!7.17!NR4A3;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.19!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.72!4.20!RUNX1T1;;chr14:95236440..95236465,-!p1@GSC!0.72!4.20!GSC;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.20!KCNIP3;;chr14:75894714..75894733,+!p1@JDP2!0.71!133.03!JDP2;;chr16:54320101..54320125,-!p4@IRX3!0.71!6.18!IRX3;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.44!STAT1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.25!GLIS2;;chr11:615570..615721,-!p2@IRF7!0.70!8.65!IRF7;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.42!DRAP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.70!6.92!FOXQ1;;chr17:59477266..59477273,+!p6@TBX2!0.70!3.96!TBX2;;chr2:172967276..172967296,-!p3@DLX2!0.70!3.96!DLX2;;chr1:170633194..170633205,+!p18@PRRX1!0.70!3.96!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.70!3.96!PRRX1;;chr6:45390025..45390076,+!p2@RUNX2!0.69!10.39!RUNX2;;chr5:139487608..139487663,+!p3@PURA!0.69!9.15!PURA;;chr19:31840130..31840160,-!p2@TSHZ3!0.69!6.43!TSHZ3;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.46!SREBF1;;chr2:172967621..172967637,-!p1@DLX2!0.68!11.13!DLX2;;chr19:47922750..47922795,-!p1@MEIS3!0.68!6.68!MEIS3;;chr8:48650715..48650735,-!p1@CEBPD!0.67!544.48!CEBPD;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.25!ARID5B;;chr11:12696002..12696022,+!p2@TEAD1!0.67!9.89!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.67!7.67!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!0.67!6.92!ZEB2;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.19!DRAP1;;chr10:28034395..28034404,-!p9@MKX!0.67!3.71!MKX;;chr2:200322229..200322251,-!p3@SATB2!0.67!3.71!SATB2;;chr2:45236579..45236596,-!p2@SIX2!0.67!3.71!SIX2;;chr7:96654026..96654061,-!p2@DLX5!0.67!3.71!DLX5;;chr1:170632583..170632590,+!p26@PRRX1!0.67!3.71!PRRX1;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.71!TCF12;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.64!FOXC2;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.68!NFIX;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.46!ZNF668;;chr10:28034772..28034783,-!p4@MKX!0.65!3.46!MKX;;chr1:170632051..170632081,+!p16@PRRX1!0.65!3.46!PRRX1;;chr5:134369879..134369898,-!p2@PITX1!0.65!3.46!PITX1;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.46!EBF2;;chr8:72756194..72756208,-!p9@MSC!0.65!3.46!MSC;;chr3:71007344..71007348,-!p6@FOXP1!0.64!15.33!FOXP1;;chr11:65667884..65667895,-!p2@FOSL1!0.64!15.08!FOSL1;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.14!GLI3;;chr13:45151403..45151433,-!p5@TSC22D1!0.64!8.16!TSC22D1;;chr3:141105705..141105770,+!p4@ZBTB38!0.64!4.20!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.63!15.83!DRAP1;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr16:54320158..54320200,-!p5@IRX3!0.63!4.95!IRX3;;chr2:46524865..46524870,+!p9@EPAS1!0.63!3.96!EPAS1;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.45!ARNT2;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.45!CEBPG;;chr14:61116168..61116180,-!p2@SIX1!0.62!3.71!SIX1;;chr7:1577899..1577943,+!p3@MAFK!0.62!3.21!MAFK;;chr2:96012353..96012378,+!p4@KCNIP3!0.62!3.21!KCNIP3;;chr1:170632325..170632339,+!p24@PRRX1!0.62!3.21!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.61!21.26!ZEB2;;chr16:54320617..54320643,-!p3@IRX3!0.61!4.20!IRX3;;chr6:35464817..35464894,-!p1@TEAD3!0.60!54.65!TEAD3;;chr2:46612334..46612349,+!p6@EPAS1!0.60!4.20!EPAS1;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.20!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.60!3.21!SHOX2;;chr2:172967242..172967265,-!p2@DLX2!0.60!2.97!DLX2;;chr5:174151612..174151633,+!p2@MSX2!0.60!2.97!MSX2;;chr6:1389871..1389876,+!p4@FOXF2!0.60!2.97!FOXF2;;chr9:102584278..102584285,+!p5@NR4A3!0.60!2.97!NR4A3;;chr11:34642612..34642646,+!p1@EHF!0.60!2.97!EHF;;chr12:80085120..80085156,-!p14@PAWR!0.60!2.97!PAWR;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.97!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.67!TBX3;;chr6:19837592..19837621,+!p1@ID4!0.59!21.26!ID4;;chr16:79634624..79634642,-!p1@MAF!0.59!13.35!MAF;;chr18:3451646..3451691,+!p3@TGIF1!0.59!8.90!TGIF1;;chr8:60031682..60031710,-!p2@TOX!0.59!5.19!TOX;;chr17:46127997..46128015,+!p5@NFE2L1!0.58!4.20!NFE2L1;;chr5:72744562..72744573,-!p3@FOXD1!0.58!3.71!FOXD1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!174.82!NFE2L1;;chr7:28220354..28220441,-!p1@JAZF1!0.57!52.92!JAZF1;;chr10:63809013..63809041,+!p3@ARID5B!0.57!18.55!ARID5B;;chr15:42749722..42749739,-!p2@ZFP106!0.57!5.44!ZFP106;;chr2:119604456..119604501,-!p2@EN1!0.57!2.72!EN1;;chr10:31607811..31607837,+!p6@ZEB1!0.57!2.7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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11303-117B7 | |id=FF:11303-117B7 | ||
|is_a=EFO:0002091;;FF:0000063 | |is_a=EFO:0002091;;FF:0000063 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11952 | |||
|library_id_phase_based=2:CNhs11952 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11303 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11303 | |||
|name=Fibroblast - Gingival, donor5 (GFH3) | |name=Fibroblast - Gingival, donor5 (GFH3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11952,LSID836,release011,COMPLETED | |profile_hcage=CNhs11952,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=18.5856 | |rna_weight_ug=18.5856 | ||
|sample_age=22 | |sample_age=22 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=ESR1:2.51385073123;FOXL1:2.34204297501;ALX4:2.26878128812;UFEwm:2.20299616277;NKX2-2,8:1.79220764054;ZNF238:1.68589181735;RXR{A,B,G}:1.59847237134;TFAP4:1.54188751198;GLI1..3:1.53524945471;PAX1,9:1.53470988622;EVI1:1.52213946846;EBF1:1.46748839727;NKX3-1:1.46094179832;KLF4:1.38988062105;MYBL2:1.33872927736;HMGA1,2:1.33830687267;HES1:1.25104055001;SPZ1:1.21243658876;TFAP2{A,C}:1.12099483623;TFCP2:1.07119963274;MAZ:1.06317002505;TAL1_TCF{3,4,12}:1.05937257389;IRF1,2:1.04810512897;TP53:1.03665158112;PATZ1:1.01255952634;NANOG{mouse}:0.979078307243;NFIX:0.969253245976;TEAD1:0.930997370225;NKX6-1,2:0.918461150725;FOXD3:0.910661495959;ZNF423:0.875885915229;GATA4:0.870638962492;AIRE:0.858169563549;HAND1,2:0.804269907227;GZF1:0.796203478278;TFAP2B:0.792225024965;MTE{core}:0.783445930404;XCPE1{core}:0.747363334838;TFDP1:0.727360847373;PAX5:0.69965832024;NFATC1..3:0.697099902076;FOXO1,3,4:0.689780982821;ATF6:0.682096664502;NFE2L1:0.678531005544;GTF2A1,2:0.678162147297;ZIC1..3:0.663188696882;HIC1:0.662590511826;MZF1:0.643139970953;GTF2I:0.636173205024;MAFB:0.634017902013;HMX1:0.617875887301;ZBTB6:0.603127131546;TLX1..3_NFIC{dimer}:0.599402576926;SRF:0.599349279695;MTF1:0.59344061978;LHX3,4:0.585078972586;EGR1..3:0.577068981385;GCM1,2:0.507087570035;RREB1:0.476602910074;XBP1:0.466453351062;NR6A1:0.452313650276;TBX4,5:0.389024550631;RXRA_VDR{dimer}:0.386011734;PAX4:0.347517614781;NR3C1:0.344728890374;IRF7:0.341500933966;IKZF1:0.338855215966;bHLH_family:0.32843535431;PRDM1:0.311846121022;GFI1B:0.309572857303;HOX{A4,D4}:0.257727151583;MYB:0.253616922626;SP1:0.240195652837;MYFfamily:0.211927873402;HOX{A6,A7,B6,B7}:0.198184051824;NFE2L2:0.172899801976;NHLH1,2:0.157265560719;CDC5L:0.156810518569;ZFP161:0.153117459338;TOPORS:0.142360023246;PPARG:0.127562789073;NKX2-1,4:0.126066380021;NKX3-2:0.120296350886;NR1H4:0.100676181377;STAT2,4,6:0.0787412106936;STAT5{A,B}:0.0685824412742;HLF:0.0658420310768;PAX3,7:0.0566612770549;BPTF:0.0553559009334;REST:0.0463037706596;MED-1{core}:0.0382307711574;ZNF384:0.0347012594229;CEBPA,B_DDIT3:0.0224286338078;SREBF1,2:0.0186416465383;SMAD1..7,9:0.00533304350804;ARID5B:-0.041574426148;EN1,2:-0.0464579666107;YY1:-0.0555042678948;TBP:-0.0783299451405;SOX17:-0.117980364796;SOX5:-0.144024267615;TEF:-0.145975018861;BACH2:-0.170850943309;NFKB1_REL_RELA:-0.191914488708;DBP:-0.194963710666;DMAP1_NCOR{1,2}_SMARC:-0.203019894845;GFI1:-0.205987021314;LMO2:-0.214539957792;NFE2:-0.221980965546;HNF4A_NR2F1,2:-0.235989483772;HNF1A:-0.238868743174;CREB1:-0.260348700096;NKX2-3_NKX2-5:-0.261064164588;MEF2{A,B,C,D}:-0.266794179782;RBPJ:-0.278132860633;FOS_FOS{B,L1}_JUN{B,D}:-0.282145980957;HIF1A:-0.306852132882;PAX8:-0.309490906242;HOXA9_MEIS1:-0.310464489552;FOXP1:-0.311965602172;ZNF148:-0.322187124568;ATF4:-0.332071110797;POU3F1..4:-0.347248250925;PITX1..3:-0.349820710502;NR5A1,2:-0.353762707039;RUNX1..3:-0.354111626924;ATF5_CREB3:-0.355034077049;CDX1,2,4:-0.379140061274;FOX{D1,D2}:-0.388015998755;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.418429908603;ZNF143:-0.423171836644;RFX1:-0.427239220675;PDX1:-0.439725944379;RFX2..5_RFXANK_RFXAP:-0.451353503495;FOSL2:-0.459740648943;HOX{A5,B5}:-0.460401717307;HBP1_HMGB_SSRP1_UBTF:-0.46204982912;IKZF2:-0.49451660663;AHR_ARNT_ARNT2:-0.515936579282;T:-0.516996977052;E2F1..5:-0.527210974164;RORA:-0.538501572243;FOX{F1,F2,J1}:-0.541048149804;ONECUT1,2:-0.545259098208;FOXA2:-0.558029034429;BREu{core}:-0.576581623224;FOX{I1,J2}:-0.582026965793;POU5F1:-0.588698567503;POU6F1:-0.591877004168;JUN:-0.603221497122;ELK1,4_GABP{A,B1}:-0.613488107849;AR:-0.620834783723;PAX2:-0.622446926846;ETS1,2:-0.638871653041;FOXM1:-0.657389852328;NFIL3:-0.675876776907;SPIB:-0.679031913041;POU1F1:-0.682564194284;NRF1:-0.687381583948;ZBTB16:-0.700164053989;CUX2:-0.709968602288;FOXP3:-0.711884180723;SPI1:-0.72621663415;ESRRA:-0.750440028219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.762889961434;LEF1_TCF7_TCF7L1,2:-0.767492295034;HSF1,2:-0.798840516081;PBX1:-0.807193857352;ZEB1:-0.820094297636;ELF1,2,4:-0.885641329209;SOX2:-0.963486984361;PRRX1,2:-0.981119832805;SNAI1..3:-0.985583522703;FOXN1:-1.00341830699;ATF2:-1.00645684993;ALX1:-1.07629571633;STAT1,3:-1.09563714671;POU2F1..3:-1.09944549801;OCT4_SOX2{dimer}:-1.12220802789;ADNP_IRX_SIX_ZHX:-1.14524321141;MYOD1:-1.14735618388;TGIF1:-1.15395063687;CRX:-1.16041945531;TLX2:-1.17602709903;PAX6:-1.18667683991;GATA6:-1.26383821848;NFY{A,B,C}:-1.3167901474;VSX1,2:-1.33781020174;SOX{8,9,10}:-1.38433334216;FOXQ1:-1.38746297625;EP300:-1.41758074495;NANOG:-2.49028782646 | |top_motifs=ESR1:2.51385073123;FOXL1:2.34204297501;ALX4:2.26878128812;UFEwm:2.20299616277;NKX2-2,8:1.79220764054;ZNF238:1.68589181735;RXR{A,B,G}:1.59847237134;TFAP4:1.54188751198;GLI1..3:1.53524945471;PAX1,9:1.53470988622;EVI1:1.52213946846;EBF1:1.46748839727;NKX3-1:1.46094179832;KLF4:1.38988062105;MYBL2:1.33872927736;HMGA1,2:1.33830687267;HES1:1.25104055001;SPZ1:1.21243658876;TFAP2{A,C}:1.12099483623;TFCP2:1.07119963274;MAZ:1.06317002505;TAL1_TCF{3,4,12}:1.05937257389;IRF1,2:1.04810512897;TP53:1.03665158112;PATZ1:1.01255952634;NANOG{mouse}:0.979078307243;NFIX:0.969253245976;TEAD1:0.930997370225;NKX6-1,2:0.918461150725;FOXD3:0.910661495959;ZNF423:0.875885915229;GATA4:0.870638962492;AIRE:0.858169563549;HAND1,2:0.804269907227;GZF1:0.796203478278;TFAP2B:0.792225024965;MTE{core}:0.783445930404;XCPE1{core}:0.747363334838;TFDP1:0.727360847373;PAX5:0.69965832024;NFATC1..3:0.697099902076;FOXO1,3,4:0.689780982821;ATF6:0.682096664502;NFE2L1:0.678531005544;GTF2A1,2:0.678162147297;ZIC1..3:0.663188696882;HIC1:0.662590511826;MZF1:0.643139970953;GTF2I:0.636173205024;MAFB:0.634017902013;HMX1:0.617875887301;ZBTB6:0.603127131546;TLX1..3_NFIC{dimer}:0.599402576926;SRF:0.599349279695;MTF1:0.59344061978;LHX3,4:0.585078972586;EGR1..3:0.577068981385;GCM1,2:0.507087570035;RREB1:0.476602910074;XBP1:0.466453351062;NR6A1:0.452313650276;TBX4,5:0.389024550631;RXRA_VDR{dimer}:0.386011734;PAX4:0.347517614781;NR3C1:0.344728890374;IRF7:0.341500933966;IKZF1:0.338855215966;bHLH_family:0.32843535431;PRDM1:0.311846121022;GFI1B:0.309572857303;HOX{A4,D4}:0.257727151583;MYB:0.253616922626;SP1:0.240195652837;MYFfamily:0.211927873402;HOX{A6,A7,B6,B7}:0.198184051824;NFE2L2:0.172899801976;NHLH1,2:0.157265560719;CDC5L:0.156810518569;ZFP161:0.153117459338;TOPORS:0.142360023246;PPARG:0.127562789073;NKX2-1,4:0.126066380021;NKX3-2:0.120296350886;NR1H4:0.100676181377;STAT2,4,6:0.0787412106936;STAT5{A,B}:0.0685824412742;HLF:0.0658420310768;PAX3,7:0.0566612770549;BPTF:0.0553559009334;REST:0.0463037706596;MED-1{core}:0.0382307711574;ZNF384:0.0347012594229;CEBPA,B_DDIT3:0.0224286338078;SREBF1,2:0.0186416465383;SMAD1..7,9:0.00533304350804;ARID5B:-0.041574426148;EN1,2:-0.0464579666107;YY1:-0.0555042678948;TBP:-0.0783299451405;SOX17:-0.117980364796;SOX5:-0.144024267615;TEF:-0.145975018861;BACH2:-0.170850943309;NFKB1_REL_RELA:-0.191914488708;DBP:-0.194963710666;DMAP1_NCOR{1,2}_SMARC:-0.203019894845;GFI1:-0.205987021314;LMO2:-0.214539957792;NFE2:-0.221980965546;HNF4A_NR2F1,2:-0.235989483772;HNF1A:-0.238868743174;CREB1:-0.260348700096;NKX2-3_NKX2-5:-0.261064164588;MEF2{A,B,C,D}:-0.266794179782;RBPJ:-0.278132860633;FOS_FOS{B,L1}_JUN{B,D}:-0.282145980957;HIF1A:-0.306852132882;PAX8:-0.309490906242;HOXA9_MEIS1:-0.310464489552;FOXP1:-0.311965602172;ZNF148:-0.322187124568;ATF4:-0.332071110797;POU3F1..4:-0.347248250925;PITX1..3:-0.349820710502;NR5A1,2:-0.353762707039;RUNX1..3:-0.354111626924;ATF5_CREB3:-0.355034077049;CDX1,2,4:-0.379140061274;FOX{D1,D2}:-0.388015998755;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.418429908603;ZNF143:-0.423171836644;RFX1:-0.427239220675;PDX1:-0.439725944379;RFX2..5_RFXANK_RFXAP:-0.451353503495;FOSL2:-0.459740648943;HOX{A5,B5}:-0.460401717307;HBP1_HMGB_SSRP1_UBTF:-0.46204982912;IKZF2:-0.49451660663;AHR_ARNT_ARNT2:-0.515936579282;T:-0.516996977052;E2F1..5:-0.527210974164;RORA:-0.538501572243;FOX{F1,F2,J1}:-0.541048149804;ONECUT1,2:-0.545259098208;FOXA2:-0.558029034429;BREu{core}:-0.576581623224;FOX{I1,J2}:-0.582026965793;POU5F1:-0.588698567503;POU6F1:-0.591877004168;JUN:-0.603221497122;ELK1,4_GABP{A,B1}:-0.613488107849;AR:-0.620834783723;PAX2:-0.622446926846;ETS1,2:-0.638871653041;FOXM1:-0.657389852328;NFIL3:-0.675876776907;SPIB:-0.679031913041;POU1F1:-0.682564194284;NRF1:-0.687381583948;ZBTB16:-0.700164053989;CUX2:-0.709968602288;FOXP3:-0.711884180723;SPI1:-0.72621663415;ESRRA:-0.750440028219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.762889961434;LEF1_TCF7_TCF7L1,2:-0.767492295034;HSF1,2:-0.798840516081;PBX1:-0.807193857352;ZEB1:-0.820094297636;ELF1,2,4:-0.885641329209;SOX2:-0.963486984361;PRRX1,2:-0.981119832805;SNAI1..3:-0.985583522703;FOXN1:-1.00341830699;ATF2:-1.00645684993;ALX1:-1.07629571633;STAT1,3:-1.09563714671;POU2F1..3:-1.09944549801;OCT4_SOX2{dimer}:-1.12220802789;ADNP_IRX_SIX_ZHX:-1.14524321141;MYOD1:-1.14735618388;TGIF1:-1.15395063687;CRX:-1.16041945531;TLX2:-1.17602709903;PAX6:-1.18667683991;GATA6:-1.26383821848;NFY{A,B,C}:-1.3167901474;VSX1,2:-1.33781020174;SOX{8,9,10}:-1.38433334216;FOXQ1:-1.38746297625;EP300:-1.41758074495;NANOG:-2.49028782646 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11303-117B7;search_select_hide=table117:FF:11303-117B7 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Fibroblast - Gingival, donor5 (GFH3) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11952 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11952
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11952
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.266 |
| 10 | 10 | 0.814 |
| 100 | 100 | 0.867 |
| 101 | 101 | 0.2 |
| 102 | 102 | 0.0831 |
| 103 | 103 | 0.843 |
| 104 | 104 | 0.542 |
| 105 | 105 | 0.0837 |
| 106 | 106 | 0.129 |
| 107 | 107 | 0.0803 |
| 108 | 108 | 0.317 |
| 109 | 109 | 0.815 |
| 11 | 11 | 0.685 |
| 110 | 110 | 0.802 |
| 111 | 111 | 0.613 |
| 112 | 112 | 0.783 |
| 113 | 113 | 0.969 |
| 114 | 114 | 0.597 |
| 115 | 115 | 0.00118 |
| 116 | 116 | 0.0426 |
| 117 | 117 | 0.625 |
| 118 | 118 | 0.607 |
| 119 | 119 | 0.839 |
| 12 | 12 | 0.0489 |
| 120 | 120 | 0.306 |
| 121 | 121 | 0.979 |
| 122 | 122 | 0.0254 |
| 123 | 123 | 0.0552 |
| 124 | 124 | 0.624 |
| 125 | 125 | 0.92 |
| 126 | 126 | 0.918 |
| 127 | 127 | 0.843 |
| 128 | 128 | 0.0943 |
| 129 | 129 | 0.307 |
| 13 | 13 | 0.0557 |
| 130 | 130 | 0.853 |
| 131 | 131 | 0.483 |
| 132 | 132 | 0.343 |
| 133 | 133 | 0.213 |
| 134 | 134 | 0.222 |
| 135 | 135 | 0.904 |
| 136 | 136 | 0.0808 |
| 137 | 137 | 0.728 |
| 138 | 138 | 0.994 |
| 139 | 139 | 0.55 |
| 14 | 14 | 0.24 |
| 140 | 140 | 0.638 |
| 141 | 141 | 0.0591 |
| 142 | 142 | 0.923 |
| 143 | 143 | 0.816 |
| 144 | 144 | 0.328 |
| 145 | 145 | 0.72 |
| 146 | 146 | 0.566 |
| 147 | 147 | 0.283 |
| 148 | 148 | 0.472 |
| 149 | 149 | 0.209 |
| 15 | 15 | 0.229 |
| 150 | 150 | 0.121 |
| 151 | 151 | 0.788 |
| 152 | 152 | 0.00338 |
| 153 | 153 | 0.905 |
| 154 | 154 | 0.512 |
| 155 | 155 | 0.111 |
| 156 | 156 | 0.961 |
| 157 | 157 | 0.364 |
| 158 | 158 | 0.0501 |
| 159 | 159 | 0.82 |
| 16 | 16 | 0.135 |
| 160 | 160 | 0.89 |
| 161 | 161 | 0.874 |
| 162 | 162 | 0.251 |
| 163 | 163 | 0.781 |
| 164 | 164 | 0.258 |
| 165 | 165 | 0.905 |
| 166 | 166 | 0.0245 |
| 167 | 167 | 0.379 |
| 168 | 168 | 0.562 |
| 169 | 169 | 0.23 |
| 17 | 17 | 0.76 |
| 18 | 18 | 0.307 |
| 19 | 19 | 0.0096 |
| 2 | 2 | 0.286 |
| 20 | 20 | 0.481 |
| 21 | 21 | 0.151 |
| 22 | 22 | 0.471 |
| 23 | 23 | 0.354 |
| 24 | 24 | 0.146 |
| 25 | 25 | 0.182 |
| 26 | 26 | 0.332 |
| 27 | 27 | 0.855 |
| 28 | 28 | 0.154 |
| 29 | 29 | 0.775 |
| 3 | 3 | 0.888 |
| 30 | 30 | 0.459 |
| 31 | 31 | 0.751 |
| 32 | 32 | 1.03151e-17 |
| 33 | 33 | 0.805 |
| 34 | 34 | 0.92 |
| 35 | 35 | 0.564 |
| 36 | 36 | 0.0138 |
| 37 | 37 | 0.427 |
| 38 | 38 | 0.256 |
| 39 | 39 | 0.626 |
| 4 | 4 | 0.236 |
| 40 | 40 | 0.0442 |
| 41 | 41 | 0.493 |
| 42 | 42 | 0.218 |
| 43 | 43 | 0.968 |
| 44 | 44 | 0.379 |
| 45 | 45 | 0.992 |
| 46 | 46 | 0.59 |
| 47 | 47 | 0.405 |
| 48 | 48 | 0.422 |
| 49 | 49 | 0.267 |
| 5 | 5 | 0.59 |
| 50 | 50 | 0.555 |
| 51 | 51 | 0.929 |
| 52 | 52 | 0.578 |
| 53 | 53 | 0.0807 |
| 54 | 54 | 0.673 |
| 55 | 55 | 0.219 |
| 56 | 56 | 0.861 |
| 57 | 57 | 0.782 |
| 58 | 58 | 0.239 |
| 59 | 59 | 0.0379 |
| 6 | 6 | 0.73 |
| 60 | 60 | 0.996 |
| 61 | 61 | 0.782 |
| 62 | 62 | 0.78 |
| 63 | 63 | 0.479 |
| 64 | 64 | 0.467 |
| 65 | 65 | 0.735 |
| 66 | 66 | 0.104 |
| 67 | 67 | 0.825 |
| 68 | 68 | 0.402 |
| 69 | 69 | 0.604 |
| 7 | 7 | 0.086 |
| 70 | 70 | 0.492 |
| 71 | 71 | 0.624 |
| 72 | 72 | 0.373 |
| 73 | 73 | 0.0215 |
| 74 | 74 | 0.518 |
| 75 | 75 | 0.626 |
| 76 | 76 | 0.177 |
| 77 | 77 | 0.2 |
| 78 | 78 | 0.218 |
| 79 | 79 | 3.82121e-4 |
| 8 | 8 | 0.556 |
| 80 | 80 | 0.039 |
| 81 | 81 | 0.659 |
| 82 | 82 | 0.883 |
| 83 | 83 | 0.094 |
| 84 | 84 | 0.98 |
| 85 | 85 | 0.115 |
| 86 | 86 | 0.426 |
| 87 | 87 | 0.439 |
| 88 | 88 | 0.294 |
| 89 | 89 | 0.105 |
| 9 | 9 | 0.608 |
| 90 | 90 | 0.403 |
| 91 | 91 | 0.775 |
| 92 | 92 | 0.686 |
| 93 | 93 | 0.341 |
| 94 | 94 | 0.852 |
| 95 | 95 | 0.839 |
| 96 | 96 | 0.369 |
| 97 | 97 | 0.689 |
| 98 | 98 | 0.203 |
| 99 | 99 | 0.00422 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11952
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
