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(Created page with "{{f5samples |id=FF:11303-117B7 |name=Fibroblast - Gingival, donor5 (GFH3) |sample_id=11303 |rna_tube_id=117B7 |rna_box=117 |rna_position=B7 |sample_cell_lot=N/A |sampl...")
 
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{{f5samples
{{f5samples
|id=FF:11303-117B7
|DRA_sample_Accession=CAGE@SAMD00004968
|name=Fibroblast - Gingival, donor5 (GFH3)
|accession_numbers=CAGE;DRX008264;DRR009136;DRZ000561;DRZ001946;DRZ011911;DRZ013296
|sample_id=11303
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|rna_tube_id=117B7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552
|rna_box=117
|rna_position=B7
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=N/A
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=22 years old adult
|sample_tissue=gum
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=22
|sample_ethnicity=A
|rna_rin=9.50000
|rna_od260/230=1.68667
|rna_od260/280=2.05000
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=18.58560
|rna_concentration=0.84500
|sample_note=
|profile_hcage=CNhs11952,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002552
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0001828,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0004111,UBERON:0004119,UBERON:0005423,UBERON:0007026
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.17!163.69!PRRX1;;chr10:28034739..28034756,-!p1@MKX!2.10!125.61!MKX;;chr16:86544113..86544145,+!p1@FOXF1!2.04!134.02!FOXF1;;chr9:132427883..132427951,+!p2@PRRX2!1.93!84.81!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.85!89.26!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.84!91.74!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.76!76.65!FOXF2;;chr4:4861385..4861398,+!p1@MSX1!1.64!122.64!MSX1;;chr7:19157248..19157268,-!p1@TWIST1!1.63!110.78!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!200.04!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.58!109.79!TBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!45.25!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.55!106.82!TWIST2;;chr14:61116183..61116208,-!p1@SIX1!1.54!122.89!SIX1;;chr6:134210243..134210257,+!p1@TCF21!1.48!29.18!TCF21;;chr1:170633262..170633285,+!p3@PRRX1!1.45!31.16!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.40!39.81!TCF12;;chr8:72756667..72756736,-!p2@MSC!1.37!34.37!MSC;;chr2:200322654..200322707,-!p2@SATB2!1.37!32.64!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.35!24.48!RUNX2;;chr7:44143925..44143970,+!p1@AEBP1!1.33!437.42!AEBP1;;chr1:170632477..170632506,+!p6@PRRX1!1.32!19.78!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.68!OSR1;;chr17:59477275..59477286,+!p3@TBX2!1.27!23.49!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.26!28.93!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.26!17.31!BARX1;;chr8:72756637..72756664,-!p3@MSC!1.24!18.55!MSC;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.22!TWIST2;;chr2:46524537..46524553,+!p1@EPAS1!1.17!1340.93!EPAS1;;chr2:200323414..200323455,-!p1@SATB2!1.16!28.93!SATB2;;chr1:170632115..170632136,+!p9@PRRX1!1.16!13.35!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.23!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!1.14!30.41!NFATC4;;chr6:1389989..1390019,+!p2@FOXF2!1.13!12.61!FOXF2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.13!FOXD1;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.22!NR4A3;;chr1:170632762..170632786,+!p13@PRRX1!1.09!11.37!PRRX1;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.29!TBX2;;chr8:72756267..72756296,-!p4@MSC!1.08!16.32!MSC;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.13!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.07!19.53!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.87!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!1.07!10.63!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.07!10.63!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.06!10.39!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!1.05!10.14!HEYL;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.64!PAX9;;chr10:28035133..28035148,-!p3@MKX!1.02!9.40!MKX;;chr1:75600067..75600094,+!p2@LHX8!1.02!9.40!LHX8;;chr10:31607702..31607755,+!p3@ZEB1!1.00!10.39!ZEB1;;chr10:131762504..131762555,-!p1@EBF3!1.00!8.90!EBF3;;chr2:46602901..46602926,+!p7@EPAS1!0.99!11.87!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.98!11.13!AEBP1;;chr17:46132044..46132080,+!p4@NFE2L1!0.98!8.65!NFE2L1;;chr12:115122318..115122331,-!p2@TBX3!0.98!8.65!TBX3;;chr5:134369905..134369972,-!p1@PITX1!0.97!12.86!PITX1;;chr1:170632310..170632321,+!p15@PRRX1!0.97!8.41!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.96!26.46!AHRR;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.16!ZFY;;chr13:45151259..45151326,-!p2@TSC22D1!0.94!47.97!TSC22D1;;chr6:1389824..1389840,+!p3@FOXF2!0.94!7.67!FOXF2;;chr11:65687362..65687436,+!p3@DRAP1!0.93!35.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.53!TWIST1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.89!MSC;;chrY:21906594..21906622,-!p1@KDM5D!0.93!7.42!KDM5D;;chr8:99956662..99956684,+!p1@OSR2!0.92!11.62!OSR2;;chr8:72756063..72756125,-!p1@MSC!0.91!14.84!MSC;;chr2:95963052..95963106,+!p1@KCNIP3!0.91!7.17!KCNIP3;;chr1:170632647..170632659,+!p17@PRRX1!0.91!7.17!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.42!GLIS1;;chr7:96654133..96654150,-!p1@DLX5!0.90!6.92!DLX5;;chr10:28035112..28035130,-!p5@MKX!0.90!6.92!MKX;;chr5:72744445..72744466,-!p2@FOXD1!0.89!11.62!FOXD1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.63!ZBTB38;;chr2:172949484..172949522,+!p1@DLX1!0.89!6.68!DLX1;;chr10:28032421..28032494,-!p2@MKX!0.89!6.68!MKX;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.68!PRRX1;;chr12:53625966..53626012,-!p2@RARG!0.87!17.80!RARG;;chr11:46299443..46299459,+!p4@CREB3L1!0.87!6.43!CREB3L1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.12!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.85!27.20!ZNF521;;chr2:46612891..46612907,+!p10@EPAS1!0.84!5.93!EPAS1;;chr12:53625846..53625861,-!p6@RARG!0.84!5.93!RARG;;chr8:60031934..60031986,-!p6@TOX!0.84!5.93!TOX;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.19!HMGA2;;chr10:28035155..28035166,-!p8@MKX!0.83!5.69!MKX;;chr2:191878874..191878938,-!p1@STAT1!0.82!327.88!STAT1;;chr11:12696071..12696086,+!p3@TEAD1!0.82!7.67!TEAD1;;chr13:45150455..45150472,-!p8@TSC22D1!0.81!5.44!TSC22D1;;chr1:170632683..170632696,+!p12@PRRX1!0.81!5.44!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.81!5.44!LHX8;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.44!SIX2;;chr8:72756380..72756427,-!p8@MSC!0.81!5.44!MSC;;chr11:65687158..65687216,+!p4@DRAP1!0.80!33.13!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.79!8.90!MSX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.79!5.19!CREB3L1;;chr11:65687222..65687240,+!p7@DRAP1!0.78!6.68!DRAP1;;chr12:80085061..80085119,-!p6@PAWR!0.77!8.16!PAWR;;chr7:28220198..28220269,-!p2@JAZF1!0.76!46.73!JAZF1;;chr2:172950227..172950249,+!p2@DLX1!0.76!4.70!DLX1;;chr2:46602879..46602899,+!p8@EPAS1!0.75!5.69!EPAS1;;chr22:19748231..19748317,+!p1@TBX1!0.74!4.45!TBX1;;chr2:157189180..157189290,-!p1@NR4A2!0.73!25.47!NR4A2;;chr20:48807615..48807644,+!p6@CEBPB!0.73!7.67!CEBPB;;chr9:102584241..102584261,+!p4@NR4A3!0.73!7.17!NR4A3;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.19!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.72!4.20!RUNX1T1;;chr14:95236440..95236465,-!p1@GSC!0.72!4.20!GSC;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.20!KCNIP3;;chr14:75894714..75894733,+!p1@JDP2!0.71!133.03!JDP2;;chr16:54320101..54320125,-!p4@IRX3!0.71!6.18!IRX3;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.44!STAT1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.25!GLIS2;;chr11:615570..615721,-!p2@IRF7!0.70!8.65!IRF7;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.42!DRAP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.70!6.92!FOXQ1;;chr17:59477266..59477273,+!p6@TBX2!0.70!3.96!TBX2;;chr2:172967276..172967296,-!p3@DLX2!0.70!3.96!DLX2;;chr1:170633194..170633205,+!p18@PRRX1!0.70!3.96!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.70!3.96!PRRX1;;chr6:45390025..45390076,+!p2@RUNX2!0.69!10.39!RUNX2;;chr5:139487608..139487663,+!p3@PURA!0.69!9.15!PURA;;chr19:31840130..31840160,-!p2@TSHZ3!0.69!6.43!TSHZ3;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.46!SREBF1;;chr2:172967621..172967637,-!p1@DLX2!0.68!11.13!DLX2;;chr19:47922750..47922795,-!p1@MEIS3!0.68!6.68!MEIS3;;chr8:48650715..48650735,-!p1@CEBPD!0.67!544.48!CEBPD;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.25!ARID5B;;chr11:12696002..12696022,+!p2@TEAD1!0.67!9.89!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.67!7.67!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!0.67!6.92!ZEB2;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.19!DRAP1;;chr10:28034395..28034404,-!p9@MKX!0.67!3.71!MKX;;chr2:200322229..200322251,-!p3@SATB2!0.67!3.71!SATB2;;chr2:45236579..45236596,-!p2@SIX2!0.67!3.71!SIX2;;chr7:96654026..96654061,-!p2@DLX5!0.67!3.71!DLX5;;chr1:170632583..170632590,+!p26@PRRX1!0.67!3.71!PRRX1;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.71!TCF12;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.64!FOXC2;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.68!NFIX;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.46!ZNF668;;chr10:28034772..28034783,-!p4@MKX!0.65!3.46!MKX;;chr1:170632051..170632081,+!p16@PRRX1!0.65!3.46!PRRX1;;chr5:134369879..134369898,-!p2@PITX1!0.65!3.46!PITX1;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.46!EBF2;;chr8:72756194..72756208,-!p9@MSC!0.65!3.46!MSC;;chr3:71007344..71007348,-!p6@FOXP1!0.64!15.33!FOXP1;;chr11:65667884..65667895,-!p2@FOSL1!0.64!15.08!FOSL1;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.14!GLI3;;chr13:45151403..45151433,-!p5@TSC22D1!0.64!8.16!TSC22D1;;chr3:141105705..141105770,+!p4@ZBTB38!0.64!4.20!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.63!15.83!DRAP1;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr16:54320158..54320200,-!p5@IRX3!0.63!4.95!IRX3;;chr2:46524865..46524870,+!p9@EPAS1!0.63!3.96!EPAS1;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.45!ARNT2;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.45!CEBPG;;chr14:61116168..61116180,-!p2@SIX1!0.62!3.71!SIX1;;chr7:1577899..1577943,+!p3@MAFK!0.62!3.21!MAFK;;chr2:96012353..96012378,+!p4@KCNIP3!0.62!3.21!KCNIP3;;chr1:170632325..170632339,+!p24@PRRX1!0.62!3.21!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.61!21.26!ZEB2;;chr16:54320617..54320643,-!p3@IRX3!0.61!4.20!IRX3;;chr6:35464817..35464894,-!p1@TEAD3!0.60!54.65!TEAD3;;chr2:46612334..46612349,+!p6@EPAS1!0.60!4.20!EPAS1;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.20!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.60!3.21!SHOX2;;chr2:172967242..172967265,-!p2@DLX2!0.60!2.97!DLX2;;chr5:174151612..174151633,+!p2@MSX2!0.60!2.97!MSX2;;chr6:1389871..1389876,+!p4@FOXF2!0.60!2.97!FOXF2;;chr9:102584278..102584285,+!p5@NR4A3!0.60!2.97!NR4A3;;chr11:34642612..34642646,+!p1@EHF!0.60!2.97!EHF;;chr12:80085120..80085156,-!p14@PAWR!0.60!2.97!PAWR;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.97!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.67!TBX3;;chr6:19837592..19837621,+!p1@ID4!0.59!21.26!ID4;;chr16:79634624..79634642,-!p1@MAF!0.59!13.35!MAF;;chr18:3451646..3451691,+!p3@TGIF1!0.59!8.90!TGIF1;;chr8:60031682..60031710,-!p2@TOX!0.59!5.19!TOX;;chr17:46127997..46128015,+!p5@NFE2L1!0.58!4.20!NFE2L1;;chr5:72744562..72744573,-!p3@FOXD1!0.58!3.71!FOXD1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!174.82!NFE2L1;;chr7:28220354..28220441,-!p1@JAZF1!0.57!52.92!JAZF1;;chr10:63809013..63809041,+!p3@ARID5B!0.57!18.55!ARID5B;;chr15:42749722..42749739,-!p2@ZFP106!0.57!5.44!ZFP106;;chr2:119604456..119604501,-!p2@EN1!0.57!2.72!EN1;;chr10:31607811..31607837,+!p6@ZEB1!0.57!2.7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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.ctss.bed.gz
|id=FF:11303-117B7
|is_a=EFO:0002091;;FF:0000063
|is_obsolete=
|library_id=CNhs11952
|library_id_phase_based=2:CNhs11952
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11303
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11303
|name=Fibroblast - Gingival, donor5 (GFH3)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11952,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=117
|rna_catalog_number=N/A
|rna_concentration=0.845
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.686666667
|rna_od260/280=2.05
|rna_position=B7
|rna_rin=9.5
|rna_sample_type=total RNA
|rna_tube_id=117B7
|rna_weight_ug=18.5856
|sample_age=22
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_company=N/A
|sample_description=
|sample_dev_stage=22 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=A
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.64506757301576e-209!GO:0005737;cytoplasm;1.01971565209032e-179!GO:0043231;intracellular membrane-bound organelle;6.71898698414922e-155!GO:0043227;membrane-bound organelle;1.01141461893331e-154!GO:0043226;organelle;1.01141461893331e-154!GO:0043229;intracellular organelle;3.40535409008983e-154!GO:0044444;cytoplasmic part;2.43536090984401e-127!GO:0044422;organelle part;3.77002817657644e-109!GO:0044446;intracellular organelle part;9.48351411693609e-108!GO:0005515;protein binding;1.40709193628583e-78!GO:0032991;macromolecular complex;3.64009368736184e-75!GO:0044238;primary metabolic process;1.08058315873903e-72!GO:0044237;cellular metabolic process;2.26415375496363e-72!GO:0043170;macromolecule metabolic process;5.54918530724422e-66!GO:0030529;ribonucleoprotein complex;1.42456039025542e-64!GO:0005739;mitochondrion;4.37384943775688e-56!GO:0043233;organelle lumen;2.36022054391969e-55!GO:0031974;membrane-enclosed lumen;2.36022054391969e-55!GO:0003723;RNA binding;4.80175105332353e-54!GO:0005634;nucleus;1.08985647807625e-52!GO:0044428;nuclear part;2.99206522804267e-51!GO:0019538;protein metabolic process;1.29690420921542e-49!GO:0031090;organelle membrane;9.52866931467449e-48!GO:0044260;cellular macromolecule metabolic process;9.6396522026557e-45!GO:0044267;cellular protein metabolic process;9.29291181775933e-44!GO:0016043;cellular component organization and biogenesis;9.5578088338226e-44!GO:0005840;ribosome;8.69392426068773e-42!GO:0015031;protein transport;8.24922887514005e-41!GO:0033036;macromolecule localization;2.02625017174649e-40!GO:0006412;translation;4.14887693899666e-40!GO:0043234;protein complex;9.56729013746854e-39!GO:0045184;establishment of protein localization;3.7816218322711e-38!GO:0008104;protein localization;5.3550867623833e-38!GO:0003735;structural constituent of ribosome;6.38870292699611e-37!GO:0044429;mitochondrial part;8.10592787801976e-37!GO:0005829;cytosol;9.17148291168155e-37!GO:0009058;biosynthetic process;8.14535042681285e-35!GO:0033279;ribosomal subunit;2.51143539214138e-33!GO:0043283;biopolymer metabolic process;4.62503450217634e-33!GO:0031967;organelle envelope;4.62503450217634e-33!GO:0044249;cellular biosynthetic process;5.66268931273119e-33!GO:0031975;envelope;6.99760131313903e-33!GO:0009059;macromolecule biosynthetic process;1.2395417933317e-32!GO:0006396;RNA processing;6.11132374944207e-31!GO:0031981;nuclear lumen;6.8127796777678e-31!GO:0046907;intracellular transport;1.4712700261555e-30!GO:0010467;gene expression;2.85693563185504e-29!GO:0016071;mRNA metabolic process;4.82218146694425e-27!GO:0006886;intracellular protein transport;1.61152219993565e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.41337998173939e-25!GO:0065003;macromolecular complex assembly;2.06439420215723e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.41089221097741e-25!GO:0008380;RNA splicing;1.12881841511329e-24!GO:0005740;mitochondrial envelope;5.2783519938565e-24!GO:0022607;cellular component assembly;5.39727141806853e-23!GO:0006996;organelle organization and biogenesis;5.70066562357148e-23!GO:0031966;mitochondrial membrane;9.03013008094201e-23!GO:0005783;endoplasmic reticulum;3.39671218280583e-22!GO:0006397;mRNA processing;3.50003290658549e-22!GO:0019866;organelle inner membrane;4.69272428492683e-22!GO:0005743;mitochondrial inner membrane;1.86719838646055e-20!GO:0012505;endomembrane system;1.96682069890561e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.50128894159098e-20!GO:0006119;oxidative phosphorylation;5.44091511272557e-20!GO:0043228;non-membrane-bound organelle;5.66801876857644e-20!GO:0043232;intracellular non-membrane-bound organelle;5.66801876857644e-20!GO:0051649;establishment of cellular localization;1.48555311758722e-19!GO:0044445;cytosolic part;1.70498315156055e-19!GO:0051641;cellular localization;1.80854536795337e-19!GO:0005654;nucleoplasm;2.13010740541198e-19!GO:0048770;pigment granule;3.65581057723519e-19!GO:0042470;melanosome;3.65581057723519e-19!GO:0005794;Golgi apparatus;8.79920609071455e-19!GO:0008134;transcription factor binding;2.32822380160994e-18!GO:0000166;nucleotide binding;4.19630382790233e-18!GO:0006457;protein folding;5.53032222849467e-18!GO:0016462;pyrophosphatase activity;1.17912327836864e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.27121136417212e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8713380391302e-17!GO:0015935;small ribosomal subunit;2.59607879314878e-17!GO:0017111;nucleoside-triphosphatase activity;3.58684023634171e-17!GO:0015934;large ribosomal subunit;4.51657506778185e-17!GO:0005681;spliceosome;5.10101752663491e-17!GO:0044432;endoplasmic reticulum part;7.89871833307472e-17!GO:0044455;mitochondrial membrane part;1.00275480845976e-16!GO:0006512;ubiquitin cycle;1.02376042464897e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.66920589713459e-16!GO:0019941;modification-dependent protein catabolic process;5.26416637508954e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.26416637508954e-16!GO:0044451;nucleoplasm part;5.56135883870528e-16!GO:0043285;biopolymer catabolic process;6.10265814356181e-16!GO:0044257;cellular protein catabolic process;8.8374651867941e-16!GO:0016874;ligase activity;1.02630513602792e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.30930129753189e-15!GO:0030163;protein catabolic process;1.68085105548395e-15!GO:0031980;mitochondrial lumen;2.00745797177089e-15!GO:0005759;mitochondrial matrix;2.00745797177089e-15!GO:0005746;mitochondrial respiratory chain;4.16284656467645e-15!GO:0044265;cellular macromolecule catabolic process;9.72331973675553e-15!GO:0051186;cofactor metabolic process;1.19427332619433e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.2397699435627e-14!GO:0006605;protein targeting;1.64801924236635e-14!GO:0022618;protein-RNA complex assembly;2.22289799727156e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.75407004483205e-14!GO:0006259;DNA metabolic process;2.87707928742696e-14!GO:0012501;programmed cell death;5.92035074311545e-14!GO:0009057;macromolecule catabolic process;8.88783073304294e-14!GO:0007049;cell cycle;1.00910137544467e-13!GO:0032553;ribonucleotide binding;1.8107796900573e-13!GO:0032555;purine ribonucleotide binding;1.8107796900573e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.85238783550695e-13!GO:0003954;NADH dehydrogenase activity;1.85238783550695e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.85238783550695e-13!GO:0003676;nucleic acid binding;2.10321399708953e-13!GO:0006915;apoptosis;2.18852107564586e-13!GO:0048193;Golgi vesicle transport;2.73809215678628e-13!GO:0017076;purine nucleotide binding;3.02441262008887e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.47616522862811e-13!GO:0048523;negative regulation of cellular process;5.11774679773908e-13!GO:0044248;cellular catabolic process;6.46655566964911e-13!GO:0043412;biopolymer modification;7.10475900477688e-13!GO:0016192;vesicle-mediated transport;8.88844380267864e-13!GO:0008135;translation factor activity, nucleic acid binding;9.26171681636515e-13!GO:0008219;cell death;9.78570411669536e-13!GO:0016265;death;9.78570411669536e-13!GO:0051082;unfolded protein binding;1.31183720584693e-12!GO:0003712;transcription cofactor activity;2.18487335745604e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.31417266663934e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.51933690268671e-12!GO:0005730;nucleolus;3.51933690268671e-12!GO:0005761;mitochondrial ribosome;3.9715285366519e-12!GO:0000313;organellar ribosome;3.9715285366519e-12!GO:0006464;protein modification process;5.44764036548553e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.61325518553819e-12!GO:0005793;ER-Golgi intermediate compartment;1.15558099215086e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.44326317523067e-11!GO:0045271;respiratory chain complex I;1.44326317523067e-11!GO:0005747;mitochondrial respiratory chain complex I;1.44326317523067e-11!GO:0006732;coenzyme metabolic process;1.46266016306637e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.7781494765699e-11!GO:0042773;ATP synthesis coupled electron transport;1.7781494765699e-11!GO:0005789;endoplasmic reticulum membrane;2.07292524170975e-11!GO:0016070;RNA metabolic process;2.28482870355537e-11!GO:0048519;negative regulation of biological process;3.89344945723539e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.45047086833113e-11!GO:0008639;small protein conjugating enzyme activity;1.08036100034722e-10!GO:0009055;electron carrier activity;1.73989227242663e-10!GO:0004842;ubiquitin-protein ligase activity;2.47501161472633e-10!GO:0043687;post-translational protein modification;3.29322579133719e-10!GO:0003743;translation initiation factor activity;3.51114612719917e-10!GO:0003924;GTPase activity;4.65980256514885e-10!GO:0019787;small conjugating protein ligase activity;4.79670976442039e-10!GO:0022402;cell cycle process;4.98949302436613e-10!GO:0005635;nuclear envelope;6.21798957942852e-10!GO:0006913;nucleocytoplasmic transport;7.04785362577936e-10!GO:0005524;ATP binding;7.26208238776536e-10!GO:0051169;nuclear transport;1.24014205969104e-09!GO:0032559;adenyl ribonucleotide binding;1.34022189578202e-09!GO:0050794;regulation of cellular process;1.39492797916177e-09!GO:0006366;transcription from RNA polymerase II promoter;1.54812555730362e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.26502343538409e-09!GO:0030554;adenyl nucleotide binding;2.82115944232796e-09!GO:0006413;translational initiation;2.87851948178661e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.37407128115384e-09!GO:0000375;RNA splicing, via transesterification reactions;4.37407128115384e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.37407128115384e-09!GO:0043067;regulation of programmed cell death;4.65262749831897e-09!GO:0042981;regulation of apoptosis;5.19758021081988e-09!GO:0031965;nuclear membrane;5.31442210835679e-09!GO:0051726;regulation of cell cycle;6.33207371073832e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.4738581419501e-09!GO:0005768;endosome;6.62730231621675e-09!GO:0009259;ribonucleotide metabolic process;8.14190166936741e-09!GO:0000074;regulation of progression through cell cycle;9.03899421603673e-09!GO:0006446;regulation of translational initiation;9.12625384155408e-09!GO:0017038;protein import;1.337798373964e-08!GO:0016881;acid-amino acid ligase activity;1.45134767955565e-08!GO:0009150;purine ribonucleotide metabolic process;1.59304353038401e-08!GO:0006163;purine nucleotide metabolic process;2.15674275831357e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.35902442729946e-08!GO:0008565;protein transporter activity;3.03963100651059e-08!GO:0009141;nucleoside triphosphate metabolic process;3.08709509831781e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.10611658350612e-08!GO:0009056;catabolic process;3.39455656312359e-08!GO:0005788;endoplasmic reticulum lumen;4.62980568142825e-08!GO:0044431;Golgi apparatus part;4.71592648897435e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.97929762207908e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.38731266368905e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.38731266368905e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.52628532600185e-08!GO:0015986;ATP synthesis coupled proton transport;6.34321407185949e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.34321407185949e-08!GO:0009260;ribonucleotide biosynthetic process;7.12902183539737e-08!GO:0006164;purine nucleotide biosynthetic process;7.80383070286815e-08!GO:0019829;cation-transporting ATPase activity;7.82812769706067e-08!GO:0006461;protein complex assembly;9.27589326841478e-08!GO:0044453;nuclear membrane part;9.37155473226032e-08!GO:0008361;regulation of cell size;9.66585475796302e-08!GO:0051246;regulation of protein metabolic process;9.73463536041536e-08!GO:0016049;cell growth;1.03840746144523e-07!GO:0016604;nuclear body;1.07066914414456e-07!GO:0045333;cellular respiration;1.11957140998539e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.25664727033284e-07!GO:0009060;aerobic respiration;1.3709345556469e-07!GO:0006974;response to DNA damage stimulus;1.46758094096836e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.50310726908196e-07!GO:0045786;negative regulation of progression through cell cycle;1.71276717319984e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.83475041243323e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.83475041243323e-07!GO:0006916;anti-apoptosis;1.8644334521277e-07!GO:0016491;oxidoreductase activity;1.9742653701513e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.03210898003202e-07!GO:0046034;ATP metabolic process;2.04110114603229e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.11089794129529e-07!GO:0000278;mitotic cell cycle;2.15805505446876e-07!GO:0030120;vesicle coat;2.15976694310824e-07!GO:0030662;coated vesicle membrane;2.15976694310824e-07!GO:0042623;ATPase activity, coupled;2.21859504497075e-07!GO:0005773;vacuole;2.33095222593681e-07!GO:0051188;cofactor biosynthetic process;2.45886672973352e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.56443020566491e-07!GO:0043069;negative regulation of programmed cell death;2.57791126537714e-07!GO:0016564;transcription repressor activity;2.99648305662963e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.09583609285677e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.09583609285677e-07!GO:0048522;positive regulation of cellular process;3.14036539195089e-07!GO:0050789;regulation of biological process;3.33240268140266e-07!GO:0031324;negative regulation of cellular metabolic process;3.73521362851375e-07!GO:0016887;ATPase activity;3.80026198072846e-07!GO:0003714;transcription corepressor activity;4.30730449641928e-07!GO:0043066;negative regulation of apoptosis;4.40594637094595e-07!GO:0006323;DNA packaging;4.78315468649265e-07!GO:0001558;regulation of cell growth;5.00551578679431e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.06093085267534e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.06093085267534e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.06093085267534e-07!GO:0051276;chromosome organization and biogenesis;5.10588367918099e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.20418085423308e-07!GO:0042254;ribosome biogenesis and assembly;5.58466446557215e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.76984058665568e-07!GO:0048475;coated membrane;7.45165073764698e-07!GO:0030117;membrane coat;7.45165073764698e-07!GO:0009117;nucleotide metabolic process;7.66999684893748e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.88386811987691e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.34123670664098e-07!GO:0031988;membrane-bound vesicle;9.72930151347166e-07!GO:0043038;amino acid activation;9.93725535771445e-07!GO:0006418;tRNA aminoacylation for protein translation;9.93725535771445e-07!GO:0043039;tRNA aminoacylation;9.93725535771445e-07!GO:0006754;ATP biosynthetic process;1.02782505825155e-06!GO:0006753;nucleoside phosphate metabolic process;1.02782505825155e-06!GO:0005525;GTP binding;1.39616856462729e-06!GO:0006399;tRNA metabolic process;1.54508620570224e-06!GO:0000323;lytic vacuole;1.86933272555286e-06!GO:0005764;lysosome;1.86933272555286e-06!GO:0031252;leading edge;1.86933272555286e-06!GO:0031982;vesicle;2.55433651116345e-06!GO:0051170;nuclear import;2.56764856040519e-06!GO:0000151;ubiquitin ligase complex;2.64140890770951e-06!GO:0065004;protein-DNA complex assembly;2.83544596845542e-06!GO:0006099;tricarboxylic acid cycle;3.16921157000839e-06!GO:0046356;acetyl-CoA catabolic process;3.16921157000839e-06!GO:0009892;negative regulation of metabolic process;3.34910315124887e-06!GO:0051187;cofactor catabolic process;3.40380920514587e-06!GO:0031410;cytoplasmic vesicle;3.43607780964051e-06!GO:0006606;protein import into nucleus;3.82700808994568e-06!GO:0000139;Golgi membrane;4.0808682688219e-06!GO:0006793;phosphorus metabolic process;4.58883733271851e-06!GO:0006796;phosphate metabolic process;4.58883733271851e-06!GO:0016607;nuclear speck;4.60032616747002e-06!GO:0004298;threonine endopeptidase activity;4.86361469851865e-06!GO:0009108;coenzyme biosynthetic process;5.02375409211321e-06!GO:0004386;helicase activity;5.50304382874928e-06!GO:0009109;coenzyme catabolic process;5.81431946815047e-06!GO:0044440;endosomal part;6.43956655632103e-06!GO:0010008;endosome membrane;6.43956655632103e-06!GO:0005643;nuclear pore;6.46798186639126e-06!GO:0032446;protein modification by small protein conjugation;6.90120209126083e-06!GO:0007005;mitochondrion organization and biogenesis;6.92110664981231e-06!GO:0005798;Golgi-associated vesicle;6.96086370182268e-06!GO:0032561;guanyl ribonucleotide binding;7.05480218309264e-06!GO:0019001;guanyl nucleotide binding;7.05480218309264e-06!GO:0005770;late endosome;7.31690521673518e-06!GO:0016787;hydrolase activity;7.73667520523058e-06!GO:0051789;response to protein stimulus;8.13458694872354e-06!GO:0006986;response to unfolded protein;8.13458694872354e-06!GO:0006084;acetyl-CoA metabolic process;8.171903082836e-06!GO:0016567;protein ubiquitination;8.99469455790257e-06!GO:0003713;transcription coactivator activity;9.13146169271374e-06!GO:0065002;intracellular protein transport across a membrane;9.39212481086616e-06!GO:0006333;chromatin assembly or disassembly;1.20041014193808e-05!GO:0005694;chromosome;1.22004276830693e-05!GO:0005667;transcription factor complex;1.25403319281557e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.32742405089889e-05!GO:0045259;proton-transporting ATP synthase complex;1.3337081538876e-05!GO:0007243;protein kinase cascade;1.39190464565446e-05!GO:0008026;ATP-dependent helicase activity;1.50098140080969e-05!GO:0016310;phosphorylation;1.58357964082371e-05!GO:0000785;chromatin;1.58357964082371e-05!GO:0048518;positive regulation of biological process;1.88815012500068e-05!GO:0016481;negative regulation of transcription;1.92239432242326e-05!GO:0006752;group transfer coenzyme metabolic process;1.95470752338598e-05!GO:0006281;DNA repair;2.00101690764242e-05!GO:0009719;response to endogenous stimulus;2.03336635565787e-05!GO:0045454;cell redox homeostasis;2.37629651396315e-05!GO:0003697;single-stranded DNA binding;2.56907513676838e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.66608635868291e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.86352955688997e-05!GO:0006613;cotranslational protein targeting to membrane;3.06964306068991e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.59759108114095e-05!GO:0005762;mitochondrial large ribosomal subunit;4.09035391508101e-05!GO:0000315;organellar large ribosomal subunit;4.09035391508101e-05!GO:0046930;pore complex;4.15365058780802e-05!GO:0006091;generation of precursor metabolites and energy;4.15365058780802e-05!GO:0008654;phospholipid biosynthetic process;4.59003236126e-05!GO:0030133;transport vesicle;4.74493608146686e-05!GO:0016740;transferase activity;5.35517534731189e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.42374464220357e-05!GO:0044427;chromosomal part;5.88421106850909e-05!GO:0040008;regulation of growth;5.88750126447257e-05!GO:0016563;transcription activator activity;6.41389362258666e-05!GO:0043566;structure-specific DNA binding;6.46429512444056e-05!GO:0030867;rough endoplasmic reticulum membrane;7.31119431162567e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.31119431162567e-05!GO:0000245;spliceosome assembly;7.60286428060491e-05!GO:0030036;actin cytoskeleton organization and biogenesis;8.2635943064287e-05!GO:0005769;early endosome;9.4129034099535e-05!GO:0016568;chromatin modification;0.00010407171659297!GO:0005905;coated pit;0.000116719936216954!GO:0015630;microtubule cytoskeleton;0.000159189017845559!GO:0043623;cellular protein complex assembly;0.000173056714053718!GO:0005791;rough endoplasmic reticulum;0.000175966026210457!GO:0006403;RNA localization;0.000178899996119982!GO:0006334;nucleosome assembly;0.000185438493396456!GO:0050657;nucleic acid transport;0.000190558986396696!GO:0051236;establishment of RNA localization;0.000190558986396696!GO:0050658;RNA transport;0.000190558986396696!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000196223586804037!GO:0005048;signal sequence binding;0.000205502782593415!GO:0016859;cis-trans isomerase activity;0.00020898305526004!GO:0019843;rRNA binding;0.000229782934401553!GO:0019899;enzyme binding;0.000231148981930952!GO:0065007;biological regulation;0.000250472041970028!GO:0022403;cell cycle phase;0.000274040474498819!GO:0033116;ER-Golgi intermediate compartment membrane;0.000283727968295457!GO:0006612;protein targeting to membrane;0.000290911556627171!GO:0048468;cell development;0.000293476791537792!GO:0031968;organelle outer membrane;0.00029368264106198!GO:0019867;outer membrane;0.000303095325863607!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000303095325863607!GO:0006260;DNA replication;0.000312768705646611!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000322413753586598!GO:0006364;rRNA processing;0.00034166221498815!GO:0051427;hormone receptor binding;0.00034166221498815!GO:0016853;isomerase activity;0.00034719489533229!GO:0031497;chromatin assembly;0.000387252323091555!GO:0004576;oligosaccharyl transferase activity;0.000416920295323897!GO:0008250;oligosaccharyl transferase complex;0.000438477016761848!GO:0007050;cell cycle arrest;0.000496054209126615!GO:0005885;Arp2/3 protein complex;0.000499044202253184!GO:0043021;ribonucleoprotein binding;0.000499552741520609!GO:0051301;cell division;0.00054342986600071!GO:0016072;rRNA metabolic process;0.000548185719343421!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000557484691956553!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000567018099357429!GO:0051329;interphase of mitotic cell cycle;0.000570378788545442!GO:0030663;COPI coated vesicle membrane;0.000584574862451294!GO:0030126;COPI vesicle coat;0.000584574862451294!GO:0016779;nucleotidyltransferase activity;0.000622883925055894!GO:0003724;RNA helicase activity;0.000627743719322058!GO:0035257;nuclear hormone receptor binding;0.000662255532364473!GO:0030029;actin filament-based process;0.000726833652750009!GO:0005741;mitochondrial outer membrane;0.000746896775221274!GO:0000087;M phase of mitotic cell cycle;0.00078592447946542!GO:0044262;cellular carbohydrate metabolic process;0.0008103030076462!GO:0000314;organellar small ribosomal subunit;0.000830811301296787!GO:0005763;mitochondrial small ribosomal subunit;0.000830811301296787!GO:0007067;mitosis;0.000864021252557688!GO:0005813;centrosome;0.000936945005181164!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00110339576330372!GO:0045892;negative regulation of transcription, DNA-dependent;0.00112462713842934!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0011555618020976!GO:0015399;primary active transmembrane transporter activity;0.0011555618020976!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00122762111589847!GO:0051920;peroxiredoxin activity;0.00123817878963656!GO:0009967;positive regulation of signal transduction;0.00124311132101827!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0013882683251581!GO:0007010;cytoskeleton organization and biogenesis;0.00139334116407496!GO:0030137;COPI-coated vesicle;0.00142807101533022!GO:0048471;perinuclear region of cytoplasm;0.0014464062509706!GO:0019222;regulation of metabolic process;0.00152171478929087!GO:0009165;nucleotide biosynthetic process;0.00153493280962947!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00153709840124516!GO:0006891;intra-Golgi vesicle-mediated transport;0.00154042022012384!GO:0030132;clathrin coat of coated pit;0.0015824348068243!GO:0031072;heat shock protein binding;0.00171577944522605!GO:0030027;lamellipodium;0.00174092905405162!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00174622260747855!GO:0046474;glycerophospholipid biosynthetic process;0.00176243681495933!GO:0051028;mRNA transport;0.00183506704970708!GO:0016044;membrane organization and biogenesis;0.00184628785488473!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00184841722151277!GO:0018196;peptidyl-asparagine modification;0.00184841722151277!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00184841722151277!GO:0005815;microtubule organizing center;0.00185701915274002!GO:0008092;cytoskeletal protein binding;0.001929822370732!GO:0043065;positive regulation of apoptosis;0.00196131242346282!GO:0043488;regulation of mRNA stability;0.00209451423217989!GO:0043487;regulation of RNA stability;0.00209451423217989!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00217970846328309!GO:0051128;regulation of cellular component organization and biogenesis;0.00223250303868114!GO:0043068;positive regulation of programmed cell death;0.00235834030660541!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00238191137570666!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00238191137570666!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00238191137570666!GO:0051325;interphase;0.00238205677088675!GO:0045941;positive regulation of transcription;0.00238814343325989!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00249524224345355!GO:0007040;lysosome organization and biogenesis;0.00255488843378414!GO:0043681;protein import into mitochondrion;0.00262043814480475!GO:0022890;inorganic cation transmembrane transporter activity;0.00265881356140455!GO:0016197;endosome transport;0.00297741089512331!GO:0045792;negative regulation of cell size;0.00306431446667473!GO:0030308;negative regulation of cell growth;0.0032137639045581!GO:0003729;mRNA binding;0.00323744875964611!GO:0045893;positive regulation of transcription, DNA-dependent;0.00332815087192312!GO:0001726;ruffle;0.00349121883699395!GO:0007264;small GTPase mediated signal transduction;0.00362296180883943!GO:0051168;nuclear export;0.00365161290900057!GO:0043284;biopolymer biosynthetic process;0.00372503440679231!GO:0019752;carboxylic acid metabolic process;0.00385212662467685!GO:0007033;vacuole organization and biogenesis;0.00392398485075731!GO:0006082;organic acid metabolic process;0.00399404686462421!GO:0051252;regulation of RNA metabolic process;0.00405429319272503!GO:0048500;signal recognition particle;0.00426811876919269!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00431234740308931!GO:0008632;apoptotic program;0.00480227705643726!GO:0006979;response to oxidative stress;0.00481931803572467!GO:0048487;beta-tubulin binding;0.00487019169796983!GO:0008154;actin polymerization and/or depolymerization;0.00488347099842958!GO:0008139;nuclear localization sequence binding;0.00494381082349957!GO:0005581;collagen;0.00502425290310401!GO:0043492;ATPase activity, coupled to movement of substances;0.00502860859896195!GO:0008186;RNA-dependent ATPase activity;0.00521018300119815!GO:0008047;enzyme activator activity;0.00522470829572275!GO:0000059;protein import into nucleus, docking;0.00534839552719286!GO:0006818;hydrogen transport;0.00545709467976955!GO:0015992;proton transport;0.00552863474964121!GO:0046489;phosphoinositide biosynthetic process;0.00561449142580376!GO:0030176;integral to endoplasmic reticulum membrane;0.00581761905505323!GO:0030659;cytoplasmic vesicle membrane;0.00581761905505323!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00584862513705096!GO:0003899;DNA-directed RNA polymerase activity;0.00588189238235228!GO:0030134;ER to Golgi transport vesicle;0.00631708983501892!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00642473228359801!GO:0004674;protein serine/threonine kinase activity;0.00671500683513207!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00710374094289828!GO:0006509;membrane protein ectodomain proteolysis;0.00733848579161613!GO:0033619;membrane protein proteolysis;0.00733848579161613!GO:0065009;regulation of a molecular function;0.00733848579161613!GO:0017166;vinculin binding;0.00737191823540833!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00750368194176831!GO:0015002;heme-copper terminal oxidase activity;0.00750368194176831!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00750368194176831!GO:0004129;cytochrome-c oxidase activity;0.00750368194176831!GO:0030127;COPII vesicle coat;0.00750368194176831!GO:0012507;ER to Golgi transport vesicle membrane;0.00750368194176831!GO:0042802;identical protein binding;0.00754214922807004!GO:0046467;membrane lipid biosynthetic process;0.00762286524796609!GO:0006402;mRNA catabolic process;0.00765704677718086!GO:0005774;vacuolar membrane;0.00777462769768344!GO:0030041;actin filament polymerization;0.00779368785083435!GO:0030658;transport vesicle membrane;0.00784861153410044!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00811330753468663!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00813336177686215!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00829083821916984!GO:0030118;clathrin coat;0.00829083821916984!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00848466918584343!GO:0006626;protein targeting to mitochondrion;0.00851275758210735!GO:0006383;transcription from RNA polymerase III promoter;0.00872155226919931!GO:0000082;G1/S transition of mitotic cell cycle;0.00889952117517829!GO:0006414;translational elongation;0.00906587188912003!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00922138831239988!GO:0045047;protein targeting to ER;0.00922138831239988!GO:0003690;double-stranded DNA binding;0.00937756579840082!GO:0030145;manganese ion binding;0.00980999632148792!GO:0030521;androgen receptor signaling pathway;0.00998968952590988!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0101468244991709!GO:0006595;polyamine metabolic process;0.0101777410646399!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0102120526325812!GO:0004177;aminopeptidase activity;0.0103217099812492!GO:0007006;mitochondrial membrane organization and biogenesis;0.010331467029847!GO:0031543;peptidyl-proline dioxygenase activity;0.0106107977461424!GO:0035258;steroid hormone receptor binding;0.0108710291553!GO:0051059;NF-kappaB binding;0.0111688661988408!GO:0006650;glycerophospholipid metabolic process;0.0116005359985533!GO:0030833;regulation of actin filament polymerization;0.011890332352487!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.012188957870689!GO:0003746;translation elongation factor activity;0.0122589472728689!GO:0046519;sphingoid metabolic process;0.0124949737834703!GO:0004004;ATP-dependent RNA helicase activity;0.0126147382502886!GO:0045926;negative regulation of growth;0.0127774893344777!GO:0006790;sulfur metabolic process;0.0127774893344777!GO:0031625;ubiquitin protein ligase binding;0.0127809327776267!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0129594921341227!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0129594921341227!GO:0005869;dynactin complex;0.0129594921341227!GO:0008234;cysteine-type peptidase activity;0.0130225119258101!GO:0031418;L-ascorbic acid binding;0.0131701296925446!GO:0008484;sulfuric ester hydrolase activity;0.0136380064501849!GO:0050811;GABA receptor binding;0.0136380064501849!GO:0045936;negative regulation of phosphate metabolic process;0.0136936042506797!GO:0051287;NAD binding;0.0137190259032073!GO:0016363;nuclear matrix;0.0139445319931186!GO:0051540;metal cluster binding;0.0141504600771328!GO:0051536;iron-sulfur cluster binding;0.0141504600771328!GO:0044420;extracellular matrix part;0.0141504600771328!GO:0006917;induction of apoptosis;0.0141504600771328!GO:0044433;cytoplasmic vesicle part;0.0142767646684512!GO:0030880;RNA polymerase complex;0.0144125128132524!GO:0006839;mitochondrial transport;0.014493754724831!GO:0000287;magnesium ion binding;0.0147264044757462!GO:0019798;procollagen-proline dioxygenase activity;0.0147264044757462!GO:0006740;NADPH regeneration;0.0150027687903644!GO:0006098;pentose-phosphate shunt;0.0150027687903644!GO:0006352;transcription initiation;0.0155955882400449!GO:0051087;chaperone binding;0.0157585565566384!GO:0030660;Golgi-associated vesicle membrane;0.0160416917510232!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163361382336703!GO:0033559;unsaturated fatty acid metabolic process;0.0163665086928851!GO:0006636;unsaturated fatty acid biosynthetic process;0.0163665086928851!GO:0031529;ruffle organization and biogenesis;0.0163865840122492!GO:0045045;secretory pathway;0.0165714528653764!GO:0005520;insulin-like growth factor binding;0.017283782751804!GO:0030518;steroid hormone receptor signaling pathway;0.017421408985948!GO:0005862;muscle thin filament tropomyosin;0.0175407984577647!GO:0031902;late endosome membrane;0.0176675770912238!GO:0008610;lipid biosynthetic process;0.0178403374704272!GO:0000279;M phase;0.0178403374704272!GO:0005637;nuclear inner membrane;0.0181105203169199!GO:0044437;vacuolar part;0.0182068141640484!GO:0006354;RNA elongation;0.0182542740539651!GO:0012502;induction of programmed cell death;0.0183198112126409!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0184932568743481!GO:0033043;regulation of organelle organization and biogenesis;0.0184932568743481!GO:0006950;response to stress;0.0185694232322924!GO:0008312;7S RNA binding;0.0186591453132563!GO:0043022;ribosome binding;0.0194125088002918!GO:0007034;vacuolar transport;0.0200438075691592!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0203670649322543!GO:0030032;lamellipodium biogenesis;0.0205079100510577!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0211580182293087!GO:0005096;GTPase activator activity;0.0212898725766395!GO:0005765;lysosomal membrane;0.0214371743283428!GO:0000049;tRNA binding;0.0217367727565032!GO:0000902;cell morphogenesis;0.0219000457041057!GO:0032989;cellular structure morphogenesis;0.0219000457041057!GO:0051101;regulation of DNA binding;0.0223357883399415!GO:0007569;cell aging;0.0224086048160538!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0225271623485723!GO:0006401;RNA catabolic process;0.022853948503582!GO:0031901;early endosome membrane;0.023023954595155!GO:0050681;androgen receptor binding;0.0235273667485867!GO:0030503;regulation of cell redox homeostasis;0.0238859113932698!GO:0008637;apoptotic mitochondrial changes;0.0243631744371844!GO:0006611;protein export from nucleus;0.0247237684957602!GO:0006672;ceramide metabolic process;0.0247623925719343!GO:0012506;vesicle membrane;0.0248834186904906!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0250058858972014!GO:0030119;AP-type membrane coat adaptor complex;0.0256367259811856!GO:0007242;intracellular signaling cascade;0.0259188470945687!GO:0035035;histone acetyltransferase binding;0.0259254969753283!GO:0007160;cell-matrix adhesion;0.0262585569702046!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0262585569702046!GO:0000428;DNA-directed RNA polymerase complex;0.0262585569702046!GO:0051270;regulation of cell motility;0.026483320824757!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0271629940629926!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0271629940629926!GO:0016126;sterol biosynthetic process;0.027573590717802!GO:0031589;cell-substrate adhesion;0.0276676707749048!GO:0008180;signalosome;0.0281508320220026!GO:0005583;fibrillar collagen;0.0281668653535507!GO:0004722;protein serine/threonine phosphatase activity;0.0282111837446619!GO:0008022;protein C-terminus binding;0.0283343611597222!GO:0042326;negative regulation of phosphorylation;0.0290228183734915!GO:0006497;protein amino acid lipidation;0.0298770922581808!GO:0008629;induction of apoptosis by intracellular signals;0.0303073406511388!GO:0004228;gelatinase A activity;0.0303073406511388!GO:0001955;blood vessel maturation;0.0303073406511388!GO:0046483;heterocycle metabolic process;0.0304447107814353!GO:0008283;cell proliferation;0.0307697472030844!GO:0006607;NLS-bearing substrate import into nucleus;0.0307802335297337!GO:0000786;nucleosome;0.0310817770423391!GO:0045334;clathrin-coated endocytic vesicle;0.031544481976296!GO:0015631;tubulin binding;0.0327408507116667!GO:0005832;chaperonin-containing T-complex;0.0330196320123403!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0338780030196724!GO:0048144;fibroblast proliferation;0.033886017532126!GO:0048145;regulation of fibroblast proliferation;0.033886017532126!GO:0022415;viral reproductive process;0.0344947537483813!GO:0005819;spindle;0.0347899862132337!GO:0040029;regulation of gene expression, epigenetic;0.0348609082562813!GO:0007041;lysosomal transport;0.035012417960523!GO:0030384;phosphoinositide metabolic process;0.0352612519264365!GO:0016251;general RNA polymerase II transcription factor activity;0.0352716687458147!GO:0032906;transforming growth factor-beta2 production;0.0358738077595082!GO:0032909;regulation of transforming growth factor-beta2 production;0.0358738077595082!GO:0006739;NADP metabolic process;0.0363550460650862!GO:0003684;damaged DNA binding;0.0366145734751113!GO:0006520;amino acid metabolic process;0.0380439851769967!GO:0006506;GPI anchor biosynthetic process;0.0388817563857852!GO:0006897;endocytosis;0.0389092750356484!GO:0010324;membrane invagination;0.0389092750356484!GO:0006984;ER-nuclear signaling pathway;0.039006270445306!GO:0016584;nucleosome positioning;0.039006270445306!GO:0000096;sulfur amino acid metabolic process;0.039373522357013!GO:0008383;manganese superoxide dismutase activity;0.0393980658805617!GO:0001315;age-dependent response to reactive oxygen species;0.0393980658805617!GO:0009966;regulation of signal transduction;0.0395480536952881!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0401256403147701!GO:0009615;response to virus;0.0403402026661866!GO:0006118;electron transport;0.0403402026661866!GO:0008286;insulin receptor signaling pathway;0.04065309150219!GO:0051235;maintenance of localization;0.0410049473955543!GO:0000339;RNA cap binding;0.04108075763745!GO:0033673;negative regulation of kinase activity;0.04108075763745!GO:0006469;negative regulation of protein kinase activity;0.04108075763745!GO:0030984;kininogen binding;0.0413027542993803!GO:0004213;cathepsin B activity;0.0413027542993803!GO:0016791;phosphoric monoester hydrolase activity;0.0413273399252336!GO:0046426;negative regulation of JAK-STAT cascade;0.0423370959106798!GO:0048146;positive regulation of fibroblast proliferation;0.042521101924549!GO:0030125;clathrin vesicle coat;0.042521101924549!GO:0030665;clathrin coated vesicle membrane;0.042521101924549!GO:0006778;porphyrin metabolic process;0.0427931115483223!GO:0033013;tetrapyrrole metabolic process;0.0427931115483223!GO:0030131;clathrin adaptor complex;0.043000300375258!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0434182114690497!GO:0003779;actin binding;0.0435868657993796!GO:0016272;prefoldin complex;0.0436480868828686!GO:0001952;regulation of cell-matrix adhesion;0.0436513722820893!GO:0007021;tubulin folding;0.0439889308196999!GO:0004860;protein kinase inhibitor activity;0.0440790326482239!GO:0030508;thiol-disulfide exchange intermediate activity;0.0451477644817876!GO:0000792;heterochromatin;0.0460844445509558!GO:0005801;cis-Golgi network;0.0460844445509558!GO:0022408;negative regulation of cell-cell adhesion;0.0461608583335985!GO:0005684;U2-dependent spliceosome;0.0461951633930913!GO:0031272;regulation of pseudopodium formation;0.0471004503013322!GO:0031269;pseudopodium formation;0.0471004503013322!GO:0031344;regulation of cell projection organization and biogenesis;0.0471004503013322!GO:0031268;pseudopodium organization and biogenesis;0.0471004503013322!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0471004503013322!GO:0031274;positive regulation of pseudopodium formation;0.0471004503013322!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.047982459651379!GO:0004784;superoxide dismutase activity;0.047982459651379!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0480660325210513!GO:0018193;peptidyl-amino acid modification;0.0480778896540914!GO:0008538;proteasome activator activity;0.0483023815209812!GO:0006505;GPI anchor metabolic process;0.0484601105586548!GO:0006892;post-Golgi vesicle-mediated transport;0.0486673286636324!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0489079438517318!GO:0051539;4 iron, 4 sulfur cluster binding;0.0495029214567923!GO:0030911;TPR domain binding;0.0495029214567923!GO:0051098;regulation of binding;0.0497347800895361!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0497586393121699!GO:0003756;protein disulfide isomerase activity;0.0497586393121699!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0497586393121699!GO:0006289;nucleotide-excision repair;0.0499998924334972
|sample_id=11303
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=gum
|top_motifs=ESR1:2.51385073123;FOXL1:2.34204297501;ALX4:2.26878128812;UFEwm:2.20299616277;NKX2-2,8:1.79220764054;ZNF238:1.68589181735;RXR{A,B,G}:1.59847237134;TFAP4:1.54188751198;GLI1..3:1.53524945471;PAX1,9:1.53470988622;EVI1:1.52213946846;EBF1:1.46748839727;NKX3-1:1.46094179832;KLF4:1.38988062105;MYBL2:1.33872927736;HMGA1,2:1.33830687267;HES1:1.25104055001;SPZ1:1.21243658876;TFAP2{A,C}:1.12099483623;TFCP2:1.07119963274;MAZ:1.06317002505;TAL1_TCF{3,4,12}:1.05937257389;IRF1,2:1.04810512897;TP53:1.03665158112;PATZ1:1.01255952634;NANOG{mouse}:0.979078307243;NFIX:0.969253245976;TEAD1:0.930997370225;NKX6-1,2:0.918461150725;FOXD3:0.910661495959;ZNF423:0.875885915229;GATA4:0.870638962492;AIRE:0.858169563549;HAND1,2:0.804269907227;GZF1:0.796203478278;TFAP2B:0.792225024965;MTE{core}:0.783445930404;XCPE1{core}:0.747363334838;TFDP1:0.727360847373;PAX5:0.69965832024;NFATC1..3:0.697099902076;FOXO1,3,4:0.689780982821;ATF6:0.682096664502;NFE2L1:0.678531005544;GTF2A1,2:0.678162147297;ZIC1..3:0.663188696882;HIC1:0.662590511826;MZF1:0.643139970953;GTF2I:0.636173205024;MAFB:0.634017902013;HMX1:0.617875887301;ZBTB6:0.603127131546;TLX1..3_NFIC{dimer}:0.599402576926;SRF:0.599349279695;MTF1:0.59344061978;LHX3,4:0.585078972586;EGR1..3:0.577068981385;GCM1,2:0.507087570035;RREB1:0.476602910074;XBP1:0.466453351062;NR6A1:0.452313650276;TBX4,5:0.389024550631;RXRA_VDR{dimer}:0.386011734;PAX4:0.347517614781;NR3C1:0.344728890374;IRF7:0.341500933966;IKZF1:0.338855215966;bHLH_family:0.32843535431;PRDM1:0.311846121022;GFI1B:0.309572857303;HOX{A4,D4}:0.257727151583;MYB:0.253616922626;SP1:0.240195652837;MYFfamily:0.211927873402;HOX{A6,A7,B6,B7}:0.198184051824;NFE2L2:0.172899801976;NHLH1,2:0.157265560719;CDC5L:0.156810518569;ZFP161:0.153117459338;TOPORS:0.142360023246;PPARG:0.127562789073;NKX2-1,4:0.126066380021;NKX3-2:0.120296350886;NR1H4:0.100676181377;STAT2,4,6:0.0787412106936;STAT5{A,B}:0.0685824412742;HLF:0.0658420310768;PAX3,7:0.0566612770549;BPTF:0.0553559009334;REST:0.0463037706596;MED-1{core}:0.0382307711574;ZNF384:0.0347012594229;CEBPA,B_DDIT3:0.0224286338078;SREBF1,2:0.0186416465383;SMAD1..7,9:0.00533304350804;ARID5B:-0.041574426148;EN1,2:-0.0464579666107;YY1:-0.0555042678948;TBP:-0.0783299451405;SOX17:-0.117980364796;SOX5:-0.144024267615;TEF:-0.145975018861;BACH2:-0.170850943309;NFKB1_REL_RELA:-0.191914488708;DBP:-0.194963710666;DMAP1_NCOR{1,2}_SMARC:-0.203019894845;GFI1:-0.205987021314;LMO2:-0.214539957792;NFE2:-0.221980965546;HNF4A_NR2F1,2:-0.235989483772;HNF1A:-0.238868743174;CREB1:-0.260348700096;NKX2-3_NKX2-5:-0.261064164588;MEF2{A,B,C,D}:-0.266794179782;RBPJ:-0.278132860633;FOS_FOS{B,L1}_JUN{B,D}:-0.282145980957;HIF1A:-0.306852132882;PAX8:-0.309490906242;HOXA9_MEIS1:-0.310464489552;FOXP1:-0.311965602172;ZNF148:-0.322187124568;ATF4:-0.332071110797;POU3F1..4:-0.347248250925;PITX1..3:-0.349820710502;NR5A1,2:-0.353762707039;RUNX1..3:-0.354111626924;ATF5_CREB3:-0.355034077049;CDX1,2,4:-0.379140061274;FOX{D1,D2}:-0.388015998755;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.418429908603;ZNF143:-0.423171836644;RFX1:-0.427239220675;PDX1:-0.439725944379;RFX2..5_RFXANK_RFXAP:-0.451353503495;FOSL2:-0.459740648943;HOX{A5,B5}:-0.460401717307;HBP1_HMGB_SSRP1_UBTF:-0.46204982912;IKZF2:-0.49451660663;AHR_ARNT_ARNT2:-0.515936579282;T:-0.516996977052;E2F1..5:-0.527210974164;RORA:-0.538501572243;FOX{F1,F2,J1}:-0.541048149804;ONECUT1,2:-0.545259098208;FOXA2:-0.558029034429;BREu{core}:-0.576581623224;FOX{I1,J2}:-0.582026965793;POU5F1:-0.588698567503;POU6F1:-0.591877004168;JUN:-0.603221497122;ELK1,4_GABP{A,B1}:-0.613488107849;AR:-0.620834783723;PAX2:-0.622446926846;ETS1,2:-0.638871653041;FOXM1:-0.657389852328;NFIL3:-0.675876776907;SPIB:-0.679031913041;POU1F1:-0.682564194284;NRF1:-0.687381583948;ZBTB16:-0.700164053989;CUX2:-0.709968602288;FOXP3:-0.711884180723;SPI1:-0.72621663415;ESRRA:-0.750440028219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.762889961434;LEF1_TCF7_TCF7L1,2:-0.767492295034;HSF1,2:-0.798840516081;PBX1:-0.807193857352;ZEB1:-0.820094297636;ELF1,2,4:-0.885641329209;SOX2:-0.963486984361;PRRX1,2:-0.981119832805;SNAI1..3:-0.985583522703;FOXN1:-1.00341830699;ATF2:-1.00645684993;ALX1:-1.07629571633;STAT1,3:-1.09563714671;POU2F1..3:-1.09944549801;OCT4_SOX2{dimer}:-1.12220802789;ADNP_IRX_SIX_ZHX:-1.14524321141;MYOD1:-1.14735618388;TGIF1:-1.15395063687;CRX:-1.16041945531;TLX2:-1.17602709903;PAX6:-1.18667683991;GATA6:-1.26383821848;NFY{A,B,C}:-1.3167901474;VSX1,2:-1.33781020174;SOX{8,9,10}:-1.38433334216;FOXQ1:-1.38746297625;EP300:-1.41758074495;NANOG:-2.49028782646
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11303-117B7;search_select_hide=table117:FF:11303-117B7
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Fibroblast - Gingival, donor5 (GFH3)
Species:Human (Homo sapiens)
Library ID:CNhs11952
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stage22 years old adult
sexmale
age22
cell typefibroblast
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004968
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11952 CAGE DRX008264 DRR009136
Accession ID Hg19

Library idBAMCTSS
CNhs11952 DRZ000561 DRZ001946
Accession ID Hg38

Library idBAMCTSS
CNhs11952 DRZ011911 DRZ013296
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0138
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.128
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.985
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.395
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0805
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.096
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.825
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.366
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.525
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.151
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00608
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.208
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.35
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.173
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.356
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.241
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.436
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.472
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.35
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.096
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.084
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0952
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.571
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11952

Jaspar motifP-value
MA0002.20.0297
MA0003.10.353
MA0004.10.305
MA0006.10.0659
MA0007.10.826
MA0009.10.68
MA0014.10.346
MA0017.10.266
MA0018.20.00139
MA0019.10.82
MA0024.10.00743
MA0025.10.00115
MA0027.10.775
MA0028.16.7767e-4
MA0029.10.585
MA0030.10.425
MA0031.10.0789
MA0035.20.00272
MA0038.10.0404
MA0039.22.15345e-4
MA0040.10.509
MA0041.10.599
MA0042.10.622
MA0043.12.1055e-4
MA0046.10.132
MA0047.20.316
MA0048.10.18
MA0050.11.75767e-4
MA0051.10.00183
MA0052.10.198
MA0055.10.346
MA0057.10.392
MA0058.10.125
MA0059.10.16
MA0060.11.93306e-10
MA0061.10.295
MA0062.27.21861e-11
MA0065.20.528
MA0066.10.81
MA0067.10.00854
MA0068.10.425
MA0069.10.196
MA0070.10.835
MA0071.10.989
MA0072.10.438
MA0073.10.72
MA0074.10.188
MA0076.16.71128e-5
MA0077.10.349
MA0078.10.618
MA0079.20.643
MA0080.21.65009e-9
MA0081.10.0047
MA0083.10.0508
MA0084.10.0964
MA0087.10.785
MA0088.10.193
MA0090.10.0292
MA0091.10.087
MA0092.10.687
MA0093.10.226
MA0099.22.88628e-5
MA0100.10.502
MA0101.10.059
MA0102.20.811
MA0103.10.0204
MA0104.20.00168
MA0105.10.234
MA0106.10.26
MA0107.10.0844
MA0108.20.714
MA0111.10.942
MA0112.20.143
MA0113.10.975
MA0114.10.241
MA0115.10.232
MA0116.10.508
MA0117.10.0837
MA0119.10.368
MA0122.10.202
MA0124.10.103
MA0125.10.517
MA0131.10.179
MA0135.10.44
MA0136.12.0319e-14
MA0137.20.267
MA0138.20.513
MA0139.10.498
MA0140.10.00458
MA0141.10.933
MA0142.10.135
MA0143.10.757
MA0144.10.82
MA0145.10.87
MA0146.10.708
MA0147.15.3792e-4
MA0148.10.506
MA0149.10.407
MA0150.10.0037
MA0152.10.0159
MA0153.10.478
MA0154.10.686
MA0155.10.143
MA0156.13.60967e-11
MA0157.10.203
MA0159.10.23
MA0160.10.304
MA0162.10.0726
MA0163.10.499
MA0164.10.814
MA0258.10.158
MA0259.10.0146



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11952

Novel motifP-value
10.266
100.814
1000.867
1010.2
1020.0831
1030.843
1040.542
1050.0837
1060.129
1070.0803
1080.317
1090.815
110.685
1100.802
1110.613
1120.783
1130.969
1140.597
1150.00118
1160.0426
1170.625
1180.607
1190.839
120.0489
1200.306
1210.979
1220.0254
1230.0552
1240.624
1250.92
1260.918
1270.843
1280.0943
1290.307
130.0557
1300.853
1310.483
1320.343
1330.213
1340.222
1350.904
1360.0808
1370.728
1380.994
1390.55
140.24
1400.638
1410.0591
1420.923
1430.816
1440.328
1450.72
1460.566
1470.283
1480.472
1490.209
150.229
1500.121
1510.788
1520.00338
1530.905
1540.512
1550.111
1560.961
1570.364
1580.0501
1590.82
160.135
1600.89
1610.874
1620.251
1630.781
1640.258
1650.905
1660.0245
1670.379
1680.562
1690.23
170.76
180.307
190.0096
20.286
200.481
210.151
220.471
230.354
240.146
250.182
260.332
270.855
280.154
290.775
30.888
300.459
310.751
321.03151e-17
330.805
340.92
350.564
360.0138
370.427
380.256
390.626
40.236
400.0442
410.493
420.218
430.968
440.379
450.992
460.59
470.405
480.422
490.267
50.59
500.555
510.929
520.578
530.0807
540.673
550.219
560.861
570.782
580.239
590.0379
60.73
600.996
610.782
620.78
630.479
640.467
650.735
660.104
670.825
680.402
690.604
70.086
700.492
710.624
720.373
730.0215
740.518
750.626
760.177
770.2
780.218
793.82121e-4
80.556
800.039
810.659
820.883
830.094
840.98
850.115
860.426
870.439
880.294
890.105
90.608
900.403
910.775
920.686
930.341
940.852
950.839
960.369
970.689
980.203
990.00422



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11952


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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