FF:11360-117I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005421 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005421 | ||
|accession_numbers=CAGE;DRX008469;DRR009341;DRZ000766;DRZ002151;DRZ012116;DRZ013501 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037108;DRR041474;DRZ007116 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000168 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.81!63.34!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.51!53.23!DRAP1;;chr21:38071430..38071456,+!p1@SIM2!1.50!30.34!SIM2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!136.27!CREB3L1;;chr20:30433396..30433414,-!p1@FOXS1!1.36!21.82!FOXS1;;chr11:46299539..46299620,+!p2@CREB3L1!1.34!35.13!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.32!81.44!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!1.31!87.30!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.38!FOXC2;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.10!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.84!OSR1;;chr6:34204921..34204939,+!p3@HMGA1!1.23!474.82!HMGA1;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.18!GATA6;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.84!MAFK;;chr4:174450089..174450153,-!p2@HAND2!1.16!13.31!HAND2;;chr16:86600870..86600921,+!p2@FOXC2!1.14!12.78!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!1.12!12.24!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.07!10.65!GATA4;;chr15:67418177..67418204,+!p9@SMAD3!1.05!10.11!SMAD3;;chr16:86544113..86544145,+!p1@FOXF1!1.02!11.71!FOXF1;;chr9:35732647..35732678,+!p2@CREB3!1.00!51.10!CREB3;;chr15:67418047..67418093,+!p4@SMAD3!0.99!11.18!SMAD3;;chr11:34642612..34642646,+!p1@EHF!0.98!8.52!EHF;;chr12:124873357..124873401,-!p1@NCOR2!0.95!95.28!NCOR2;;chr5:72744594..72744609,-!p1@FOXD1!0.95!37.26!FOXD1;;chr2:239756739..239756755,+!p2@TWIST2!0.95!13.84!TWIST2;;chr18:19749386..19749404,+!p2@GATA6!0.92!10.65!GATA6;;chr1:170633348..170633399,+!p2@PRRX1!0.92!10.11!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.21!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!0.90!9.58!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.90!9.05!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!0.90!6.92!HAND2;;chr11:65687158..65687216,+!p4@DRAP1!0.89!40.99!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.88!11.18!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.87!482.27!TAX1BP3;;chr2:239756671..239756732,+!p1@TWIST2!0.87!21.82!TWIST2;;chr7:150945865..150945896,-!p4@SMARCD3!0.87!6.39!SMARCD3;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.39!NPAS1;;chr11:65667846..65667868,-!p1@FOSL1!0.86!174.60!FOSL1;;chr11:65686776..65686787,+!p9@DRAP1!0.86!7.45!DRAP1;;chr5:72743793..72743855,-!p4@FOXD1!0.86!7.45!FOXD1;;chr15:67430351..67430366,+!p10@SMAD3!0.84!5.86!SMAD3;;chr15:67418119..67418162,+!p5@SMAD3!0.83!6.39!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.82!56.42!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!0.81!6.39!PRRX1;;chr20:6748325..6748352,+!p1@BMP2!0.80!7.98!BMP2;;chr12:66218904..66218913,+!p11@HMGA2!0.80!5.32!HMGA2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!68.14!ZC3H12A;;chr19:42636586..42636607,-!p1@POU2F2!0.78!14.90!POU2F2;;chr12:125002827..125002855,-!p5@NCOR2!0.78!7.45!NCOR2;;chr22:38598086..38598105,+!p1@MAFF!0.76!55.36!MAFF;;chr9:35732514..35732530,+!p5@CREB3!0.76!6.92!CREB3;;chr11:46299186..46299195,+!p3@CREB3L1!0.76!5.32!CREB3L1;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.32!HOXB2;;chr1:170632285..170632309,+!p1@PRRX1!0.75!5.32!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.62!MLLT11;;chr11:65686952..65686975,+!p5@DRAP1!0.74!27.68!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!0.74!19.16!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.72!6.39!NR2F2;;chr11:32457075..32457095,-!p1@WT1!0.72!4.26!WT1;;chr8:72755987..72756002,-!p7@MSC!0.72!4.26!MSC;;chr2:85981107..85981120,+!p3@ATOH8!0.72!4.26!ATOH8;;chr6:34204973..34204990,+!p4@HMGA1!0.71!61.75!HMGA1;;chr9:35732592..35732640,+!p1@CREB3!0.71!61.22!CREB3;;chr8:106330656..106330684,+!p1@ZFPM2!0.71!11.71!ZFPM2;;chr12:53614115..53614154,-!p1@RARG!0.69!23.42!RARG;;chr6:34205372..34205412,+!p5@HMGA1!0.69!22.36!HMGA1;;chr15:96869292..96869320,+!p15@NR2F2!0.69!5.86!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.68!13.31!AHRR;;chr12:66218255..66218304,+!p3@HMGA2!0.68!11.18!HMGA2;;chr3:52001448..52001478,-!p2@PCBP4!0.67!59.62!PCBP4;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.16!HMGA2;;chr8:72756637..72756664,-!p3@MSC!0.67!4.26!MSC;;chr7:35293685..35293718,-!p1@TBX20!0.67!3.73!TBX20;;chr10:131762504..131762555,-!p1@EBF3!0.67!3.73!EBF3;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.73!CREB3L1;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.73!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.67!3.73!FOXC2;;chr1:170633100..170633112,+!p19@PRRX1!0.67!3.73!PRRX1;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.18!PCBP4;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.26!HOXB2;;chr12:7079780..7079791,-!p2@PHB2!0.65!20.76!PHB2;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.71!TBX2;;chr8:72756267..72756296,-!p4@MSC!0.64!5.32!MSC;;chr1:170632959..170632987,+!p4@PRRX1!0.64!3.73!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.63!10.11!HOXB2;;chr2:71127699..71127744,+!p1@VAX2!0.63!7.45!VAX2;;chr12:124873852..124873881,-!p3@NCOR2!0.62!22.36!NCOR2;;chr15:96869255..96869291,+!p6@NR2F2!0.62!6.39!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.62!5.32!ZFP64;;chr2:231084820..231084836,-!p5@SP110!0.62!3.73!SP110;;chr6:126070769..126070801,+!p1@HEY2!0.62!3.73!HEY2;;chr2:85981027..85981047,+!p8@ATOH8!0.62!3.19!ATOH8;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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.81!63.34!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.51!53.23!DRAP1;;chr21:38071430..38071456,+!p1@SIM2!1.50!30.34!SIM2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!136.27!CREB3L1;;chr20:30433396..30433414,-!p1@FOXS1!1.36!21.82!FOXS1;;chr11:46299539..46299620,+!p2@CREB3L1!1.34!35.13!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.32!81.44!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!1.31!87.30!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.38!FOXC2;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.10!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.84!OSR1;;chr6:34204921..34204939,+!p3@HMGA1!1.23!474.82!HMGA1;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.18!GATA6;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.84!MAFK;;chr4:174450089..174450153,-!p2@HAND2!1.16!13.31!HAND2;;chr16:86600870..86600921,+!p2@FOXC2!1.14!12.78!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!1.12!12.24!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.07!10.65!GATA4;;chr15:67418177..67418204,+!p9@SMAD3!1.05!10.11!SMAD3;;chr16:86544113..86544145,+!p1@FOXF1!1.02!11.71!FOXF1;;chr9:35732647..35732678,+!p2@CREB3!1.00!51.10!CREB3;;chr15:67418047..67418093,+!p4@SMAD3!0.99!11.18!SMAD3;;chr11:34642612..34642646,+!p1@EHF!0.98!8.52!EHF;;chr12:124873357..124873401,-!p1@NCOR2!0.95!95.28!NCOR2;;chr5:72744594..72744609,-!p1@FOXD1!0.95!37.26!FOXD1;;chr2:239756739..239756755,+!p2@TWIST2!0.95!13.84!TWIST2;;chr18:19749386..19749404,+!p2@GATA6!0.92!10.65!GATA6;;chr1:170633348..170633399,+!p2@PRRX1!0.92!10.11!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.21!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!0.90!9.58!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.90!9.05!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!0.90!6.92!HAND2;;chr11:65687158..65687216,+!p4@DRAP1!0.89!40.99!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.88!11.18!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.87!482.27!TAX1BP3;;chr2:239756671..239756732,+!p1@TWIST2!0.87!21.82!TWIST2;;chr7:150945865..150945896,-!p4@SMARCD3!0.87!6.39!SMARCD3;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.39!NPAS1;;chr11:65667846..65667868,-!p1@FOSL1!0.86!174.60!FOSL1;;chr11:65686776..65686787,+!p9@DRAP1!0.86!7.45!DRAP1;;chr5:72743793..72743855,-!p4@FOXD1!0.86!7.45!FOXD1;;chr15:67430351..67430366,+!p10@SMAD3!0.84!5.86!SMAD3;;chr15:67418119..67418162,+!p5@SMAD3!0.83!6.39!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.82!56.42!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!0.81!6.39!PRRX1;;chr20:6748325..6748352,+!p1@BMP2!0.80!7.98!BMP2;;chr12:66218904..66218913,+!p11@HMGA2!0.80!5.32!HMGA2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!68.14!ZC3H12A;;chr19:42636586..42636607,-!p1@POU2F2!0.78!14.90!POU2F2;;chr12:125002827..125002855,-!p5@NCOR2!0.78!7.45!NCOR2;;chr22:38598086..38598105,+!p1@MAFF!0.76!55.36!MAFF;;chr9:35732514..35732530,+!p5@CREB3!0.76!6.92!CREB3;;chr11:46299186..46299195,+!p3@CREB3L1!0.76!5.32!CREB3L1;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.32!HOXB2;;chr1:170632285..170632309,+!p1@PRRX1!0.75!5.32!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.62!MLLT11;;chr11:65686952..65686975,+!p5@DRAP1!0.74!27.68!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!0.74!19.16!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.72!6.39!NR2F2;;chr11:32457075..32457095,-!p1@WT1!0.72!4.26!WT1;;chr8:72755987..72756002,-!p7@MSC!0.72!4.26!MSC;;chr2:85981107..85981120,+!p3@ATOH8!0.72!4.26!ATOH8;;chr6:34204973..34204990,+!p4@HMGA1!0.71!61.75!HMGA1;;chr9:35732592..35732640,+!p1@CREB3!0.71!61.22!CREB3;;chr8:106330656..106330684,+!p1@ZFPM2!0.71!11.71!ZFPM2;;chr12:53614115..53614154,-!p1@RARG!0.69!23.42!RARG;;chr6:34205372..34205412,+!p5@HMGA1!0.69!22.36!HMGA1;;chr15:96869292..96869320,+!p15@NR2F2!0.69!5.86!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.68!13.31!AHRR;;chr12:66218255..66218304,+!p3@HMGA2!0.68!11.18!HMGA2;;chr3:52001448..52001478,-!p2@PCBP4!0.67!59.62!PCBP4;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.16!HMGA2;;chr8:72756637..72756664,-!p3@MSC!0.67!4.26!MSC;;chr7:35293685..35293718,-!p1@TBX20!0.67!3.73!TBX20;;chr10:131762504..131762555,-!p1@EBF3!0.67!3.73!EBF3;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.73!CREB3L1;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.73!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.67!3.73!FOXC2;;chr1:170633100..170633112,+!p19@PRRX1!0.67!3.73!PRRX1;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.18!PCBP4;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.26!HOXB2;;chr12:7079780..7079791,-!p2@PHB2!0.65!20.76!PHB2;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.71!TBX2;;chr8:72756267..72756296,-!p4@MSC!0.64!5.32!MSC;;chr1:170632959..170632987,+!p4@PRRX1!0.64!3.73!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.63!10.11!HOXB2;;chr2:71127699..71127744,+!p1@VAX2!0.63!7.45!VAX2;;chr12:124873852..124873881,-!p3@NCOR2!0.62!22.36!NCOR2;;chr15:96869255..96869291,+!p6@NR2F2!0.62!6.39!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.62!5.32!ZFP64;;chr2:231084820..231084836,-!p5@SP110!0.62!3.73!SP110;;chr6:126070769..126070801,+!p1@HEY2!0.62!3.73!HEY2;;chr2:85981027..85981047,+!p8@ATOH8!0.62!3.19!ATOH8;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11305.11360-117I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11305.11360-117I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11305.11360-117I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11305.11360-117I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11305.11360-117I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11360-117I1 | |id=FF:11360-117I1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000168 | ||
|is_obsolete= | |||
|library_id=CNhs11305 | |||
|library_id_phase_based=2:CNhs11305 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11360 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GAGTGG.11360 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11360 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GAGTGG.11360 | |||
|name=Smooth Muscle Cells - Aortic, donor2 | |name=Smooth Muscle Cells - Aortic, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11305,LSID905,release010,COMPLETED | |profile_hcage=CNhs11305,LSID905,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA354-R10a | |rna_catalog_number=CA354-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117I1 | |rna_tube_id=117I1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.GAGTGG | |||
|sample_age=40 | |sample_age=40 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.77035810176373e-214!GO:0005737;cytoplasm;5.66315228820622e-200!GO:0044444;cytoplasmic part;1.66083947634741e-151!GO:0043226;organelle;1.57908780914955e-149!GO:0043229;intracellular organelle;2.63772708346701e-149!GO:0043231;intracellular membrane-bound organelle;7.41345178105668e-146!GO:0043227;membrane-bound organelle;1.66252768765421e-145!GO:0044422;organelle part;1.23950539239396e-127!GO:0044446;intracellular organelle part;2.7222492060969e-126!GO:0032991;macromolecular complex;9.72195186501167e-87!GO:0005515;protein binding;1.36699710757619e-79!GO:0030529;ribonucleoprotein complex;9.07529927024156e-79!GO:0005739;mitochondrion;3.76062672992782e-70!GO:0043233;organelle lumen;2.86833216511617e-64!GO:0031974;membrane-enclosed lumen;2.86833216511617e-64!GO:0044238;primary metabolic process;3.99166095704175e-64!GO:0044237;cellular metabolic process;6.16147735445391e-64!GO:0003723;RNA binding;9.62658425129568e-57!GO:0031090;organelle membrane;2.9710472415213e-55!GO:0043170;macromolecule metabolic process;7.2696688881901e-55!GO:0044428;nuclear part;1.55063913274768e-53!GO:0005840;ribosome;1.91292112548001e-51!GO:0006412;translation;2.45455752584983e-51!GO:0019538;protein metabolic process;7.71681006121832e-49!GO:0044429;mitochondrial part;3.37461783670871e-48!GO:0009058;biosynthetic process;7.76498432871816e-48!GO:0003735;structural constituent of ribosome;1.14256132076977e-45!GO:0044249;cellular biosynthetic process;2.33446982241894e-44!GO:0016043;cellular component organization and biogenesis;2.61144814831524e-43!GO:0044260;cellular macromolecule metabolic process;2.64332243495798e-43!GO:0043234;protein complex;3.3562811273746e-43!GO:0005829;cytosol;7.32694561355517e-43!GO:0015031;protein transport;1.26489292761556e-42!GO:0044267;cellular protein metabolic process;1.74107560531647e-42!GO:0009059;macromolecule biosynthetic process;6.36514665507299e-42!GO:0033036;macromolecule localization;7.49841041897781e-41!GO:0033279;ribosomal subunit;1.4933899914035e-39!GO:0045184;establishment of protein localization;2.79466146832177e-39!GO:0031967;organelle envelope;4.10131593200061e-39!GO:0031975;envelope;9.41857228102154e-39!GO:0008104;protein localization;3.99071103322648e-38!GO:0006396;RNA processing;3.44674263580878e-37!GO:0005634;nucleus;7.756286301857e-37!GO:0031981;nuclear lumen;5.67088094115616e-35!GO:0005740;mitochondrial envelope;5.98101232148266e-33!GO:0046907;intracellular transport;4.49333218770861e-32!GO:0031966;mitochondrial membrane;4.50242447317317e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.60852044968175e-30!GO:0006886;intracellular protein transport;3.00199632443105e-29!GO:0019866;organelle inner membrane;9.01000140212752e-29!GO:0005743;mitochondrial inner membrane;3.73624752168932e-28!GO:0016071;mRNA metabolic process;7.64168521038376e-28!GO:0006996;organelle organization and biogenesis;1.6806578559595e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.27612574605315e-26!GO:0065003;macromolecular complex assembly;5.50307452498453e-26!GO:0008380;RNA splicing;1.40141606826449e-25!GO:0043228;non-membrane-bound organelle;1.79091695914277e-25!GO:0043232;intracellular non-membrane-bound organelle;1.79091695914277e-25!GO:0044445;cytosolic part;1.11533152138474e-24!GO:0006397;mRNA processing;1.14194731876737e-23!GO:0006119;oxidative phosphorylation;1.39754820661485e-23!GO:0005783;endoplasmic reticulum;1.77262919282019e-23!GO:0022607;cellular component assembly;2.65922570157586e-23!GO:0044455;mitochondrial membrane part;1.12137284314617e-21!GO:0043283;biopolymer metabolic process;1.92323955539346e-21!GO:0012505;endomembrane system;3.13100095338983e-21!GO:0015934;large ribosomal subunit;1.57083798568274e-20!GO:0051649;establishment of cellular localization;3.06900926550651e-20!GO:0010467;gene expression;3.66531645716561e-20!GO:0051641;cellular localization;3.9829829818653e-20!GO:0015935;small ribosomal subunit;5.76513311684034e-20!GO:0005654;nucleoplasm;8.98157110495649e-20!GO:0005681;spliceosome;1.15284287376037e-19!GO:0006457;protein folding;2.75529621418402e-19!GO:0031980;mitochondrial lumen;5.21021853475579e-19!GO:0005759;mitochondrial matrix;5.21021853475579e-19!GO:0044432;endoplasmic reticulum part;8.21800197879534e-19!GO:0016462;pyrophosphatase activity;1.19517188796512e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.23259522859287e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.57308354025515e-18!GO:0048770;pigment granule;1.61977202020353e-18!GO:0042470;melanosome;1.61977202020353e-18!GO:0005794;Golgi apparatus;2.42278191921104e-18!GO:0051186;cofactor metabolic process;3.5302453821738e-18!GO:0017111;nucleoside-triphosphatase activity;3.62656669736586e-18!GO:0005746;mitochondrial respiratory chain;5.45476854854854e-18!GO:0005730;nucleolus;2.59015146921094e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.65632234356483e-17!GO:0044451;nucleoplasm part;3.05565705768062e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.64979625733596e-16!GO:0000166;nucleotide binding;4.65664860130072e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.50785107612489e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.73376461371177e-15!GO:0006259;DNA metabolic process;2.06026250387528e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.71369775447364e-15!GO:0003954;NADH dehydrogenase activity;2.71369775447364e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.71369775447364e-15!GO:0016874;ligase activity;5.85680242096618e-15!GO:0016192;vesicle-mediated transport;6.91765666746517e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.4156952336287e-15!GO:0044265;cellular macromolecule catabolic process;1.38792091975977e-14!GO:0009057;macromolecule catabolic process;1.52080726894512e-14!GO:0022618;protein-RNA complex assembly;2.14021778116919e-14!GO:0043285;biopolymer catabolic process;2.22930890831794e-14!GO:0048193;Golgi vesicle transport;2.86072087245292e-14!GO:0006605;protein targeting;2.87949474263377e-14!GO:0044248;cellular catabolic process;3.34873533434978e-14!GO:0051082;unfolded protein binding;6.56109130215522e-14!GO:0008134;transcription factor binding;7.74186600746212e-14!GO:0030964;NADH dehydrogenase complex (quinone);9.10144170581364e-14!GO:0045271;respiratory chain complex I;9.10144170581364e-14!GO:0005747;mitochondrial respiratory chain complex I;9.10144170581364e-14!GO:0006732;coenzyme metabolic process;9.62286695234793e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.97279860172072e-14!GO:0042773;ATP synthesis coupled electron transport;9.97279860172072e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.06907905958627e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.84190968275272e-13!GO:0008135;translation factor activity, nucleic acid binding;2.62825793717359e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.90147930096471e-13!GO:0005761;mitochondrial ribosome;3.10404004250456e-13!GO:0000313;organellar ribosome;3.10404004250456e-13!GO:0005789;endoplasmic reticulum membrane;4.41612398477051e-13!GO:0007049;cell cycle;1.36114557614303e-12!GO:0009055;electron carrier activity;2.55381901448128e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.78682386685908e-12!GO:0006512;ubiquitin cycle;2.88760069964973e-12!GO:0042254;ribosome biogenesis and assembly;3.22336005151553e-12!GO:0009259;ribonucleotide metabolic process;3.85927645196653e-12!GO:0030163;protein catabolic process;4.29559509264652e-12!GO:0019941;modification-dependent protein catabolic process;4.54131973900109e-12!GO:0043632;modification-dependent macromolecule catabolic process;4.54131973900109e-12!GO:0044257;cellular protein catabolic process;4.84480248035188e-12!GO:0006511;ubiquitin-dependent protein catabolic process;9.05675998183315e-12!GO:0012501;programmed cell death;1.68445226887114e-11!GO:0005793;ER-Golgi intermediate compartment;1.94665485290767e-11!GO:0006163;purine nucleotide metabolic process;2.00296050973988e-11!GO:0016491;oxidoreductase activity;2.17852181478943e-11!GO:0009150;purine ribonucleotide metabolic process;2.2452358626556e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.74735526868357e-11!GO:0000375;RNA splicing, via transesterification reactions;2.74735526868357e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.74735526868357e-11!GO:0017076;purine nucleotide binding;2.80438648136752e-11!GO:0006915;apoptosis;3.14659433432143e-11!GO:0032553;ribonucleotide binding;4.75881903260898e-11!GO:0032555;purine ribonucleotide binding;4.75881903260898e-11!GO:0009260;ribonucleotide biosynthetic process;6.64285729348915e-11!GO:0006164;purine nucleotide biosynthetic process;1.21193181999025e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.29443517068755e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.39652802471733e-10!GO:0003743;translation initiation factor activity;1.92902595332509e-10!GO:0043412;biopolymer modification;2.52350109398402e-10!GO:0008219;cell death;4.57477394473483e-10!GO:0016265;death;4.57477394473483e-10!GO:0048523;negative regulation of cellular process;5.8492541530227e-10!GO:0022402;cell cycle process;5.95811353982064e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.24460377610504e-10!GO:0042623;ATPase activity, coupled;8.08029321265145e-10!GO:0009199;ribonucleoside triphosphate metabolic process;8.12651526799093e-10!GO:0016887;ATPase activity;8.82031023414589e-10!GO:0006913;nucleocytoplasmic transport;9.67401632521077e-10!GO:0051188;cofactor biosynthetic process;1.11379580188877e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.36717226950753e-09!GO:0009141;nucleoside triphosphate metabolic process;1.56782018248558e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.66513051286188e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.66513051286188e-09!GO:0051169;nuclear transport;2.05919204123914e-09!GO:0006399;tRNA metabolic process;2.63301792801556e-09!GO:0009056;catabolic process;3.01087319758426e-09!GO:0006464;protein modification process;3.41737558562005e-09!GO:0003712;transcription cofactor activity;3.59721676928045e-09!GO:0006413;translational initiation;4.00894558522554e-09!GO:0015986;ATP synthesis coupled proton transport;4.00894558522554e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.00894558522554e-09!GO:0044431;Golgi apparatus part;4.29153118106455e-09!GO:0051246;regulation of protein metabolic process;4.47916405818733e-09!GO:0005524;ATP binding;5.02831363872588e-09!GO:0030120;vesicle coat;5.12416270232739e-09!GO:0030662;coated vesicle membrane;5.12416270232739e-09!GO:0000278;mitotic cell cycle;5.77457192295091e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.88128868672201e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.88128868672201e-09!GO:0030554;adenyl nucleotide binding;7.30289856143892e-09!GO:0032559;adenyl ribonucleotide binding;9.07804429547998e-09!GO:0046034;ATP metabolic process;1.06138047827007e-08!GO:0009117;nucleotide metabolic process;1.11464364443168e-08!GO:0008639;small protein conjugating enzyme activity;1.19219045891037e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.42584601365021e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.42584601365021e-08!GO:0008565;protein transporter activity;1.44180521984282e-08!GO:0005768;endosome;1.4833228717979e-08!GO:0048475;coated membrane;1.56023042557823e-08!GO:0030117;membrane coat;1.56023042557823e-08!GO:0048519;negative regulation of biological process;1.86987998642769e-08!GO:0004842;ubiquitin-protein ligase activity;2.11621721554101e-08!GO:0009060;aerobic respiration;2.20681116766802e-08!GO:0019829;cation-transporting ATPase activity;2.30591885106039e-08!GO:0017038;protein import;3.03861241410783e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.35388131744129e-08!GO:0019787;small conjugating protein ligase activity;3.35855234974175e-08!GO:0006364;rRNA processing;3.49537474224437e-08!GO:0005788;endoplasmic reticulum lumen;3.50129624730087e-08!GO:0006446;regulation of translational initiation;3.50699451296504e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.68054864031207e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.02246626815219e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.02246626815219e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.02246626815219e-08!GO:0016072;rRNA metabolic process;5.05732185408398e-08!GO:0005635;nuclear envelope;6.68525930672674e-08!GO:0016023;cytoplasmic membrane-bound vesicle;7.07269492925122e-08!GO:0006754;ATP biosynthetic process;7.56246166115603e-08!GO:0006753;nucleoside phosphate metabolic process;7.56246166115603e-08!GO:0043067;regulation of programmed cell death;8.506567816215e-08!GO:0006461;protein complex assembly;8.58047304390232e-08!GO:0006091;generation of precursor metabolites and energy;9.04768386687759e-08!GO:0042981;regulation of apoptosis;1.00788747595697e-07!GO:0043038;amino acid activation;1.03654381895305e-07!GO:0006418;tRNA aminoacylation for protein translation;1.03654381895305e-07!GO:0043039;tRNA aminoacylation;1.03654381895305e-07!GO:0031988;membrane-bound vesicle;1.03654381895305e-07!GO:0045333;cellular respiration;1.09379494815999e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.13239644043734e-07!GO:0044453;nuclear membrane part;1.52418002320762e-07!GO:0051726;regulation of cell cycle;1.70299207212264e-07!GO:0016604;nuclear body;1.86230442833223e-07!GO:0009108;coenzyme biosynthetic process;1.8888810256683e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.89269602729415e-07!GO:0016881;acid-amino acid ligase activity;1.92184827897687e-07!GO:0005773;vacuole;1.92184827897687e-07!GO:0008026;ATP-dependent helicase activity;1.92877938673983e-07!GO:0043687;post-translational protein modification;2.72108424495147e-07!GO:0000074;regulation of progression through cell cycle;2.72658225492117e-07!GO:0031965;nuclear membrane;2.86226764851406e-07!GO:0043069;negative regulation of programmed cell death;2.86226764851406e-07!GO:0006974;response to DNA damage stimulus;4.08556650493722e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.47039175263393e-07!GO:0006916;anti-apoptosis;5.00071493564809e-07!GO:0003924;GTPase activity;5.10012403929341e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.29468612898715e-07!GO:0043066;negative regulation of apoptosis;5.71677702659008e-07!GO:0006323;DNA packaging;6.35020873622234e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.01848049753207e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.09761047996499e-07!GO:0007005;mitochondrion organization and biogenesis;7.52543290622196e-07!GO:0065002;intracellular protein transport across a membrane;8.60369074399969e-07!GO:0005798;Golgi-associated vesicle;8.60369074399969e-07!GO:0051187;cofactor catabolic process;8.89919851313854e-07!GO:0006099;tricarboxylic acid cycle;8.92709398433666e-07!GO:0046356;acetyl-CoA catabolic process;8.92709398433666e-07!GO:0031410;cytoplasmic vesicle;1.01323592381354e-06!GO:0031982;vesicle;1.10441925775133e-06!GO:0016787;hydrolase activity;1.20429612469854e-06!GO:0051276;chromosome organization and biogenesis;1.24979739506816e-06!GO:0065004;protein-DNA complex assembly;1.26288030227326e-06!GO:0016740;transferase activity;1.53178374074355e-06!GO:0000139;Golgi membrane;1.60686168256311e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.68425541773275e-06!GO:0006752;group transfer coenzyme metabolic process;1.86961371233437e-06!GO:0003676;nucleic acid binding;2.23685224481102e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.3541769235574e-06!GO:0000323;lytic vacuole;2.66365292579084e-06!GO:0005764;lysosome;2.66365292579084e-06!GO:0045259;proton-transporting ATP synthase complex;2.71987796413166e-06!GO:0009109;coenzyme catabolic process;3.09490023168885e-06!GO:0005643;nuclear pore;3.1067106151625e-06!GO:0006084;acetyl-CoA metabolic process;3.3393930588956e-06!GO:0031252;leading edge;3.55022182752087e-06!GO:0005770;late endosome;3.76754050657664e-06!GO:0044440;endosomal part;4.21242136703923e-06!GO:0010008;endosome membrane;4.21242136703923e-06!GO:0006333;chromatin assembly or disassembly;4.68011442996962e-06!GO:0004386;helicase activity;5.70779315004074e-06!GO:0016779;nucleotidyltransferase activity;6.56677597933938e-06!GO:0005905;coated pit;6.96182709614801e-06!GO:0000087;M phase of mitotic cell cycle;7.23582126438212e-06!GO:0007067;mitosis;8.57719216027859e-06!GO:0006366;transcription from RNA polymerase II promoter;9.02349109500688e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.21965168601533e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.28556780357973e-05!GO:0006281;DNA repair;1.29324273376953e-05!GO:0046930;pore complex;1.42069848451505e-05!GO:0006260;DNA replication;1.4961993617888e-05!GO:0006334;nucleosome assembly;1.69042665608835e-05!GO:0016853;isomerase activity;1.69042665608835e-05!GO:0045454;cell redox homeostasis;1.69131649251821e-05!GO:0009719;response to endogenous stimulus;1.72918614637234e-05!GO:0004298;threonine endopeptidase activity;1.95324497065165e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.97582749727076e-05!GO:0016607;nuclear speck;1.97582749727076e-05!GO:0051170;nuclear import;2.24398838753483e-05!GO:0048522;positive regulation of cellular process;2.28045101366167e-05!GO:0003697;single-stranded DNA binding;2.49299117288859e-05!GO:0005762;mitochondrial large ribosomal subunit;2.54284200582125e-05!GO:0000315;organellar large ribosomal subunit;2.54284200582125e-05!GO:0031497;chromatin assembly;2.86177867352e-05!GO:0009165;nucleotide biosynthetic process;2.86382364787337e-05!GO:0044262;cellular carbohydrate metabolic process;2.96869913595913e-05!GO:0008654;phospholipid biosynthetic process;3.84295975298841e-05!GO:0006606;protein import into nucleus;3.9672203403258e-05!GO:0003714;transcription corepressor activity;4.02341310321446e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.23213326326756e-05!GO:0033116;ER-Golgi intermediate compartment membrane;4.23867782419792e-05!GO:0000245;spliceosome assembly;4.29929171030853e-05!GO:0016567;protein ubiquitination;4.29929171030853e-05!GO:0022403;cell cycle phase;4.52907370689777e-05!GO:0030867;rough endoplasmic reticulum membrane;4.58516015839927e-05!GO:0032446;protein modification by small protein conjugation;5.29872160461098e-05!GO:0005694;chromosome;5.31564903223944e-05!GO:0019843;rRNA binding;5.40526140165968e-05!GO:0000151;ubiquitin ligase complex;5.56879796564296e-05!GO:0006403;RNA localization;5.56879796564296e-05!GO:0031968;organelle outer membrane;5.56879796564296e-05!GO:0050657;nucleic acid transport;6.09893556644114e-05!GO:0051236;establishment of RNA localization;6.09893556644114e-05!GO:0050658;RNA transport;6.09893556644114e-05!GO:0019867;outer membrane;6.21610529612106e-05!GO:0008361;regulation of cell size;6.57822323832126e-05!GO:0003724;RNA helicase activity;6.62663749615599e-05!GO:0005667;transcription factor complex;6.75500646386367e-05!GO:0016049;cell growth;8.01905608146113e-05!GO:0005769;early endosome;8.25123334922087e-05!GO:0003899;DNA-directed RNA polymerase activity;9.01310310697993e-05!GO:0044427;chromosomal part;9.38337252612235e-05!GO:0003713;transcription coactivator activity;9.75255695470209e-05!GO:0006793;phosphorus metabolic process;0.000100373382268466!GO:0006796;phosphate metabolic process;0.000100373382268466!GO:0030133;transport vesicle;0.00010042780654982!GO:0051301;cell division;0.000100776887404391!GO:0001558;regulation of cell growth;0.000102045300568455!GO:0016070;RNA metabolic process;0.00010268552052838!GO:0005048;signal sequence binding;0.00010403794632306!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000107644134949683!GO:0008092;cytoskeletal protein binding;0.000108626956344162!GO:0030029;actin filament-based process;0.000114167176210319!GO:0005525;GTP binding;0.00011517003403146!GO:0000785;chromatin;0.000115931246281542!GO:0016044;membrane organization and biogenesis;0.000115964150419521!GO:0043566;structure-specific DNA binding;0.000119165125154714!GO:0006613;cotranslational protein targeting to membrane;0.000122008088541374!GO:0031324;negative regulation of cellular metabolic process;0.000126112157230549!GO:0051789;response to protein stimulus;0.000138137807329863!GO:0006986;response to unfolded protein;0.000138137807329863!GO:0045786;negative regulation of progression through cell cycle;0.00015482882864531!GO:0016564;transcription repressor activity;0.000163879085355475!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000168880805836037!GO:0016859;cis-trans isomerase activity;0.000168945824523608!GO:0016563;transcription activator activity;0.000189204314923173!GO:0065009;regulation of a molecular function;0.00019806363577753!GO:0007243;protein kinase cascade;0.000203843099241609!GO:0005741;mitochondrial outer membrane;0.000208474727151946!GO:0006082;organic acid metabolic process;0.000219818473252643!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000223718127235719!GO:0015399;primary active transmembrane transporter activity;0.000223718127235719!GO:0009892;negative regulation of metabolic process;0.000241841074040665!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000245847331211608!GO:0019752;carboxylic acid metabolic process;0.000268691378618029!GO:0030663;COPI coated vesicle membrane;0.000283425363892597!GO:0030126;COPI vesicle coat;0.000283425363892597!GO:0016310;phosphorylation;0.000293569334618709!GO:0019899;enzyme binding;0.000296004261143353!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000298848326419678!GO:0030137;COPI-coated vesicle;0.000302319820205459!GO:0043284;biopolymer biosynthetic process;0.000328029932955566!GO:0016568;chromatin modification;0.000345211705740951!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000367684168961262!GO:0051427;hormone receptor binding;0.000396828083877092!GO:0005885;Arp2/3 protein complex;0.000413710802679873!GO:0008632;apoptotic program;0.000436059684309809!GO:0006414;translational elongation;0.000438906907805172!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000468613298320903!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000483663408842544!GO:0043681;protein import into mitochondrion;0.000516934445360045!GO:0032561;guanyl ribonucleotide binding;0.000530639785029103!GO:0019001;guanyl nucleotide binding;0.000530639785029103!GO:0030176;integral to endoplasmic reticulum membrane;0.000541690175650752!GO:0008250;oligosaccharyl transferase complex;0.000544940056791221!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000555539616244033!GO:0015630;microtubule cytoskeleton;0.000578042495046053!GO:0006891;intra-Golgi vesicle-mediated transport;0.000594424658682345!GO:0006626;protein targeting to mitochondrion;0.000616220040532664!GO:0000314;organellar small ribosomal subunit;0.000621499055610837!GO:0005763;mitochondrial small ribosomal subunit;0.000621499055610837!GO:0043021;ribonucleoprotein binding;0.0006375897476798!GO:0046474;glycerophospholipid biosynthetic process;0.000647250132496851!GO:0043623;cellular protein complex assembly;0.000709418481294855!GO:0035257;nuclear hormone receptor binding;0.000781389627075654!GO:0008186;RNA-dependent ATPase activity;0.00081065178044596!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000840218090069772!GO:0030658;transport vesicle membrane;0.000885464182047146!GO:0051920;peroxiredoxin activity;0.000904292300411017!GO:0007010;cytoskeleton organization and biogenesis;0.000978361436244502!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00104484694812992!GO:0051168;nuclear export;0.00110914065887608!GO:0051028;mRNA transport;0.00120039779614367!GO:0030659;cytoplasmic vesicle membrane;0.00121586658951523!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00122978148541097!GO:0030132;clathrin coat of coated pit;0.0012369101047016!GO:0030118;clathrin coat;0.00125059975703869!GO:0046467;membrane lipid biosynthetic process;0.0012687684001671!GO:0008610;lipid biosynthetic process;0.00129318045460326!GO:0051329;interphase of mitotic cell cycle;0.00129837300132303!GO:0018196;peptidyl-asparagine modification;0.00130970815946117!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00130970815946117!GO:0048518;positive regulation of biological process;0.00131896120545984!GO:0007006;mitochondrial membrane organization and biogenesis;0.00134693379427328!GO:0006612;protein targeting to membrane;0.00145317751423155!GO:0005813;centrosome;0.00149854650417615!GO:0006979;response to oxidative stress;0.00152308179676708!GO:0005774;vacuolar membrane;0.00160116499894027!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00165277562080001!GO:0004576;oligosaccharyl transferase activity;0.00165948324074372!GO:0007264;small GTPase mediated signal transduction;0.00171561769383174!GO:0046483;heterocycle metabolic process;0.00175111996202743!GO:0006118;electron transport;0.00175495189925383!GO:0030880;RNA polymerase complex;0.00184433641121253!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00186851230055824!GO:0004004;ATP-dependent RNA helicase activity;0.00188486807918446!GO:0000279;M phase;0.00192748941628289!GO:0015992;proton transport;0.00196405639503467!GO:0043492;ATPase activity, coupled to movement of substances;0.00197296916937022!GO:0046489;phosphoinositide biosynthetic process;0.0019808529747475!GO:0008047;enzyme activator activity;0.00211304950171781!GO:0044433;cytoplasmic vesicle part;0.00212519699960413!GO:0051325;interphase;0.00235788277319018!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00241181470388775!GO:0006818;hydrogen transport;0.00260263887838952!GO:0050662;coenzyme binding;0.00261931209689208!GO:0040008;regulation of growth;0.00266956026609943!GO:0030660;Golgi-associated vesicle membrane;0.00271885041480132!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00274936784242202!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00274936784242202!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00274936784242202!GO:0006950;response to stress;0.00277140535072!GO:0006778;porphyrin metabolic process;0.00284182980554936!GO:0033013;tetrapyrrole metabolic process;0.00284182980554936!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00293687496974466!GO:0048487;beta-tubulin binding;0.00296536370042685!GO:0005815;microtubule organizing center;0.00300724089313911!GO:0015631;tubulin binding;0.00307744238864044!GO:0006839;mitochondrial transport;0.00310318883554471!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00311041750842794!GO:0031072;heat shock protein binding;0.00347502181036477!GO:0030134;ER to Golgi transport vesicle;0.00351332254024705!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00363988366533993!GO:0008033;tRNA processing;0.00363988366533993!GO:0006007;glucose catabolic process;0.00371933664259583!GO:0006509;membrane protein ectodomain proteolysis;0.00371933664259583!GO:0033619;membrane protein proteolysis;0.00371933664259583!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00380818823307565!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00380818823307565!GO:0044452;nucleolar part;0.0038085692335253!GO:0045792;negative regulation of cell size;0.0038085692335253!GO:0017166;vinculin binding;0.00397573800899373!GO:0006595;polyamine metabolic process;0.00397573800899373!GO:0044437;vacuolar part;0.00408312121177278!GO:0046519;sphingoid metabolic process;0.00427204155285967!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00429740917274473!GO:0000428;DNA-directed RNA polymerase complex;0.00429740917274473!GO:0016126;sterol biosynthetic process;0.0045055733643378!GO:0012506;vesicle membrane;0.00453467322466984!GO:0030308;negative regulation of cell growth;0.0046066263742862!GO:0006807;nitrogen compound metabolic process;0.00462055940362738!GO:0042168;heme metabolic process;0.0046786036178118!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00477013782159356!GO:0048468;cell development;0.00503983701157677!GO:0050794;regulation of cellular process;0.00509987020258776!GO:0008243;plasminogen activator activity;0.00514955489453567!GO:0030027;lamellipodium;0.005181535801466!GO:0051540;metal cluster binding;0.00531600594734452!GO:0051536;iron-sulfur cluster binding;0.00531600594734452!GO:0048471;perinuclear region of cytoplasm;0.00531600594734452!GO:0030125;clathrin vesicle coat;0.00531600594734452!GO:0030665;clathrin coated vesicle membrane;0.00531600594734452!GO:0007033;vacuole organization and biogenesis;0.00531600594734452!GO:0007040;lysosome organization and biogenesis;0.00550368156923035!GO:0031902;late endosome membrane;0.00554858468985727!GO:0001726;ruffle;0.00571581137128938!GO:0005765;lysosomal membrane;0.00579779709145682!GO:0030127;COPII vesicle coat;0.00592879079824307!GO:0012507;ER to Golgi transport vesicle membrane;0.00592879079824307!GO:0009967;positive regulation of signal transduction;0.00600792942579442!GO:0006520;amino acid metabolic process;0.00607956356464494!GO:0022890;inorganic cation transmembrane transporter activity;0.00617633370725625!GO:0003729;mRNA binding;0.00622177820382622!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00631600957569966!GO:0000786;nucleosome;0.00656559206845534!GO:0003711;transcription elongation regulator activity;0.00657152215587619!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00664815025590335!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00664815025590335!GO:0005684;U2-dependent spliceosome;0.0066980665334512!GO:0005791;rough endoplasmic reticulum;0.0067081413754976!GO:0051087;chaperone binding;0.0068536857461981!GO:0006740;NADPH regeneration;0.00687547997159303!GO:0006098;pentose-phosphate shunt;0.00687547997159303!GO:0051539;4 iron, 4 sulfur cluster binding;0.00703153704132292!GO:0045045;secretory pathway;0.00715097460706195!GO:0030119;AP-type membrane coat adaptor complex;0.0071813384070891!GO:0000049;tRNA binding;0.0072847614070524!GO:0050790;regulation of catalytic activity;0.00735394538146569!GO:0006897;endocytosis;0.00784877229955447!GO:0010324;membrane invagination;0.00784877229955447!GO:0045941;positive regulation of transcription;0.00788569151006021!GO:0007050;cell cycle arrest;0.00803507618859623!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00812108248581466!GO:0015002;heme-copper terminal oxidase activity;0.00812108248581466!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00812108248581466!GO:0004129;cytochrome-c oxidase activity;0.00812108248581466!GO:0008154;actin polymerization and/or depolymerization;0.00829504020819525!GO:0051252;regulation of RNA metabolic process;0.0084627299191526!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0085011350620862!GO:0016481;negative regulation of transcription;0.00867042703628673!GO:0006672;ceramide metabolic process;0.00898196616459442!GO:0006417;regulation of translation;0.00905470803715344!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00905470803715344!GO:0003746;translation elongation factor activity;0.00906805521698844!GO:0005862;muscle thin filament tropomyosin;0.00926754049236079!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0093576575847647!GO:0008139;nuclear localization sequence binding;0.00952367960604167!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00952367960604167!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00965191789619004!GO:0048037;cofactor binding;0.00988992355146783!GO:0006779;porphyrin biosynthetic process;0.00989815075776374!GO:0033014;tetrapyrrole biosynthetic process;0.00989815075776374!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00996045086919467!GO:0009308;amine metabolic process;0.0101121166013613!GO:0048500;signal recognition particle;0.0102877382823716!GO:0030131;clathrin adaptor complex;0.010324716352135!GO:0006405;RNA export from nucleus;0.0103893583138168!GO:0051287;NAD binding;0.0105610840214275!GO:0045893;positive regulation of transcription, DNA-dependent;0.011005092443069!GO:0005096;GTPase activator activity;0.0110359407444034!GO:0007265;Ras protein signal transduction;0.0114295479304977!GO:0006650;glycerophospholipid metabolic process;0.0115739451984545!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0115832664394184!GO:0042802;identical protein binding;0.0118541412304032!GO:0004177;aminopeptidase activity;0.0121162900678714!GO:0043433;negative regulation of transcription factor activity;0.01237131982479!GO:0006497;protein amino acid lipidation;0.0129435924526539!GO:0008180;signalosome;0.0130197270543906!GO:0006401;RNA catabolic process;0.013204165536744!GO:0005975;carbohydrate metabolic process;0.0132251346636255!GO:0030041;actin filament polymerization;0.0133475233740607!GO:0031301;integral to organelle membrane;0.0133513943650395!GO:0016363;nuclear matrix;0.013869441471893!GO:0006383;transcription from RNA polymerase III promoter;0.0141162069786939!GO:0005832;chaperonin-containing T-complex;0.0142644300023481!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0144212891060393!GO:0005819;spindle;0.0145368747291104!GO:0031418;L-ascorbic acid binding;0.0145941011701245!GO:0000059;protein import into nucleus, docking;0.0146668691110859!GO:0009112;nucleobase metabolic process;0.0148130459657966!GO:0009889;regulation of biosynthetic process;0.0148498511195639!GO:0016197;endosome transport;0.0149498781062236!GO:0043488;regulation of mRNA stability;0.0158420139835973!GO:0043487;regulation of RNA stability;0.0158420139835973!GO:0005869;dynactin complex;0.0160182967131445!GO:0006783;heme biosynthetic process;0.016314205339479!GO:0006354;RNA elongation;0.016338645377761!GO:0030521;androgen receptor signaling pathway;0.0165738152072628!GO:0006402;mRNA catabolic process;0.01734046938879!GO:0051128;regulation of cellular component organization and biogenesis;0.0174796288159519!GO:0005996;monosaccharide metabolic process;0.0175037968500172!GO:0035258;steroid hormone receptor binding;0.0175746662000773!GO:0035035;histone acetyltransferase binding;0.0179985574869576!GO:0019318;hexose metabolic process;0.0181561724954277!GO:0006289;nucleotide-excision repair;0.0183220522129636!GO:0019206;nucleoside kinase activity;0.0191361886434931!GO:0031529;ruffle organization and biogenesis;0.0194054457419325!GO:0016272;prefoldin complex;0.0195118583507316!GO:0008637;apoptotic mitochondrial changes;0.0195118583507316!GO:0003684;damaged DNA binding;0.0195772548341815!GO:0005092;GDP-dissociation inhibitor activity;0.0200172539937223!GO:0043022;ribosome binding;0.0201307195215569!GO:0006695;cholesterol biosynthetic process;0.0202617763472779!GO:0031326;regulation of cellular biosynthetic process;0.0210333363988445!GO:0005100;Rho GTPase activator activity;0.0219557487721757!GO:0007021;tubulin folding;0.0219563328658967!GO:0006506;GPI anchor biosynthetic process;0.02209864838322!GO:0016408;C-acyltransferase activity;0.02209864838322!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0226789348108703!GO:0003779;actin binding;0.0226804503305233!GO:0009303;rRNA transcription;0.0228880092014371!GO:0008538;proteasome activator activity;0.0231242396360882!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.023564498852923!GO:0045047;protein targeting to ER;0.023564498852923!GO:0046365;monosaccharide catabolic process;0.0237784220606682!GO:0031543;peptidyl-proline dioxygenase activity;0.0245365597128336!GO:0033673;negative regulation of kinase activity;0.0248916120103901!GO:0006469;negative regulation of protein kinase activity;0.0248916120103901!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0251404255751734!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0254168060916786!GO:0019798;procollagen-proline dioxygenase activity;0.0254168060916786!GO:0051101;regulation of DNA binding;0.025539794172377!GO:0003678;DNA helicase activity;0.0262359160173834!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0262359160173834!GO:0008312;7S RNA binding;0.0263195868317095!GO:0051348;negative regulation of transferase activity;0.0267313058127297!GO:0048144;fibroblast proliferation;0.0269602382412857!GO:0048145;regulation of fibroblast proliferation;0.0269602382412857!GO:0009124;nucleoside monophosphate biosynthetic process;0.0272971969723587!GO:0009123;nucleoside monophosphate metabolic process;0.0272971969723587!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0274898586866362!GO:0022408;negative regulation of cell-cell adhesion;0.0279005338020564!GO:0000030;mannosyltransferase activity;0.027924547964515!GO:0001666;response to hypoxia;0.0280049525667745!GO:0030149;sphingolipid catabolic process;0.0284383741318312!GO:0003756;protein disulfide isomerase activity;0.0285063860144873!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0285063860144873!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0287999615852152!GO:0033043;regulation of organelle organization and biogenesis;0.0287999615852152!GO:0000096;sulfur amino acid metabolic process;0.0289249357468938!GO:0045926;negative regulation of growth;0.0294458368913175!GO:0006611;protein export from nucleus;0.0296264584317991!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0306009274050643!GO:0007034;vacuolar transport;0.031353303517713!GO:0031272;regulation of pseudopodium formation;0.0315123776762752!GO:0031269;pseudopodium formation;0.0315123776762752!GO:0031344;regulation of cell projection organization and biogenesis;0.0315123776762752!GO:0031268;pseudopodium organization and biogenesis;0.0315123776762752!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0315123776762752!GO:0031274;positive regulation of pseudopodium formation;0.0315123776762752!GO:0006505;GPI anchor metabolic process;0.0318497757670816!GO:0042158;lipoprotein biosynthetic process;0.0325154091268205!GO:0000082;G1/S transition of mitotic cell cycle;0.0325938843136684!GO:0030032;lamellipodium biogenesis;0.033186428432126!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.033652408143666!GO:0006643;membrane lipid metabolic process;0.0339131218986591!GO:0045892;negative regulation of transcription, DNA-dependent;0.0340459431142692!GO:0000209;protein polyubiquitination;0.0343058278887996!GO:0030433;ER-associated protein catabolic process;0.0343533469562047!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0343533469562047!GO:0019320;hexose catabolic process;0.0344286288711034!GO:0009161;ribonucleoside monophosphate metabolic process;0.0350281659705834!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0350281659705834!GO:0051098;regulation of binding;0.0353223981774519!GO:0030384;phosphoinositide metabolic process;0.0356500846944843!GO:0001953;negative regulation of cell-matrix adhesion;0.0356670485697312!GO:0050811;GABA receptor binding;0.0368698667562965!GO:0000339;RNA cap binding;0.0373812396611631!GO:0006635;fatty acid beta-oxidation;0.0377818350771988!GO:0006352;transcription initiation;0.0380853532895527!GO:0008022;protein C-terminus binding;0.0384105352312471!GO:0043281;regulation of caspase activity;0.0384292481268467!GO:0016860;intramolecular oxidoreductase activity;0.0387011113064846!GO:0008147;structural constituent of bone;0.0389352273167734!GO:0051270;regulation of cell motility;0.0398466978672624!GO:0006096;glycolysis;0.0398631122183703!GO:0006519;amino acid and derivative metabolic process;0.0402702226633507!GO:0008652;amino acid biosynthetic process;0.0403961829637058!GO:0009451;RNA modification;0.0403961829637058!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0405390704564197!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0405404966176452!GO:0005758;mitochondrial intermembrane space;0.0406045931651629!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0409702523668417!GO:0006066;alcohol metabolic process;0.0409757370894852!GO:0046164;alcohol catabolic process;0.0409820869160244!GO:0009116;nucleoside metabolic process;0.0419548610475203!GO:0006739;NADP metabolic process;0.042922917137291!GO:0046426;negative regulation of JAK-STAT cascade;0.042922917137291!GO:0043065;positive regulation of apoptosis;0.0432230025865585!GO:0045334;clathrin-coated endocytic vesicle;0.0435863627868773!GO:0051336;regulation of hydrolase activity;0.0442824275267186!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0443421189209552!GO:0030911;TPR domain binding;0.0446434187527514!GO:0030503;regulation of cell redox homeostasis;0.0450594728767663!GO:0045936;negative regulation of phosphate metabolic process;0.0454635804137359!GO:0030145;manganese ion binding;0.0458063848506338!GO:0006665;sphingolipid metabolic process;0.0458495570999633!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0459195445427686!GO:0006749;glutathione metabolic process;0.0460337408969563!GO:0030031;cell projection biogenesis;0.0464351892733888!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.046460531507771!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.046460531507771!GO:0009126;purine nucleoside monophosphate metabolic process;0.046460531507771!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.046460531507771!GO:0004003;ATP-dependent DNA helicase activity;0.0465580600596056!GO:0030833;regulation of actin filament polymerization;0.0470077563559395!GO:0006261;DNA-dependent DNA replication;0.0473068907186267!GO:0043068;positive regulation of programmed cell death;0.0479152941391559!GO:0030128;clathrin coat of endocytic vesicle;0.047923867009359!GO:0030669;clathrin-coated endocytic vesicle membrane;0.047923867009359!GO:0030122;AP-2 adaptor complex;0.047923867009359!GO:0006767;water-soluble vitamin metabolic process;0.0483762780142368!GO:0051272;positive regulation of cell motility;0.048490918567336!GO:0040017;positive regulation of locomotion;0.048490918567336!GO:0031124;mRNA 3'-end processing;0.0486639346539061!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0487813004957416!GO:0006376;mRNA splice site selection;0.0488600575049497!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0488600575049497!GO:0048146;positive regulation of fibroblast proliferation;0.0488600575049497!GO:0032940;secretion by cell;0.0493533187236106!GO:0006733;oxidoreduction coenzyme metabolic process;0.0498390486085922 | |||
|sample_id=11360 | |sample_id=11360 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=HOX{A5,B5}:1.60120974889;GCM1,2:1.50868766871;GTF2A1,2:1.49402674981;CRX:1.43049391935;TLX1..3_NFIC{dimer}:1.15830587012;HES1:1.15790409083;ZNF238:1.10103792666;SRF:1.07937375309;ONECUT1,2:1.04219395047;POU3F1..4:1.02384424807;HSF1,2:1.01953062714;TAL1_TCF{3,4,12}:0.986410457435;bHLH_family:0.982174244259;ZBTB6:0.952474588504;GLI1..3:0.923442897605;TFCP2:0.922456399588;HAND1,2:0.885526944581;TBP:0.855709066395;NR3C1:0.838020362706;EBF1:0.812641885806;ZNF148:0.799096237025;NKX2-2,8:0.79223586376;TP53:0.780234835491;ZNF423:0.759108700728;NFE2L1:0.754827557757;ALX4:0.750861649041;GZF1:0.679009116564;SMAD1..7,9:0.651011579557;TEAD1:0.638942325187;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.631825437054;PPARG:0.609842276236;MYBL2:0.576096475521;NFE2L2:0.568678379557;HBP1_HMGB_SSRP1_UBTF:0.565388998691;LHX3,4:0.563937441105;IKZF1:0.56070885052;NKX3-2:0.558447096243;GFI1B:0.550837163933;LEF1_TCF7_TCF7L1,2:0.545524233453;ADNP_IRX_SIX_ZHX:0.538707312409;EN1,2:0.521196999439;NHLH1,2:0.491696779361;HOX{A6,A7,B6,B7}:0.475214630154;PAX8:0.469129516626;FOSL2:0.44948349119;BACH2:0.446775321075;HLF:0.434326977905;ZIC1..3:0.430803430726;FOS_FOS{B,L1}_JUN{B,D}:0.429447359071;NFATC1..3:0.417066879549;TFAP4:0.407047317772;REST:0.399593231793;XCPE1{core}:0.398422965546;HIF1A:0.362384592132;TBX4,5:0.342663766536;JUN:0.324140571934;POU2F1..3:0.31474281532;STAT5{A,B}:0.311250313172;SOX17:0.306127765841;HIC1:0.304983481245;POU1F1:0.304308287911;MAFB:0.303249105876;ELK1,4_GABP{A,B1}:0.291489933432;FOXL1:0.272431449555;CDC5L:0.271277363501;PBX1:0.26787007266;ATF6:0.238078732899;GATA6:0.235101646942;FOX{I1,J2}:0.226975450092;KLF4:0.224397347081;HNF1A:0.192178145572;SOX{8,9,10}:0.183003042682;NFE2:0.181478042556;NFIL3:0.162013647583;TFAP2B:0.159067321769;TFAP2{A,C}:0.155245944858;PRRX1,2:0.149733772078;NANOG:0.136314481093;GTF2I:0.133308509541;MTF1:0.114286207764;AR:0.103355390122;HMX1:0.0839410660541;HMGA1,2:0.0715925820013;RXRA_VDR{dimer}:0.0694533907344;TLX2:0.0635424769123;NR5A1,2:0.0634108261666;ESR1:0.0606030956267;MTE{core}:0.0605221935987;PAX5:0.0553666038278;HOX{A4,D4}:0.0363009582973;SP1:0.0354544894446;MEF2{A,B,C,D}:0.0159341150352;ETS1,2:-0.007116641432;CEBPA,B_DDIT3:-0.0202024381717;PRDM1:-0.0511270386142;POU5F1:-0.061199806587;RXR{A,B,G}:-0.0629226183195;LMO2:-0.0763992843655;NFKB1_REL_RELA:-0.0831423959087;XBP1:-0.085718386087;ESRRA:-0.0929357732289;T:-0.0939870951748;ARID5B:-0.0990097686987;NFIX:-0.103556934928;ZNF384:-0.129982485002;UFEwm:-0.141888614737;VSX1,2:-0.148442984826;MZF1:-0.15207692133;HNF4A_NR2F1,2:-0.154836466071;EVI1:-0.15670125516;RUNX1..3:-0.166877836262;STAT2,4,6:-0.171322236646;FOXM1:-0.175200462738;POU6F1:-0.185270184826;RREB1:-0.195144183538;SOX2:-0.195644421538;RFX1:-0.207789177892;ELF1,2,4:-0.230064478809;MYFfamily:-0.23291717728;PAX1,9:-0.234677569786;GATA4:-0.282182373235;SPIB:-0.285406750387;NR1H4:-0.293051092985;PAX2:-0.296422363931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.296958150634;NR6A1:-0.297424889362;PATZ1:-0.303578968948;HOXA9_MEIS1:-0.312117976727;OCT4_SOX2{dimer}:-0.315389689719;AHR_ARNT_ARNT2:-0.320709967763;FOXQ1:-0.325441394669;TFDP1:-0.340712246038;MYB:-0.349915513202;YY1:-0.368730364058;SPZ1:-0.376405105565;TGIF1:-0.404343631567;SOX5:-0.405997615452;GFI1:-0.407328545165;AIRE:-0.412446846436;MED-1{core}:-0.418659450172;SPI1:-0.429096127847;ZNF143:-0.436113030982;PAX3,7:-0.455224139672;MYOD1:-0.45866974119;MAZ:-0.461286664376;RORA:-0.463736490955;NKX2-3_NKX2-5:-0.472301544631;EP300:-0.513115059991;NRF1:-0.517275469032;PITX1..3:-0.52835257613;ZFP161:-0.536131654821;ZEB1:-0.542506111322;SNAI1..3:-0.558195362978;EGR1..3:-0.565742621687;ATF2:-0.573234025017;FOX{F1,F2,J1}:-0.585774266195;PAX6:-0.585792433569;FOX{D1,D2}:-0.593738039915;DBP:-0.601936233502;NFY{A,B,C}:-0.60487858017;NANOG{mouse}:-0.609753706635;IRF1,2:-0.617737534419;FOXO1,3,4:-0.622944398663;NKX3-1:-0.63029263218;TOPORS:-0.640965203093;ATF5_CREB3:-0.65803938125;FOXA2:-0.700778864669;E2F1..5:-0.712371491595;ALX1:-0.71842341119;TEF:-0.752011297933;IRF7:-0.774758938073;FOXD3:-0.816430335786;SREBF1,2:-0.824997464143;CREB1:-0.880201723042;CUX2:-0.90509788778;DMAP1_NCOR{1,2}_SMARC:-0.913968938645;FOXP3:-0.964089476856;NKX6-1,2:-1.03104709757;CDX1,2,4:-1.0525143482;IKZF2:-1.13262690796;PAX4:-1.1439080548;BREu{core}:-1.14480392396;ATF4:-1.148681955;FOXN1:-1.19494512036;FOXP1:-1.30706533475;RFX2..5_RFXANK_RFXAP:-1.3247221982;RBPJ:-1.35870384626;ZBTB16:-1.39500426479;PDX1:-1.39521994329;NKX2-1,4:-1.46577558969;STAT1,3:-1.70221233155;BPTF:-1.71888164833 | |top_motifs=HOX{A5,B5}:1.60120974889;GCM1,2:1.50868766871;GTF2A1,2:1.49402674981;CRX:1.43049391935;TLX1..3_NFIC{dimer}:1.15830587012;HES1:1.15790409083;ZNF238:1.10103792666;SRF:1.07937375309;ONECUT1,2:1.04219395047;POU3F1..4:1.02384424807;HSF1,2:1.01953062714;TAL1_TCF{3,4,12}:0.986410457435;bHLH_family:0.982174244259;ZBTB6:0.952474588504;GLI1..3:0.923442897605;TFCP2:0.922456399588;HAND1,2:0.885526944581;TBP:0.855709066395;NR3C1:0.838020362706;EBF1:0.812641885806;ZNF148:0.799096237025;NKX2-2,8:0.79223586376;TP53:0.780234835491;ZNF423:0.759108700728;NFE2L1:0.754827557757;ALX4:0.750861649041;GZF1:0.679009116564;SMAD1..7,9:0.651011579557;TEAD1:0.638942325187;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.631825437054;PPARG:0.609842276236;MYBL2:0.576096475521;NFE2L2:0.568678379557;HBP1_HMGB_SSRP1_UBTF:0.565388998691;LHX3,4:0.563937441105;IKZF1:0.56070885052;NKX3-2:0.558447096243;GFI1B:0.550837163933;LEF1_TCF7_TCF7L1,2:0.545524233453;ADNP_IRX_SIX_ZHX:0.538707312409;EN1,2:0.521196999439;NHLH1,2:0.491696779361;HOX{A6,A7,B6,B7}:0.475214630154;PAX8:0.469129516626;FOSL2:0.44948349119;BACH2:0.446775321075;HLF:0.434326977905;ZIC1..3:0.430803430726;FOS_FOS{B,L1}_JUN{B,D}:0.429447359071;NFATC1..3:0.417066879549;TFAP4:0.407047317772;REST:0.399593231793;XCPE1{core}:0.398422965546;HIF1A:0.362384592132;TBX4,5:0.342663766536;JUN:0.324140571934;POU2F1..3:0.31474281532;STAT5{A,B}:0.311250313172;SOX17:0.306127765841;HIC1:0.304983481245;POU1F1:0.304308287911;MAFB:0.303249105876;ELK1,4_GABP{A,B1}:0.291489933432;FOXL1:0.272431449555;CDC5L:0.271277363501;PBX1:0.26787007266;ATF6:0.238078732899;GATA6:0.235101646942;FOX{I1,J2}:0.226975450092;KLF4:0.224397347081;HNF1A:0.192178145572;SOX{8,9,10}:0.183003042682;NFE2:0.181478042556;NFIL3:0.162013647583;TFAP2B:0.159067321769;TFAP2{A,C}:0.155245944858;PRRX1,2:0.149733772078;NANOG:0.136314481093;GTF2I:0.133308509541;MTF1:0.114286207764;AR:0.103355390122;HMX1:0.0839410660541;HMGA1,2:0.0715925820013;RXRA_VDR{dimer}:0.0694533907344;TLX2:0.0635424769123;NR5A1,2:0.0634108261666;ESR1:0.0606030956267;MTE{core}:0.0605221935987;PAX5:0.0553666038278;HOX{A4,D4}:0.0363009582973;SP1:0.0354544894446;MEF2{A,B,C,D}:0.0159341150352;ETS1,2:-0.007116641432;CEBPA,B_DDIT3:-0.0202024381717;PRDM1:-0.0511270386142;POU5F1:-0.061199806587;RXR{A,B,G}:-0.0629226183195;LMO2:-0.0763992843655;NFKB1_REL_RELA:-0.0831423959087;XBP1:-0.085718386087;ESRRA:-0.0929357732289;T:-0.0939870951748;ARID5B:-0.0990097686987;NFIX:-0.103556934928;ZNF384:-0.129982485002;UFEwm:-0.141888614737;VSX1,2:-0.148442984826;MZF1:-0.15207692133;HNF4A_NR2F1,2:-0.154836466071;EVI1:-0.15670125516;RUNX1..3:-0.166877836262;STAT2,4,6:-0.171322236646;FOXM1:-0.175200462738;POU6F1:-0.185270184826;RREB1:-0.195144183538;SOX2:-0.195644421538;RFX1:-0.207789177892;ELF1,2,4:-0.230064478809;MYFfamily:-0.23291717728;PAX1,9:-0.234677569786;GATA4:-0.282182373235;SPIB:-0.285406750387;NR1H4:-0.293051092985;PAX2:-0.296422363931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.296958150634;NR6A1:-0.297424889362;PATZ1:-0.303578968948;HOXA9_MEIS1:-0.312117976727;OCT4_SOX2{dimer}:-0.315389689719;AHR_ARNT_ARNT2:-0.320709967763;FOXQ1:-0.325441394669;TFDP1:-0.340712246038;MYB:-0.349915513202;YY1:-0.368730364058;SPZ1:-0.376405105565;TGIF1:-0.404343631567;SOX5:-0.405997615452;GFI1:-0.407328545165;AIRE:-0.412446846436;MED-1{core}:-0.418659450172;SPI1:-0.429096127847;ZNF143:-0.436113030982;PAX3,7:-0.455224139672;MYOD1:-0.45866974119;MAZ:-0.461286664376;RORA:-0.463736490955;NKX2-3_NKX2-5:-0.472301544631;EP300:-0.513115059991;NRF1:-0.517275469032;PITX1..3:-0.52835257613;ZFP161:-0.536131654821;ZEB1:-0.542506111322;SNAI1..3:-0.558195362978;EGR1..3:-0.565742621687;ATF2:-0.573234025017;FOX{F1,F2,J1}:-0.585774266195;PAX6:-0.585792433569;FOX{D1,D2}:-0.593738039915;DBP:-0.601936233502;NFY{A,B,C}:-0.60487858017;NANOG{mouse}:-0.609753706635;IRF1,2:-0.617737534419;FOXO1,3,4:-0.622944398663;NKX3-1:-0.63029263218;TOPORS:-0.640965203093;ATF5_CREB3:-0.65803938125;FOXA2:-0.700778864669;E2F1..5:-0.712371491595;ALX1:-0.71842341119;TEF:-0.752011297933;IRF7:-0.774758938073;FOXD3:-0.816430335786;SREBF1,2:-0.824997464143;CREB1:-0.880201723042;CUX2:-0.90509788778;DMAP1_NCOR{1,2}_SMARC:-0.913968938645;FOXP3:-0.964089476856;NKX6-1,2:-1.03104709757;CDX1,2,4:-1.0525143482;IKZF2:-1.13262690796;PAX4:-1.1439080548;BREu{core}:-1.14480392396;ATF4:-1.148681955;FOXN1:-1.19494512036;FOXP1:-1.30706533475;RFX2..5_RFXANK_RFXAP:-1.3247221982;RBPJ:-1.35870384626;ZBTB16:-1.39500426479;PDX1:-1.39521994329;NKX2-1,4:-1.46577558969;STAT1,3:-1.70221233155;BPTF:-1.71888164833 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11360-117I1;search_select_hide=table117:FF:11360-117I1 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Smooth Muscle Cells - Aortic, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11305 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11305
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11305
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.426 |
| 10 | 10 | 0.4 |
| 100 | 100 | 0.938 |
| 101 | 101 | 0.993 |
| 102 | 102 | 0.983 |
| 103 | 103 | 0.517 |
| 104 | 104 | 0.256 |
| 105 | 105 | 0.193 |
| 106 | 106 | 0.025 |
| 107 | 107 | 0.0319 |
| 108 | 108 | 0.477 |
| 109 | 109 | 0.0612 |
| 11 | 11 | 0.0939 |
| 110 | 110 | 0.333 |
| 111 | 111 | 0.502 |
| 112 | 112 | 0.38 |
| 113 | 113 | 0.302 |
| 114 | 114 | 0.141 |
| 115 | 115 | 0.97 |
| 116 | 116 | 0.148 |
| 117 | 117 | 0.963 |
| 118 | 118 | 0.931 |
| 119 | 119 | 0.175 |
| 12 | 12 | 0.627 |
| 120 | 120 | 0.202 |
| 121 | 121 | 0.685 |
| 122 | 122 | 0.531 |
| 123 | 123 | 0.0776 |
| 124 | 124 | 0.71 |
| 125 | 125 | 0.928 |
| 126 | 126 | 0.7 |
| 127 | 127 | 0.184 |
| 128 | 128 | 0.146 |
| 129 | 129 | 0.815 |
| 13 | 13 | 0.612 |
| 130 | 130 | 0.164 |
| 131 | 131 | 0.257 |
| 132 | 132 | 0.935 |
| 133 | 133 | 0.568 |
| 134 | 134 | 0.151 |
| 135 | 135 | 0.152 |
| 136 | 136 | 0.585 |
| 137 | 137 | 0.774 |
| 138 | 138 | 0.826 |
| 139 | 139 | 0.519 |
| 14 | 14 | 0.999 |
| 140 | 140 | 0.599 |
| 141 | 141 | 0.387 |
| 142 | 142 | 0.96 |
| 143 | 143 | 0.0082 |
| 144 | 144 | 0.79 |
| 145 | 145 | 0.117 |
| 146 | 146 | 0.433 |
| 147 | 147 | 0.0977 |
| 148 | 148 | 0.44 |
| 149 | 149 | 0.1 |
| 15 | 15 | 0.376 |
| 150 | 150 | 0.204 |
| 151 | 151 | 0.291 |
| 152 | 152 | 0.0253 |
| 153 | 153 | 0.883 |
| 154 | 154 | 0.489 |
| 155 | 155 | 0.0406 |
| 156 | 156 | 0.929 |
| 157 | 157 | 0.795 |
| 158 | 158 | 0.169 |
| 159 | 159 | 0.527 |
| 16 | 16 | 0.268 |
| 160 | 160 | 0.0705 |
| 161 | 161 | 0.444 |
| 162 | 162 | 0.923 |
| 163 | 163 | 1 |
| 164 | 164 | 0.692 |
| 165 | 165 | 0.64 |
| 166 | 166 | 0.441 |
| 167 | 167 | 0.821 |
| 168 | 168 | 0.297 |
| 169 | 169 | 0.0452 |
| 17 | 17 | 0.0517 |
| 18 | 18 | 0.0472 |
| 19 | 19 | 0.0911 |
| 2 | 2 | 0.406 |
| 20 | 20 | 0.315 |
| 21 | 21 | 0.575 |
| 22 | 22 | 0.137 |
| 23 | 23 | 0.136 |
| 24 | 24 | 0.157 |
| 25 | 25 | 0.498 |
| 26 | 26 | 0.193 |
| 27 | 27 | 0.452 |
| 28 | 28 | 0.293 |
| 29 | 29 | 0.519 |
| 3 | 3 | 0.459 |
| 30 | 30 | 0.164 |
| 31 | 31 | 0.547 |
| 32 | 32 | 0.0344 |
| 33 | 33 | 0.938 |
| 34 | 34 | 0.347 |
| 35 | 35 | 0.694 |
| 36 | 36 | 0.799 |
| 37 | 37 | 0.131 |
| 38 | 38 | 0.37 |
| 39 | 39 | 0.312 |
| 4 | 4 | 0.458 |
| 40 | 40 | 0.145 |
| 41 | 41 | 0.319 |
| 42 | 42 | 0.519 |
| 43 | 43 | 0.257 |
| 44 | 44 | 0.937 |
| 45 | 45 | 0.191 |
| 46 | 46 | 0.138 |
| 47 | 47 | 0.454 |
| 48 | 48 | 0.166 |
| 49 | 49 | 0.396 |
| 5 | 5 | 0.663 |
| 50 | 50 | 0.411 |
| 51 | 51 | 0.865 |
| 52 | 52 | 0.312 |
| 53 | 53 | 0.833 |
| 54 | 54 | 0.531 |
| 55 | 55 | 0.134 |
| 56 | 56 | 0.423 |
| 57 | 57 | 0.376 |
| 58 | 58 | 0.893 |
| 59 | 59 | 0.103 |
| 6 | 6 | 0.756 |
| 60 | 60 | 0.351 |
| 61 | 61 | 0.846 |
| 62 | 62 | 0.951 |
| 63 | 63 | 0.158 |
| 64 | 64 | 0.287 |
| 65 | 65 | 0.117 |
| 66 | 66 | 0.365 |
| 67 | 67 | 0.695 |
| 68 | 68 | 0.163 |
| 69 | 69 | 0.376 |
| 7 | 7 | 0.808 |
| 70 | 70 | 0.0436 |
| 71 | 71 | 0.177 |
| 72 | 72 | 0.667 |
| 73 | 73 | 0.00854 |
| 74 | 74 | 0.905 |
| 75 | 75 | 0.538 |
| 76 | 76 | 0.82 |
| 77 | 77 | 0.0164 |
| 78 | 78 | 0.722 |
| 79 | 79 | 0.3 |
| 8 | 8 | 0.0358 |
| 80 | 80 | 0.221 |
| 81 | 81 | 0.354 |
| 82 | 82 | 0.385 |
| 83 | 83 | 0.524 |
| 84 | 84 | 0.885 |
| 85 | 85 | 0.146 |
| 86 | 86 | 0.836 |
| 87 | 87 | 0.08 |
| 88 | 88 | 0.0903 |
| 89 | 89 | 0.0262 |
| 9 | 9 | 0.256 |
| 90 | 90 | 0.878 |
| 91 | 91 | 0.189 |
| 92 | 92 | 0.535 |
| 93 | 93 | 0.685 |
| 94 | 94 | 0.438 |
| 95 | 95 | 0.299 |
| 96 | 96 | 0.797 |
| 97 | 97 | 0.16 |
| 98 | 98 | 0.729 |
| 99 | 99 | 0.0167 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11305
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
