FF:11405-118E1: Difference between revisions

Latest revision as of 17:58, 4 June 2020

Name:	Prostate Stromal Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12015
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	prostate
dev stage	40 years old adult
sex	male
age	40
cell type	prostatic stromal cell
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005095

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12015		CAGE		DRX008424		DRR009296

Accession ID Hg19

Library id		BAM		CTSS
CNhs12015		DRZ000721		DRZ002106

Accession ID Hg38

Library id		BAM		CTSS
CNhs12015		DRZ012071		DRZ013456

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005095

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.CGATGT		sRNA-Seq		DRX037011		DRR041377

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.CGATGT		DRZ007019

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0713
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.33
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.283
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.183
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.143
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.00175
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0535
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.767
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0798
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.357
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0535
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0114
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0393
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.488
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0214
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.311
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.144
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.456
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.144
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.101
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.101
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.376
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.693
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.144
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.631
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.133
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.411
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12015

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0325
MA0003.1	MA0003.1	0.376
MA0004.1	MA0004.1	0.409
MA0006.1	MA0006.1	0.11
MA0007.1	MA0007.1	0.671
MA0009.1	MA0009.1	0.579
MA0014.1	MA0014.1	0.316
MA0017.1	MA0017.1	0.708
MA0018.2	MA0018.2	8.99477e-7
MA0019.1	MA0019.1	0.865
MA0024.1	MA0024.1	1.80592e-5
MA0025.1	MA0025.1	0.00816
MA0027.1	MA0027.1	0.46
MA0028.1	MA0028.1	0.00481
MA0029.1	MA0029.1	0.79
MA0030.1	MA0030.1	0.309
MA0031.1	MA0031.1	0.201
MA0035.2	MA0035.2	0.264
MA0038.1	MA0038.1	0.0201
MA0039.2	MA0039.2	0.0164
MA0040.1	MA0040.1	0.128
MA0041.1	MA0041.1	0.513
MA0042.1	MA0042.1	0.535
MA0043.1	MA0043.1	0.00217
MA0046.1	MA0046.1	0.401
MA0047.2	MA0047.2	0.212
MA0048.1	MA0048.1	0.341
MA0050.1	MA0050.1	0.743
MA0051.1	MA0051.1	0.467
MA0052.1	MA0052.1	0.0402
MA0055.1	MA0055.1	0.587
MA0057.1	MA0057.1	0.118
MA0058.1	MA0058.1	0.296
MA0059.1	MA0059.1	0.314
MA0060.1	MA0060.1	1.41646e-12
MA0061.1	MA0061.1	0.401
MA0062.2	MA0062.2	2.7026e-8
MA0065.2	MA0065.2	0.954
MA0066.1	MA0066.1	0.591
MA0067.1	MA0067.1	0.0237
MA0068.1	MA0068.1	0.507
MA0069.1	MA0069.1	0.0654
MA0070.1	MA0070.1	0.775
MA0071.1	MA0071.1	0.438
MA0072.1	MA0072.1	0.467
MA0073.1	MA0073.1	0.784
MA0074.1	MA0074.1	0.0236
MA0076.1	MA0076.1	0.0011
MA0077.1	MA0077.1	0.362
MA0078.1	MA0078.1	0.824
MA0079.2	MA0079.2	0.34
MA0080.2	MA0080.2	1.89086e-9
MA0081.1	MA0081.1	0.00291
MA0083.1	MA0083.1	0.0423
MA0084.1	MA0084.1	0.369
MA0087.1	MA0087.1	0.36
MA0088.1	MA0088.1	0.826
MA0090.1	MA0090.1	0.0111
MA0091.1	MA0091.1	0.00132
MA0092.1	MA0092.1	0.875
MA0093.1	MA0093.1	0.366
MA0099.2	MA0099.2	5.14826e-6
MA0100.1	MA0100.1	0.039
MA0101.1	MA0101.1	0.0402
MA0102.2	MA0102.2	0.832
MA0103.1	MA0103.1	0.073
MA0104.2	MA0104.2	0.0235
MA0105.1	MA0105.1	0.538
MA0106.1	MA0106.1	0.0468
MA0107.1	MA0107.1	0.0573
MA0108.2	MA0108.2	0.894
MA0111.1	MA0111.1	0.321
MA0112.2	MA0112.2	0.0873
MA0113.1	MA0113.1	0.735
MA0114.1	MA0114.1	0.833
MA0115.1	MA0115.1	0.16
MA0116.1	MA0116.1	0.393
MA0117.1	MA0117.1	0.185
MA0119.1	MA0119.1	0.472
MA0122.1	MA0122.1	0.227
MA0124.1	MA0124.1	0.185
MA0125.1	MA0125.1	0.64
MA0131.1	MA0131.1	0.162
MA0135.1	MA0135.1	0.373
MA0136.1	MA0136.1	9.54426e-15
MA0137.2	MA0137.2	0.342
MA0138.2	MA0138.2	0.446
MA0139.1	MA0139.1	0.821
MA0140.1	MA0140.1	0.282
MA0141.1	MA0141.1	0.544
MA0142.1	MA0142.1	0.0217
MA0143.1	MA0143.1	0.314
MA0144.1	MA0144.1	0.967
MA0145.1	MA0145.1	0.412
MA0146.1	MA0146.1	0.0996
MA0147.1	MA0147.1	0.0179
MA0148.1	MA0148.1	0.28
MA0149.1	MA0149.1	0.257
MA0150.1	MA0150.1	0.0202
MA0152.1	MA0152.1	0.454
MA0153.1	MA0153.1	0.128
MA0154.1	MA0154.1	0.942
MA0155.1	MA0155.1	0.0668
MA0156.1	MA0156.1	8.89612e-12
MA0157.1	MA0157.1	0.323
MA0159.1	MA0159.1	0.98
MA0160.1	MA0160.1	0.476
MA0162.1	MA0162.1	0.17
MA0163.1	MA0163.1	0.192
MA0164.1	MA0164.1	0.559
MA0258.1	MA0258.1	0.562
MA0259.1	MA0259.1	0.0895

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12015

Novel motif	Logo	P-value
1	1	0.35
10	10	0.464
100	100	0.294
101	101	0.496
102	102	0.274
103	103	0.772
104	104	0.841
105	105	0.151
106	106	0.409
107	107	0.0655
108	108	0.0804
109	109	0.795
11	11	0.928
110	110	0.687
111	111	0.643
112	112	0.457
113	113	0.661
114	114	0.673
115	115	0.00543
116	116	0.0788
117	117	0.697
118	118	0.675
119	119	0.56
12	12	0.44
120	120	0.19
121	121	0.249
122	122	0.0227
123	123	0.0214
124	124	0.396
125	125	0.784
126	126	0.909
127	127	0.859
128	128	0.238
129	129	0.189
13	13	0.493
130	130	0.909
131	131	0.274
132	132	0.133
133	133	0.453
134	134	0.432
135	135	0.625
136	136	0.162
137	137	0.0985
138	138	0.39
139	139	0.544
14	14	0.364
140	140	0.99
141	141	0.12
142	142	0.645
143	143	0.925
144	144	0.206
145	145	0.826
146	146	0.691
147	147	0.337
148	148	0.534
149	149	0.0657
15	15	0.22
150	150	0.402
151	151	0.505
152	152	0.00774
153	153	0.307
154	154	0.0985
155	155	0.0175
156	156	0.476
157	157	0.92
158	158	0.0248
159	159	0.613
16	16	0.136
160	160	0.873
161	161	0.798
162	162	0.215
163	163	0.796
164	164	0.0502
165	165	0.414
166	166	0.0458
167	167	0.388
168	168	0.845
169	169	0.0693
17	17	0.862
18	18	0.576
19	19	0.0153
2	2	0.136
20	20	0.48
21	21	0.32
22	22	0.155
23	23	0.563
24	24	0.579
25	25	0.0557
26	26	0.805
27	27	0.49
28	28	0.0894
29	29	0.568
3	3	0.862
30	30	0.468
31	31	0.391
32	32	6.72895e-12
33	33	0.518
34	34	0.574
35	35	0.723
36	36	0.0257
37	37	0.0922
38	38	0.315
39	39	0.403
4	4	0.151
40	40	0.614
41	41	0.0789
42	42	0.268
43	43	0.73
44	44	0.0441
45	45	0.727
46	46	0.815
47	47	0.6
48	48	0.368
49	49	0.242
5	5	0.395
50	50	0.524
51	51	0.634
52	52	0.573
53	53	0.217
54	54	0.57
55	55	0.168
56	56	0.762
57	57	0.42
58	58	0.147
59	59	0.162
6	6	0.633
60	60	0.745
61	61	0.693
62	62	0.399
63	63	0.43
64	64	0.482
65	65	0.551
66	66	0.0927
67	67	0.78
68	68	0.818
69	69	0.448
7	7	0.0592
70	70	0.796
71	71	0.996
72	72	0.569
73	73	0.00895
74	74	0.331
75	75	0.872
76	76	0.999
77	77	0.0961
78	78	0.189
79	79	1.93619e-4
8	8	0.314
80	80	0.149
81	81	0.807
82	82	0.272
83	83	0.0416
84	84	0.726
85	85	0.186
86	86	0.427
87	87	0.108
88	88	0.488
89	89	0.132
9	9	0.812
90	90	0.478
91	91	0.85
92	92	0.644
93	93	0.193
94	94	0.979
95	95	0.3
96	96	0.473
97	97	0.862
98	98	0.313
99	99	0.00617

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12015

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000277 human prostate stromal cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002622 (prostate stromal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0002384 (connective tissue)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000277 (human prostate stromal cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002367,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0005156,UBERON:0000077,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0000161,UBERON:0000162,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003102,UBERON:0003929,UBERON:0003104,UBERON:0010147,UBERON:0005256,UBERON:0000925,UBERON:0006598,UBERON:0009846,UBERON:0004185,UBERON:0005157,UBERON:0003937,UBERON:0005399,UBERON:0002532,UBERON:0003353,UBERON:0004902,UBERON:0001555,UBERON:0001008,UBERON:0003101,UBERON:0004122,UBERON:0001353,UBERON:0000163,UBERON:0000079,UBERON:0007026,UBERON:0006866,UBERON:0009142,UBERON:0001046,UBERON:0000164,UBERON:0003064,UBERON:0006595,UBERON:0006603,UBERON:0000931,UBERON:0003820,UBERON:0009847
+|DRA_sample_Accession=CAGE@SAMD00005095
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000499,CL:0000004,CL:0000134,CL:0000255,CL:0002622
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005095
+|accession_numbers=CAGE;DRX008424;DRR009296;DRZ000721;DRZ002106;DRZ012071;DRZ013456
+|accession_numbers_RNASeq=sRNA-Seq;DRX037011;DRR041377;DRZ007019
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000277
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.51!318.89!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.25!216.36!FOXF1;;chr5:134369879..134369898,-!p2@PITX1!1.77!57.43!PITX1;;chr15:57511609..57511651,+!p2@TCF12!1.71!83.66!TCF12;;chr5:134369905..134369972,-!p1@PITX1!1.62!61.37!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.58!183.97!CREB3L1;;chr15:42749722..42749739,-!p2@ZFP106!1.57!63.86!ZFP106;;chr5:92918919..92918942,+!p1@NR2F1!1.45!116.31!NR2F1;;chr11:46299539..46299620,+!p2@CREB3L1!1.43!42.88!CREB3L1;;chr5:92918956..92918969,+!p4@NR2F1!1.42!27.54!NR2F1;;chr2:19558373..19558392,-!p1@OSR1!1.34!55.99!OSR1;;chr5:92919100..92919135,+!p3@NR2F1!1.34!25.18!NR2F1;;chr7:27224842..27224872,-!p1@HOXA11!1.30!19.01!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.28!18.10!HOXA11;;chr6:1389789..1389821,+!p1@FOXF2!1.26!23.73!FOXF2;;chr3:25470156..25470227,+!p2@RARB!1.24!16.26!RARB;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.47!HOXA3;;chr10:28034739..28034756,-!p1@MKX!1.22!15.47!MKX;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.81!TWIST2;;chr14:61116183..61116208,-!p1@SIX1!1.19!54.81!SIX1;;chr7:27239703..27239715,-!p1@HOXA13!1.18!14.16!HOXA13;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.75!TBX2;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.49!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.16!14.55!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.85!PRRX1;;chr14:33403881..33403924,+!p1@NPAS3!1.09!11.41!NPAS3;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.45!HIC1;;chr2:239756739..239756755,+!p2@TWIST2!1.05!17.44!TWIST2;;chr5:92919068..92919082,+!p5@NR2F1!1.04!11.93!NR2F1;;chr10:63809106..63809127,+!p1@ARID5B!1.01!128.37!ARID5B;;chr3:141121847..141121868,+!p5@ZBTB38!1.00!13.90!ZBTB38;;chr3:128212033..128212051,-!p1@GATA2!1.00!9.05!GATA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.99!9.31!GLIS1;;chr3:128206762..128206781,-!p2@GATA2!0.98!55.20!GATA2;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.33!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!0.97!10.88!PRRX2;;chr5:92919452..92919496,+!p11@NR2F1!0.97!8.39!NR2F1;;chr7:27239740..27239759,-!p2@HOXA13!0.97!8.39!HOXA13;;chr15:57511589..57511608,+!p4@TCF12!0.97!8.26!TCF12;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.75!TBX2;;chr8:99956662..99956684,+!p1@OSR2!0.94!12.06!OSR2;;chr11:46333934..46333963,+!p5@CREB3L1!0.94!7.74!CREB3L1;;chr7:28220198..28220269,-!p2@JAZF1!0.93!69.36!JAZF1;;chr10:63853436..63853442,+!p4@ARID5B!0.93!41.83!ARID5B;;chr5:321810..321877,+!p1@AHRR!0.92!24.39!AHRR;;chr1:170633262..170633285,+!p3@PRRX1!0.92!8.39!PRRX1;;chr2:66662281..66662308,+!p1@MEIS1!0.90!24.78!MEIS1;;chr2:66662895..66662907,+!p3@MEIS1!0.90!8.79!MEIS1;;chr11:65687362..65687436,+!p3@DRAP1!0.89!32.52!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.36!ZFPM2;;chr3:25469724..25469773,+!p1@RARB!0.89!9.97!RARB;;chr9:132427883..132427951,+!p2@PRRX2!0.88!6.56!PRRX2;;chr19:45260775..45260838,+!p5@BCL3!0.86!8.26!BCL3;;chr11:46299443..46299459,+!p4@CREB3L1!0.86!6.16!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.16!HOXA9;;chr17:1958388..1958404,+!p1@HIC1!0.84!39.86!HIC1;;chr9:77112244..77112262,+!p1@RORB!0.84!6.69!RORB;;chr15:67418177..67418204,+!p9@SMAD3!0.84!5.90!SMAD3;;chr14:24837368..24837401,+!p1@NFATC4!0.82!13.90!NFATC4;;chr2:46524537..46524553,+!p1@EPAS1!0.80!572.75!EPAS1;;chr5:92919312..92919334,+!p13@NR2F1!0.80!5.38!NR2F1;;chr5:50679228..50679288,+!p1@ISL1!0.80!5.24!ISL1;;chr10:63809013..63809041,+!p3@ARID5B!0.79!30.81!ARID5B;;chr10:131762504..131762555,-!p1@EBF3!0.79!5.11!EBF3;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.42!TBX3;;chr15:37392724..37392757,-!p1@MEIS2!0.78!25.31!MEIS2;;chr9:128509663..128509715,+!p1@PBX3!0.78!18.62!PBX3;;chr18:19749541..19749557,+!p1@GATA6!0.78!17.18!GATA6;;chr3:12329397..12329433,+!p2@PPARG!0.78!12.06!PPARG;;chr8:72756267..72756296,-!p4@MSC!0.78!7.61!MSC;;chr1:170632959..170632987,+!p4@PRRX1!0.78!5.64!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.78!4.98!HOXA10;;chr5:92920456..92920488,+!p9@NR2F1!0.77!5.77!NR2F1;;chr17:59477197..59477212,+!p2@TBX2!0.76!8.52!TBX2;;chr8:72756667..72756736,-!p2@MSC!0.76!7.74!MSC;;chr7:27196267..27196311,-!p1@HOXA7!0.76!4.72!HOXA7;;chr2:46612891..46612907,+!p10@EPAS1!0.76!4.72!EPAS1;;chr2:66662396..66662407,+!p4@MEIS1!0.76!4.72!MEIS1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.59!SIX2;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.45!ZMAT3;;chr10:94449703..94449718,+!p1@HHEX!0.74!19.28!HHEX;;chr15:37390850..37390909,-!p3@MEIS2!0.74!9.31!MEIS2;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.69!NR2F2;;chr10:63809090..63809097,+!p7@ARID5B!0.74!6.56!ARID5B;;chr2:46602901..46602926,+!p7@EPAS1!0.74!6.29!EPAS1;;chr2:46602879..46602899,+!p8@EPAS1!0.74!5.64!EPAS1;;chr3:141150883..141150961,+!p6@ZBTB38!0.74!4.46!ZBTB38;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.74!4.46!SEBOX;;chr8:72756063..72756125,-!p1@MSC!0.73!9.44!MSC;;chr8:72756213..72756243,-!p5@MSC!0.73!5.77!MSC;;chr7:27205106..27205134,-!p2@HOXA9!0.73!4.33!HOXA9;;chr5:92918894..92918912,+!p2@NR2F1!0.72!15.47!NR2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.72!8.26!N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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11405-118E1
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000277
+|is_a=EFO:0002091;;FF:0000277
+|is_obsolete=
+|library_id=CNhs12015
+|library_id_phase_based=2:CNhs12015
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11405
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CGATGT.11405
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11405
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CGATGT.11405
 |name=Prostate Stromal Cells, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12015,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10003,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=118
 |rna_catalog_number=N/A
@@ Line 54: / Line 80: @@
 |rna_rin=10
 |rna_sample_type=total RNA
-|rna_tube_id=118E1
+|rna_tube_id=1.18E+03
 |rna_weight_ug=59.6
+|rnaseq_library_id=SRhi10003.CGATGT
 |sample_age=40
+|sample_category=primary cells
 |sample_cell_catalog=CC-2508
 |sample_cell_line=
@@ Line 69: / Line 97: @@
 |sample_ethnicity=C
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.1991009262904e-208!GO:0005737;cytoplasm;1.50114252005936e-194!GO:0043226;organelle;3.71709490396108e-152!GO:0043229;intracellular organelle;7.80601982936785e-152!GO:0043231;intracellular membrane-bound organelle;2.29717140268728e-151!GO:0043227;membrane-bound organelle;3.99314650093411e-151!GO:0044444;cytoplasmic part;1.69980447611726e-144!GO:0044422;organelle part;4.56925227745205e-111!GO:0044446;intracellular organelle part;1.15623613959841e-109!GO:0032991;macromolecular complex;1.27037827881921e-76!GO:0030529;ribonucleoprotein complex;2.42858085303275e-74!GO:0044238;primary metabolic process;1.35615575347734e-72!GO:0005515;protein binding;1.54491965511139e-72!GO:0044237;cellular metabolic process;8.75289679207064e-72!GO:0005739;mitochondrion;1.8821049679575e-63!GO:0043170;macromolecule metabolic process;1.23070492503564e-62!GO:0043233;organelle lumen;2.10521577164094e-56!GO:0031974;membrane-enclosed lumen;2.10521577164094e-56!GO:0003723;RNA binding;9.05001915075012e-54!GO:0031090;organelle membrane;3.32686955274593e-53!GO:0019538;protein metabolic process;4.2908958200152e-52!GO:0005840;ribosome;8.64928564047787e-50!GO:0044428;nuclear part;1.9741876755736e-49!GO:0044260;cellular macromolecule metabolic process;1.15918490286028e-45!GO:0015031;protein transport;3.61703477812279e-45!GO:0006412;translation;8.18648346083643e-45!GO:0044267;cellular protein metabolic process;8.47283156070535e-45!GO:0003735;structural constituent of ribosome;5.82312973010275e-44!GO:0033036;macromolecule localization;8.70915863087549e-43!GO:0044429;mitochondrial part;1.08420088559769e-42!GO:0005634;nucleus;5.36271077950434e-42!GO:0009058;biosynthetic process;1.04437519726168e-41!GO:0045184;establishment of protein localization;1.76725598995646e-41!GO:0008104;protein localization;1.44873091753187e-40!GO:0005829;cytosol;1.49969094559778e-40!GO:0016043;cellular component organization and biogenesis;5.30557963699718e-40!GO:0033279;ribosomal subunit;1.92117510286224e-38!GO:0044249;cellular biosynthetic process;1.08689182379502e-37!GO:0043234;protein complex;5.62871861930023e-37!GO:0031967;organelle envelope;5.65967334977492e-37!GO:0031975;envelope;1.40156920443645e-36!GO:0009059;macromolecule biosynthetic process;1.77116830665332e-36!GO:0006396;RNA processing;7.17229335538479e-34!GO:0046907;intracellular transport;8.80890714385196e-32!GO:0031981;nuclear lumen;5.00047468659505e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.90269341233377e-29!GO:0005740;mitochondrial envelope;7.39223096707582e-29!GO:0016071;mRNA metabolic process;1.13662080811569e-28!GO:0043283;biopolymer metabolic process;6.52373919621156e-28!GO:0010467;gene expression;1.01431174518311e-27!GO:0006886;intracellular protein transport;1.26089066429315e-27!GO:0031966;mitochondrial membrane;1.82266990230102e-27!GO:0008380;RNA splicing;9.3926361719513e-27!GO:0019866;organelle inner membrane;7.06436030442955e-26!GO:0065003;macromolecular complex assembly;8.20946045342218e-26!GO:0005783;endoplasmic reticulum;6.73453023839455e-25!GO:0005743;mitochondrial inner membrane;1.11589977206171e-24!GO:0006397;mRNA processing;3.96909205047112e-24!GO:0022607;cellular component assembly;7.99330322191663e-24!GO:0044445;cytosolic part;3.72924547346741e-23!GO:0006119;oxidative phosphorylation;2.69875368701217e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.92185202457689e-22!GO:0012505;endomembrane system;1.03930601235433e-21!GO:0048770;pigment granule;9.02750923799344e-21!GO:0042470;melanosome;9.02750923799344e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.47758757702018e-20!GO:0006996;organelle organization and biogenesis;4.06061163250219e-20!GO:0051649;establishment of cellular localization;6.61888374936209e-20!GO:0051641;cellular localization;8.32490195275003e-20!GO:0015934;large ribosomal subunit;8.60061359626197e-20!GO:0015935;small ribosomal subunit;1.10683640817541e-19!GO:0006457;protein folding;1.63594172772948e-19!GO:0044455;mitochondrial membrane part;2.53292884780442e-19!GO:0005654;nucleoplasm;5.35150333884639e-19!GO:0044432;endoplasmic reticulum part;8.56428025562487e-19!GO:0005681;spliceosome;1.10185537311138e-18!GO:0005794;Golgi apparatus;7.07561978555711e-18!GO:0051186;cofactor metabolic process;1.55686835377444e-17!GO:0043228;non-membrane-bound organelle;2.49124738857478e-17!GO:0043232;intracellular non-membrane-bound organelle;2.49124738857478e-17!GO:0005746;mitochondrial respiratory chain;6.40034395747945e-17!GO:0031980;mitochondrial lumen;1.3059477364996e-16!GO:0005759;mitochondrial matrix;1.3059477364996e-16!GO:0006512;ubiquitin cycle;2.43014128036224e-16!GO:0044451;nucleoplasm part;2.69566962667778e-16!GO:0008134;transcription factor binding;2.73605629214039e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.76028940115563e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.10549557917329e-16!GO:0016874;ligase activity;1.16482893968459e-15!GO:0022618;protein-RNA complex assembly;1.40797729249423e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.81865540782247e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.76558771840925e-15!GO:0048193;Golgi vesicle transport;4.30121687321387e-15!GO:0019941;modification-dependent protein catabolic process;7.85178471877083e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.85178471877083e-15!GO:0016192;vesicle-mediated transport;8.45019043280929e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.53666089416187e-15!GO:0003954;NADH dehydrogenase activity;8.53666089416187e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.53666089416187e-15!GO:0044257;cellular protein catabolic process;9.02328917759394e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.50977041353008e-15!GO:0043285;biopolymer catabolic process;1.10422480820588e-14!GO:0044265;cellular macromolecule catabolic process;1.49583660349582e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.64164961070808e-14!GO:0016462;pyrophosphatase activity;1.69369140172522e-14!GO:0000166;nucleotide binding;2.23395793908779e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;2.40467886099487e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.66536201620816e-14!GO:0006732;coenzyme metabolic process;4.44696586747081e-14!GO:0017111;nucleoside-triphosphatase activity;5.64271299132825e-14!GO:0030163;protein catabolic process;5.99512482898607e-14!GO:0008135;translation factor activity, nucleic acid binding;6.26885108152331e-14!GO:0005761;mitochondrial ribosome;1.27452204197996e-13!GO:0000313;organellar ribosome;1.27452204197996e-13!GO:0006605;protein targeting;1.49660951550812e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.81352305729938e-13!GO:0009057;macromolecule catabolic process;2.73006801587351e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.37721247014035e-13!GO:0044248;cellular catabolic process;3.62085842766961e-13!GO:0051082;unfolded protein binding;3.90099636139029e-13!GO:0009055;electron carrier activity;3.92161891431005e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.22689007628075e-13!GO:0042773;ATP synthesis coupled electron transport;4.22689007628075e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.16206846403739e-13!GO:0045271;respiratory chain complex I;6.16206846403739e-13!GO:0005747;mitochondrial respiratory chain complex I;6.16206846403739e-13!GO:0005789;endoplasmic reticulum membrane;7.61412838285511e-13!GO:0005793;ER-Golgi intermediate compartment;1.0790667546481e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.70435681377327e-12!GO:0043412;biopolymer modification;2.94878441170174e-12!GO:0005730;nucleolus;1.00045241626396e-11!GO:0006464;protein modification process;1.15797028745233e-11!GO:0012501;programmed cell death;1.79985429470603e-11!GO:0006915;apoptosis;3.83239004499776e-11!GO:0003743;translation initiation factor activity;8.93336678394154e-11!GO:0003712;transcription cofactor activity;9.60538879221691e-11!GO:0048523;negative regulation of cellular process;2.48996277528842e-10!GO:0016491;oxidoreductase activity;3.25802300919561e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.82978811025338e-10!GO:0006413;translational initiation;3.98606649063763e-10!GO:0032553;ribonucleotide binding;4.18890701446854e-10!GO:0032555;purine ribonucleotide binding;4.18890701446854e-10!GO:0008219;cell death;4.22344123412213e-10!GO:0016265;death;4.22344123412213e-10!GO:0019787;small conjugating protein ligase activity;5.22895440592522e-10!GO:0008639;small protein conjugating enzyme activity;5.25538890437805e-10!GO:0043687;post-translational protein modification;6.08486109022553e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.64512846082812e-10!GO:0000375;RNA splicing, via transesterification reactions;6.64512846082812e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.64512846082812e-10!GO:0017076;purine nucleotide binding;6.64699774606944e-10!GO:0004842;ubiquitin-protein ligase activity;1.06487464479145e-09!GO:0006259;DNA metabolic process;1.13656661844826e-09!GO:0003676;nucleic acid binding;1.23673536426152e-09!GO:0008565;protein transporter activity;1.96121640789635e-09!GO:0005768;endosome;2.57660090545325e-09!GO:0016070;RNA metabolic process;2.74455675485356e-09!GO:0005635;nuclear envelope;2.86149946576617e-09!GO:0009259;ribonucleotide metabolic process;3.00090697487458e-09!GO:0009150;purine ribonucleotide metabolic process;3.24213912410986e-09!GO:0006163;purine nucleotide metabolic process;4.32687494905553e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.45072634560747e-09!GO:0006446;regulation of translational initiation;4.51945537916258e-09!GO:0005773;vacuole;5.58768035683436e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.78561679625936e-09!GO:0016881;acid-amino acid ligase activity;7.48645620797312e-09!GO:0006461;protein complex assembly;8.8039412985757e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.19732238223801e-09!GO:0003924;GTPase activity;9.2468504503287e-09!GO:0007049;cell cycle;1.01196957293665e-08!GO:0048519;negative regulation of biological process;1.21341419850318e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.24799736636311e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.24799736636311e-08!GO:0051188;cofactor biosynthetic process;1.35829222594453e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.46112306800944e-08!GO:0009060;aerobic respiration;1.66188892384626e-08!GO:0015986;ATP synthesis coupled proton transport;1.68177460853957e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.68177460853957e-08!GO:0009056;catabolic process;1.79915817575506e-08!GO:0009141;nucleoside triphosphate metabolic process;1.8767722072536e-08!GO:0005788;endoplasmic reticulum lumen;1.8776949435537e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.92430867361807e-08!GO:0006164;purine nucleotide biosynthetic process;1.97800346022657e-08!GO:0031988;membrane-bound vesicle;2.07199915249121e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.31489544457462e-08!GO:0031965;nuclear membrane;2.321331943532e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.56673353417612e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.97589007242435e-08!GO:0006913;nucleocytoplasmic transport;3.18124405744403e-08!GO:0009260;ribonucleotide biosynthetic process;3.50023434961672e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.683500313085e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.683500313085e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.0125993206703e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.0125993206703e-08!GO:0051169;nuclear transport;5.75400045461379e-08!GO:0016604;nuclear body;5.75400045461379e-08!GO:0019829;cation-transporting ATPase activity;5.84949263904983e-08!GO:0045333;cellular respiration;6.76271274001343e-08!GO:0044431;Golgi apparatus part;7.45477456498805e-08!GO:0042981;regulation of apoptosis;7.83012099961253e-08!GO:0031982;vesicle;7.84370858004407e-08!GO:0042254;ribosome biogenesis and assembly;8.16793293258574e-08!GO:0043067;regulation of programmed cell death;8.37359871961923e-08!GO:0031410;cytoplasmic vesicle;8.77685875084856e-08!GO:0046034;ATP metabolic process;9.27737137850947e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.14982324049357e-07!GO:0000323;lytic vacuole;1.15245419560484e-07!GO:0005764;lysosome;1.15245419560484e-07!GO:0043069;negative regulation of programmed cell death;1.61324246825587e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.8308223681959e-07!GO:0030120;vesicle coat;1.86451410156495e-07!GO:0030662;coated vesicle membrane;1.86451410156495e-07!GO:0006366;transcription from RNA polymerase II promoter;2.27142403054411e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.33460333470039e-07!GO:0043066;negative regulation of apoptosis;2.57999257838347e-07!GO:0048475;coated membrane;2.63560108689515e-07!GO:0030117;membrane coat;2.63560108689515e-07!GO:0017038;protein import;2.66391984356616e-07!GO:0005770;late endosome;3.1582224881304e-07!GO:0006754;ATP biosynthetic process;3.24838323066281e-07!GO:0006753;nucleoside phosphate metabolic process;3.24838323066281e-07!GO:0051246;regulation of protein metabolic process;3.5719340360041e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.53760854805203e-07!GO:0009117;nucleotide metabolic process;4.69862587537438e-07!GO:0044453;nuclear membrane part;5.0231489979434e-07!GO:0006099;tricarboxylic acid cycle;5.27773354368628e-07!GO:0046356;acetyl-CoA catabolic process;5.27773354368628e-07!GO:0051187;cofactor catabolic process;5.44743568636614e-07!GO:0006916;anti-apoptosis;7.01450451363227e-07!GO:0005525;GTP binding;7.26494545036318e-07!GO:0006399;tRNA metabolic process;7.5319580528372e-07!GO:0009108;coenzyme biosynthetic process;7.70935342290606e-07!GO:0007005;mitochondrion organization and biogenesis;9.57222935023813e-07!GO:0044440;endosomal part;1.04697694858422e-06!GO:0010008;endosome membrane;1.04697694858422e-06!GO:0050794;regulation of cellular process;1.16764234704607e-06!GO:0009109;coenzyme catabolic process;1.40584960813364e-06!GO:0032559;adenyl ribonucleotide binding;1.43462715683082e-06!GO:0005524;ATP binding;1.58187824116775e-06!GO:0031252;leading edge;1.6181641577738e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.62103714300673e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.62103714300673e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.62103714300673e-06!GO:0004298;threonine endopeptidase activity;1.7025192047211e-06!GO:0051726;regulation of cell cycle;1.7182810066553e-06!GO:0006084;acetyl-CoA metabolic process;1.85611530027856e-06!GO:0000074;regulation of progression through cell cycle;2.00026266488244e-06!GO:0032446;protein modification by small protein conjugation;2.09786759478422e-06!GO:0008654;phospholipid biosynthetic process;2.32401735114129e-06!GO:0030554;adenyl nucleotide binding;2.46483619723491e-06!GO:0006974;response to DNA damage stimulus;2.58609685000618e-06!GO:0016607;nuclear speck;2.59970409795261e-06!GO:0005798;Golgi-associated vesicle;2.83911616611312e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.16372135770683e-06!GO:0043038;amino acid activation;3.16630927206311e-06!GO:0006418;tRNA aminoacylation for protein translation;3.16630927206311e-06!GO:0043039;tRNA aminoacylation;3.16630927206311e-06!GO:0016567;protein ubiquitination;3.25489486445797e-06!GO:0006091;generation of precursor metabolites and energy;3.43357131900458e-06!GO:0045786;negative regulation of progression through cell cycle;3.49965685019521e-06!GO:0008361;regulation of cell size;4.12020258494809e-06!GO:0032561;guanyl ribonucleotide binding;4.30724256138384e-06!GO:0019001;guanyl nucleotide binding;4.30724256138384e-06!GO:0065002;intracellular protein transport across a membrane;4.65799212306118e-06!GO:0045454;cell redox homeostasis;4.70893828484879e-06!GO:0045259;proton-transporting ATP synthase complex;4.71863685000392e-06!GO:0003714;transcription corepressor activity;4.71863685000392e-06!GO:0022402;cell cycle process;5.54013577701989e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.97596397385798e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.98050336623049e-06!GO:0000151;ubiquitin ligase complex;6.04260717388813e-06!GO:0016853;isomerase activity;6.40851528683068e-06!GO:0006752;group transfer coenzyme metabolic process;6.90062590195482e-06!GO:0016049;cell growth;7.03654197357408e-06!GO:0042623;ATPase activity, coupled;8.62521225088353e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.26338235380282e-06!GO:0000139;Golgi membrane;1.21519785682721e-05!GO:0016564;transcription repressor activity;1.33652184282407e-05!GO:0005667;transcription factor complex;1.91484202310825e-05!GO:0003713;transcription coactivator activity;1.97965843167439e-05!GO:0016887;ATPase activity;2.00024666831345e-05!GO:0005762;mitochondrial large ribosomal subunit;2.01512771729769e-05!GO:0000315;organellar large ribosomal subunit;2.01512771729769e-05!GO:0005643;nuclear pore;2.58707148000664e-05!GO:0000245;spliceosome assembly;2.65561888714155e-05!GO:0006793;phosphorus metabolic process;2.81109018821854e-05!GO:0006796;phosphate metabolic process;2.81109018821854e-05!GO:0006613;cotranslational protein targeting to membrane;2.87526165673274e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;3.18896412154119e-05!GO:0031968;organelle outer membrane;3.37221650668855e-05!GO:0050789;regulation of biological process;3.39435295063982e-05!GO:0019867;outer membrane;3.40235879805576e-05!GO:0031324;negative regulation of cellular metabolic process;3.47698523397473e-05!GO:0001558;regulation of cell growth;3.65050277513101e-05!GO:0051789;response to protein stimulus;3.88747827521938e-05!GO:0006986;response to unfolded protein;3.88747827521938e-05!GO:0051170;nuclear import;4.09860454007169e-05!GO:0016310;phosphorylation;4.55016771130005e-05!GO:0019843;rRNA binding;4.96232737035721e-05!GO:0007243;protein kinase cascade;5.04958139653317e-05!GO:0005905;coated pit;5.04958139653317e-05!GO:0006606;protein import into nucleus;5.68135203255981e-05!GO:0030133;transport vesicle;6.19211140974786e-05!GO:0003697;single-stranded DNA binding;6.20440501174402e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.66486447385662e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.70928519962152e-05!GO:0016859;cis-trans isomerase activity;6.81601251520299e-05!GO:0008026;ATP-dependent helicase activity;6.97004009814868e-05!GO:0009719;response to endogenous stimulus;7.40164246851734e-05!GO:0016787;hydrolase activity;7.48160427135997e-05!GO:0005769;early endosome;7.90396722201871e-05!GO:0006323;DNA packaging;8.23622337711712e-05!GO:0030867;rough endoplasmic reticulum membrane;8.26354019281584e-05!GO:0005791;rough endoplasmic reticulum;8.58027357658939e-05!GO:0006364;rRNA processing;8.71318988150942e-05!GO:0005048;signal sequence binding;8.71318988150942e-05!GO:0004386;helicase activity;9.2487143958002e-05!GO:0016563;transcription activator activity;9.3597436533132e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.36772078487331e-05!GO:0005741;mitochondrial outer membrane;0.000111287484459661!GO:0065004;protein-DNA complex assembly;0.000111811412312468!GO:0030036;actin cytoskeleton organization and biogenesis;0.000136338813141546!GO:0016072;rRNA metabolic process;0.000143997947737773!GO:0043566;structure-specific DNA binding;0.000166356199692188!GO:0006612;protein targeting to membrane;0.000173412900337312!GO:0046930;pore complex;0.000184296242370454!GO:0016740;transferase activity;0.000205998195722063!GO:0008610;lipid biosynthetic process;0.000216502347068102!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000216972773502376!GO:0009892;negative regulation of metabolic process;0.000228494155143802!GO:0043623;cellular protein complex assembly;0.000237423933239886!GO:0006281;DNA repair;0.000246680392635084!GO:0007264;small GTPase mediated signal transduction;0.00026627978296897!GO:0043021;ribonucleoprotein binding;0.000308630111734371!GO:0048522;positive regulation of cellular process;0.000382505792259276!GO:0008250;oligosaccharyl transferase complex;0.000396072370627649!GO:0046474;glycerophospholipid biosynthetic process;0.000398300175307785!GO:0050657;nucleic acid transport;0.000407682838826525!GO:0051236;establishment of RNA localization;0.000407682838826525!GO:0050658;RNA transport;0.000407682838826525!GO:0006403;RNA localization;0.000416381962419755!GO:0006979;response to oxidative stress;0.000418752060872382!GO:0000314;organellar small ribosomal subunit;0.0004349744362569!GO:0005763;mitochondrial small ribosomal subunit;0.0004349744362569!GO:0046467;membrane lipid biosynthetic process;0.000440581112019808!GO:0030663;COPI coated vesicle membrane;0.000465605922794758!GO:0030126;COPI vesicle coat;0.000465605922794758!GO:0016568;chromatin modification;0.000466878831680275!GO:0005885;Arp2/3 protein complex;0.000468372026560446!GO:0006414;translational elongation;0.000482960436810378!GO:0004576;oligosaccharyl transferase activity;0.000493999201652514!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000516444618422343!GO:0016481;negative regulation of transcription;0.000625986341546216!GO:0044262;cellular carbohydrate metabolic process;0.000637875300835441!GO:0003724;RNA helicase activity;0.000641910022692103!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000673243040376679!GO:0000278;mitotic cell cycle;0.000709895599298183!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000742995246049298!GO:0051276;chromosome organization and biogenesis;0.000744459502263544!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0007619212136184!GO:0016126;sterol biosynthetic process;0.000849772311670761!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000873486299963247!GO:0043284;biopolymer biosynthetic process;0.000885273708587287!GO:0009165;nucleotide biosynthetic process;0.000906744266383889!GO:0051920;peroxiredoxin activity;0.000928161339363462!GO:0009967;positive regulation of signal transduction;0.000939802656813625!GO:0018196;peptidyl-asparagine modification;0.000955314726189001!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000955314726189001!GO:0030029;actin filament-based process;0.00104495312332585!GO:0030137;COPI-coated vesicle;0.00111778921685527!GO:0040008;regulation of growth;0.00111988836930153!GO:0031902;late endosome membrane;0.00115018667108008!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00121592348570939!GO:0030176;integral to endoplasmic reticulum membrane;0.00126321289761214!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0012635206814427!GO:0030027;lamellipodium;0.00128754157404562!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00130056087731861!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00130056087731861!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00130056087731861!GO:0051427;hormone receptor binding;0.00135991905219495!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00139178054797504!GO:0016779;nucleotidyltransferase activity;0.00139413168734749!GO:0016044;membrane organization and biogenesis;0.00140975608381172!GO:0006650;glycerophospholipid metabolic process;0.00141074583246978!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00141074583246978!GO:0015399;primary active transmembrane transporter activity;0.00141074583246978!GO:0004177;aminopeptidase activity;0.00144383453850135!GO:0006626;protein targeting to mitochondrion;0.00146158583072672!GO:0006333;chromatin assembly or disassembly;0.00154446125350043!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00164577247963839!GO:0006891;intra-Golgi vesicle-mediated transport;0.00167057041639566!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00178472255783735!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00180282875255286!GO:0045045;secretory pathway;0.00180282875255286!GO:0005774;vacuolar membrane;0.00182991891054817!GO:0048471;perinuclear region of cytoplasm;0.00188762504131116!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00189323289745006!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00189323289745006!GO:0007010;cytoskeleton organization and biogenesis;0.00189954654676005!GO:0030659;cytoplasmic vesicle membrane;0.00199817669981703!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00200905831822881!GO:0001726;ruffle;0.00213524327462153!GO:0019899;enzyme binding;0.00226037553824206!GO:0035257;nuclear hormone receptor binding;0.00247591946170954!GO:0030132;clathrin coat of coated pit;0.00252261704106006!GO:0043488;regulation of mRNA stability;0.00259827802217714!GO:0043487;regulation of RNA stability;0.00259827802217714!GO:0022890;inorganic cation transmembrane transporter activity;0.00267518670274568!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00268485897404351!GO:0065009;regulation of a molecular function;0.00270543692203675!GO:0043681;protein import into mitochondrion;0.00283251562330073!GO:0051287;NAD binding;0.00296616976095899!GO:0046489;phosphoinositide biosynthetic process;0.00307833306221283!GO:0015630;microtubule cytoskeleton;0.00322358311781862!GO:0003729;mRNA binding;0.00337547638135209!GO:0042802;identical protein binding;0.00338142270700025!GO:0006839;mitochondrial transport;0.00344409327846135!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00345594680898216!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00345594680898216!GO:0015002;heme-copper terminal oxidase activity;0.00345594680898216!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00345594680898216!GO:0004129;cytochrome-c oxidase activity;0.00345594680898216!GO:0015992;proton transport;0.00347673016619244!GO:0016197;endosome transport;0.0035619492325009!GO:0019752;carboxylic acid metabolic process;0.00359147053756615!GO:0006082;organic acid metabolic process;0.00366407930916614!GO:0007040;lysosome organization and biogenesis;0.00371641292778036!GO:0006818;hydrogen transport;0.00374591518487333!GO:0008180;signalosome;0.00379966741600124!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00379966741600124!GO:0051128;regulation of cellular component organization and biogenesis;0.00383952229919549!GO:0003899;DNA-directed RNA polymerase activity;0.00403219336873447!GO:0051028;mRNA transport;0.00404989191372816!GO:0031543;peptidyl-proline dioxygenase activity;0.00427094033218231!GO:0031072;heat shock protein binding;0.00430500585395891!GO:0007050;cell cycle arrest;0.00434358903656035!GO:0006643;membrane lipid metabolic process;0.00435370281930026!GO:0065007;biological regulation;0.00446001517796343!GO:0048500;signal recognition particle;0.00447757677771239!GO:0005765;lysosomal membrane;0.00454760098892265!GO:0006740;NADPH regeneration;0.00470296814902979!GO:0006098;pentose-phosphate shunt;0.00470296814902979!GO:0005581;collagen;0.00514733820630391!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00517451541956562!GO:0051252;regulation of RNA metabolic process;0.00523970528062669!GO:0044433;cytoplasmic vesicle part;0.00525492490943757!GO:0045792;negative regulation of cell size;0.00531737176529368!GO:0051087;chaperone binding;0.00538008977394286!GO:0030134;ER to Golgi transport vesicle;0.00538008977394286!GO:0008186;RNA-dependent ATPase activity;0.00551121314774113!GO:0006749;glutathione metabolic process;0.00557504711477331!GO:0048518;positive regulation of biological process;0.00557811535604152!GO:0044437;vacuolar part;0.00558755780651841!GO:0017166;vinculin binding;0.00590476019853152!GO:0019798;procollagen-proline dioxygenase activity;0.00596215705591547!GO:0030308;negative regulation of cell growth;0.00597858312667083!GO:0048487;beta-tubulin binding;0.00601915060383637!GO:0048468;cell development;0.00616578635614988!GO:0006695;cholesterol biosynthetic process;0.00632345553834197!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00634396776880063!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00660748445531425!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00660748445531425!GO:0030118;clathrin coat;0.00663830549754102!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00663830549754102!GO:0006892;post-Golgi vesicle-mediated transport;0.00675885756228718!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00692219825298932!GO:0008632;apoptotic program;0.00705804114601578!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00715391979350055!GO:0030127;COPII vesicle coat;0.00760395776825897!GO:0012507;ER to Golgi transport vesicle membrane;0.00760395776825897!GO:0030658;transport vesicle membrane;0.00767253043188192!GO:0031418;L-ascorbic acid binding;0.00796887655033215!GO:0012506;vesicle membrane;0.00811924376299168!GO:0007033;vacuole organization and biogenesis;0.00835152085997978!GO:0006790;sulfur metabolic process;0.00840576618462011!GO:0051101;regulation of DNA binding;0.00846995039049746!GO:0003746;translation elongation factor activity;0.00859173206100134!GO:0006497;protein amino acid lipidation;0.00865002843275132!GO:0006260;DNA replication;0.00904452555726952!GO:0005869;dynactin complex;0.00911963637224111!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00922959341711994!GO:0045047;protein targeting to ER;0.00922959341711994!GO:0046483;heterocycle metabolic process;0.00937465895345928!GO:0016860;intramolecular oxidoreductase activity;0.00946930604542815!GO:0008047;enzyme activator activity;0.00946930604542815!GO:0006402;mRNA catabolic process;0.00967433367602737!GO:0006509;membrane protein ectodomain proteolysis;0.0101271801784281!GO:0033619;membrane protein proteolysis;0.0101271801784281!GO:0043492;ATPase activity, coupled to movement of substances;0.0101271801784281!GO:0033673;negative regulation of kinase activity;0.0101271801784281!GO:0006469;negative regulation of protein kinase activity;0.0101271801784281!GO:0045892;negative regulation of transcription, DNA-dependent;0.0103469180027351!GO:0000785;chromatin;0.0103741156207424!GO:0043433;negative regulation of transcription factor activity;0.0103786599540164!GO:0006383;transcription from RNA polymerase III promoter;0.010384540471811!GO:0008139;nuclear localization sequence binding;0.0107159704970275!GO:0006644;phospholipid metabolic process;0.0107177490801845!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0110554846216758!GO:0007006;mitochondrial membrane organization and biogenesis;0.0111053513550749!GO:0006778;porphyrin metabolic process;0.0112635027180773!GO:0033013;tetrapyrrole metabolic process;0.0112635027180773!GO:0006672;ceramide metabolic process;0.0112962095321798!GO:0050811;GABA receptor binding;0.0114429988993797!GO:0050662;coenzyme binding;0.0115173613901791!GO:0008430;selenium binding;0.0116835945097618!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.011841157681904!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0118591059969033!GO:0006352;transcription initiation;0.0119353713784742!GO:0008637;apoptotic mitochondrial changes;0.0120287234833633!GO:0051348;negative regulation of transferase activity;0.0120913117230629!GO:0005694;chromosome;0.0121223704614935!GO:0030145;manganese ion binding;0.0121867900817449!GO:0051168;nuclear export;0.0122132397320456!GO:0043022;ribosome binding;0.0124586130964757!GO:0030041;actin filament polymerization;0.0125034013040479!GO:0006769;nicotinamide metabolic process;0.0127686651021323!GO:0008092;cytoskeletal protein binding;0.0128457667321243!GO:0005813;centrosome;0.0129032848413701!GO:0042158;lipoprotein biosynthetic process;0.013101094420443!GO:0004004;ATP-dependent RNA helicase activity;0.0131106962624221!GO:0030503;regulation of cell redox homeostasis;0.0131958354674781!GO:0006595;polyamine metabolic process;0.0133411211477167!GO:0030119;AP-type membrane coat adaptor complex;0.0133421387108679!GO:0046519;sphingoid metabolic process;0.0140827852691466!GO:0006984;ER-nuclear signaling pathway;0.0141086990106914!GO:0000059;protein import into nucleus, docking;0.0146365470891141!GO:0005862;muscle thin filament tropomyosin;0.0150099396894314!GO:0006739;NADP metabolic process;0.0150153307095811!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0154964430340933!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0160425191429203!GO:0044255;cellular lipid metabolic process;0.0168976438980141!GO:0031272;regulation of pseudopodium formation;0.0168976438980141!GO:0031269;pseudopodium formation;0.0168976438980141!GO:0031344;regulation of cell projection organization and biogenesis;0.0168976438980141!GO:0031268;pseudopodium organization and biogenesis;0.0168976438980141!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0168976438980141!GO:0031274;positive regulation of pseudopodium formation;0.0168976438980141!GO:0044420;extracellular matrix part;0.0175192720743593!GO:0030521;androgen receptor signaling pathway;0.0176864818509421!GO:0000049;tRNA binding;0.0177156466114271!GO:0008629;induction of apoptosis by intracellular signals;0.0177851721343765!GO:0008312;7S RNA binding;0.0178323859955419!GO:0008154;actin polymerization and/or depolymerization;0.01804908396988!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.01804908396988!GO:0016363;nuclear matrix;0.0184038917010157!GO:0007034;vacuolar transport;0.0184879355135417!GO:0051270;regulation of cell motility;0.0189726814994376!GO:0006334;nucleosome assembly;0.0191763647233674!GO:0016251;general RNA polymerase II transcription factor activity;0.0199356888948307!GO:0016408;C-acyltransferase activity;0.0201876447386786!GO:0030660;Golgi-associated vesicle membrane;0.0202453291232651!GO:0006354;RNA elongation;0.0203355155627231!GO:0004674;protein serine/threonine kinase activity;0.0203355155627231!GO:0042168;heme metabolic process;0.0205932295580722!GO:0006767;water-soluble vitamin metabolic process;0.020706660796901!GO:0031497;chromatin assembly;0.020806908745231!GO:0003690;double-stranded DNA binding;0.020806908745231!GO:0019222;regulation of metabolic process;0.0214283301702772!GO:0031625;ubiquitin protein ligase binding;0.0214297712779412!GO:0031901;early endosome membrane;0.0217436552704213!GO:0035035;histone acetyltransferase binding;0.0217436552704213!GO:0051329;interphase of mitotic cell cycle;0.0218184934808239!GO:0030833;regulation of actin filament polymerization;0.0219318207760952!GO:0001516;prostaglandin biosynthetic process;0.022096690615126!GO:0046457;prostanoid biosynthetic process;0.022096690615126!GO:0005815;microtubule organizing center;0.0222777864509689!GO:0045926;negative regulation of growth;0.0227470391395386!GO:0004860;protein kinase inhibitor activity;0.0227470391395386!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0227470391395386!GO:0030518;steroid hormone receptor signaling pathway;0.0228669903245804!GO:0005684;U2-dependent spliceosome;0.022883733155327!GO:0000209;protein polyubiquitination;0.0231055204900403!GO:0030131;clathrin adaptor complex;0.0233025857348052!GO:0006118;electron transport;0.0233307632234523!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0238049134078797!GO:0033043;regulation of organelle organization and biogenesis;0.0238049134078797!GO:0033559;unsaturated fatty acid metabolic process;0.0238177817486738!GO:0006636;unsaturated fatty acid biosynthetic process;0.0238177817486738!GO:0031529;ruffle organization and biogenesis;0.0238595853646333!GO:0000096;sulfur amino acid metabolic process;0.0239270042235585!GO:0016272;prefoldin complex;0.0240014390944143!GO:0022406;membrane docking;0.0240387796609732!GO:0048278;vesicle docking;0.0240387796609732!GO:0005583;fibrillar collagen;0.0240387796609732!GO:0030880;RNA polymerase complex;0.0243497509496745!GO:0035258;steroid hormone receptor binding;0.0245213830406184!GO:0006506;GPI anchor biosynthetic process;0.0252771280085286!GO:0045893;positive regulation of transcription, DNA-dependent;0.0254637671627792!GO:0030984;kininogen binding;0.0262483218139327!GO:0004213;cathepsin B activity;0.0262483218139327!GO:0003711;transcription elongation regulator activity;0.0268182861909061!GO:0051539;4 iron, 4 sulfur cluster binding;0.0269801140497193!GO:0005832;chaperonin-containing T-complex;0.0279009054615376!GO:0043065;positive regulation of apoptosis;0.0279333576811835!GO:0032507;maintenance of cellular protein localization;0.0279333576811835!GO:0030384;phosphoinositide metabolic process;0.0280248141423745!GO:0051098;regulation of binding;0.0282044912902431!GO:0022408;negative regulation of cell-cell adhesion;0.0282044912902431!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0289847718406806!GO:0004784;superoxide dismutase activity;0.0289847718406806!GO:0006904;vesicle docking during exocytosis;0.0293760754894807!GO:0040011;locomotion;0.0296044189164103!GO:0031124;mRNA 3'-end processing;0.0296520722630267!GO:0015036;disulfide oxidoreductase activity;0.0298322406478281!GO:0032940;secretion by cell;0.030042608197839!GO:0032984;macromolecular complex disassembly;0.0303807652722762!GO:0044427;chromosomal part;0.0306622124285417!GO:0030032;lamellipodium biogenesis;0.030754872598655!GO:0006401;RNA catabolic process;0.0311420704781903!GO:0005099;Ras GTPase activator activity;0.0315788740629806!GO:0051540;metal cluster binding;0.0316334897913966!GO:0051536;iron-sulfur cluster binding;0.0316334897913966!GO:0006779;porphyrin biosynthetic process;0.0316690874041892!GO:0033014;tetrapyrrole biosynthetic process;0.0316690874041892!GO:0015631;tubulin binding;0.032094212332536!GO:0043068;positive regulation of programmed cell death;0.0322368492421298!GO:0006733;oxidoreduction coenzyme metabolic process;0.032237326282668!GO:0016125;sterol metabolic process;0.0325407746191948!GO:0008147;structural constituent of bone;0.0325407746191948!GO:0006897;endocytosis;0.0327647812185802!GO:0010324;membrane invagination;0.0327647812185802!GO:0045334;clathrin-coated endocytic vesicle;0.0327647812185802!GO:0045941;positive regulation of transcription;0.0327910717290175!GO:0001836;release of cytochrome c from mitochondria;0.033258637134928!GO:0005606;laminin-1 complex;0.033258637134928!GO:0005096;GTPase activator activity;0.033258637134928!GO:0005669;transcription factor TFIID complex;0.033258637134928!GO:0040012;regulation of locomotion;0.0333053748572228!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0333053748572228!GO:0007021;tubulin folding;0.0340663970605013!GO:0007030;Golgi organization and biogenesis;0.0347033338214321!GO:0000339;RNA cap binding;0.0348443303997471!GO:0008033;tRNA processing;0.0350333429409299!GO:0003756;protein disulfide isomerase activity;0.0351387815058125!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0351387815058125!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0359662881261986!GO:0000082;G1/S transition of mitotic cell cycle;0.036030261263921!GO:0007242;intracellular signaling cascade;0.0360809832843824!GO:0043624;cellular protein complex disassembly;0.0367788405223233!GO:0000030;mannosyltransferase activity;0.0371500758113218!GO:0006505;GPI anchor metabolic process;0.0373027818481202!GO:0008538;proteasome activator activity;0.0386319880675332!GO:0008320;protein transmembrane transporter activity;0.0404368250621712!GO:0001953;negative regulation of cell-matrix adhesion;0.0404368250621712!GO:0030125;clathrin vesicle coat;0.0407863017754976!GO:0030665;clathrin coated vesicle membrane;0.0407863017754976!GO:0050790;regulation of catalytic activity;0.0408526244480901!GO:0003702;RNA polymerase II transcription factor activity;0.0411293612636643!GO:0005637;nuclear inner membrane;0.0416094885762475!GO:0030508;thiol-disulfide exchange intermediate activity;0.0416094885762475!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0418613525163128!GO:0000428;DNA-directed RNA polymerase complex;0.0418613525163128!GO:0004722;protein serine/threonine phosphatase activity;0.0425633014520601!GO:0007569;cell aging;0.0425633014520601!GO:0008287;protein serine/threonine phosphatase complex;0.0428146587308896!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0431124644069173!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0432325300464773!GO:0006520;amino acid metabolic process;0.0435117971353479!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0436258034439135!GO:0008383;manganese superoxide dismutase activity;0.0441413219693763!GO:0001315;age-dependent response to reactive oxygen species;0.0441413219693763!GO:0030911;TPR domain binding;0.0445350252578958!GO:0005801;cis-Golgi network;0.0445963917667665!GO:0045185;maintenance of protein localization;0.0450622515078047!GO:0046426;negative regulation of JAK-STAT cascade;0.045988546322954!GO:0051059;NF-kappaB binding;0.0466873186520374!GO:0051235;maintenance of localization;0.0469125694080366!GO:0007041;lysosomal transport;0.0469125694080366!GO:0008234;cysteine-type peptidase activity;0.0469721958872372!GO:0043241;protein complex disassembly;0.0471079706255571!GO:0031301;integral to organelle membrane;0.0471079706255571!GO:0051336;regulation of hydrolase activity;0.0477815914841675!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0478736421951815!GO:0006458;'de novo' protein folding;0.047906421025846!GO:0051084;'de novo' posttranslational protein folding;0.047906421025846!GO:0047485;protein N-terminus binding;0.0484728877708558!GO:0006376;mRNA splice site selection;0.0486038784068819!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0486038784068819!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0488266963874487!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0488266963874487!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0488266963874487!GO:0010257;NADH dehydrogenase complex assembly;0.0488266963874487!GO:0033108;mitochondrial respiratory chain complex assembly;0.0488266963874487!GO:0051301;cell division;0.0489498750714162!GO:0031371;ubiquitin conjugating enzyme complex;0.0490357729110184!GO:0006807;nitrogen compound metabolic process;0.049074396647442!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0496436995384856
 |sample_id=11405
 |sample_note=
@@ Line 76: / Line 105: @@
 |sample_tissue=prostate
 |top_motifs=TAL1_TCF{3,4,12}:2.46756241415;ALX4:2.00947148138;ESR1:1.83562720736;UFEwm:1.78053064485;RXR{A,B,G}:1.69061228304;PAX1,9:1.62001365091;HMX1:1.51745069345;ZNF238:1.46635862485;GZF1:1.44839182873;TFAP4:1.37130579247;KLF4:1.33424259823;MYBL2:1.28333866928;EBF1:1.20095796572;HSF1,2:1.17058967035;PATZ1:1.10731564368;FOXL1:1.05216944712;TP53:1.02423859431;NKX2-2,8:0.999036799841;ZBTB6:0.991543461557;ZNF423:0.967375848684;TEAD1:0.950772132934;TFCP2:0.942399415555;TOPORS:0.941388845543;SPZ1:0.884346666418;GLI1..3:0.81598609882;TEF:0.81307559373;NKX3-1:0.798924617252;TFAP2{A,C}:0.797743644878;EVI1:0.78782539858;ATF6:0.777191454709;ZIC1..3:0.755359379407;TLX1..3_NFIC{dimer}:0.745498178154;SRF:0.735222228604;NR6A1:0.731745314396;MAZ:0.724263133305;GFI1B:0.673810136696;TFAP2B:0.644662361109;NFIX:0.643320894517;MTE{core}:0.604517361361;GTF2I:0.603109737951;GTF2A1,2:0.602561228477;MYFfamily:0.595361305273;NFE2L1:0.593053738554;XBP1:0.574368133286;LHX3,4:0.567661377335;YY1:0.557878179202;AIRE:0.548390902177;bHLH_family:0.540475312661;EGR1..3:0.526316817687;NR3C1:0.524250059556;PPARG:0.51750175489;HIC1:0.511697540861;XCPE1{core}:0.505794320652;HES1:0.461766770478;ZNF384:0.410247842362;GATA4:0.397701908541;SREBF1,2:0.397661645838;EN1,2:0.395046816259;HOX{A4,D4}:0.388782766125;IKZF1:0.368668422243;TBP:0.352740833376;NFE2L2:0.341648035455;PAX5:0.340743947622;RXRA_VDR{dimer}:0.331465150106;HMGA1,2:0.330066882313;RREB1:0.314232266326;NHLH1,2:0.308814921308;HNF4A_NR2F1,2:0.307717910495;TBX4,5:0.287290701556;SP1:0.285247309225;HLF:0.279493044598;MZF1:0.258291844827;IRF1,2:0.236282978962;MAFB:0.185305446511;STAT5{A,B}:0.180772061369;NANOG{mouse}:0.160960229487;NR5A1,2:0.157958174571;PRDM1:0.155116770633;NR1H4:0.138046288984;ARID5B:0.136073800928;SMAD1..7,9:0.0952291387282;ESRRA:0.090449640693;FOXO1,3,4:0.088974989206;REST:0.0835391572622;MED-1{core}:0.0497824357351;CDC5L:0.0303651230206;ONECUT1,2:0.0289554760439;NFATC1..3:0.000925890139978;FOX{I1,J2}:-0.012194986561;NFE2:-0.0387435245823;HAND1,2:-0.0434489284678;PAX4:-0.0439635617528;SOX5:-0.0658901089716;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0700237186106;STAT2,4,6:-0.0721265158146;LMO2:-0.0802119333108;HNF1A:-0.113502807371;ZNF148:-0.114129065016;BACH2:-0.137429722585;HOX{A5,B5}:-0.140120910625;FOXQ1:-0.147988079911;ZFP161:-0.167797357298;MTF1:-0.169270773054;DBP:-0.171912753251;NKX3-2:-0.194207938122;FOXM1:-0.220555486704;ELK1,4_GABP{A,B1}:-0.225925835639;NFKB1_REL_RELA:-0.231941562626;RFX1:-0.242879392558;NKX6-1,2:-0.245046346623;FOX{D1,D2}:-0.248036666993;GFI1:-0.258743337465;GCM1,2:-0.279238345731;HOXA9_MEIS1:-0.282303726447;DMAP1_NCOR{1,2}_SMARC:-0.282989860818;CRX:-0.283640098105;LEF1_TCF7_TCF7L1,2:-0.291131646732;NRF1:-0.317583352432;POU3F1..4:-0.341808303856;IRF7:-0.347557919206;FOXD3:-0.347826539449;SOX17:-0.354747428217;CEBPA,B_DDIT3:-0.361644324866;FOS_FOS{B,L1}_JUN{B,D}:-0.367002490762;HIF1A:-0.370538164072;T:-0.374952806043;PRRX1,2:-0.3776674243;MEF2{A,B,C,D}:-0.380142856917;ZNF143:-0.404203473324;AR:-0.407829656985;FOXP3:-0.439495843862;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.462143729137;BREu{core}:-0.476083107324;MYB:-0.481047822047;FOSL2:-0.483960063097;BPTF:-0.537116410404;FOXP1:-0.553390562913;HOX{A6,A7,B6,B7}:-0.561117643801;NFIL3:-0.564079841368;AHR_ARNT_ARNT2:-0.590619981365;RFX2..5_RFXANK_RFXAP:-0.594444530655;NKX2-1,4:-0.59669046373;RUNX1..3:-0.597196348219;FOX{F1,F2,J1}:-0.597475479008;TLX2:-0.606052397775;TFDP1:-0.606345834444;ATF5_CREB3:-0.610486864668;ETS1,2:-0.617002834565;MYOD1:-0.620431038094;POU1F1:-0.622321039259;TGIF1:-0.628441184351;STAT1,3:-0.633182476324;ATF2:-0.63939663061;CDX1,2,4:-0.643974864946;ZBTB16:-0.667071921104;JUN:-0.676123978511;FOXN1:-0.728273443306;SPIB:-0.732065597638;FOXA2:-0.742479313405;POU6F1:-0.748361213093;PITX1..3:-0.755919680204;SPI1:-0.787575921294;SNAI1..3:-0.794061043307;PAX6:-0.797965729564;SOX2:-0.806180415943;PAX3,7:-0.813396945199;ATF4:-0.828770182031;RBPJ:-0.844622912835;ELF1,2,4:-0.856559176417;RORA:-0.918943220155;EP300:-0.922197705191;GATA6:-0.926581454027;PAX8:-0.931150855483;CREB1:-0.953220783731;E2F1..5:-0.956256822992;ADNP_IRX_SIX_ZHX:-0.959474473655;POU5F1:-0.959580336253;OCT4_SOX2{dimer}:-0.960931391751;ZEB1:-1.02070593115;ALX1:-1.03339683038;NKX2-3_NKX2-5:-1.05761628176;CUX2:-1.06193946359;PAX2:-1.0647163251;VSX1,2:-1.08254397844;PBX1:-1.13081333161;PDX1:-1.16169574074;NFY{A,B,C}:-1.26800116689;SOX{8,9,10}:-1.27282432104;IKZF2:-1.33479414151;POU2F1..3:-1.49515012215;HBP1_HMGB_SSRP1_UBTF:-1.50952802769;NANOG:-1.51168787439
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11405-118E1;search_select_hide=table117:FF:11405-118E1
 }}

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FF:11405-118E1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:58, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0