FF:11335-117F3: Difference between revisions

Latest revision as of 17:53, 4 June 2020

Name:	Smooth Muscle Cells - Prostate, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11976
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	prostate
dev stage	34 years old adult
sex	male
age	34
cell type	smooth muscle cell
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005488

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11976		CAGE		DRX008496		DRR009368

Accession ID Hg19

Library id		BAM		CTSS
CNhs11976		DRZ000793		DRZ002178

Accession ID Hg38

Library id		BAM		CTSS
CNhs11976		DRZ012143		DRZ013528

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005488

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.GAGTGG		sRNA-Seq		DRX037245		DRR041611

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.GAGTGG		DRZ007253

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.162
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.137
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.329
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0105
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.15
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.199
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0378
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.65
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0666
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.243
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0535
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.138
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.785
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.299
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.021
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.17
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.195
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.195
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0574
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.809
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.785
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.267
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.795
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0574
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.357
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11976

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0442
MA0003.1	MA0003.1	0.583
MA0004.1	MA0004.1	0.0655
MA0006.1	MA0006.1	0.129
MA0007.1	MA0007.1	0.948
MA0009.1	MA0009.1	0.449
MA0014.1	MA0014.1	0.103
MA0017.1	MA0017.1	0.423
MA0018.2	MA0018.2	4.17417e-5
MA0019.1	MA0019.1	0.163
MA0024.1	MA0024.1	0.00865
MA0025.1	MA0025.1	9.43535e-4
MA0027.1	MA0027.1	0.802
MA0028.1	MA0028.1	0.719
MA0029.1	MA0029.1	0.515
MA0030.1	MA0030.1	0.0748
MA0031.1	MA0031.1	0.0626
MA0035.2	MA0035.2	0.26
MA0038.1	MA0038.1	0.0371
MA0039.2	MA0039.2	0.00311
MA0040.1	MA0040.1	0.528
MA0041.1	MA0041.1	0.517
MA0042.1	MA0042.1	0.602
MA0043.1	MA0043.1	0.00817
MA0046.1	MA0046.1	0.0641
MA0047.2	MA0047.2	0.136
MA0048.1	MA0048.1	0.164
MA0050.1	MA0050.1	0.0936
MA0051.1	MA0051.1	0.0534
MA0052.1	MA0052.1	4.03618e-5
MA0055.1	MA0055.1	0.673
MA0057.1	MA0057.1	0.439
MA0058.1	MA0058.1	0.0161
MA0059.1	MA0059.1	0.78
MA0060.1	MA0060.1	6.00621e-7
MA0061.1	MA0061.1	0.109
MA0062.2	MA0062.2	0.00155
MA0065.2	MA0065.2	0.541
MA0066.1	MA0066.1	0.614
MA0067.1	MA0067.1	0.00641
MA0068.1	MA0068.1	0.55
MA0069.1	MA0069.1	0.119
MA0070.1	MA0070.1	0.98
MA0071.1	MA0071.1	0.568
MA0072.1	MA0072.1	0.203
MA0073.1	MA0073.1	0.973
MA0074.1	MA0074.1	0.0368
MA0076.1	MA0076.1	0.272
MA0077.1	MA0077.1	0.673
MA0078.1	MA0078.1	0.679
MA0079.2	MA0079.2	0.64
MA0080.2	MA0080.2	6.94865e-9
MA0081.1	MA0081.1	0.00799
MA0083.1	MA0083.1	0.686
MA0084.1	MA0084.1	0.239
MA0087.1	MA0087.1	0.923
MA0088.1	MA0088.1	0.266
MA0090.1	MA0090.1	0.0796
MA0091.1	MA0091.1	3.43923e-4
MA0092.1	MA0092.1	0.722
MA0093.1	MA0093.1	0.0588
MA0099.2	MA0099.2	1.93996e-8
MA0100.1	MA0100.1	0.0712
MA0101.1	MA0101.1	0.00232
MA0102.2	MA0102.2	0.468
MA0103.1	MA0103.1	0.0177
MA0104.2	MA0104.2	0.0426
MA0105.1	MA0105.1	0.747
MA0106.1	MA0106.1	0.117
MA0107.1	MA0107.1	0.00249
MA0108.2	MA0108.2	0.355
MA0111.1	MA0111.1	0.702
MA0112.2	MA0112.2	0.0201
MA0113.1	MA0113.1	0.941
MA0114.1	MA0114.1	0.827
MA0115.1	MA0115.1	0.212
MA0116.1	MA0116.1	0.094
MA0117.1	MA0117.1	0.549
MA0119.1	MA0119.1	0.25
MA0122.1	MA0122.1	0.158
MA0124.1	MA0124.1	0.0737
MA0125.1	MA0125.1	0.293
MA0131.1	MA0131.1	0.717
MA0135.1	MA0135.1	0.0303
MA0136.1	MA0136.1	2.57107e-12
MA0137.2	MA0137.2	0.766
MA0138.2	MA0138.2	0.88
MA0139.1	MA0139.1	0.606
MA0140.1	MA0140.1	0.255
MA0141.1	MA0141.1	0.646
MA0142.1	MA0142.1	0.0301
MA0143.1	MA0143.1	0.762
MA0144.1	MA0144.1	0.646
MA0145.1	MA0145.1	0.522
MA0146.1	MA0146.1	0.0875
MA0147.1	MA0147.1	0.144
MA0148.1	MA0148.1	0.274
MA0149.1	MA0149.1	0.617
MA0150.1	MA0150.1	0.0309
MA0152.1	MA0152.1	0.434
MA0153.1	MA0153.1	0.797
MA0154.1	MA0154.1	0.65
MA0155.1	MA0155.1	0.165
MA0156.1	MA0156.1	2.46623e-9
MA0157.1	MA0157.1	0.0813
MA0159.1	MA0159.1	0.966
MA0160.1	MA0160.1	0.243
MA0162.1	MA0162.1	0.217
MA0163.1	MA0163.1	5.47243e-4
MA0164.1	MA0164.1	0.434
MA0258.1	MA0258.1	0.224
MA0259.1	MA0259.1	0.298

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11976

Novel motif	Logo	P-value
1	1	0.654
10	10	0.52
100	100	0.0671
101	101	0.482
102	102	0.287
103	103	0.696
104	104	0.876
105	105	0.0187
106	106	0.698
107	107	0.39
108	108	0.4
109	109	0.556
11	11	0.431
110	110	0.384
111	111	0.712
112	112	0.402
113	113	0.0293
114	114	0.483
115	115	0.00116
116	116	0.0214
117	117	0.517
118	118	0.837
119	119	0.393
12	12	0.187
120	120	0.206
121	121	0.0666
122	122	0.00341
123	123	0.319
124	124	0.271
125	125	0.247
126	126	0.738
127	127	0.177
128	128	0.185
129	129	0.112
13	13	0.965
130	130	0.917
131	131	0.322
132	132	0.378
133	133	0.809
134	134	0.891
135	135	0.943
136	136	0.0925
137	137	0.0638
138	138	0.939
139	139	0.0881
14	14	0.171
140	140	0.998
141	141	0.598
142	142	0.957
143	143	0.884
144	144	0.182
145	145	0.31
146	146	0.482
147	147	0.583
148	148	0.672
149	149	0.0116
15	15	0.239
150	150	0.287
151	151	0.558
152	152	0.0185
153	153	0.382
154	154	0.985
155	155	0.0836
156	156	0.319
157	157	0.184
158	158	0.0125
159	159	0.577
16	16	0.0376
160	160	0.929
161	161	0.671
162	162	0.47
163	163	0.729
164	164	0.00584
165	165	0.729
166	166	0.112
167	167	0.744
168	168	0.544
169	169	0.0257
17	17	0.942
18	18	0.318
19	19	0.00648
2	2	0.328
20	20	0.635
21	21	0.134
22	22	0.278
23	23	0.919
24	24	0.346
25	25	0.0561
26	26	0.296
27	27	0.887
28	28	0.0914
29	29	0.306
3	3	0.516
30	30	0.939
31	31	0.738
32	32	4.51469e-18
33	33	0.657
34	34	0.881
35	35	0.402
36	36	0.0506
37	37	0.0385
38	38	0.193
39	39	0.519
4	4	0.118
40	40	0.235
41	41	0.0901
42	42	0.57
43	43	0.936
44	44	0.109
45	45	0.384
46	46	0.509
47	47	0.606
48	48	0.89
49	49	0.359
5	5	0.588
50	50	0.794
51	51	0.666
52	52	0.94
53	53	0.312
54	54	0.701
55	55	0.624
56	56	0.94
57	57	0.932
58	58	0.228
59	59	0.169
6	6	0.594
60	60	0.657
61	61	0.664
62	62	0.617
63	63	0.522
64	64	0.68
65	65	0.998
66	66	0.2
67	67	0.757
68	68	0.818
69	69	0.997
7	7	0.0755
70	70	0.942
71	71	0.173
72	72	0.517
73	73	0.00413
74	74	0.0785
75	75	0.373
76	76	0.823
77	77	0.244
78	78	0.208
79	79	0.00235
8	8	0.123
80	80	0.0131
81	81	0.879
82	82	0.383
83	83	0.255
84	84	0.75
85	85	0.416
86	86	0.215
87	87	0.0821
88	88	0.608
89	89	0.2
9	9	0.956
90	90	0.597
91	91	0.634
92	92	0.392
93	93	0.314
94	94	0.732
95	95	0.1
96	96	0.37
97	97	0.84
98	98	0.381
99	99	0.00175

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11976

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000183 human smooth muscle cell of prostate sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
1000487 (smooth muscle cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000183 (human smooth muscle cell of prostate sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002367,UBERON:0001134,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0005156,UBERON:0000077,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0000161,UBERON:0000162,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003102,UBERON:0002036,UBERON:0002385,UBERON:0003929,UBERON:0000486,UBERON:0003104,UBERON:0000914,UBERON:0010147,UBERON:0005256,UBERON:0000925,UBERON:0006598,UBERON:0009846,UBERON:0004185,UBERON:0005157,UBERON:0003937,UBERON:0005399,UBERON:0001015,UBERON:0002532,UBERON:0003353,UBERON:0004902,UBERON:0001555,UBERON:0002329,UBERON:0002204,UBERON:0001008,UBERON:0003101,UBERON:0004122,UBERON:0001353,UBERON:0000163,UBERON:0000079,UBERON:0007026,UBERON:0000383,UBERON:0006866,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0001046,UBERON:0000164,UBERON:0003064,UBERON:0006595,UBERON:0006603,UBERON:0003082,UBERON:0000931,UBERON:0003059,UBERON:0003820,UBERON:0007282,UBERON:0009618,UBERON:0007285,UBERON:0009847
+|DRA_sample_Accession=CAGE@SAMD00005488
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000222,CL:1000487,CL:0000355,CL:0000514
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005488
+|accession_numbers=CAGE;DRX008496;DRR009368;DRZ000793;DRZ002178;DRZ012143;DRZ013528
+|accession_numbers_RNASeq=sRNA-Seq;DRX037245;DRR041611;DRZ007253
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000183
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11335-117F3
 |is_a=EFO:0002091;;FF:0000183
 |is_obsolete=
+|library_id=CNhs11976
+|library_id_phase_based=2:CNhs11976
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11335
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GAGTGG.11335
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11335
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GAGTGG.11335
 |name=Smooth Muscle Cells - Prostate, donor2
 |namespace=FANTOM5
@@ Line 43: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11976,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=117
 |rna_catalog_number=N/A
@@ Line 57: / Line 82: @@
 |rna_tube_id=117F3
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+|rnaseq_library_id=SRhi10014.GAGTGG
 |sample_age=34
+|sample_category=primary cells
 |sample_cell_catalog=CC-2587
 |sample_cell_line=
@@ Line 79: / Line 106: @@
 |top_motifs=TAL1_TCF{3,4,12}:2.58033047666;ALX4:2.31844858469;NKX3-1:1.83942716071;UFEwm:1.83517074604;MYBL2:1.81363812252;ESR1:1.69852742954;KLF4:1.40847075638;TEF:1.37949445114;AIRE:1.36478375992;TOPORS:1.25415858824;PAX1,9:1.23478024008;ZNF238:1.14495926916;NFE2L1:1.1395906409;EN1,2:1.10246565383;XBP1:1.09947956046;GZF1:1.08301103293;TFAP4:1.07258533406;NKX2-2,8:1.06152020016;HOX{A4,D4}:1.03815359903;RXR{A,B,G}:1.00167448684;HSF1,2:0.993400793003;LHX3,4:0.978559958621;EVI1:0.968617710298;HMGA1,2:0.947149440176;EBF1:0.944718340457;PATZ1:0.939699334055;GLI1..3:0.91508733092;TEAD1:0.860347908862;ZNF423:0.842881106242;GFI1B:0.826163704395;IKZF1:0.811511590273;NKX6-1,2:0.766109998449;HES1:0.763618185373;SPZ1:0.74861313684;YY1:0.740433530532;CDC5L:0.716247507608;MAFB:0.704307457651;MYFfamily:0.691396184104;NANOG{mouse}:0.685123713616;NFIX:0.666850052584;HOX{A5,B5}:0.633792935258;ATF6:0.628252019298;NR6A1:0.626372643699;ZNF384:0.622594147325;GTF2A1,2:0.619780693344;DBP:0.612842949459;TLX1..3_NFIC{dimer}:0.610034759745;FOXL1:0.581809007559;NFE2L2:0.543472818338;GTF2I:0.535390992074;TBX4,5:0.517066826073;TP53:0.484738368174;NR3C1:0.472436268535;ZBTB6:0.456465470889;PPARG:0.450587290784;STAT5{A,B}:0.447983502147;PRDM1:0.445274691642;CRX:0.444632813287;PAX5:0.432232779636;ZIC1..3:0.421761634186;NR1H4:0.417245882376;bHLH_family:0.379204408747;TFCP2:0.369912209434;RXRA_VDR{dimer}:0.365592243366;TFAP2{A,C}:0.36182556607;HOXA9_MEIS1:0.333276273881;MZF1:0.311730838329;HLF:0.304573499682;MAZ:0.298191573448;FOXO1,3,4:0.296452247605;SRF:0.294030199635;GATA4:0.290730813594;HMX1:0.272545728933;PAX4:0.257985453822;ELK1,4_GABP{A,B1}:0.247427808288;MTE{core}:0.244230209198;NFATC1..3:0.21070968094;EGR1..3:0.207906355819;TBP:0.1902801934;CEBPA,B_DDIT3:0.188866770319;HAND1,2:0.173157909125;HIC1:0.170650476183;NHLH1,2:0.169758365929;NR5A1,2:0.157976933856;RREB1:0.0993290650648;MTF1:0.0647089329435;TFAP2B:0.0632534618022;CDX1,2,4:0.0503087951243;FOXQ1:0.0442070741659;FOX{I1,J2}:0.0305514924133;STAT2,4,6:0.0295748333907;SOX17:0.029518275306;PITX1..3:0.0235865465768;FOXD3:0.00794990449228;HNF1A:-0.00951355011313;HNF4A_NR2F1,2:-0.01116146078;XCPE1{core}:-0.0156849974501;ZNF143:-0.0491973869151;NRF1:-0.0703185504146;FOXP3:-0.0741108375139;ZBTB16:-0.102473142092;FOXP1:-0.116387074737;PBX1:-0.126879523218;RFX1:-0.147291529566;AHR_ARNT_ARNT2:-0.14934454225;MYB:-0.150261417152;ESRRA:-0.154030938906;TLX2:-0.168565587186;ONECUT1,2:-0.173818969667;PAX6:-0.182391433992;T:-0.182399025855;POU3F1..4:-0.185866222904;NKX3-2:-0.189027780591;REST:-0.197754518627;IRF1,2:-0.202129026289;BACH2:-0.203727055968;DMAP1_NCOR{1,2}_SMARC:-0.210316782083;HIF1A:-0.211719002782;PAX8:-0.226371996884;LMO2:-0.23857820094;NFE2:-0.239340292937;STAT1,3:-0.243570063945;MED-1{core}:-0.247087253555;ZNF148:-0.247394443742;RFX2..5_RFXANK_RFXAP:-0.286123703634;SOX5:-0.341563307172;IRF7:-0.34660054522;HOX{A6,A7,B6,B7}:-0.347542106079;SREBF1,2:-0.37395457512;SMAD1..7,9:-0.376662103599;ZFP161:-0.376918169249;FOS_FOS{B,L1}_JUN{B,D}:-0.3812406382;FOX{D1,D2}:-0.38920754225;CREB1:-0.39018628956;GCM1,2:-0.390342131862;POU6F1:-0.398946582261;FOXM1:-0.404378082442;NFKB1_REL_RELA:-0.41481052921;GFI1:-0.419531695169;ATF2:-0.423009516418;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.436019400335;POU5F1:-0.443764308903;ARID5B:-0.444196651004;SP1:-0.473408571121;RUNX1..3:-0.493287431014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.518734575674;FOSL2:-0.522159664961;AR:-0.532259594569;E2F1..5:-0.544133803866;NFY{A,B,C}:-0.548439496768;TFDP1:-0.567825758245;ELF1,2,4:-0.574854710223;SPI1:-0.592170973424;PRRX1,2:-0.603014161662;ATF4:-0.617950581465;ATF5_CREB3:-0.620400547709;BPTF:-0.626741242917;CUX2:-0.635248157174;SPIB:-0.639263696575;LEF1_TCF7_TCF7L1,2:-0.642608511856;PAX3,7:-0.675768863168;ETS1,2:-0.703633316735;NKX2-3_NKX2-5:-0.704937162621;POU1F1:-0.709994238955;JUN:-0.711911940221;PAX2:-0.730572064674;TGIF1:-0.741366916386;SOX2:-0.775087597847;FOXA2:-0.785600373501;PDX1:-0.793927095963;SNAI1..3:-0.799793980817;FOX{F1,F2,J1}:-0.800024943082;ADNP_IRX_SIX_ZHX:-0.830068020351;GATA6:-0.839674455445;VSX1,2:-0.85629317266;NFIL3:-0.858182645821;ALX1:-0.8582121865;MEF2{A,B,C,D}:-0.870422168456;FOXN1:-0.879810110812;MYOD1:-0.906227683799;SOX{8,9,10}:-0.944119081566;IKZF2:-0.959146650738;ZEB1:-0.967927412369;BREu{core}:-0.987383293665;OCT4_SOX2{dimer}:-0.991015777718;NKX2-1,4:-1.08440639007;EP300:-1.12095861382;POU2F1..3:-1.3519623;RBPJ:-1.41283354908;RORA:-1.4386252608;NANOG:-1.67129160921;HBP1_HMGB_SSRP1_UBTF:-2.01044005743
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11335-117F3;search_select_hide=table117:FF:11335-117F3
 }}

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FF:11335-117F3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:53, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0