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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|DRA_sample_Accession=CAGE@SAMD00005924
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000058,CL:0000063,CL:0000134,CL:0000138,CL:0000144,CL:0000151,CL:0000153,CL:0000219,CL:0000255,CL:0000327,CL:0000447,CL:0000499,CL:0000548,CL:0000667,CL:0000723,CL:0002320,CL:0002371
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005924
|accession_numbers=CAGE;DRX008202;DRR009074;DRZ000499;DRZ001884;DRZ011849;DRZ013234
|accession_numbers_RNASeq=sRNA-Seq;DRX037172;DRR041538;DRZ007180
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000037,FF:0000246
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.88!75.20!PRRX2;;chr9:96717629..96717644,-!p1@BARX1!1.78!59.16!BARX1;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.19!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.63!42.11!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.62!PRRX1;;chr5:134369879..134369898,-!p2@PITX1!1.61!40.11!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.59!57.65!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.53!162.43!CREB3L1;;chr6:19837592..19837621,+!p1@ID4!1.52!189.00!ID4;;chr2:85981107..85981120,+!p3@ATOH8!1.49!29.58!ATOH8;;chr2:45236540..45236577,-!p1@SIX2!1.46!27.57!SIX2;;chr14:61116183..61116208,-!p1@SIX1!1.43!96.26!SIX1;;chr1:170633348..170633399,+!p2@PRRX1!1.43!35.09!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.42!69.18!TWIST1;;chr6:1610293..1610310,+!p1@FOXC1!1.38!38.10!FOXC1;;chr19:13134772..13134822,+!p2@NFIX!1.34!30.58!NFIX;;chr10:63809013..63809041,+!p3@ARID5B!1.31!105.78!ARID5B;;chr17:59477233..59477263,+!p1@TBX2!1.28!55.65!TBX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.22!16.54!GLIS1;;chr1:44513995..44514031,+!p1@KLF17!1.21!15.04!KLF17;;chr21:39821025..39821046,-!p9@ERG!1.19!14.54!ERG;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.06!CREB3L1;;chr1:170632477..170632506,+!p6@PRRX1!1.16!13.54!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.13!12.53!HOXC10;;chr12:53614115..53614154,-!p1@RARG!1.12!65.68!RARG;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.12!12.03!HOXC5;;chr7:27224795..27224840,-!p2@HOXA11!1.12!12.03!HOXA11;;chr2:85981073..85981091,+!p5@ATOH8!1.12!12.03!ATOH8;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.59!OSR1;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.53!PKNOX2;;chr12:54380404..54380433,+!p3@HOXC10!1.10!11.53!HOXC10;;chr8:67525443..67525459,-!p2@MYBL1!1.08!16.54!MYBL1;;chr14:24837368..24837401,+!p1@NFATC4!1.07!25.57!NFATC4;;chr2:85980951..85981004,+!p1@ATOH8!1.07!17.55!ATOH8;;chr15:66994663..66994680,+!p1@SMAD6!1.06!25.07!SMAD6;;chr1:170632959..170632987,+!p4@PRRX1!1.06!11.53!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!1.04!63.67!SNAI2;;chr7:15726296..15726315,-!p1@MEOX2!1.04!10.03!MEOX2;;chr12:54402745..54402788,+!p1@HOXC8!1.04!10.03!HOXC8;;chr1:170633058..170633084,+!p5@PRRX1!1.04!10.03!PRRX1;;chr15:66994561..66994597,+!p2@SMAD6!1.03!23.56!SMAD6;;chr7:44143925..44143970,+!p1@AEBP1!1.02!214.57!AEBP1;;chr7:17338266..17338282,+!p1@AHR!1.02!104.78!AHR;;chr2:239756739..239756755,+!p2@TWIST2!1.02!16.54!TWIST2;;chr7:27224842..27224872,-!p1@HOXA11!1.02!9.53!HOXA11;;chr10:63809077..63809089,+!p5@ARID5B!1.00!20.05!ARID5B;;chr7:27192185..27192209,-!p1@HOXA3!1.00!9.02!HOXA3;;chr7:27213893..27213954,-!p1@HOXA10!1.00!9.02!HOXA10;;chr2:46524537..46524553,+!p1@EPAS1!0.99!891.38!EPAS1;;chr10:63809106..63809127,+!p1@ARID5B!0.98!117.81!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!0.98!28.07!TWIST2;;chr9:96717678..96717689,-!p2@BARX1!0.98!8.52!BARX1;;chr6:1312325..1312340,+!p1@FOXQ1!0.96!13.54!FOXQ1;;chr5:158526459..158526481,-!p2@EBF1!0.96!11.03!EBF1;;chr17:59477275..59477286,+!p3@TBX2!0.96!11.03!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.02!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!0.96!8.02!HOXC10;;chr8:49833978..49833996,-!p1@SNAI2!0.95!167.95!SNAI2;;chr5:158526917..158526932,-!p1@EBF1!0.95!20.05!EBF1;;chr6:1389789..1389821,+!p1@FOXF2!0.95!11.03!FOXF2;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.55!FOXC2;;chr15:67458491..67458505,+!p18@SMAD3!0.93!7.52!SMAD3;;chr7:15726243..15726293,-!p2@MEOX2!0.93!7.52!MEOX2;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.52!PRRX1;;chr18:22932080..22932170,-!p1@ZNF521!0.92!32.59!ZNF521;;chr5:321810..321877,+!p1@AHRR!0.91!23.56!AHRR;;chr15:66994615..66994630,+!p3@SMAD6!0.91!10.53!SMAD6;;chr1:23885981..23886002,-!p1@ID3!0.90!1263.87!ID3;;chr3:157823517..157823562,-!p1@SHOX2!0.90!7.52!SHOX2;;chr16:86600870..86600921,+!p2@FOXC2!0.90!7.02!FOXC2;;chr7:17338324..17338341,+!p3@AHR!0.89!23.56!AHR;;chr7:44143978..44143989,+!p2@AEBP1!0.88!12.53!AEBP1;;chr2:85980919..85980942,+!p4@ATOH8!0.88!7.02!ATOH8;;chr12:54393880..54393962,+!p1@HOXC9!0.88!6.52!HOXC9;;chr1:2985760..2985774,+!p1@PRDM16!0.88!6.52!PRDM16;;chr21:40032558..40032578,-!p5@ERG!0.88!6.52!ERG;;chr10:77161504..77161530,-!p1@ZNF503!0.87!90.24!ZNF503;;chr2:85981222..85981259,+!p2@ATOH8!0.86!10.53!ATOH8;;chr11:65687362..65687436,+!p3@DRAP1!0.85!29.58!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!0.85!7.02!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.02!PRRX1;;chr21:40032884..40032915,-!p2@ERG!0.85!6.02!ERG;;chr2:45236579..45236596,-!p2@SIX2!0.85!6.02!SIX2;;chr17:59529743..59529798,+!p1@TBX4!0.85!6.02!TBX4;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.51!PRRX1;;chr21:40033695..40033712,-!p6@ERG!0.81!5.51!ERG;;chr8:99956662..99956684,+!p1@OSR2!0.80!8.52!OSR2;;chr6:1612248..1612281,+!p2@FOXC1!0.78!5.51!FOXC1;;chr1:170632137..170632172,+!p10@PRRX1!0.78!5.01!PRRX1;;chr15:66994718..66994729,+!p4@SMAD6!0.78!5.01!SMAD6;;chr17:48072574..48072597,-!p1@DLX3!0.78!5.01!DLX3;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.01!HOXD8;;chr1:8938709..8938720,-!p3@ENO1!0.77!260.70!ENO1;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.52!ZFP106;;chr10:63809090..63809097,+!p7@ARID5B!0.74!6.52!ARID5B;;chr10:131762504..131762555,-!p1@EBF3!0.74!4.51!EBF3;;chr2:85981027..85981047,+!p8@ATOH8!0.74!4.51!ATOH8;;chr3:42695180..42695201,+!p2@ZBTB47!0.74!4.51!ZBTB47;;chr6:1389989..1390019,+!p2@FOXF2!0.74!4.51!FOXF2;;chr7:27196267..27196311,-!p1@HOXA7!0.74!4.51!HOXA7;;chr18:22932004..22932021,-!p2@ZNF521!0.74!4.51!ZNF521;;chr21:40032581..40032605,-!p4@ERG!0.74!4.51!ERG;;chr7:19157043..19157088,-!p2@TWIST1!0.73!12.03!TWIST1;;chr19:13136130..13136165,+!p6@NFIX!0.73!6.02!NFIX;;chr2:191878874..191878938,-!p1@STAT1!0.72!261.20!STAT1;;chr1:935467..935484,-!p1@HES4!0.72!21.06!HES4;;chr6:85474299..85474324,-!p1@TBX18!0.72!8.02!TBX18;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.52!FOXD1;;chr9:4300050..4300118,-!p1@GLIS3!0.71!30.58!GLIS3;;chr7:28448965..28448994,+!p2@CREB5!0.71!16.04!CREB5;;chr17:59477197..59477212,+!p2@TBX2!0.71!7.52!TBX2;;chr19:13106214..13106382,+!p1@NFIX!0.70!106.78!NFIX;;chr4:81118647..81118666,+!p1@PRDM8!0.70!5.51!PRDM8;;chr2:85981008..85981025,+!p7@ATOH8!0.70!4.01!ATOH8;;chr7:27205106..27205134,-!p2@HOXA9!0.70!4.01!HOXA9;;chr11:46299443..46299459,+!p4@CREB3L1!0.70!4.01!CREB3L1;;chr14:95236440..95236465,-!p1@GSC!0.70!4.01!GSC;;chr5:72744594..72744609,-!p1@FOXD1!0.68!19.55!FOXD1;;chr19:13134457..13134462,+!p5@NFIX!0.67!7.02!NFIX;;chr12:48298785..48298828,-!p1@VDR!0.66!21.56!VDR;;chr20:48807548..48807572,+!p14@CEBPB!0.66!4.51!CEBPB;;chr19:36134528..36134563,+!p1@ETV2!0.65!11.03!ETV2;;chr18:53068911..53068935,-!p4@TCF4!0.65!4.01!TCF4;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.51!ZNF668;;chr6:1612300..1612324,+!p3@FOXC1!0.65!3.51!FOXC1;;chr7:27196217..27196246,-!p2@HOXA7!0.65!3.51!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!0.65!3.51!HOXA9;;chr1:170632683..170632696,+!p12@PRRX1!0.65!3.51!PRRX1;;chr21:38071430..38071456,+!p1@SIM2!0.65!3.51!SIM2;;chr12:54380036..54380091,+!p4@HOXC10!0.65!3.51!HOXC10;;chr6:21593973..21593988,+!p1@SOX4!0.64!144.39!SOX4;;chr14:62162285..62162296,+!p3@HIF1A!0.64!20.55!HIF1A;;chr12:125003087..125003141,-!p4@NCOR2!0.64!4.51!NCOR2;;chr10:77161533..77161546,-!p2@ZNF503!0.63!15.04!ZNF503;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.03!TRPS1;;chr16:79633894..79633954,-!p3@MAF!0.63!7.02!MAF;;chr6:21597765..21597779,+!p2@SOX4!0.62!30.08!SOX4;;chr5:139487608..139487663,+!p3@PURA!0.62!7.52!PURA;;chr16:79634624..79634642,-!p1@MAF!0.61!14.04!MAF;;chr10:63809134..63809145,+!p6@ARID5B!0.61!8.02!ARID5B;;chr11:46299186..46299195,+!p3@CREB3L1!0.61!3.51!CREB3L1;;chr3:21792585..21792625,-!p2@ZNF385D!0.61!3.51!ZNF385D;;chr12:48298765..48298783,-!p2@VDR!0.60!7.02!VDR;;chr16:54320101..54320125,-!p4@IRX3!0.60!4.51!IRX3;;chr16:54320617..54320643,-!p3@IRX3!0.60!4.01!IRX3;;chr1:23694556..23694584,-!p6@ZNF436!0.60!4.01!ZNF436;;chr2:45236809..45236823,-!p4@SIX2!0.60!3.01!SIX2;;chr6:1612219..1612239,+!p8@FOXC1!0.60!3.01!FOXC1;;chr7:15725757..15725828,-!p5@MEOX2!0.60!3.01!MEOX2;;chr7:15726176..15726191,-!p3@MEOX2!0.60!3.01!MEOX2;;chr7:27212407..27212421,-!p9@HOXA10!0.60!3.01!HOXA10;;chr15:66994885..66994904,+!p7@SMAD6!0.60!3.01!SMAD6;;chr19:13135386..13135435,+!p4@NFIX!0.60!3.01!NFIX;;chr10:63853436..63853442,+!p4@ARID5B!0.59!18.55!ARID5B;;chr13:37494365..37494381,-!p1@SMAD9!0.59!5.51!SMAD9;;chr6:21597370..21597408,+!p5@SOX4!0.59!5.01!SOX4;;chr2:46524865..46524870,+!p9@EPAS1!0.59!3.51!EPAS1;;chr18:77155922..77155939,+!p1@NFATC1!0.58!9.02!NFATC1;;chr12:53625966..53626012,-!p2@RARG!0.58!8.52!RARG;;chr15:80696703..80696754,+!p1@ARNT2!0.58!4.01!ARNT2;;chr19:13136241..13136258,+!p7@NFIX!0.58!4.01!NFIX;;chr14:75894714..75894733,+!p1@JDP2!0.57!94.75!JDP2;;chr9:35732647..35732678,+!p2@CREB3!0.57!18.55!CREB3;;chr22:41777927..41777971,+!p1@TEF!0.56!27.57!TEF;;chr10:44144264..44144286,-!p2@ZNF32!0.56!6.52!ZNF32;;chr11:65686802..65686818,+!p6@DRAP1!0.55!5.01!DRAP1;;chr12:80085061..80085119,-!p6@PAWR!0.55!4.51!PAWR;;chr14:61116168..61116180,-!p2@SIX1!0.55!3.01!SIX1;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.01!BNC1;;chr1:8938736..8938756,-!p1@ENO1!0.54!3464.75!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.54!4.51!MEIS3;;chr6:21597283..21597312,+!p7@SOX4!0.54!3.51!SOX4;;chr5:134369973..134369984,-!p3@PITX1!0.54!2.51!PITX1;;chr7:15726220..15726236,-!p4@MEOX2!0.54!2.51!MEOX2;;chr7:27195867..27195893,-!p3@HOXA7!0.54!2.51!HOXA7;;chr1:119530636..119530653,-!p2@TBX15!0.54!2.51!TBX15;;chr1:119530857..119530884,-!p4@TBX15!0.54!2.51!TBX15;;chr11:125034586..125034604,+!p3@PKNOX2!0.54!2.51!PKNOX2;;chr11:125034605..125034636,+!p2@PKNOX2!0.54!2.51!PKNOX2;;chr12:80085120..80085156,-!p14@PAWR!0.54!2.51!PAWR;;chr17:59477266..59477273,+!p6@TBX2!0.54!2.51!TBX2;;chr18:42260840..42260860,+!p2@SETBP1!0.54!2.51!SETBP1;;chr2:45236648..45236659,-!p5@SIX2!0.54!2.51!SIX2;;chr2:85981271..85981289,+!p9@ATOH8!0.54!2.51!ATOH8;;chrY:2803415..2803468,+!p1@ZFY!0.54!2.51!ZFY;;chr9:129376201..129376225,+!p1@LMX1B!0.54!2.51!LMX1B;;chrY:21906594..21906622,-!p1@KDM5D!0.54!2.51!KDM5D;;chr5:43067636..43067674,+!p6@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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor2.CNhs11372.11338-117F6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor2.CNhs11372.11338-117F6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor2.CNhs11372.11338-117F6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor2.CNhs11372.11338-117F6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor2.CNhs11372.11338-117F6.hg38.nobarcode.ctss.bed.gz
|id=FF:11338-117F6
|id=FF:11338-117F6
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000246
|is_a=EFO:0002091;;FF:0000246
|is_obsolete=
|library_id=CNhs11372
|library_id_phase_based=2:CNhs11372
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11338
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CTTGTA.11338
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11338
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CTTGTA.11338
|name=Chondrocyte - de diff, donor2
|name=Chondrocyte - de diff, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11372,LSID771,release012,COMPLETED
|profile_hcage=CNhs11372,LSID771,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.141292624435768,0,0.297709602965283,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0231554408610425,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.292210655428634,0,0.17647845120947,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.17647845120947,0,0,0,0,0,0,0,0,0,0,0,0.17647845120947,0,0,0,0.00220271971330321,0,0,0,-0.0584468268118252,-0.122958177091134,0,0,0,0,0.0784430999717637,-0.05023797519616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512913525540505,0,0,0,0.140254611732583,0.347572833010272,0,0,0,0,0,0
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|rna_box=117
|rna_box=117
|rna_catalog_number=CA402-R10a
|rna_catalog_number=CA402-R10a
Line 55: Line 82:
|rna_tube_id=117F6
|rna_tube_id=117F6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10011.CTTGTA
|sample_age=60
|sample_age=60
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=B
|sample_ethnicity=B
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.69021066349845e-213!GO:0005737;cytoplasm;5.46625636717164e-183!GO:0043226;organelle;2.52447799560426e-151!GO:0043229;intracellular organelle;4.60731178973625e-151!GO:0043231;intracellular membrane-bound organelle;6.05517857409592e-150!GO:0043227;membrane-bound organelle;1.22154018869074e-149!GO:0044444;cytoplasmic part;2.95940043868378e-139!GO:0044422;organelle part;2.58114246169838e-110!GO:0044446;intracellular organelle part;5.11728943980274e-109!GO:0032991;macromolecular complex;1.26458026706691e-78!GO:0005515;protein binding;3.80488702054591e-78!GO:0030529;ribonucleoprotein complex;1.95255516906413e-73!GO:0044237;cellular metabolic process;2.69783798017734e-69!GO:0044238;primary metabolic process;8.81472031625983e-69!GO:0005739;mitochondrion;1.70922689683341e-64!GO:0043170;macromolecule metabolic process;1.60261628114428e-63!GO:0043233;organelle lumen;8.8984689874968e-60!GO:0031974;membrane-enclosed lumen;8.8984689874968e-60!GO:0003723;RNA binding;2.83996240136651e-56!GO:0044428;nuclear part;1.86350764133718e-50!GO:0019538;protein metabolic process;3.90179508480081e-48!GO:0005840;ribosome;7.96099403749527e-48!GO:0031090;organelle membrane;8.69835343112951e-48!GO:0006412;translation;2.62886445859235e-45!GO:0044429;mitochondrial part;4.32173644605233e-43!GO:0005634;nucleus;6.91699421505728e-43!GO:0003735;structural constituent of ribosome;7.85896097706609e-43!GO:0044260;cellular macromolecule metabolic process;1.45809200086085e-42!GO:0016043;cellular component organization and biogenesis;1.97245253617802e-42!GO:0015031;protein transport;5.17968149100563e-42!GO:0044267;cellular protein metabolic process;3.33299345167989e-41!GO:0033036;macromolecule localization;5.19430833101304e-41!GO:0005829;cytosol;2.95537052196063e-39!GO:0045184;establishment of protein localization;2.95537052196063e-39!GO:0043234;protein complex;6.02284100628693e-39!GO:0008104;protein localization;8.40394585237004e-39!GO:0033279;ribosomal subunit;1.05420753411334e-38!GO:0009058;biosynthetic process;3.12081112983214e-38!GO:0009059;macromolecule biosynthetic process;1.15513554175835e-37!GO:0044249;cellular biosynthetic process;7.70047244407063e-37!GO:0031967;organelle envelope;4.19700002075638e-34!GO:0031975;envelope;9.32786720771654e-34!GO:0006396;RNA processing;1.17767032386711e-33!GO:0031981;nuclear lumen;2.46187689830606e-32!GO:0046907;intracellular transport;5.30822033770885e-30!GO:0005740;mitochondrial envelope;2.65806798517523e-28!GO:0043283;biopolymer metabolic process;3.24080396135965e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.21403697909563e-28!GO:0010467;gene expression;9.45027663423656e-28!GO:0016071;mRNA metabolic process;1.39017307937363e-27!GO:0006886;intracellular protein transport;6.57338972456444e-27!GO:0031966;mitochondrial membrane;8.38372542347756e-27!GO:0065003;macromolecular complex assembly;1.11641007291754e-25!GO:0008380;RNA splicing;2.50824118990231e-25!GO:0019866;organelle inner membrane;2.92151926608703e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.43781080932587e-24!GO:0005743;mitochondrial inner membrane;4.79873163646313e-24!GO:0006397;mRNA processing;3.17152639175632e-23!GO:0005783;endoplasmic reticulum;3.87710917012288e-23!GO:0022607;cellular component assembly;1.54480625038181e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.33412823340467e-22!GO:0044445;cytosolic part;8.25890729214107e-22!GO:0006119;oxidative phosphorylation;3.7234809886411e-21!GO:0006996;organelle organization and biogenesis;5.30419637430674e-21!GO:0043228;non-membrane-bound organelle;5.25803354578306e-20!GO:0043232;intracellular non-membrane-bound organelle;5.25803354578306e-20!GO:0015934;large ribosomal subunit;6.33911871315339e-20!GO:0015935;small ribosomal subunit;9.90214659930665e-20!GO:0044455;mitochondrial membrane part;1.31163596175507e-19!GO:0005654;nucleoplasm;3.16831079371714e-19!GO:0006457;protein folding;6.15807782520873e-19!GO:0005681;spliceosome;6.31825895894033e-19!GO:0048770;pigment granule;3.94062928971057e-18!GO:0042470;melanosome;3.94062928971057e-18!GO:0051649;establishment of cellular localization;4.25295315101137e-18!GO:0051641;cellular localization;5.01776661674095e-18!GO:0005794;Golgi apparatus;1.01763266867773e-17!GO:0031980;mitochondrial lumen;1.01763266867773e-17!GO:0005759;mitochondrial matrix;1.01763266867773e-17!GO:0012505;endomembrane system;1.61205757220773e-17!GO:0044432;endoplasmic reticulum part;3.39464571771519e-17!GO:0016462;pyrophosphatase activity;4.16743346485418e-17!GO:0016874;ligase activity;4.23563922140762e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.30299323141397e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.10300465539887e-17!GO:0005746;mitochondrial respiratory chain;9.48207010613717e-17!GO:0017111;nucleoside-triphosphatase activity;1.82703779055246e-16!GO:0044451;nucleoplasm part;3.33966764183527e-16!GO:0051186;cofactor metabolic process;1.69341652197881e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.92844953285463e-15!GO:0044265;cellular macromolecule catabolic process;2.25686409001652e-15!GO:0022618;protein-RNA complex assembly;2.34602261007726e-15!GO:0006512;ubiquitin cycle;2.72146349548042e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.92375351862853e-15!GO:0000166;nucleotide binding;5.73214121313945e-15!GO:0008134;transcription factor binding;7.43632771263311e-15!GO:0043285;biopolymer catabolic process;8.46825878070557e-15!GO:0006605;protein targeting;1.21858651482204e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.38144925327912e-14!GO:0009057;macromolecule catabolic process;2.08432989425414e-14!GO:0044248;cellular catabolic process;2.45817246155314e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.51376191466856e-14!GO:0003954;NADH dehydrogenase activity;3.51376191466856e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.51376191466856e-14!GO:0005730;nucleolus;3.75781799565392e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.16589115678395e-14!GO:0008135;translation factor activity, nucleic acid binding;7.19970160722858e-14!GO:0006259;DNA metabolic process;1.58440678915811e-13!GO:0005761;mitochondrial ribosome;1.65490188793528e-13!GO:0000313;organellar ribosome;1.65490188793528e-13!GO:0051082;unfolded protein binding;2.14335856586161e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.4805607949122e-13!GO:0016192;vesicle-mediated transport;4.6093384614289e-13!GO:0019941;modification-dependent protein catabolic process;5.1306398436279e-13!GO:0043632;modification-dependent macromolecule catabolic process;5.1306398436279e-13!GO:0006511;ubiquitin-dependent protein catabolic process;5.43972604431012e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.70861766626134e-13!GO:0044257;cellular protein catabolic process;5.88502467159764e-13!GO:0048193;Golgi vesicle transport;7.99190976788661e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.69095632860241e-12!GO:0042773;ATP synthesis coupled electron transport;1.69095632860241e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.77371852483914e-12!GO:0045271;respiratory chain complex I;1.77371852483914e-12!GO:0005747;mitochondrial respiratory chain complex I;1.77371852483914e-12!GO:0030163;protein catabolic process;2.35914317045534e-12!GO:0006732;coenzyme metabolic process;3.36175200795993e-12!GO:0003676;nucleic acid binding;5.5603968210983e-12!GO:0009055;electron carrier activity;5.93867209127326e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.93867209127326e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.36319435635236e-11!GO:0005793;ER-Golgi intermediate compartment;1.62438393889161e-11!GO:0005789;endoplasmic reticulum membrane;2.94590884497855e-11!GO:0012501;programmed cell death;5.98528660202066e-11!GO:0017076;purine nucleotide binding;9.91224730801705e-11!GO:0006915;apoptosis;1.23156701931718e-10!GO:0043412;biopolymer modification;1.47032710458813e-10!GO:0003743;translation initiation factor activity;1.54044358997895e-10!GO:0032553;ribonucleotide binding;1.68484363550866e-10!GO:0032555;purine ribonucleotide binding;1.68484363550866e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.02733986108906e-10!GO:0000375;RNA splicing, via transesterification reactions;4.02733986108906e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.02733986108906e-10!GO:0008219;cell death;4.48257773953218e-10!GO:0016265;death;4.48257773953218e-10!GO:0016070;RNA metabolic process;6.46714441906921e-10!GO:0042254;ribosome biogenesis and assembly;6.99967220456963e-10!GO:0006413;translational initiation;7.64045169302259e-10!GO:0016491;oxidoreductase activity;8.9331875216143e-10!GO:0006464;protein modification process;1.06110327487184e-09!GO:0006913;nucleocytoplasmic transport;1.60825920867981e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.6268582503856e-09!GO:0048523;negative regulation of cellular process;1.78222612763126e-09!GO:0045333;cellular respiration;2.01516208174619e-09!GO:0003712;transcription cofactor activity;2.23461945390392e-09!GO:0009259;ribonucleotide metabolic process;3.05201006458665e-09!GO:0051169;nuclear transport;3.05201006458665e-09!GO:0008639;small protein conjugating enzyme activity;3.59943958248247e-09!GO:0009056;catabolic process;3.94076050285737e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.04682110449481e-09!GO:0008565;protein transporter activity;4.53252935875572e-09!GO:0006461;protein complex assembly;4.559058393852e-09!GO:0006163;purine nucleotide metabolic process;5.40794562985099e-09!GO:0009060;aerobic respiration;5.42780384197605e-09!GO:0019787;small conjugating protein ligase activity;5.45786896126553e-09!GO:0009150;purine ribonucleotide metabolic process;5.77864063198004e-09!GO:0004842;ubiquitin-protein ligase activity;6.10489126963615e-09!GO:0017038;protein import;6.29203355165971e-09!GO:0005768;endosome;7.4551838292312e-09!GO:0005788;endoplasmic reticulum lumen;8.39397568196178e-09!GO:0008361;regulation of cell size;8.53026859184859e-09!GO:0016049;cell growth;8.8504223668479e-09!GO:0006446;regulation of translational initiation;9.59690863628487e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17030629545e-08!GO:0007049;cell cycle;2.08345339868283e-08!GO:0006164;purine nucleotide biosynthetic process;2.4262776199966e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.51703978448102e-08!GO:0043687;post-translational protein modification;3.03227095758801e-08!GO:0009260;ribonucleotide biosynthetic process;3.03227095758801e-08!GO:0042623;ATPase activity, coupled;3.16821477302395e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.66882326363302e-08!GO:0030120;vesicle coat;3.74877137769353e-08!GO:0030662;coated vesicle membrane;3.74877137769353e-08!GO:0009141;nucleoside triphosphate metabolic process;4.56658480154235e-08!GO:0016881;acid-amino acid ligase activity;4.56928022687096e-08!GO:0003924;GTPase activity;4.7857279615479e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.96597609659905e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.96597609659905e-08!GO:0015986;ATP synthesis coupled proton transport;5.66566683199306e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.66566683199306e-08!GO:0042981;regulation of apoptosis;6.06971736321998e-08!GO:0016887;ATPase activity;6.16185274937087e-08!GO:0043067;regulation of programmed cell death;7.14550970285553e-08!GO:0048519;negative regulation of biological process;8.80089548240845e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.90227317416854e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.90227317416854e-08!GO:0016604;nuclear body;8.97426566657595e-08!GO:0006366;transcription from RNA polymerase II promoter;9.87505213920266e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.19489890998202e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.19489890998202e-07!GO:0048475;coated membrane;1.19489890998202e-07!GO:0030117;membrane coat;1.19489890998202e-07!GO:0001558;regulation of cell growth;1.27936756262342e-07!GO:0005524;ATP binding;1.28551792630712e-07!GO:0030554;adenyl nucleotide binding;1.50517943012436e-07!GO:0019829;cation-transporting ATPase activity;1.62935517898308e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.69345577255832e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.69345577255832e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.69345577255832e-07!GO:0031965;nuclear membrane;1.96843018290718e-07!GO:0032559;adenyl ribonucleotide binding;1.98836699954383e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.21116122404867e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.54441203176832e-07!GO:0051187;cofactor catabolic process;2.64647224368792e-07!GO:0044453;nuclear membrane part;2.77688611819204e-07!GO:0005773;vacuole;2.77764275406232e-07!GO:0008026;ATP-dependent helicase activity;2.79916882646374e-07!GO:0051188;cofactor biosynthetic process;2.86424883767764e-07!GO:0043038;amino acid activation;2.88950017305108e-07!GO:0006418;tRNA aminoacylation for protein translation;2.88950017305108e-07!GO:0043039;tRNA aminoacylation;2.88950017305108e-07!GO:0005635;nuclear envelope;3.08352005699956e-07!GO:0006974;response to DNA damage stimulus;3.1083732079783e-07!GO:0051246;regulation of protein metabolic process;3.1693728913878e-07!GO:0006091;generation of precursor metabolites and energy;3.20737265100404e-07!GO:0046034;ATP metabolic process;3.23966096048525e-07!GO:0006099;tricarboxylic acid cycle;3.28754479939055e-07!GO:0046356;acetyl-CoA catabolic process;3.28754479939055e-07!GO:0044431;Golgi apparatus part;3.34708155034388e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.01611582708803e-07!GO:0009109;coenzyme catabolic process;5.87112191728365e-07!GO:0043069;negative regulation of programmed cell death;6.70433458172113e-07!GO:0006754;ATP biosynthetic process;6.80715748363622e-07!GO:0006753;nucleoside phosphate metabolic process;6.80715748363622e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.66955974758276e-07!GO:0006399;tRNA metabolic process;9.50150905222604e-07!GO:0043066;negative regulation of apoptosis;1.04628539708853e-06!GO:0006084;acetyl-CoA metabolic process;1.15421997293436e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.23535369730467e-06!GO:0044262;cellular carbohydrate metabolic process;1.27801240933429e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.46761498402219e-06!GO:0031988;membrane-bound vesicle;1.99303067939342e-06!GO:0015980;energy derivation by oxidation of organic compounds;2.12108940707943e-06!GO:0006916;anti-apoptosis;2.15877807671998e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.17271498362352e-06!GO:0004386;helicase activity;2.53378730857785e-06!GO:0065002;intracellular protein transport across a membrane;2.67867714525585e-06!GO:0006364;rRNA processing;2.86996534159633e-06!GO:0031252;leading edge;2.86996534159633e-06!GO:0009117;nucleotide metabolic process;2.9390949397899e-06!GO:0000323;lytic vacuole;3.69816529456467e-06!GO:0005764;lysosome;3.69816529456467e-06!GO:0040008;regulation of growth;3.89329975631551e-06!GO:0004298;threonine endopeptidase activity;4.23365384437344e-06!GO:0016607;nuclear speck;4.26285617678132e-06!GO:0005798;Golgi-associated vesicle;4.36439446580036e-06!GO:0007005;mitochondrion organization and biogenesis;4.5508664744651e-06!GO:0016072;rRNA metabolic process;4.5508664744651e-06!GO:0022402;cell cycle process;5.04917210289078e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;5.2397495964594e-06!GO:0050794;regulation of cellular process;5.60862590615003e-06!GO:0005643;nuclear pore;6.02964409969855e-06!GO:0051170;nuclear import;6.11348249004298e-06!GO:0031410;cytoplasmic vesicle;6.68111176251793e-06!GO:0044440;endosomal part;6.91073683872394e-06!GO:0010008;endosome membrane;6.91073683872394e-06!GO:0031982;vesicle;7.05126857725867e-06!GO:0006606;protein import into nucleus;7.42822361775204e-06!GO:0016567;protein ubiquitination;7.56966831356251e-06!GO:0009719;response to endogenous stimulus;7.59044052325888e-06!GO:0045259;proton-transporting ATP synthase complex;7.85237074561782e-06!GO:0032446;protein modification by small protein conjugation;8.41125409216356e-06!GO:0051726;regulation of cell cycle;9.41240325780673e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.88359072015338e-06!GO:0016787;hydrolase activity;1.04712964884827e-05!GO:0005762;mitochondrial large ribosomal subunit;1.08927767087054e-05!GO:0000315;organellar large ribosomal subunit;1.08927767087054e-05!GO:0016564;transcription repressor activity;1.1836120530122e-05!GO:0006752;group transfer coenzyme metabolic process;1.19005013437726e-05!GO:0005525;GTP binding;1.19138879207762e-05!GO:0005770;late endosome;1.20312214316468e-05!GO:0000151;ubiquitin ligase complex;1.22602320943557e-05!GO:0003714;transcription corepressor activity;1.23403869859439e-05!GO:0000074;regulation of progression through cell cycle;1.27019831086839e-05!GO:0009108;coenzyme biosynthetic process;1.27733455658493e-05!GO:0006323;DNA packaging;1.32790567145833e-05!GO:0051789;response to protein stimulus;1.40871217573853e-05!GO:0006986;response to unfolded protein;1.40871217573853e-05!GO:0045454;cell redox homeostasis;1.41794377148507e-05!GO:0006281;DNA repair;1.75707956459327e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.75707956459327e-05!GO:0045786;negative regulation of progression through cell cycle;2.0078343804005e-05!GO:0031324;negative regulation of cellular metabolic process;2.2603010500289e-05!GO:0008654;phospholipid biosynthetic process;2.58987416578146e-05!GO:0046930;pore complex;2.96501138991742e-05!GO:0003697;single-stranded DNA binding;3.02569979286499e-05!GO:0000139;Golgi membrane;3.02819869074712e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.06362361975304e-05!GO:0019843;rRNA binding;3.23609371736924e-05!GO:0016853;isomerase activity;3.80680730373937e-05!GO:0005905;coated pit;4.15684867501504e-05!GO:0000245;spliceosome assembly;4.56182967731083e-05!GO:0005667;transcription factor complex;4.79021923948829e-05!GO:0006613;cotranslational protein targeting to membrane;5.10088847088433e-05!GO:0000278;mitotic cell cycle;6.27804994410952e-05!GO:0006793;phosphorus metabolic process;6.52451475610589e-05!GO:0006796;phosphate metabolic process;6.52451475610589e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.54974737106678e-05!GO:0030867;rough endoplasmic reticulum membrane;6.68218635731397e-05!GO:0003724;RNA helicase activity;6.792656184132e-05!GO:0043623;cellular protein complex assembly;8.30202708240328e-05!GO:0051276;chromosome organization and biogenesis;8.3339848266356e-05!GO:0043566;structure-specific DNA binding;8.40243612050143e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.60669343125882e-05!GO:0030133;transport vesicle;8.69003478970272e-05!GO:0019867;outer membrane;8.69003478970272e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.03955179133016e-05!GO:0065004;protein-DNA complex assembly;9.14283690505323e-05!GO:0016568;chromatin modification;9.49609209893298e-05!GO:0032561;guanyl ribonucleotide binding;9.68675745757232e-05!GO:0019001;guanyl nucleotide binding;9.68675745757232e-05!GO:0031968;organelle outer membrane;0.000107838539308723!GO:0005769;early endosome;0.000115204974438793!GO:0033116;ER-Golgi intermediate compartment membrane;0.000130512823992756!GO:0003713;transcription coactivator activity;0.000166490061692175!GO:0016310;phosphorylation;0.000167918427082632!GO:0048522;positive regulation of cellular process;0.000181715666765715!GO:0005741;mitochondrial outer membrane;0.000196063485477764!GO:0009892;negative regulation of metabolic process;0.000208544052792583!GO:0050657;nucleic acid transport;0.0002105124687315!GO:0051236;establishment of RNA localization;0.0002105124687315!GO:0050658;RNA transport;0.0002105124687315!GO:0050789;regulation of biological process;0.000211742966461028!GO:0000314;organellar small ribosomal subunit;0.000236749858423467!GO:0005763;mitochondrial small ribosomal subunit;0.000236749858423467!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000245866747652404!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000245866747652404!GO:0016044;membrane organization and biogenesis;0.000248330069180425!GO:0019752;carboxylic acid metabolic process;0.00025780633787825!GO:0006403;RNA localization;0.000262265329771406!GO:0016859;cis-trans isomerase activity;0.000290302004269526!GO:0007243;protein kinase cascade;0.000292887933219694!GO:0006082;organic acid metabolic process;0.000303649258543713!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000341300129702975!GO:0030663;COPI coated vesicle membrane;0.000347076495026071!GO:0030126;COPI vesicle coat;0.000347076495026071!GO:0043021;ribonucleoprotein binding;0.000374582374653287!GO:0005048;signal sequence binding;0.000376719521248341!GO:0006260;DNA replication;0.000385875983706075!GO:0051427;hormone receptor binding;0.000396591100435317!GO:0016563;transcription activator activity;0.00045634260144494!GO:0046474;glycerophospholipid biosynthetic process;0.00046231915158629!GO:0005791;rough endoplasmic reticulum;0.000511079164395113!GO:0005885;Arp2/3 protein complex;0.000514651846864175!GO:0030029;actin filament-based process;0.000543003059906217!GO:0008092;cytoskeletal protein binding;0.000592674224508096!GO:0016481;negative regulation of transcription;0.000611552938314982!GO:0030137;COPI-coated vesicle;0.000638868338952376!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000676633347422403!GO:0008250;oligosaccharyl transferase complex;0.000676633347422403!GO:0007264;small GTPase mediated signal transduction;0.000678853351093047!GO:0006612;protein targeting to membrane;0.000692384852975692!GO:0016740;transferase activity;0.000692384852975692!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000714760146009452!GO:0043681;protein import into mitochondrion;0.000719067249008514!GO:0004576;oligosaccharyl transferase activity;0.00073157918656274!GO:0035257;nuclear hormone receptor binding;0.000775386274459206!GO:0008186;RNA-dependent ATPase activity;0.000778256821562821!GO:0043284;biopolymer biosynthetic process;0.000913925089804927!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000916563711723927!GO:0003899;DNA-directed RNA polymerase activity;0.000924488064486603!GO:0051920;peroxiredoxin activity;0.000925121458423858!GO:0019899;enzyme binding;0.00097014645198092!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00097651560761801!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000985274510554981!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000989974014891033!GO:0006333;chromatin assembly or disassembly;0.000989974014891033!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00116970918115419!GO:0015399;primary active transmembrane transporter activity;0.00116970918115419!GO:0015630;microtubule cytoskeleton;0.00124352021277959!GO:0046489;phosphoinositide biosynthetic process;0.00126379385860009!GO:0006414;translational elongation;0.00132530429084778!GO:0048471;perinuclear region of cytoplasm;0.00137897926198631!GO:0005520;insulin-like growth factor binding;0.0014992808884862!GO:0016779;nucleotidyltransferase activity;0.0015663335022892!GO:0030132;clathrin coat of coated pit;0.00162051648209465!GO:0030027;lamellipodium;0.00162441551633677!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00178988351791404!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00185290086456188!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00185290086456188!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00185290086456188!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00193482502658257!GO:0005813;centrosome;0.00194010842887849!GO:0004004;ATP-dependent RNA helicase activity;0.00203374859745031!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00217632603624617!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00217632603624617!GO:0006979;response to oxidative stress;0.00227789275062036!GO:0030118;clathrin coat;0.00247547050804835!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00249475161850677!GO:0018196;peptidyl-asparagine modification;0.00261341781728255!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00261341781728255!GO:0051028;mRNA transport;0.00263404374390464!GO:0030658;transport vesicle membrane;0.00270915289841309!GO:0006118;electron transport;0.0027539869565302!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.002797627888121!GO:0022890;inorganic cation transmembrane transporter activity;0.00281747894017306!GO:0006891;intra-Golgi vesicle-mediated transport;0.00281747894017306!GO:0031543;peptidyl-proline dioxygenase activity;0.00283709701875978!GO:0031072;heat shock protein binding;0.00285275943480084!GO:0051329;interphase of mitotic cell cycle;0.00285275943480084!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00302928617722972!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00308215977819652!GO:0005815;microtubule organizing center;0.00326227785341655!GO:0001726;ruffle;0.0032918352301435!GO:0046467;membrane lipid biosynthetic process;0.00332640739017246!GO:0051325;interphase;0.00332640739017246!GO:0043433;negative regulation of transcription factor activity;0.00332640739017246!GO:0006383;transcription from RNA polymerase III promoter;0.00333497449375897!GO:0006626;protein targeting to mitochondrion;0.00337101940449856!GO:0030880;RNA polymerase complex;0.00339680664495917!GO:0007050;cell cycle arrest;0.00371862889092954!GO:0051168;nuclear export;0.00380611317040919!GO:0031418;L-ascorbic acid binding;0.00380865642657749!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00384577632685542!GO:0007006;mitochondrial membrane organization and biogenesis;0.0040066692115228!GO:0009165;nucleotide biosynthetic process;0.00444795872881961!GO:0048518;positive regulation of biological process;0.00449276092425981!GO:0051252;regulation of RNA metabolic process;0.00457136631954306!GO:0045792;negative regulation of cell size;0.00459687524684115!GO:0005694;chromosome;0.00464220191211721!GO:0006650;glycerophospholipid metabolic process;0.00464220191211721!GO:0006740;NADPH regeneration;0.00466079186413461!GO:0006098;pentose-phosphate shunt;0.00466079186413461!GO:0065009;regulation of a molecular function;0.00471144352779641!GO:0003746;translation elongation factor activity;0.0047568945513574!GO:0050662;coenzyme binding;0.00483934908110621!GO:0007010;cytoskeleton organization and biogenesis;0.0048827744793663!GO:0035258;steroid hormone receptor binding;0.00489114926110365!GO:0005583;fibrillar collagen;0.0049713278789626!GO:0030308;negative regulation of cell growth;0.00500507728510907!GO:0019798;procollagen-proline dioxygenase activity;0.00513385738788774!GO:0044420;extracellular matrix part;0.00519904729811946!GO:0043488;regulation of mRNA stability;0.0052180193881563!GO:0043487;regulation of RNA stability;0.0052180193881563!GO:0006509;membrane protein ectodomain proteolysis;0.00539800627459517!GO:0033619;membrane protein proteolysis;0.00539800627459517!GO:0048468;cell development;0.00553977804751076!GO:0007040;lysosome organization and biogenesis;0.00561089673119416!GO:0030521;androgen receptor signaling pathway;0.00565940675907635!GO:0046483;heterocycle metabolic process;0.00611477453986548!GO:0000059;protein import into nucleus, docking;0.0061855144733888!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00620218126615083!GO:0015002;heme-copper terminal oxidase activity;0.00620218126615083!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00620218126615083!GO:0004129;cytochrome-c oxidase activity;0.00620218126615083!GO:0000785;chromatin;0.00621704161728237!GO:0005581;collagen;0.00627554054735043!GO:0043492;ATPase activity, coupled to movement of substances;0.00669497437785526!GO:0051287;NAD binding;0.00685444011802758!GO:0005975;carbohydrate metabolic process;0.0069340949282028!GO:0019318;hexose metabolic process;0.00694035156920115!GO:0048500;signal recognition particle;0.00703124732053441!GO:0005996;monosaccharide metabolic process;0.00704019943837112!GO:0007033;vacuole organization and biogenesis;0.00706650370561312!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00706723594855657!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00706723594855657!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0070963387735802!GO:0030660;Golgi-associated vesicle membrane;0.00715925021678436!GO:0006818;hydrogen transport;0.00726626877595334!GO:0005774;vacuolar membrane;0.00727440946397381!GO:0008484;sulfuric ester hydrolase activity;0.00733428757228974!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00734256155956962!GO:0000428;DNA-directed RNA polymerase complex;0.00734256155956962!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00734256155956962!GO:0015992;proton transport;0.0074271698251444!GO:0008154;actin polymerization and/or depolymerization;0.00756621437453179!GO:0006839;mitochondrial transport;0.00761776835438876!GO:0006354;RNA elongation;0.00792882544855414!GO:0048487;beta-tubulin binding;0.00793391071473659!GO:0030134;ER to Golgi transport vesicle;0.00821950591784838!GO:0017166;vinculin binding;0.00854553885412217!GO:0008632;apoptotic program;0.00858321392154962!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00864513099248423!GO:0006334;nucleosome assembly;0.00914361620670636!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00933226848929491!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00933226848929491!GO:0031902;late endosome membrane;0.00933226848929491!GO:0006402;mRNA catabolic process;0.00959926284102266!GO:0030119;AP-type membrane coat adaptor complex;0.00963037519275621!GO:0030176;integral to endoplasmic reticulum membrane;0.00985741329709726!GO:0006497;protein amino acid lipidation;0.00985741329709726!GO:0045892;negative regulation of transcription, DNA-dependent;0.00986512237947271!GO:0005869;dynactin complex;0.00989495712413387!GO:0051087;chaperone binding;0.00991121763403242!GO:0003729;mRNA binding;0.0102785461295707!GO:0006352;transcription initiation;0.0104892963643717!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0106038091313818!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0109885722630617!GO:0043065;positive regulation of apoptosis;0.0110746339777116!GO:0030041;actin filament polymerization;0.011095102624828!GO:0016363;nuclear matrix;0.0110969453417535!GO:0030384;phosphoinositide metabolic process;0.0111453001770348!GO:0016197;endosome transport;0.0114946902400033!GO:0031497;chromatin assembly;0.0116715420432649!GO:0030125;clathrin vesicle coat;0.011729552551709!GO:0030665;clathrin coated vesicle membrane;0.011729552551709!GO:0006897;endocytosis;0.011729552551709!GO:0010324;membrane invagination;0.011729552551709!GO:0000287;magnesium ion binding;0.0118122220604431!GO:0006289;nucleotide-excision repair;0.0119441753320814!GO:0006595;polyamine metabolic process;0.0120102138275516!GO:0008139;nuclear localization sequence binding;0.0120542177484739!GO:0016408;C-acyltransferase activity;0.0120766370557627!GO:0030199;collagen fibril organization;0.0124364919331386!GO:0006950;response to stress;0.012562480474584!GO:0030131;clathrin adaptor complex;0.0126017063903726!GO:0045893;positive regulation of transcription, DNA-dependent;0.0126218917266746!GO:0051128;regulation of cellular component organization and biogenesis;0.012846958602596!GO:0051540;metal cluster binding;0.012912407791081!GO:0051536;iron-sulfur cluster binding;0.012912407791081!GO:0006401;RNA catabolic process;0.0132121836453536!GO:0030127;COPII vesicle coat;0.0132530006415455!GO:0012507;ER to Golgi transport vesicle membrane;0.0132530006415455!GO:0003711;transcription elongation regulator activity;0.0132681874636492!GO:0030659;cytoplasmic vesicle membrane;0.0133424163313074!GO:0006506;GPI anchor biosynthetic process;0.0134293433800043!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0134293433800043!GO:0045047;protein targeting to ER;0.0134293433800043!GO:0006778;porphyrin metabolic process;0.0139413228918353!GO:0033013;tetrapyrrole metabolic process;0.0139413228918353!GO:0043068;positive regulation of programmed cell death;0.0139775409505687!GO:0000049;tRNA binding;0.0139775409505687!GO:0006520;amino acid metabolic process;0.0139813533291926!GO:0007265;Ras protein signal transduction;0.0142568780992025!GO:0035035;histone acetyltransferase binding;0.0143540247801203!GO:0008180;signalosome;0.0143783067072476!GO:0015631;tubulin binding;0.0147152176603193!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0147667689027102!GO:0045926;negative regulation of growth;0.0149700796628338!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0150879701360322!GO:0007034;vacuolar transport;0.015335028808426!GO:0000096;sulfur amino acid metabolic process;0.0153995484692018!GO:0050811;GABA receptor binding;0.0154165027897237!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0155720469165724!GO:0044437;vacuolar part;0.0158931794390913!GO:0042168;heme metabolic process;0.0160440786001334!GO:0043022;ribosome binding;0.0161616771109198!GO:0006007;glucose catabolic process;0.0161616771109198!GO:0045941;positive regulation of transcription;0.0162395436534504!GO:0005862;muscle thin filament tropomyosin;0.0162896331159533!GO:0030145;manganese ion binding;0.0164938248256218!GO:0006505;GPI anchor metabolic process;0.0166093760594545!GO:0051101;regulation of DNA binding;0.0166598477390066!GO:0051539;4 iron, 4 sulfur cluster binding;0.0168447231132162!GO:0031529;ruffle organization and biogenesis;0.0169369609456126!GO:0051098;regulation of binding;0.0174520506003427!GO:0044427;chromosomal part;0.0180197914633579!GO:0008610;lipid biosynthetic process;0.018285179238441!GO:0006790;sulfur metabolic process;0.0183393466234165!GO:0008652;amino acid biosynthetic process;0.0184915301380493!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0187113830070867!GO:0005684;U2-dependent spliceosome;0.0187113830070867!GO:0006739;NADP metabolic process;0.0187547337755807!GO:0048037;cofactor binding;0.0188770798205019!GO:0022403;cell cycle phase;0.0190465670647347!GO:0042158;lipoprotein biosynthetic process;0.0190465670647347!GO:0008312;7S RNA binding;0.0191897569976636!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0195295402551574!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0198248669112948!GO:0050681;androgen receptor binding;0.0201150991433734!GO:0044452;nucleolar part;0.020351351113988!GO:0030518;steroid hormone receptor signaling pathway;0.020351351113988!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0209960280592722!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0209960280592722!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0210502998614575!GO:0003690;double-stranded DNA binding;0.0214415020076044!GO:0005832;chaperonin-containing T-complex;0.0222169120189715!GO:0065007;biological regulation;0.0223214428494123!GO:0005765;lysosomal membrane;0.0224915787527383!GO:0005586;collagen type III;0.0232090424460036!GO:0000209;protein polyubiquitination;0.0233013695753557!GO:0003756;protein disulfide isomerase activity;0.0233433166408479!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0233433166408479!GO:0000082;G1/S transition of mitotic cell cycle;0.0241857282324292!GO:0003684;damaged DNA binding;0.0242017343901855!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0242017343901855!GO:0033043;regulation of organelle organization and biogenesis;0.0242017343901855!GO:0030503;regulation of cell redox homeostasis;0.0242026648811191!GO:0031625;ubiquitin protein ligase binding;0.0245028824032434!GO:0001666;response to hypoxia;0.0262318544678457!GO:0008147;structural constituent of bone;0.0262598910447758!GO:0007041;lysosomal transport;0.0262779930298326!GO:0019222;regulation of metabolic process;0.0267893124265345!GO:0044433;cytoplasmic vesicle part;0.0271457759997997!GO:0000087;M phase of mitotic cell cycle;0.0276188675421379!GO:0008047;enzyme activator activity;0.0289355378149985!GO:0007030;Golgi organization and biogenesis;0.0289715315356587!GO:0009112;nucleobase metabolic process;0.0293946194893647!GO:0030032;lamellipodium biogenesis;0.0299713603438606!GO:0007160;cell-matrix adhesion;0.0303320144928285!GO:0007067;mitosis;0.0303320144928285!GO:0031589;cell-substrate adhesion;0.0308980947481362!GO:0004177;aminopeptidase activity;0.0310528729801097!GO:0030833;regulation of actin filament polymerization;0.0310885997189734!GO:0042802;identical protein binding;0.0311746019712026!GO:0006607;NLS-bearing substrate import into nucleus;0.0318879710988322!GO:0007021;tubulin folding;0.0318879710988322!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0332103813455552!GO:0000339;RNA cap binding;0.0332232020644766!GO:0009116;nucleoside metabolic process;0.0334506713233155!GO:0008538;proteasome activator activity;0.0334756383010791!GO:0000902;cell morphogenesis;0.0334756383010791!GO:0032989;cellular structure morphogenesis;0.0334756383010791!GO:0009225;nucleotide-sugar metabolic process;0.0337785757266544!GO:0022408;negative regulation of cell-cell adhesion;0.0337785757266544!GO:0000030;mannosyltransferase activity;0.0341113403865172!GO:0003779;actin binding;0.0344439518025353!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0345657871727658!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0354862009073443!GO:0031272;regulation of pseudopodium formation;0.0358092353314925!GO:0031269;pseudopodium formation;0.0358092353314925!GO:0031344;regulation of cell projection organization and biogenesis;0.0358092353314925!GO:0031268;pseudopodium organization and biogenesis;0.0358092353314925!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0358092353314925!GO:0031274;positive regulation of pseudopodium formation;0.0358092353314925!GO:0006611;protein export from nucleus;0.0358179638760987!GO:0001527;microfibril;0.0358179638760987!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0361233860035871!GO:0006779;porphyrin biosynthetic process;0.037362602751327!GO:0033014;tetrapyrrole biosynthetic process;0.037362602751327!GO:0006635;fatty acid beta-oxidation;0.0381608840401383!GO:0009967;positive regulation of signal transduction;0.0384729311930432!GO:0045936;negative regulation of phosphate metabolic process;0.0384999472892546!GO:0009303;rRNA transcription;0.0385438719462101!GO:0005588;collagen type V;0.0392654756541701!GO:0006783;heme biosynthetic process;0.0432455236424135!GO:0016251;general RNA polymerase II transcription factor activity;0.0432939483137486!GO:0006807;nitrogen compound metabolic process;0.0439582368581164!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0443765211093493!GO:0051235;maintenance of localization;0.0452406869769978!GO:0005637;nuclear inner membrane;0.0452406869769978!GO:0005669;transcription factor TFIID complex;0.0455766427110013!GO:0016272;prefoldin complex;0.0460431410390345!GO:0051301;cell division;0.0460431410390345!GO:0030128;clathrin coat of endocytic vesicle;0.0460431410390345!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0460431410390345!GO:0030122;AP-2 adaptor complex;0.0460431410390345!GO:0030100;regulation of endocytosis;0.0461836545368941!GO:0045334;clathrin-coated endocytic vesicle;0.0469439945650147!GO:0019838;growth factor binding;0.0475648194018777!GO:0032906;transforming growth factor-beta2 production;0.0476678439826856!GO:0032909;regulation of transforming growth factor-beta2 production;0.0476678439826856!GO:0022415;viral reproductive process;0.048505271161295!GO:0030836;positive regulation of actin filament depolymerization;0.048876053395544!GO:0006376;mRNA splice site selection;0.049106865233449!GO:0000389;nuclear mRNA 3'-splice site recognition;0.049106865233449!GO:0004448;isocitrate dehydrogenase activity;0.049106865233449!GO:0046519;sphingoid metabolic process;0.0494098105910073!GO:0003678;DNA helicase activity;0.0496021473785722!GO:0032507;maintenance of cellular protein localization;0.0496021473785722!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0497486272469439
|sample_id=11338
|sample_id=11338
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=cartilage
|sample_tissue=cartilage
|top_motifs=FOXL1:2.03088606889;SMAD1..7,9:1.84184275641;HES1:1.7940522184;MAFB:1.74727903724;ZNF238:1.48845986548;TAL1_TCF{3,4,12}:1.36056025201;ESR1:1.34086618887;NFE2L1:1.34076444123;GTF2A1,2:1.30831642789;ATF6:1.16575828658;TFCP2:1.15363799687;NR6A1:1.08369094362;TFAP4:1.04714737532;HIF1A:1.01660779487;MYBL2:0.975871726533;TEAD1:0.974532885788;HMGA1,2:0.929473382183;HAND1,2:0.884180263496;GTF2I:0.877910978466;ALX4:0.875289261318;RXRA_VDR{dimer}:0.849521918841;PPARG:0.847296954917;ZNF423:0.832602686806;EBF1:0.807404313478;GZF1:0.80327716558;VSX1,2:0.79757827851;IKZF1:0.767753930618;UFEwm:0.745412826844;GLI1..3:0.723016239464;ZBTB6:0.710673621204;MTE{core}:0.694604284192;RXR{A,B,G}:0.681014809976;HOX{A5,B5}:0.677375235801;STAT2,4,6:0.671126610775;TLX1..3_NFIC{dimer}:0.669744546198;ZNF148:0.654820292454;TP53:0.653678327994;NANOG{mouse}:0.652465339075;MAZ:0.651023141558;EVI1:0.645568761479;SRF:0.639398642438;XBP1:0.62222573315;GCM1,2:0.612694057164;NKX3-1:0.584825866249;NFATC1..3:0.583821234637;GFI1B:0.582641155191;TBP:0.554267594864;AHR_ARNT_ARNT2:0.546299877063;SPZ1:0.513773784597;TFAP2B:0.495419212122;NHLH1,2:0.478908393846;KLF4:0.465758463141;ADNP_IRX_SIX_ZHX:0.461566441017;PRDM1:0.440583287507;MTF1:0.43509652379;LHX3,4:0.416944388052;TFAP2{A,C}:0.414833620833;NFE2L2:0.412533454684;XCPE1{core}:0.40557823835;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.394638852006;TEF:0.39122971115;NR3C1:0.370763146887;HLF:0.365972991224;PAX1,9:0.361790207977;YY1:0.360536525784;HOX{A4,D4}:0.353117420999;POU1F1:0.35069064965;ZIC1..3:0.345899260252;NKX2-2,8:0.343134718711;PRRX1,2:0.316047206422;HSF1,2:0.250058993312;TBX4,5:0.244218840105;ESRRA:0.231364767148;MEF2{A,B,C,D}:0.216942132478;STAT5{A,B}:0.196139162082;POU5F1:0.191012267747;LEF1_TCF7_TCF7L1,2:0.190951587815;HOX{A6,A7,B6,B7}:0.179296068131;RREB1:0.176335331086;PATZ1:0.171858117264;HIC1:0.161987727042;FOX{D1,D2}:0.160988400541;NR1H4:0.142709851686;HNF1A:0.141419904157;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.140266036895;MZF1:0.138926531161;REST:0.126387294778;PAX6:0.126014933689;PAX5:0.123469713184;RFX1:0.115988298585;RBPJ:0.115340978521;NKX3-2:0.0838810482595;MED-1{core}:0.0765324788621;ATF2:0.0679768796138;EP300:0.0313627170789;NR5A1,2:0.0305955616129;MYFfamily:0.0234551217984;CEBPA,B_DDIT3:0.0196640277424;FOXA2:0.0168312274454;DBP:0.0101330658834;FOSL2:0.00906839085684;BPTF:-0.00548315928641;NFIL3:-0.0135231705972;NFE2:-0.0259454220053;SP1:-0.0305082891199;SOX5:-0.0678249820396;FOS_FOS{B,L1}_JUN{B,D}:-0.0751407210133;ONECUT1,2:-0.104527755171;MYB:-0.10817282278;FOX{F1,F2,J1}:-0.11642663676;HOXA9_MEIS1:-0.121442166232;NKX2-1,4:-0.129665717837;BACH2:-0.144662231645;IRF1,2:-0.173511237621;RUNX1..3:-0.199167190172;CRX:-0.202034144251;LMO2:-0.204306085785;ELK1,4_GABP{A,B1}:-0.215188449704;SREBF1,2:-0.220847284057;SOX2:-0.225771896335;PDX1:-0.23505778896;AR:-0.239094273876;SOX17:-0.242633477596;HMX1:-0.251936100561;NFIX:-0.264701514936;EN1,2:-0.266052467649;EGR1..3:-0.274575404123;RFX2..5_RFXANK_RFXAP:-0.277751228038;HBP1_HMGB_SSRP1_UBTF:-0.279890690146;ZNF143:-0.285538310761;POU6F1:-0.303869299073;FOXP3:-0.318807250725;TGIF1:-0.325605151539;ZNF384:-0.333096219962;FOX{I1,J2}:-0.351296828986;ARID5B:-0.375864272654;NFKB1_REL_RELA:-0.378695288987;NKX2-3_NKX2-5:-0.388216803944;bHLH_family:-0.391468959871;CREB1:-0.391607736203;FOXO1,3,4:-0.397740063886;TFDP1:-0.40517458012;DMAP1_NCOR{1,2}_SMARC:-0.425338585282;STAT1,3:-0.43915483851;JUN:-0.456987344653;AIRE:-0.464576556675;CDC5L:-0.501588512964;PAX8:-0.506134103911;ETS1,2:-0.512556802473;TOPORS:-0.512874916438;CDX1,2,4:-0.544517390843;ATF4:-0.549938208743;PBX1:-0.575618021976;NRF1:-0.577590656901;PAX4:-0.591941121068;HNF4A_NR2F1,2:-0.598752847743;GATA4:-0.603817055431;ELF1,2,4:-0.620477057257;GATA6:-0.622533018517;FOXN1:-0.643134958385;ATF5_CREB3:-0.663933083998;PAX3,7:-0.675203420636;GFI1:-0.682580524715;SPI1:-0.682901257089;FOXD3:-0.697402944835;SNAI1..3:-0.70059606785;ZFP161:-0.702055746834;IRF7:-0.706399762829;FOXQ1:-0.718877789494;T:-0.732380769213;PAX2:-0.733482191345;SPIB:-0.750541074939;E2F1..5:-0.757484900303;ZEB1:-0.868505764983;OCT4_SOX2{dimer}:-0.897803212442;NANOG:-0.939116430606;CUX2:-0.9425165042;NKX6-1,2:-0.943583475831;FOXM1:-0.947292219198;TLX2:-0.949036048873;BREu{core}:-0.972769014722;RORA:-1.06727091449;NFY{A,B,C}:-1.08499543367;FOXP1:-1.12239163711;POU3F1..4:-1.16710386661;SOX{8,9,10}:-1.18337438597;POU2F1..3:-1.24545846909;ZBTB16:-1.25837968951;PITX1..3:-1.27994488609;ALX1:-1.3297622995;IKZF2:-1.34645578655;MYOD1:-1.40873545258
|top_motifs=FOXL1:2.03088606889;SMAD1..7,9:1.84184275641;HES1:1.7940522184;MAFB:1.74727903724;ZNF238:1.48845986548;TAL1_TCF{3,4,12}:1.36056025201;ESR1:1.34086618887;NFE2L1:1.34076444123;GTF2A1,2:1.30831642789;ATF6:1.16575828658;TFCP2:1.15363799687;NR6A1:1.08369094362;TFAP4:1.04714737532;HIF1A:1.01660779487;MYBL2:0.975871726533;TEAD1:0.974532885788;HMGA1,2:0.929473382183;HAND1,2:0.884180263496;GTF2I:0.877910978466;ALX4:0.875289261318;RXRA_VDR{dimer}:0.849521918841;PPARG:0.847296954917;ZNF423:0.832602686806;EBF1:0.807404313478;GZF1:0.80327716558;VSX1,2:0.79757827851;IKZF1:0.767753930618;UFEwm:0.745412826844;GLI1..3:0.723016239464;ZBTB6:0.710673621204;MTE{core}:0.694604284192;RXR{A,B,G}:0.681014809976;HOX{A5,B5}:0.677375235801;STAT2,4,6:0.671126610775;TLX1..3_NFIC{dimer}:0.669744546198;ZNF148:0.654820292454;TP53:0.653678327994;NANOG{mouse}:0.652465339075;MAZ:0.651023141558;EVI1:0.645568761479;SRF:0.639398642438;XBP1:0.62222573315;GCM1,2:0.612694057164;NKX3-1:0.584825866249;NFATC1..3:0.583821234637;GFI1B:0.582641155191;TBP:0.554267594864;AHR_ARNT_ARNT2:0.546299877063;SPZ1:0.513773784597;TFAP2B:0.495419212122;NHLH1,2:0.478908393846;KLF4:0.465758463141;ADNP_IRX_SIX_ZHX:0.461566441017;PRDM1:0.440583287507;MTF1:0.43509652379;LHX3,4:0.416944388052;TFAP2{A,C}:0.414833620833;NFE2L2:0.412533454684;XCPE1{core}:0.40557823835;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.394638852006;TEF:0.39122971115;NR3C1:0.370763146887;HLF:0.365972991224;PAX1,9:0.361790207977;YY1:0.360536525784;HOX{A4,D4}:0.353117420999;POU1F1:0.35069064965;ZIC1..3:0.345899260252;NKX2-2,8:0.343134718711;PRRX1,2:0.316047206422;HSF1,2:0.250058993312;TBX4,5:0.244218840105;ESRRA:0.231364767148;MEF2{A,B,C,D}:0.216942132478;STAT5{A,B}:0.196139162082;POU5F1:0.191012267747;LEF1_TCF7_TCF7L1,2:0.190951587815;HOX{A6,A7,B6,B7}:0.179296068131;RREB1:0.176335331086;PATZ1:0.171858117264;HIC1:0.161987727042;FOX{D1,D2}:0.160988400541;NR1H4:0.142709851686;HNF1A:0.141419904157;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.140266036895;MZF1:0.138926531161;REST:0.126387294778;PAX6:0.126014933689;PAX5:0.123469713184;RFX1:0.115988298585;RBPJ:0.115340978521;NKX3-2:0.0838810482595;MED-1{core}:0.0765324788621;ATF2:0.0679768796138;EP300:0.0313627170789;NR5A1,2:0.0305955616129;MYFfamily:0.0234551217984;CEBPA,B_DDIT3:0.0196640277424;FOXA2:0.0168312274454;DBP:0.0101330658834;FOSL2:0.00906839085684;BPTF:-0.00548315928641;NFIL3:-0.0135231705972;NFE2:-0.0259454220053;SP1:-0.0305082891199;SOX5:-0.0678249820396;FOS_FOS{B,L1}_JUN{B,D}:-0.0751407210133;ONECUT1,2:-0.104527755171;MYB:-0.10817282278;FOX{F1,F2,J1}:-0.11642663676;HOXA9_MEIS1:-0.121442166232;NKX2-1,4:-0.129665717837;BACH2:-0.144662231645;IRF1,2:-0.173511237621;RUNX1..3:-0.199167190172;CRX:-0.202034144251;LMO2:-0.204306085785;ELK1,4_GABP{A,B1}:-0.215188449704;SREBF1,2:-0.220847284057;SOX2:-0.225771896335;PDX1:-0.23505778896;AR:-0.239094273876;SOX17:-0.242633477596;HMX1:-0.251936100561;NFIX:-0.264701514936;EN1,2:-0.266052467649;EGR1..3:-0.274575404123;RFX2..5_RFXANK_RFXAP:-0.277751228038;HBP1_HMGB_SSRP1_UBTF:-0.279890690146;ZNF143:-0.285538310761;POU6F1:-0.303869299073;FOXP3:-0.318807250725;TGIF1:-0.325605151539;ZNF384:-0.333096219962;FOX{I1,J2}:-0.351296828986;ARID5B:-0.375864272654;NFKB1_REL_RELA:-0.378695288987;NKX2-3_NKX2-5:-0.388216803944;bHLH_family:-0.391468959871;CREB1:-0.391607736203;FOXO1,3,4:-0.397740063886;TFDP1:-0.40517458012;DMAP1_NCOR{1,2}_SMARC:-0.425338585282;STAT1,3:-0.43915483851;JUN:-0.456987344653;AIRE:-0.464576556675;CDC5L:-0.501588512964;PAX8:-0.506134103911;ETS1,2:-0.512556802473;TOPORS:-0.512874916438;CDX1,2,4:-0.544517390843;ATF4:-0.549938208743;PBX1:-0.575618021976;NRF1:-0.577590656901;PAX4:-0.591941121068;HNF4A_NR2F1,2:-0.598752847743;GATA4:-0.603817055431;ELF1,2,4:-0.620477057257;GATA6:-0.622533018517;FOXN1:-0.643134958385;ATF5_CREB3:-0.663933083998;PAX3,7:-0.675203420636;GFI1:-0.682580524715;SPI1:-0.682901257089;FOXD3:-0.697402944835;SNAI1..3:-0.70059606785;ZFP161:-0.702055746834;IRF7:-0.706399762829;FOXQ1:-0.718877789494;T:-0.732380769213;PAX2:-0.733482191345;SPIB:-0.750541074939;E2F1..5:-0.757484900303;ZEB1:-0.868505764983;OCT4_SOX2{dimer}:-0.897803212442;NANOG:-0.939116430606;CUX2:-0.9425165042;NKX6-1,2:-0.943583475831;FOXM1:-0.947292219198;TLX2:-0.949036048873;BREu{core}:-0.972769014722;RORA:-1.06727091449;NFY{A,B,C}:-1.08499543367;FOXP1:-1.12239163711;POU3F1..4:-1.16710386661;SOX{8,9,10}:-1.18337438597;POU2F1..3:-1.24545846909;ZBTB16:-1.25837968951;PITX1..3:-1.27994488609;ALX1:-1.3297622995;IKZF2:-1.34645578655;MYOD1:-1.40873545258
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11338-117F6;search_select_hide=table117:FF:11338-117F6
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Chondrocyte - de diff, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11372
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecartilage
dev stage60 years old adult
sexmale
age60
cell typechondroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1662
catalog numberCA402-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005924
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11372 CAGE DRX008202 DRR009074
Accession ID Hg19

Library idBAMCTSS
CNhs11372 DRZ000499 DRZ001884
Accession ID Hg38

Library idBAMCTSS
CNhs11372 DRZ011849 DRZ013234
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005924
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.CTTGTA sRNA-Seq DRX037172 DRR041538
Accession ID Hg19

Library idBAMCTSS
SRhi10011.CTTGTA DRZ007180


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.166
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.284
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.478
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.171
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.129
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.545
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.274
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.245
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte1.115
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.302
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.318
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.302
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.176
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.399
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.346
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.677
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.153
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.176
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.654
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.438
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.861
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.382
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.7
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.399
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11372

Jaspar motifP-value
MA0002.20.957
MA0003.10.165
MA0004.10.487
MA0006.10.198
MA0007.10.932
MA0009.10.127
MA0014.10.346
MA0017.10.887
MA0018.26.39224e-4
MA0019.10.647
MA0024.14.19831e-5
MA0025.10.331
MA0027.10.537
MA0028.10.0604
MA0029.10.535
MA0030.10.664
MA0031.10.602
MA0035.20.158
MA0038.10.0406
MA0039.20.257
MA0040.10.359
MA0041.10.236
MA0042.10.414
MA0043.10.00189
MA0046.10.316
MA0047.20.308
MA0048.10.291
MA0050.10.0205
MA0051.10.683
MA0052.10.946
MA0055.10.921
MA0057.10.426
MA0058.10.432
MA0059.10.7
MA0060.19.66956e-8
MA0061.10.5
MA0062.22.69705e-6
MA0065.20.921
MA0066.10.481
MA0067.10.0327
MA0068.10.713
MA0069.10.141
MA0070.10.945
MA0071.10.306
MA0072.10.6
MA0073.10.799
MA0074.10.697
MA0076.10.019
MA0077.10.184
MA0078.10.563
MA0079.20.936
MA0080.28.49596e-9
MA0081.10.00154
MA0083.10.00143
MA0084.10.792
MA0087.10.776
MA0088.10.846
MA0090.11.96332e-5
MA0091.10.0552
MA0092.10.113
MA0093.10.459
MA0099.20.746
MA0100.10.417
MA0101.10.0419
MA0102.20.4
MA0103.10.00767
MA0104.20.114
MA0105.10.604
MA0106.10.0338
MA0107.10.0725
MA0108.20.00241
MA0111.10.133
MA0112.26.00625e-4
MA0113.10.334
MA0114.10.685
MA0115.10.365
MA0116.10.576
MA0117.10.539
MA0119.10.382
MA0122.10.714
MA0124.10.688
MA0125.10.466
MA0131.10.206
MA0135.10.698
MA0136.13.73614e-8
MA0137.20.877
MA0138.20.27
MA0139.10.787
MA0140.10.322
MA0141.10.211
MA0142.10.144
MA0143.10.843
MA0144.10.855
MA0145.10.102
MA0146.10.232
MA0147.10.175
MA0148.10.253
MA0149.10.666
MA0150.10.2
MA0152.10.056
MA0153.10.117
MA0154.10.177
MA0155.10.0674
MA0156.19.97812e-7
MA0157.10.301
MA0159.10.469
MA0160.10.998
MA0162.10.0585
MA0163.10.135
MA0164.10.729
MA0258.10.218
MA0259.10.355



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11372

Novel motifP-value
10.738
100.833
1000.781
1010.118
1020.0624
1030.114
1040.556
1050.688
1060.201
1070.0209
1080.22
1090.605
110.542
1100.73
1110.281
1120.626
1130.251
1140.233
1150.201
1160.0323
1170.283
1180.798
1190.602
120.377
1200.638
1210.605
1220.876
1230.0014
1240.53
1250.895
1260.466
1270.665
1280.335
1290.908
130.838
1300.618
1310.669
1320.156
1330.487
1340.0712
1350.112
1360.419
1370.535
1380.421
1390.35
140.599
1400.116
1410.507
1420.714
1430.644
1440.369
1450.649
1460.587
1470.459
1480.0938
1490.00411
150.722
1500.636
1510.588
1520.0216
1530.424
1540.907
1550.177
1560.83
1570.172
1580.00909
1590.343
160.0532
1600.45
1610.938
1620.69
1630.62
1640.275
1650.866
1666.64788e-4
1670.24
1680.8
1690.0159
170.583
180.0821
190.0078
20.426
200.165
210.427
220.064
230.0914
240.116
250.536
260.776
270.62
280.209
290.557
30.966
300.0914
310.518
323.88982e-14
330.823
340.377
350.863
360.0993
370.324
380.932
390.232
40.636
400.777
410.548
420.675
430.219
440.749
450.411
460.344
470.641
480.91
490.617
50.356
500.374
510.641
520.413
530.28
540.405
550.797
560.786
570.724
580.479
590.0339
60.404
600.535
610.54
620.729
630.239
640.782
650.148
660.24
670.674
680.373
690.0976
70.955
700.0389
710.48
720.593
730.0192
740.611
750.767
760.929
770.0128
780.152
790.0176
80.205
800.969
810.465
820.181
830.617
840.301
850.0195
860.491
870.22
880.187
890.0219
90.344
900.178
910.917
920.365
930.71
940.613
950.655
960.943
970.417
980.488
990.0214



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11372


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000246 (human chondrocyte de-differentiated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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