FF:11494-119E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005481 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |accession_numbers=CAGE;DRX008375;DRR009247;DRZ000672;DRZ002057;DRZ012022;DRZ013407 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000348 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor1.CNhs12338.11494-119E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor1.CNhs12338.11494-119E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor1.CNhs12338.11494-119E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor1.CNhs12338.11494-119E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor1.CNhs12338.11494-119E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11494-119E9 | |id=FF:11494-119E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000348 | ||
|is_obsolete= | |||
|library_id=CNhs12338 | |||
|library_id_phase_based=2:CNhs12338 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11494 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11494 | |||
|name=Neurons, donor1 | |name=Neurons, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12338,LSID913,release011,COMPLETED | |profile_hcage=CNhs12338,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.248779474225184,0,-0.160318030086386,0,-0.277362132193514,0.65802899124006,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.974881571425387,0,0,1.10355711911849,0,0,0,0,0,0,0,0,0,0,0,0,0.000453634203537778,0.248779474225184,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.40595691901074,0,0.0550507038336554,0,0.424128250695853,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.40595691901074,0,0,0,0,0.248779474225184,0,0,0,0.0780088216385156,0,0,0,0,0,0.0084973794310872,-0.00242994168462662,0,0,0,-0.0443027194383008,0.217055586321813,0.124389737112592,0.40595691901074,0,0,-0.0980353512377064,0.573297529017985,0,0,0,0,0,0,0,0,0,0,0.124389737112592,0,0,0,0,0,0,0.0280161431901311,0.248779474225184,0,0,-0.0732282963336717,-0.306811335906236,0,0,0.189418371206628,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.248779474225184,0,0,0,0,0,0.40595691901074,0,0,-0.247178875285564,0.145478721513293,0.382419759283356,-0.143515142523472,0,0,0.0407165181289773,0,0,0,0,0,0,0.248779474225184,0.248779474225184,0.807062708744599,-0.128119866952565,0,-0.0504125515893149,0.124389737112592,0,0.0561143103280156,0,-0.0186252810838506,-0.0566927566732233,0,0.0287203983558603,-0.0683442610773682,0,0,0,0,-0.067262209828954,0,-0.120879483793741,-0.0827201683234173,0.90089120597075,0.129960463400604,-0.055712496781182,0,0,0.124389737112592,0.605198043103888,0.081968613219855,0,0,0.221826016174082,0.339770993377799,0,0,0.0149123374591055,0,0.110598460379182,-0.0745038896915591,0,0.0405197652491124,0,0,0,0,0.687211735851912,0.248779474225184,0,0,0.807062708744599,0.124389737112592,0,0.410502138217112,-0.326988596678969,0.0871717249682345,0,0.40595691901074,0,0.0978313329960135,0,0,-0.373286155956567,-0.269631976484861,0.108957882610844,0.292387029078131,0,0.218730884928545,-0.00430819671232907,-0.16345532579936,0.446322524448669,0.86456869462577,-0.189981719549847,0,-0.00601579557306686,0.55375082839221,0.121972730835319,-0.349058278918746,0.150120240246256,0.0929873248982642,0.0948883490210648,0,0,-0.0775089264793031,0.0419189215071697,0.00424025380509108,0,-0.0841577954660334,0.38657865621239,0.155992293078393,0.285906842218235,-0.051209213037825,0.3421477389553,0.834577774258902,0.154621764610149,0.031771469505387,0.00884652096226451,0.211260213153566,0.521120611938458,0,0.00296237740086835,-0.0987003712554105,-0.209869254167939,0,-0.483977461810981,-0.0683442610773682,0.771858856943638,0.452601874443449,0.246137363177139,0,0.0992183085937524,-0.578777230871412,0,0,-0.0878029293465388,0.242293571363971,0,0.302769170623589,-0.290712668804982,-0.232855561555545,0,0.0994848265827445,-0.22783568560171,0.0783431868042255,0,0.256402853214617,-0.202170761610805,0.0772166369019286,0.197747172391355,0,-0.0692337765167741,-0.447882394722929,-0.135328975094148,0.434111172643627,1.9347000293018,0.420158951272251,-0.096322434243582,-0.0443027194383008,-0.788939864790226,0.441543975918518,-0.0881268324752877,0.248779474225184,0.267086134529602,-0.43071865739634,-0.00856994592306037,-0.0169404895069709,0.241401161374072,-0.166978391802969,0,0.0063417795047358,0,-0.0234601526315059,0.316072226562125,0.0818312373577719,-0.326308778369933,0,0.096568218594489,0.112760268196775,0,-0.261478094933009,0,0,0.370753528603819,-0.448916492287399,0.0371290463605949,0.0639890028261753,0,-0.384123239378916,0.248779474225184,0,0.366449779528929,0.0133034364607953,0.248779474225184,0.382149737650767,0.0780088216385156,0.66961001652905,-0.115971073434934,0.40595691901074,0,-0.396920863767541,0.248779474225184,0,0.667897993906315,0.154476929993932,0.735324892352339,0.433885394365156,0.361127979042987,0.197406299299116,0,0.521120611938458,-0.177527765965176,0,0.0273455102869721,0,0,0.178371692418858,0,0,0.306029108753372,1.77648289086562,-0.0708759534451725,0,0,0.751258534313624,0,0,0,0.00482088076228349,-0.091059509645712,-0.106053855991264,0,-0.00722660176856404,0,0.248779474225184,0,0,0.521120611938458,0,0,0,0.404214451429204,0,0.125762058548764,0.124389737112592,0,0.20297845950537,0,0.190233516457265,0.202720356916016,0.40595691901074,0.389257905440826,0.248779474225184,0.124389737112592,0,0,-0.0861409897892114,0,0,0.20297845950537,0,0.55432776045308,0.302991077685236,0,0,0,1.14659505803597,0.40595691901074,0,0,0,-0.132847717984891,0,0,0.248779474225184,0,-0.257848887811566,0.439538732391617,0.215884076044935,0.0903458216354425,-0.206254259892317,-0.158989455600479,0,0,0.350711085716856,0,0,-0.284685787319624,0.0342503022410779,0,0.184318918483721,0,0,0,0,0.061249887882431,0,1.41669876596437,0,0,0,0,0.248779474225184,0.40595691901074,0,0.521120611938458,0,0,0,0.169548850509981,-0.0922240566585104,0,0,0,0.248779474225184,0,0,0,-0.0241060230789031,0.0680383057334873,0,0,0,0,0,0.40595691901074,0,0,0.279832594650382,0.124389737112592,0,0.40595691901074,0,0,0.424128250695853,0,0,0,0,1.31605798248012,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282637832975292,-0.384234414365033,0,0,0,0,0,0,0,0.246287313732368,0,0,0,0,0.134895100516207,0,0,0,0.416324227149302,0,-0.160318030086386,0.248779474225184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.282408766960648,0,0.177129436654195,-0.0093178389484394,0,0,0.380764331305719,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248779474225184,0,0,0,0,0,0,0.141610532020456,0,0,0,0,0,0,0,0.974881571425387,0,0,0.032356927312066,0,0,0,0,0,0,-0.0274165346874803,0.320945774072038,0.169532872987257,0,0,0.248779474225184,0.289220295443501,0.40595691901074,0,0.0845272091874775,0,-0.0667773874189013,0,0,0,0,0.124389737112592,0,0,0,0,0,0,0,0,0,0.248779474225184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124389737112592,0,0,0,0,0,0,0,0.248779474225184,0,0,0,0.0903783738371755,0,0,0,0.248779474225184,0,0,0,0,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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC1525 | |rna_catalog_number=SC1525 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.19E+11 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.33585554745247e-251!GO:0043226;organelle;8.91054163071472e-214!GO:0043229;intracellular organelle;4.4024307833584e-213!GO:0043231;intracellular membrane-bound organelle;1.87439531350622e-209!GO:0043227;membrane-bound organelle;1.87439531350622e-209!GO:0005737;cytoplasm;6.72251678570534e-146!GO:0044422;organelle part;1.26754576816915e-130!GO:0044446;intracellular organelle part;3.55334554400357e-129!GO:0005634;nucleus;2.60853946729687e-108!GO:0032991;macromolecular complex;8.69951264640502e-105!GO:0044444;cytoplasmic part;2.78730772930317e-98!GO:0030529;ribonucleoprotein complex;8.00092025742309e-91!GO:0044237;cellular metabolic process;2.29178713594569e-83!GO:0043170;macromolecule metabolic process;2.35634626771209e-83!GO:0044238;primary metabolic process;1.84163893997941e-82!GO:0003723;RNA binding;1.01660684464247e-78!GO:0005515;protein binding;4.40163760842828e-74!GO:0044428;nuclear part;7.38476277892682e-74!GO:0043233;organelle lumen;9.83258658094904e-65!GO:0031974;membrane-enclosed lumen;9.83258658094904e-65!GO:0016043;cellular component organization and biogenesis;6.1663596222789e-63!GO:0043283;biopolymer metabolic process;1.60704610368741e-62!GO:0010467;gene expression;3.10925727059013e-62!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.50926985632236e-57!GO:0006396;RNA processing;1.31321364319216e-54!GO:0043234;protein complex;5.45801275084354e-52!GO:0005739;mitochondrion;6.52051529874301e-52!GO:0005840;ribosome;3.61129905374763e-50!GO:0031981;nuclear lumen;1.69838030463911e-44!GO:0016071;mRNA metabolic process;5.3761969989602e-44!GO:0003735;structural constituent of ribosome;7.30235904288134e-44!GO:0008380;RNA splicing;6.82569332564314e-43!GO:0003676;nucleic acid binding;1.60831586137996e-42!GO:0006412;translation;1.29350164616082e-40!GO:0006996;organelle organization and biogenesis;2.01925826451371e-40!GO:0006397;mRNA processing;7.58193146683915e-40!GO:0033036;macromolecule localization;1.08440327286445e-39!GO:0031090;organelle membrane;4.32619392880873e-39!GO:0015031;protein transport;1.1317559241263e-38!GO:0033279;ribosomal subunit;1.3521658504754e-38!GO:0043228;non-membrane-bound organelle;2.84302405634427e-36!GO:0043232;intracellular non-membrane-bound organelle;2.84302405634427e-36!GO:0044429;mitochondrial part;8.64625940404479e-36!GO:0008104;protein localization;1.05089583750358e-35!GO:0016070;RNA metabolic process;1.77903381081152e-35!GO:0045184;establishment of protein localization;4.14867999473159e-35!GO:0031967;organelle envelope;7.51559770178918e-34!GO:0031975;envelope;9.71695956103293e-34!GO:0046907;intracellular transport;2.6460619230892e-33!GO:0019538;protein metabolic process;6.00349029170655e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.32129557536818e-31!GO:0005829;cytosol;1.88698876763776e-30!GO:0005681;spliceosome;3.55406173948724e-30!GO:0006259;DNA metabolic process;3.72194313731752e-30!GO:0065003;macromolecular complex assembly;1.01864822952228e-28!GO:0044267;cellular protein metabolic process;2.03754957159065e-28!GO:0044260;cellular macromolecule metabolic process;2.11529159657585e-28!GO:0009059;macromolecule biosynthetic process;1.61830494389738e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.88217842571823e-27!GO:0044249;cellular biosynthetic process;7.01679718173305e-27!GO:0009058;biosynthetic process;6.59856086305809e-26!GO:0005654;nucleoplasm;6.8527044196762e-26!GO:0006886;intracellular protein transport;1.39860116708809e-25!GO:0022607;cellular component assembly;1.42768336425828e-25!GO:0051649;establishment of cellular localization;1.70587414186078e-25!GO:0051641;cellular localization;9.32842666359298e-25!GO:0005740;mitochondrial envelope;2.94055707862785e-24!GO:0006119;oxidative phosphorylation;3.03794769573571e-24!GO:0019866;organelle inner membrane;3.36859373530621e-23!GO:0031966;mitochondrial membrane;5.76987413845891e-23!GO:0044451;nucleoplasm part;3.90530586515628e-22!GO:0044445;cytosolic part;1.75323684836196e-21!GO:0005743;mitochondrial inner membrane;3.08261680390806e-21!GO:0044455;mitochondrial membrane part;3.07876979731245e-20!GO:0016462;pyrophosphatase activity;3.13703975154523e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.77743998762652e-20!GO:0017111;nucleoside-triphosphatase activity;3.83913409522521e-20!GO:0015935;small ribosomal subunit;4.04139145211454e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.22419408659881e-20!GO:0015934;large ribosomal subunit;1.93921082667196e-19!GO:0000166;nucleotide binding;1.14820021086458e-18!GO:0005730;nucleolus;5.12922535082161e-18!GO:0005746;mitochondrial respiratory chain;5.12922535082161e-18!GO:0007049;cell cycle;8.4824631575985e-18!GO:0051276;chromosome organization and biogenesis;1.36844229347085e-17!GO:0022618;protein-RNA complex assembly;2.56622946389726e-17!GO:0050136;NADH dehydrogenase (quinone) activity;5.36102537113655e-17!GO:0003954;NADH dehydrogenase activity;5.36102537113655e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.36102537113655e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.598333944056e-17!GO:0006512;ubiquitin cycle;9.81805808267607e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22370439827093e-16!GO:0005694;chromosome;1.22370439827093e-16!GO:0006323;DNA packaging;5.99207527489624e-16!GO:0006457;protein folding;1.66484859778986e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;4.62975663457676e-15!GO:0000375;RNA splicing, via transesterification reactions;4.62975663457676e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.62975663457676e-15!GO:0012505;endomembrane system;6.07185219274151e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.98725497324935e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.06087708873114e-14!GO:0045271;respiratory chain complex I;1.06087708873114e-14!GO:0005747;mitochondrial respiratory chain complex I;1.06087708873114e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.0771837198944e-14!GO:0044427;chromosomal part;1.16126221414987e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.63256228628407e-14!GO:0042773;ATP synthesis coupled electron transport;1.63256228628407e-14!GO:0008134;transcription factor binding;1.70295331353566e-14!GO:0008135;translation factor activity, nucleic acid binding;1.95601153374134e-14!GO:0006974;response to DNA damage stimulus;2.44590443088874e-14!GO:0016874;ligase activity;3.48167998001246e-14!GO:0031980;mitochondrial lumen;3.48167998001246e-14!GO:0005759;mitochondrial matrix;3.48167998001246e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.55718398724055e-14!GO:0042254;ribosome biogenesis and assembly;3.95554839381017e-14!GO:0005761;mitochondrial ribosome;4.41626433566194e-14!GO:0000313;organellar ribosome;4.41626433566194e-14!GO:0005794;Golgi apparatus;4.91417512200443e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.61414005224639e-13!GO:0050794;regulation of cellular process;3.74160445673706e-13!GO:0022402;cell cycle process;4.86038441628911e-13!GO:0006605;protein targeting;8.8832291772216e-13!GO:0032553;ribonucleotide binding;1.43169135166921e-12!GO:0032555;purine ribonucleotide binding;1.43169135166921e-12!GO:0006333;chromatin assembly or disassembly;1.44059830359213e-12!GO:0016192;vesicle-mediated transport;1.58203076488043e-12!GO:0048770;pigment granule;1.58203076488043e-12!GO:0042470;melanosome;1.58203076488043e-12!GO:0065004;protein-DNA complex assembly;3.18419229166534e-12!GO:0006281;DNA repair;3.92232858617039e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.02603887275348e-12!GO:0019222;regulation of metabolic process;5.18645713246284e-12!GO:0044265;cellular macromolecule catabolic process;5.55475116681836e-12!GO:0031965;nuclear membrane;9.04601458831086e-12!GO:0015630;microtubule cytoskeleton;9.59692887640582e-12!GO:0006511;ubiquitin-dependent protein catabolic process;9.7209131185437e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.07067686971937e-11!GO:0019941;modification-dependent protein catabolic process;1.13991924523424e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.13991924523424e-11!GO:0051082;unfolded protein binding;1.59067486523406e-11!GO:0044257;cellular protein catabolic process;2.51360537696946e-11!GO:0050789;regulation of biological process;2.51890902116775e-11!GO:0043285;biopolymer catabolic process;2.96294840339906e-11!GO:0048193;Golgi vesicle transport;3.41029234300033e-11!GO:0003743;translation initiation factor activity;5.01710764082084e-11!GO:0000278;mitotic cell cycle;5.13241750062632e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.10900815530975e-11!GO:0017076;purine nucleotide binding;6.33149332110807e-11!GO:0000785;chromatin;6.67730293456204e-11!GO:0016604;nuclear body;7.05645279157998e-11!GO:0051186;cofactor metabolic process;7.66017780388996e-11!GO:0044453;nuclear membrane part;7.78901180824801e-11!GO:0006260;DNA replication;1.37589323203695e-10!GO:0005635;nuclear envelope;2.02967897810957e-10!GO:0043412;biopolymer modification;2.45899748328068e-10!GO:0006413;translational initiation;2.47911942351533e-10!GO:0009057;macromolecule catabolic process;5.97980153809247e-10!GO:0006913;nucleocytoplasmic transport;6.34813517279513e-10!GO:0006350;transcription;7.0809326177362e-10!GO:0042623;ATPase activity, coupled;7.99325085318797e-10!GO:0016887;ATPase activity;8.2195995978553e-10!GO:0030163;protein catabolic process;8.51767490749671e-10!GO:0006364;rRNA processing;1.03120343136952e-09!GO:0005643;nuclear pore;1.08337115274971e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.11123246174549e-09!GO:0051169;nuclear transport;1.18427119800009e-09!GO:0006334;nucleosome assembly;1.30425680411589e-09!GO:0016607;nuclear speck;1.46640148975625e-09!GO:0016072;rRNA metabolic process;2.00848320190871e-09!GO:0008565;protein transporter activity;2.11223619984684e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.87394776383805e-09!GO:0006366;transcription from RNA polymerase II promoter;3.43435483363779e-09!GO:0006446;regulation of translational initiation;3.53653581767519e-09!GO:0009719;response to endogenous stimulus;4.00716066180555e-09!GO:0031497;chromatin assembly;5.00582570530988e-09!GO:0006403;RNA localization;5.89067320434687e-09!GO:0015986;ATP synthesis coupled proton transport;5.89067320434687e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.89067320434687e-09!GO:0006464;protein modification process;5.92344988328255e-09!GO:0000087;M phase of mitotic cell cycle;5.98341613508132e-09!GO:0005524;ATP binding;6.10853238780068e-09!GO:0006732;coenzyme metabolic process;6.53927477922221e-09!GO:0007067;mitosis;7.59601114973167e-09!GO:0003924;GTPase activity;7.77705489499655e-09!GO:0003712;transcription cofactor activity;7.82225062694592e-09!GO:0031323;regulation of cellular metabolic process;7.90582684900307e-09!GO:0019829;cation-transporting ATPase activity;9.2385856975978e-09!GO:0032559;adenyl ribonucleotide binding;9.67292992324339e-09!GO:0050657;nucleic acid transport;1.13971033649071e-08!GO:0051236;establishment of RNA localization;1.13971033649071e-08!GO:0050658;RNA transport;1.13971033649071e-08!GO:0009259;ribonucleotide metabolic process;1.63850885586799e-08!GO:0043687;post-translational protein modification;1.95596997528495e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.73243772211149e-08!GO:0000074;regulation of progression through cell cycle;2.73549703715729e-08!GO:0051726;regulation of cell cycle;3.06832058042327e-08!GO:0051301;cell division;3.73417673793242e-08!GO:0009141;nucleoside triphosphate metabolic process;3.76114101124399e-08!GO:0032774;RNA biosynthetic process;3.84095062451233e-08!GO:0008639;small protein conjugating enzyme activity;4.05402553492661e-08!GO:0006163;purine nucleotide metabolic process;4.35800375251011e-08!GO:0006351;transcription, DNA-dependent;4.44826500248306e-08!GO:0009060;aerobic respiration;4.61416427623315e-08!GO:0048523;negative regulation of cellular process;4.68777760351569e-08!GO:0022403;cell cycle phase;4.80763399388514e-08!GO:0004386;helicase activity;4.89440663254809e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.00851801286796e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.00851801286796e-08!GO:0016568;chromatin modification;5.30551581037002e-08!GO:0044248;cellular catabolic process;5.47260641785158e-08!GO:0009150;purine ribonucleotide metabolic process;5.67570413798011e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.14632276858184e-08!GO:0031988;membrane-bound vesicle;6.17536886214199e-08!GO:0010468;regulation of gene expression;6.57799213748e-08!GO:0046034;ATP metabolic process;6.66682890587424e-08!GO:0008026;ATP-dependent helicase activity;7.1890895610643e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.57169940352376e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.57169940352376e-08!GO:0004842;ubiquitin-protein ligase activity;8.66126190485419e-08!GO:0006399;tRNA metabolic process;8.83179231320429e-08!GO:0005783;endoplasmic reticulum;9.47334470534612e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.07331079269958e-07!GO:0019787;small conjugating protein ligase activity;1.2511156769519e-07!GO:0009055;electron carrier activity;1.33064172928051e-07!GO:0045333;cellular respiration;1.51124215978065e-07!GO:0006754;ATP biosynthetic process;1.59993983961666e-07!GO:0006753;nucleoside phosphate metabolic process;1.59993983961666e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.60127467640633e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.60127467640633e-07!GO:0065002;intracellular protein transport across a membrane;1.68100961777677e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.0978127551603e-07!GO:0046930;pore complex;2.0978127551603e-07!GO:0009260;ribonucleotide biosynthetic process;2.26944323574087e-07!GO:0017038;protein import;2.63207588202776e-07!GO:0006164;purine nucleotide biosynthetic process;3.22233642487449e-07!GO:0030554;adenyl nucleotide binding;3.29844999361619e-07!GO:0000245;spliceosome assembly;3.39254572709566e-07!GO:0043566;structure-specific DNA binding;3.98096719314474e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.27150972328398e-07!GO:0031982;vesicle;4.27150972328398e-07!GO:0044431;Golgi apparatus part;4.87391884251896e-07!GO:0051028;mRNA transport;6.20183503404865e-07!GO:0005874;microtubule;6.84196386597326e-07!GO:0015631;tubulin binding;7.39339688221769e-07!GO:0031410;cytoplasmic vesicle;7.93601396177311e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.67051110099073e-07!GO:0045449;regulation of transcription;9.11203138465323e-07!GO:0003697;single-stranded DNA binding;1.00817942569738e-06!GO:0045259;proton-transporting ATP synthase complex;1.17941263637955e-06!GO:0007010;cytoskeleton organization and biogenesis;1.18200329855996e-06!GO:0000279;M phase;1.28625579012756e-06!GO:0048519;negative regulation of biological process;1.48185124067063e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.83155656173399e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.83155656173399e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.83155656173399e-06!GO:0006099;tricarboxylic acid cycle;1.85336422403854e-06!GO:0046356;acetyl-CoA catabolic process;1.85336422403854e-06!GO:0044432;endoplasmic reticulum part;1.95561095148779e-06!GO:0032446;protein modification by small protein conjugation;2.02744438495182e-06!GO:0003677;DNA binding;2.07785363987295e-06!GO:0005525;GTP binding;2.25441426754343e-06!GO:0016881;acid-amino acid ligase activity;2.32233363707571e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.81787329334796e-06!GO:0005768;endosome;2.98365456921426e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.03146495407435e-06!GO:0003729;mRNA binding;3.46465723006591e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.81980916167611e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.06774851748676e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.07509167272777e-06!GO:0006355;regulation of transcription, DNA-dependent;4.31884797444678e-06!GO:0031252;leading edge;4.38127463299434e-06!GO:0065007;biological regulation;5.05570370724499e-06!GO:0006084;acetyl-CoA metabolic process;5.75317486348599e-06!GO:0005667;transcription factor complex;5.79163299381537e-06!GO:0051188;cofactor biosynthetic process;5.79163299381537e-06!GO:0016567;protein ubiquitination;5.79163299381537e-06!GO:0043038;amino acid activation;7.07307035977319e-06!GO:0006418;tRNA aminoacylation for protein translation;7.07307035977319e-06!GO:0043039;tRNA aminoacylation;7.07307035977319e-06!GO:0007005;mitochondrion organization and biogenesis;8.33293694562234e-06!GO:0048475;coated membrane;8.57231818304624e-06!GO:0030117;membrane coat;8.57231818304624e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.02335827949618e-05!GO:0006752;group transfer coenzyme metabolic process;1.05143851425957e-05!GO:0016363;nuclear matrix;1.17742719488685e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.3288336812726e-05!GO:0016564;transcription repressor activity;1.50829175404137e-05!GO:0006793;phosphorus metabolic process;1.73942053854354e-05!GO:0006796;phosphate metabolic process;1.73942053854354e-05!GO:0005762;mitochondrial large ribosomal subunit;1.76614780864716e-05!GO:0000315;organellar large ribosomal subunit;1.76614780864716e-05!GO:0003724;RNA helicase activity;1.80834081688955e-05!GO:0007017;microtubule-based process;1.9016595184637e-05!GO:0006461;protein complex assembly;1.90643728271275e-05!GO:0005793;ER-Golgi intermediate compartment;1.91234529579579e-05!GO:0051187;cofactor catabolic process;1.91234529579579e-05!GO:0032561;guanyl ribonucleotide binding;2.95663354022382e-05!GO:0019001;guanyl nucleotide binding;2.95663354022382e-05!GO:0000139;Golgi membrane;2.96649247415973e-05!GO:0009109;coenzyme catabolic process;3.00512573521764e-05!GO:0009108;coenzyme biosynthetic process;3.83878859027942e-05!GO:0030120;vesicle coat;4.02746106428165e-05!GO:0030662;coated vesicle membrane;4.02746106428165e-05!GO:0016310;phosphorylation;4.07918605206386e-05!GO:0009892;negative regulation of metabolic process;4.20957433080917e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.3543607665434e-05!GO:0051427;hormone receptor binding;4.51928870915372e-05!GO:0004298;threonine endopeptidase activity;4.56242187722501e-05!GO:0005813;centrosome;5.10305782094883e-05!GO:0006613;cotranslational protein targeting to membrane;5.33168828198405e-05!GO:0003714;transcription corepressor activity;5.33168828198405e-05!GO:0045045;secretory pathway;5.45818662928796e-05!GO:0043623;cellular protein complex assembly;6.32449061401521e-05!GO:0031324;negative regulation of cellular metabolic process;6.33175411887127e-05!GO:0008092;cytoskeletal protein binding;6.4855816080242e-05!GO:0045786;negative regulation of progression through cell cycle;6.73036382474479e-05!GO:0005789;endoplasmic reticulum membrane;7.24510641647589e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.36646520907918e-05!GO:0000902;cell morphogenesis;8.3939281583368e-05!GO:0032989;cellular structure morphogenesis;8.3939281583368e-05!GO:0008017;microtubule binding;8.96871474230508e-05!GO:0006261;DNA-dependent DNA replication;9.36490001731139e-05!GO:0016126;sterol biosynthetic process;9.51741407897545e-05!GO:0051168;nuclear export;9.70818113721786e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.73740266982306e-05!GO:0035257;nuclear hormone receptor binding;9.85666417569417e-05!GO:0048471;perinuclear region of cytoplasm;0.000100734795211775!GO:0000314;organellar small ribosomal subunit;0.000101873877913757!GO:0005763;mitochondrial small ribosomal subunit;0.000101873877913757!GO:0019843;rRNA binding;0.000102452672945405!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000102626712085168!GO:0051170;nuclear import;0.000103582330870273!GO:0005905;coated pit;0.000103871925775734!GO:0000786;nucleosome;0.000110135015231162!GO:0006606;protein import into nucleus;0.00011131496572072!GO:0012501;programmed cell death;0.000113741229091085!GO:0005770;late endosome;0.000138885387898561!GO:0006414;translational elongation;0.000145474645132128!GO:0051246;regulation of protein metabolic process;0.000155638368299187!GO:0006915;apoptosis;0.000157704308122413!GO:0003899;DNA-directed RNA polymerase activity;0.00016435080413161!GO:0003713;transcription coactivator activity;0.00016543194363779!GO:0043069;negative regulation of programmed cell death;0.00017674295169637!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000182075185505664!GO:0005815;microtubule organizing center;0.000196877318357769!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00020192331007166!GO:0006916;anti-apoptosis;0.000203668337722755!GO:0043066;negative regulation of apoptosis;0.000222176239716405!GO:0008219;cell death;0.000253094152156111!GO:0016265;death;0.000253094152156111!GO:0008361;regulation of cell size;0.000276877247300193!GO:0044452;nucleolar part;0.00027997973659153!GO:0043681;protein import into mitochondrion;0.000303389674938203!GO:0006695;cholesterol biosynthetic process;0.000306777898638344!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000316339168293558!GO:0016049;cell growth;0.000323061884084577!GO:0044440;endosomal part;0.000343419735045769!GO:0010008;endosome membrane;0.000343419735045769!GO:0008186;RNA-dependent ATPase activity;0.000354986518608838!GO:0016481;negative regulation of transcription;0.000371540857745737!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000389153593623565!GO:0051128;regulation of cellular component organization and biogenesis;0.000392599926363509!GO:0003682;chromatin binding;0.000412132412891675!GO:0005769;early endosome;0.000420962438979475!GO:0003690;double-stranded DNA binding;0.000451044257807305!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000451044257807305!GO:0016779;nucleotidyltransferase activity;0.000467663020689555!GO:0005875;microtubule associated complex;0.000472969315239482!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000548176935764136!GO:0005798;Golgi-associated vesicle;0.000608063406968955!GO:0005819;spindle;0.000626619584200108!GO:0009056;catabolic process;0.00064199580994599!GO:0031124;mRNA 3'-end processing;0.000658576865194764!GO:0003684;damaged DNA binding;0.000660938405315336!GO:0043021;ribonucleoprotein binding;0.000677373844117244!GO:0006612;protein targeting to membrane;0.000782792731027557!GO:0030027;lamellipodium;0.000891605405012308!GO:0051920;peroxiredoxin activity;0.000965071509512871!GO:0000151;ubiquitin ligase complex;0.000973296419860978!GO:0005657;replication fork;0.00102007920103179!GO:0016853;isomerase activity;0.00103768091523369!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103768091523369!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103768091523369!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103768091523369!GO:0004004;ATP-dependent RNA helicase activity;0.00104954739241795!GO:0006383;transcription from RNA polymerase III promoter;0.00121337083227402!GO:0008250;oligosaccharyl transferase complex;0.0012155675525707!GO:0016044;membrane organization and biogenesis;0.00122080254968808!GO:0051087;chaperone binding;0.00134360835651388!GO:0007399;nervous system development;0.00141371398337722!GO:0004576;oligosaccharyl transferase activity;0.00165124144603839!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00177705642488201!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0018075456860246!GO:0019899;enzyme binding;0.00187426702128942!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00188160636296162!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00188793412306282!GO:0000775;chromosome, pericentric region;0.00198436631581643!GO:0008139;nuclear localization sequence binding;0.00214334572661258!GO:0005869;dynactin complex;0.00219556292167337!GO:0016563;transcription activator activity;0.00229984103335873!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00232552761687022!GO:0005684;U2-dependent spliceosome;0.00234179394600754!GO:0008270;zinc ion binding;0.0023817783953941!GO:0030036;actin cytoskeleton organization and biogenesis;0.00252637989920491!GO:0015980;energy derivation by oxidation of organic compounds;0.00254989354293926!GO:0006352;transcription initiation;0.0025556452679428!GO:0001558;regulation of cell growth;0.0025660422589582!GO:0006626;protein targeting to mitochondrion;0.00259525291727093!GO:0009117;nucleotide metabolic process;0.00259789639179953!GO:0008654;phospholipid biosynthetic process;0.00260952693154416!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00265051566737121!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00265051566737121!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00265806144480083!GO:0048487;beta-tubulin binding;0.00272001456997212!GO:0048468;cell development;0.00272001456997212!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00275310169127538!GO:0015399;primary active transmembrane transporter activity;0.00275310169127538!GO:0051329;interphase of mitotic cell cycle;0.0028119618539751!GO:0008180;signalosome;0.0028119618539751!GO:0031123;RNA 3'-end processing;0.00285426022435137!GO:0045454;cell redox homeostasis;0.00295387766447436!GO:0016740;transferase activity;0.00304971711828022!GO:0016859;cis-trans isomerase activity;0.00312721738055701!GO:0006595;polyamine metabolic process;0.00314492122765126!GO:0050767;regulation of neurogenesis;0.00315954716313361!GO:0006405;RNA export from nucleus;0.00325306636155856!GO:0030880;RNA polymerase complex;0.00327613351720422!GO:0006402;mRNA catabolic process;0.00328082227135319!GO:0051252;regulation of RNA metabolic process;0.00367289902884922!GO:0005048;signal sequence binding;0.00369762519194905!GO:0006818;hydrogen transport;0.00371363254530233!GO:0000059;protein import into nucleus, docking;0.00372748959959145!GO:0006839;mitochondrial transport;0.00385092457767875!GO:0007051;spindle organization and biogenesis;0.00399376331792693!GO:0016272;prefoldin complex;0.00400219714845469!GO:0031072;heat shock protein binding;0.00406785481106474!GO:0016197;endosome transport;0.00408583311200669!GO:0008033;tRNA processing;0.00425488413947211!GO:0015992;proton transport;0.00426096189834528!GO:0032940;secretion by cell;0.00442879653791107!GO:0007264;small GTPase mediated signal transduction;0.00445225378881981!GO:0001726;ruffle;0.00459851744316928!GO:0003711;transcription elongation regulator activity;0.00463899302953468!GO:0008094;DNA-dependent ATPase activity;0.00470329711517519!GO:0000049;tRNA binding;0.0049575366873939!GO:0030118;clathrin coat;0.00496796997424025!GO:0007006;mitochondrial membrane organization and biogenesis;0.00497759836198027!GO:0051325;interphase;0.00532342704346738!GO:0008287;protein serine/threonine phosphatase complex;0.00534987451366087!GO:0043488;regulation of mRNA stability;0.00550672443074728!GO:0043487;regulation of RNA stability;0.00550672443074728!GO:0005741;mitochondrial outer membrane;0.00559374669098832!GO:0048500;signal recognition particle;0.00570430319539521!GO:0005637;nuclear inner membrane;0.00576465527613487!GO:0005885;Arp2/3 protein complex;0.00583867186534848!GO:0018196;peptidyl-asparagine modification;0.00593166416272734!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00593166416272734!GO:0003746;translation elongation factor activity;0.00611809038175488!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00619365404600203!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00625135004121538!GO:0016251;general RNA polymerase II transcription factor activity;0.00649028963849864!GO:0031968;organelle outer membrane;0.0065993896110548!GO:0006891;intra-Golgi vesicle-mediated transport;0.00664626551102874!GO:0000776;kinetochore;0.00679447787492539!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00724248796273396!GO:0033116;ER-Golgi intermediate compartment membrane;0.00736424390137906!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00738448538932223!GO:0000428;DNA-directed RNA polymerase complex;0.00738448538932223!GO:0006338;chromatin remodeling;0.00770037783438249!GO:0032508;DNA duplex unwinding;0.00796176101560398!GO:0032392;DNA geometric change;0.00796176101560398!GO:0030133;transport vesicle;0.00810229197353669!GO:0031901;early endosome membrane;0.00832394085253531!GO:0006401;RNA catabolic process;0.00832394085253531!GO:0006378;mRNA polyadenylation;0.00840521109468018!GO:0008312;7S RNA binding;0.00853604335920789!GO:0019867;outer membrane;0.00887700277776299!GO:0030867;rough endoplasmic reticulum membrane;0.00906980009201793!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00983612999670725!GO:0016585;chromatin remodeling complex;0.00991529232260617!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0102225288319004!GO:0000339;RNA cap binding;0.0104072753944081!GO:0045892;negative regulation of transcription, DNA-dependent;0.0109151188217217!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0110978182074763!GO:0055083;monovalent inorganic anion homeostasis;0.0110978182074763!GO:0055064;chloride ion homeostasis;0.0110978182074763!GO:0030644;cellular chloride ion homeostasis;0.0110978182074763!GO:0030176;integral to endoplasmic reticulum membrane;0.0111943952468172!GO:0006376;mRNA splice site selection;0.0113511786084501!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0113511786084501!GO:0005832;chaperonin-containing T-complex;0.0113711435792468!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0120130632932685!GO:0045047;protein targeting to ER;0.0120130632932685!GO:0051539;4 iron, 4 sulfur cluster binding;0.0120600874804498!GO:0030427;site of polarized growth;0.0122859972565974!GO:0043624;cellular protein complex disassembly;0.0124703019666869!GO:0031902;late endosome membrane;0.0124800708965213!GO:0016584;nucleosome positioning;0.0125341996149733!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0128910604461048!GO:0015002;heme-copper terminal oxidase activity;0.0128910604461048!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0128910604461048!GO:0004129;cytochrome-c oxidase activity;0.0128910604461048!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0129990751797851!GO:0009116;nucleoside metabolic process;0.0132320166679424!GO:0007021;tubulin folding;0.0136100623398009!GO:0030029;actin filament-based process;0.0137531872635548!GO:0000209;protein polyubiquitination;0.0144816551049721!GO:0030521;androgen receptor signaling pathway;0.0149829555079798!GO:0005758;mitochondrial intermembrane space;0.0150586394375364!GO:0030137;COPI-coated vesicle;0.0156996622912448!GO:0032984;macromolecular complex disassembly;0.0163396312559866!GO:0051789;response to protein stimulus;0.0163428212579676!GO:0006986;response to unfolded protein;0.0163428212579676!GO:0005788;endoplasmic reticulum lumen;0.0168927384537838!GO:0043067;regulation of programmed cell death;0.0170195423528422!GO:0042981;regulation of apoptosis;0.0170195423528422!GO:0006268;DNA unwinding during replication;0.0170196325057325!GO:0006284;base-excision repair;0.0174984411455447!GO:0019887;protein kinase regulator activity;0.0177720141038831!GO:0030426;growth cone;0.017886417302808!GO:0008154;actin polymerization and/or depolymerization;0.0183446699321319!GO:0000178;exosome (RNase complex);0.0184039137011884!GO:0007019;microtubule depolymerization;0.0184868522390932!GO:0004674;protein serine/threonine kinase activity;0.018603134815783!GO:0007050;cell cycle arrest;0.0186227675816296!GO:0030658;transport vesicle membrane;0.0187025427117629!GO:0031970;organelle envelope lumen;0.0188906041835793!GO:0040029;regulation of gene expression, epigenetic;0.0203215948162619!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0203215948162619!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0205464316759547!GO:0004448;isocitrate dehydrogenase activity;0.0209678124940008!GO:0040008;regulation of growth;0.0210237245447255!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0212890853849819!GO:0008022;protein C-terminus binding;0.0217562311345544!GO:0003678;DNA helicase activity;0.0221634652427601!GO:0031529;ruffle organization and biogenesis;0.0224167650241658!GO:0000159;protein phosphatase type 2A complex;0.0226589637933468!GO:0030135;coated vesicle;0.0226628724353746!GO:0005876;spindle microtubule;0.0227766607337778!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0227869156055398!GO:0043022;ribosome binding;0.0228393083206058!GO:0030182;neuron differentiation;0.0228495638462657!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0229733094273833!GO:0043492;ATPase activity, coupled to movement of substances;0.0230785790808802!GO:0000075;cell cycle checkpoint;0.0232790172484416!GO:0000118;histone deacetylase complex;0.0234480216998832!GO:0051052;regulation of DNA metabolic process;0.0235477324466983!GO:0007052;mitotic spindle organization and biogenesis;0.0235477324466983!GO:0019207;kinase regulator activity;0.0240524705725492!GO:0031371;ubiquitin conjugating enzyme complex;0.0243554868600798!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0243554868600798!GO:0043241;protein complex disassembly;0.0245275929556612!GO:0005521;lamin binding;0.0246829960451106!GO:0006302;double-strand break repair;0.0257665049289138!GO:0030663;COPI coated vesicle membrane;0.0258805045516872!GO:0030126;COPI vesicle coat;0.0258805045516872!GO:0046914;transition metal ion binding;0.0268786566633545!GO:0006611;protein export from nucleus;0.0274013307938218!GO:0046128;purine ribonucleoside metabolic process;0.0276363056223111!GO:0042278;purine nucleoside metabolic process;0.0276363056223111!GO:0000792;heterochromatin;0.0282885834920218!GO:0035258;steroid hormone receptor binding;0.0287035073953106!GO:0030660;Golgi-associated vesicle membrane;0.0292322015371543!GO:0043433;negative regulation of transcription factor activity;0.0292997165893416!GO:0030516;regulation of axon extension;0.0294739111034489!GO:0050770;regulation of axonogenesis;0.0297094366044686!GO:0006360;transcription from RNA polymerase I promoter;0.0302202901522287!GO:0007004;telomere maintenance via telomerase;0.0304816170779923!GO:0009165;nucleotide biosynthetic process;0.0308773642681162!GO:0022008;neurogenesis;0.0321186688360661!GO:0046966;thyroid hormone receptor binding;0.0321902104958942!GO:0031109;microtubule polymerization or depolymerization;0.0322816691684436!GO:0051287;NAD binding;0.0326495650592469!GO:0016741;transferase activity, transferring one-carbon groups;0.0327949430451447!GO:0030134;ER to Golgi transport vesicle;0.0329262960581412!GO:0012506;vesicle membrane;0.0331424359288791!GO:0044433;cytoplasmic vesicle part;0.0332148336394035!GO:0050811;GABA receptor binding;0.0338833202310172!GO:0051540;metal cluster binding;0.0339003804860619!GO:0051536;iron-sulfur cluster binding;0.0339003804860619!GO:0008320;protein transmembrane transporter activity;0.0344319042061911!GO:0030032;lamellipodium biogenesis;0.0344319042061911!GO:0006979;response to oxidative stress;0.0344319042061911!GO:0030127;COPII vesicle coat;0.0344319042061911!GO:0012507;ER to Golgi transport vesicle membrane;0.0344319042061911!GO:0043284;biopolymer biosynthetic process;0.0344319042061911!GO:0005652;nuclear lamina;0.0349013448526084!GO:0000910;cytokinesis;0.0352702300052125!GO:0008601;protein phosphatase type 2A regulator activity;0.0355364453722672!GO:0000082;G1/S transition of mitotic cell cycle;0.0358172481585114!GO:0003730;mRNA 3'-UTR binding;0.0358510765742309!GO:0033673;negative regulation of kinase activity;0.0363210795624651!GO:0006469;negative regulation of protein kinase activity;0.0363210795624651!GO:0000096;sulfur amino acid metabolic process;0.0366292175342036!GO:0008276;protein methyltransferase activity;0.0371274708257523!GO:0005784;translocon complex;0.0376105461929368!GO:0043631;RNA polyadenylation;0.0377906465021461!GO:0046474;glycerophospholipid biosynthetic process;0.0384482652291714!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0391376495683219!GO:0010257;NADH dehydrogenase complex assembly;0.0391376495683219!GO:0033108;mitochondrial respiratory chain complex assembly;0.0391376495683219!GO:0043130;ubiquitin binding;0.0397153319259477!GO:0032182;small conjugating protein binding;0.0397153319259477!GO:0022890;inorganic cation transmembrane transporter activity;0.0401717533281254!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0404552416738958!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0410534587575699!GO:0043414;biopolymer methylation;0.0415756225394457!GO:0048699;generation of neurons;0.0420669014361468!GO:0048146;positive regulation of fibroblast proliferation;0.0422548359856444!GO:0000228;nuclear chromosome;0.0426277351496422!GO:0006607;NLS-bearing substrate import into nucleus;0.0426471523261065!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0431768959115056!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0432601305503449!GO:0005791;rough endoplasmic reticulum;0.0438232954023556!GO:0008168;methyltransferase activity;0.0438516264685269!GO:0006144;purine base metabolic process;0.0444870804608656!GO:0046467;membrane lipid biosynthetic process;0.0444870804608656!GO:0051098;regulation of binding;0.0444907212442445!GO:0022406;membrane docking;0.0444907212442445!GO:0048278;vesicle docking;0.0444907212442445!GO:0016408;C-acyltransferase activity;0.0445582254547449!GO:0051101;regulation of DNA binding;0.0445595042591391!GO:0030132;clathrin coat of coated pit;0.0445968310580369!GO:0022415;viral reproductive process;0.0451224792813161!GO:0030911;TPR domain binding;0.0453892662766133!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0458194746203675!GO:0005862;muscle thin filament tropomyosin;0.0466727148937667!GO:0051261;protein depolymerization;0.0470608205213472!GO:0042585;germinal vesicle;0.0477916857454697!GO:0045893;positive regulation of transcription, DNA-dependent;0.0478931784111308!GO:0030659;cytoplasmic vesicle membrane;0.0480189883891752!GO:0005881;cytoplasmic microtubule;0.0481202669631499!GO:0000781;chromosome, telomeric region;0.0484726031838371!GO:0007034;vacuolar transport;0.0486237552156813!GO:0030508;thiol-disulfide exchange intermediate activity;0.049192542453055 | |||
|sample_id=11494 | |sample_id=11494 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=SOX2:3.34815793636;NKX2-3_NKX2-5:2.74436713956;PRRX1,2:2.31190426673;TFDP1:2.29631260574;FOXM1:2.23379154006;IKZF2:2.18135033216;ZNF384:2.16019909792;LHX3,4:2.1411839302;POU6F1:2.05731205503;JUN:2.056103411;SOX{8,9,10}:2.04534767518;POU5F1:2.01832687505;T:1.92177332646;MZF1:1.88240860146;EGR1..3:1.86422737271;OCT4_SOX2{dimer}:1.84249393873;NKX6-1,2:1.82787163384;PAX8:1.77095291482;ADNP_IRX_SIX_ZHX:1.74845751373;MED-1{core}:1.74749048064;CDX1,2,4:1.71360223574;ONECUT1,2:1.70813130661;LEF1_TCF7_TCF7L1,2:1.70077257386;SOX17:1.63187064063;GFI1:1.51001213993;BREu{core}:1.48829484203;FOXD3:1.47979092474;VSX1,2:1.47491394275;RREB1:1.44867802192;CDC5L:1.41888887165;NR1H4:1.41477614278;MTE{core}:1.40258061595;YY1:1.39417895506;CUX2:1.39324541835;RFX1:1.36034332207;EVI1:1.34913725997;PBX1:1.33809720622;NHLH1,2:1.32779435796;NRF1:1.32496688367;NANOG:1.28462486737;PRDM1:1.28024244521;ALX1:1.26577884682;FOXP3:1.254573701;SMAD1..7,9:1.18977340907;GATA4:1.18523390789;ZFP161:1.18461528915;PAX4:1.16052355923;ZIC1..3:1.12787301236;ATF2:1.1191000575;NFY{A,B,C}:1.11754759167;ZBTB6:1.11412194545;STAT1,3:1.10528985759;RBPJ:1.08362830683;GZF1:1.04913438759;PATZ1:1.04638441481;GCM1,2:1.0366867867;ELK1,4_GABP{A,B1}:0.991236237824;GTF2I:0.984170295394;AHR_ARNT_ARNT2:0.980361649672;POU1F1:0.968876264788;PAX5:0.956714210302;POU2F1..3:0.950343438929;FOXP1:0.934666237823;POU3F1..4:0.918788830847;ATF4:0.908821215278;MAZ:0.889622576082;REST:0.880980476749;ZNF143:0.862230345634;FOXQ1:0.862067974471;CREB1:0.771712090163;GFI1B:0.734382356078;FOXL1:0.728532658625;KLF4:0.710569278114;TEF:0.710300687944;E2F1..5:0.708992217488;ARID5B:0.69413888463;PAX6:0.68272764793;TBP:0.680959875586;TFAP2B:0.673531422256;PDX1:0.66817872936;ZBTB16:0.643490357724;TGIF1:0.638620849594;MYFfamily:0.554912738224;LMO2:0.532400182218;PPARG:0.530660131721;GTF2A1,2:0.503654293354;UFEwm:0.457165154391;PAX3,7:0.44605294861;HOXA9_MEIS1:0.434427222994;HOX{A4,D4}:0.402721192679;HMGA1,2:0.388236212497;HBP1_HMGB_SSRP1_UBTF:0.378313351531;NKX2-1,4:0.36529109359;BPTF:0.318787815219;NR3C1:0.293745178622;PAX1,9:0.291222128815;HAND1,2:0.290658305426;NR6A1:0.258366021347;NKX3-1:0.253531646603;MYB:0.210654223078;DBP:0.20726522984;NFIX:0.205003929243;HIC1:0.203397683274;ATF5_CREB3:0.184387366697;FOXN1:0.179851137602;NKX2-2,8:0.169491762642;STAT5{A,B}:0.141337363878;MAFB:0.108419359559;SOX5:0.0885884732857;RFX2..5_RFXANK_RFXAP:0.0844859711764;XCPE1{core}:0.0643319353471;TLX2:0.0490450627382;SRF:0.0476711409014;SPZ1:0.0276221696913;AIRE:-0.00577573711547;NFE2L1:-0.00840517662742;ZNF423:-0.0211255474208;MTF1:-0.042322185566;ATF6:-0.0509952377282;STAT2,4,6:-0.0739278597739;MEF2{A,B,C,D}:-0.0756674352272;HOX{A5,B5}:-0.0782208651706;TOPORS:-0.101261758615;CRX:-0.120117367605;HNF1A:-0.12574358508;TLX1..3_NFIC{dimer}:-0.176463180076;FOS_FOS{B,L1}_JUN{B,D}:-0.208352887311;HSF1,2:-0.208597647933;NKX3-2:-0.23147606718;HNF4A_NR2F1,2:-0.268896579777;NFIL3:-0.284525692687;PITX1..3:-0.296165379486;ESRRA:-0.308331236101;AR:-0.318498739131;PAX2:-0.356062973862;BACH2:-0.404732748509;TAL1_TCF{3,4,12}:-0.414091088074;FOX{F1,F2,J1}:-0.420755976843;NFE2L2:-0.423775363158;NFATC1..3:-0.424047944528;GATA6:-0.445298571196;EBF1:-0.457862139276;FOSL2:-0.468882850176;NFE2:-0.488054635807;MYOD1:-0.490409985319;RUNX1..3:-0.508607308238;EP300:-0.512963500618;RORA:-0.51406974908;NFKB1_REL_RELA:-0.517814311111;TP53:-0.533491208462;XBP1:-0.536913496107;SNAI1..3:-0.542541912174;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.568313707745;EN1,2:-0.590985736878;CEBPA,B_DDIT3:-0.593190001357;SPI1:-0.616233904435;DMAP1_NCOR{1,2}_SMARC:-0.638729290599;TEAD1:-0.667276225134;MYBL2:-0.687620742316;NANOG{mouse}:-0.697194736494;SREBF1,2:-0.70519977172;SP1:-0.710017898517;SPIB:-0.721871997231;FOX{D1,D2}:-0.730360355766;NR5A1,2:-0.748809774748;IRF7:-0.779719458512;HES1:-0.852401994766;ZEB1:-0.859917178882;HMX1:-0.887819493088;bHLH_family:-0.9150432536;IRF1,2:-0.933268843096;HLF:-0.962493472877;TFCP2:-1.0177672818;FOXA2:-1.02306925074;HOX{A6,A7,B6,B7}:-1.02930688148;FOX{I1,J2}:-1.0514028415;ELF1,2,4:-1.11821736258;ESR1:-1.16761021101;ZNF238:-1.17082921476;ETS1,2:-1.21311887842;GLI1..3:-1.22580203996;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.24049554016;TFAP2{A,C}:-1.27679290557;ALX4:-1.31596032432;FOXO1,3,4:-1.42608965998;TFAP4:-1.45564968707;ZNF148:-1.49839447864;RXRA_VDR{dimer}:-1.59202907042;RXR{A,B,G}:-1.63014397007;TBX4,5:-1.69866712143;IKZF1:-1.74352159547;HIF1A:-1.80993416983 | |top_motifs=SOX2:3.34815793636;NKX2-3_NKX2-5:2.74436713956;PRRX1,2:2.31190426673;TFDP1:2.29631260574;FOXM1:2.23379154006;IKZF2:2.18135033216;ZNF384:2.16019909792;LHX3,4:2.1411839302;POU6F1:2.05731205503;JUN:2.056103411;SOX{8,9,10}:2.04534767518;POU5F1:2.01832687505;T:1.92177332646;MZF1:1.88240860146;EGR1..3:1.86422737271;OCT4_SOX2{dimer}:1.84249393873;NKX6-1,2:1.82787163384;PAX8:1.77095291482;ADNP_IRX_SIX_ZHX:1.74845751373;MED-1{core}:1.74749048064;CDX1,2,4:1.71360223574;ONECUT1,2:1.70813130661;LEF1_TCF7_TCF7L1,2:1.70077257386;SOX17:1.63187064063;GFI1:1.51001213993;BREu{core}:1.48829484203;FOXD3:1.47979092474;VSX1,2:1.47491394275;RREB1:1.44867802192;CDC5L:1.41888887165;NR1H4:1.41477614278;MTE{core}:1.40258061595;YY1:1.39417895506;CUX2:1.39324541835;RFX1:1.36034332207;EVI1:1.34913725997;PBX1:1.33809720622;NHLH1,2:1.32779435796;NRF1:1.32496688367;NANOG:1.28462486737;PRDM1:1.28024244521;ALX1:1.26577884682;FOXP3:1.254573701;SMAD1..7,9:1.18977340907;GATA4:1.18523390789;ZFP161:1.18461528915;PAX4:1.16052355923;ZIC1..3:1.12787301236;ATF2:1.1191000575;NFY{A,B,C}:1.11754759167;ZBTB6:1.11412194545;STAT1,3:1.10528985759;RBPJ:1.08362830683;GZF1:1.04913438759;PATZ1:1.04638441481;GCM1,2:1.0366867867;ELK1,4_GABP{A,B1}:0.991236237824;GTF2I:0.984170295394;AHR_ARNT_ARNT2:0.980361649672;POU1F1:0.968876264788;PAX5:0.956714210302;POU2F1..3:0.950343438929;FOXP1:0.934666237823;POU3F1..4:0.918788830847;ATF4:0.908821215278;MAZ:0.889622576082;REST:0.880980476749;ZNF143:0.862230345634;FOXQ1:0.862067974471;CREB1:0.771712090163;GFI1B:0.734382356078;FOXL1:0.728532658625;KLF4:0.710569278114;TEF:0.710300687944;E2F1..5:0.708992217488;ARID5B:0.69413888463;PAX6:0.68272764793;TBP:0.680959875586;TFAP2B:0.673531422256;PDX1:0.66817872936;ZBTB16:0.643490357724;TGIF1:0.638620849594;MYFfamily:0.554912738224;LMO2:0.532400182218;PPARG:0.530660131721;GTF2A1,2:0.503654293354;UFEwm:0.457165154391;PAX3,7:0.44605294861;HOXA9_MEIS1:0.434427222994;HOX{A4,D4}:0.402721192679;HMGA1,2:0.388236212497;HBP1_HMGB_SSRP1_UBTF:0.378313351531;NKX2-1,4:0.36529109359;BPTF:0.318787815219;NR3C1:0.293745178622;PAX1,9:0.291222128815;HAND1,2:0.290658305426;NR6A1:0.258366021347;NKX3-1:0.253531646603;MYB:0.210654223078;DBP:0.20726522984;NFIX:0.205003929243;HIC1:0.203397683274;ATF5_CREB3:0.184387366697;FOXN1:0.179851137602;NKX2-2,8:0.169491762642;STAT5{A,B}:0.141337363878;MAFB:0.108419359559;SOX5:0.0885884732857;RFX2..5_RFXANK_RFXAP:0.0844859711764;XCPE1{core}:0.0643319353471;TLX2:0.0490450627382;SRF:0.0476711409014;SPZ1:0.0276221696913;AIRE:-0.00577573711547;NFE2L1:-0.00840517662742;ZNF423:-0.0211255474208;MTF1:-0.042322185566;ATF6:-0.0509952377282;STAT2,4,6:-0.0739278597739;MEF2{A,B,C,D}:-0.0756674352272;HOX{A5,B5}:-0.0782208651706;TOPORS:-0.101261758615;CRX:-0.120117367605;HNF1A:-0.12574358508;TLX1..3_NFIC{dimer}:-0.176463180076;FOS_FOS{B,L1}_JUN{B,D}:-0.208352887311;HSF1,2:-0.208597647933;NKX3-2:-0.23147606718;HNF4A_NR2F1,2:-0.268896579777;NFIL3:-0.284525692687;PITX1..3:-0.296165379486;ESRRA:-0.308331236101;AR:-0.318498739131;PAX2:-0.356062973862;BACH2:-0.404732748509;TAL1_TCF{3,4,12}:-0.414091088074;FOX{F1,F2,J1}:-0.420755976843;NFE2L2:-0.423775363158;NFATC1..3:-0.424047944528;GATA6:-0.445298571196;EBF1:-0.457862139276;FOSL2:-0.468882850176;NFE2:-0.488054635807;MYOD1:-0.490409985319;RUNX1..3:-0.508607308238;EP300:-0.512963500618;RORA:-0.51406974908;NFKB1_REL_RELA:-0.517814311111;TP53:-0.533491208462;XBP1:-0.536913496107;SNAI1..3:-0.542541912174;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.568313707745;EN1,2:-0.590985736878;CEBPA,B_DDIT3:-0.593190001357;SPI1:-0.616233904435;DMAP1_NCOR{1,2}_SMARC:-0.638729290599;TEAD1:-0.667276225134;MYBL2:-0.687620742316;NANOG{mouse}:-0.697194736494;SREBF1,2:-0.70519977172;SP1:-0.710017898517;SPIB:-0.721871997231;FOX{D1,D2}:-0.730360355766;NR5A1,2:-0.748809774748;IRF7:-0.779719458512;HES1:-0.852401994766;ZEB1:-0.859917178882;HMX1:-0.887819493088;bHLH_family:-0.9150432536;IRF1,2:-0.933268843096;HLF:-0.962493472877;TFCP2:-1.0177672818;FOXA2:-1.02306925074;HOX{A6,A7,B6,B7}:-1.02930688148;FOX{I1,J2}:-1.0514028415;ELF1,2,4:-1.11821736258;ESR1:-1.16761021101;ZNF238:-1.17082921476;ETS1,2:-1.21311887842;GLI1..3:-1.22580203996;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.24049554016;TFAP2{A,C}:-1.27679290557;ALX4:-1.31596032432;FOXO1,3,4:-1.42608965998;TFAP4:-1.45564968707;ZNF148:-1.49839447864;RXRA_VDR{dimer}:-1.59202907042;RXR{A,B,G}:-1.63014397007;TBX4,5:-1.69866712143;IKZF1:-1.74352159547;HIF1A:-1.80993416983 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11494-119E9;search_select_hide=table117:FF:11494-119E9 | |||
}} | }} | ||
Latest revision as of 18:04, 4 June 2020
| Name: | Neurons, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12338 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12338
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12338
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.102 |
| 10 | 10 | 0.129 |
| 100 | 100 | 0.776 |
| 101 | 101 | 0.702 |
| 102 | 102 | 0.71 |
| 103 | 103 | 0.192 |
| 104 | 104 | 0.19 |
| 105 | 105 | 0.191 |
| 106 | 106 | 0.0138 |
| 107 | 107 | 0.11 |
| 108 | 108 | 0.966 |
| 109 | 109 | 0.00157 |
| 11 | 11 | 0.0261 |
| 110 | 110 | 0.168 |
| 111 | 111 | 0.427 |
| 112 | 112 | 0.148 |
| 113 | 113 | 0.772 |
| 114 | 114 | 0.0316 |
| 115 | 115 | 0.18 |
| 116 | 116 | 0.785 |
| 117 | 117 | 0.0384 |
| 118 | 118 | 0.261 |
| 119 | 119 | 0.267 |
| 12 | 12 | 0.655 |
| 120 | 120 | 0.403 |
| 121 | 121 | 0.245 |
| 122 | 122 | 0.535 |
| 123 | 123 | 0.524 |
| 124 | 124 | 0.675 |
| 125 | 125 | 0.406 |
| 126 | 126 | 0.00955 |
| 127 | 127 | 0.63 |
| 128 | 128 | 0.1 |
| 129 | 129 | 0.717 |
| 13 | 13 | 0.0206 |
| 130 | 130 | 0.488 |
| 131 | 131 | 0.477 |
| 132 | 132 | 0.994 |
| 133 | 133 | 0.618 |
| 134 | 134 | 0.812 |
| 135 | 135 | 0.781 |
| 136 | 136 | 0.00676 |
| 137 | 137 | 0.33 |
| 138 | 138 | 0.327 |
| 139 | 139 | 0.0958 |
| 14 | 14 | 0.676 |
| 140 | 140 | 0.976 |
| 141 | 141 | 0.547 |
| 142 | 142 | 0.939 |
| 143 | 143 | 0.0916 |
| 144 | 144 | 0.967 |
| 145 | 145 | 0.367 |
| 146 | 146 | 0.386 |
| 147 | 147 | 0.843 |
| 148 | 148 | 0.0621 |
| 149 | 149 | 0.136 |
| 15 | 15 | 0.12 |
| 150 | 150 | 0.298 |
| 151 | 151 | 0.408 |
| 152 | 152 | 0.0376 |
| 153 | 153 | 0.954 |
| 154 | 154 | 0.815 |
| 155 | 155 | 0.816 |
| 156 | 156 | 0.945 |
| 157 | 157 | 0.142 |
| 158 | 158 | 0.301 |
| 159 | 159 | 0.0431 |
| 16 | 16 | 0.054 |
| 160 | 160 | 0.173 |
| 161 | 161 | 0.109 |
| 162 | 162 | 0.799 |
| 163 | 163 | 0.264 |
| 164 | 164 | 0.0263 |
| 165 | 165 | 0.393 |
| 166 | 166 | 0.658 |
| 167 | 167 | 0.887 |
| 168 | 168 | 0.192 |
| 169 | 169 | 0.00927 |
| 17 | 17 | 0.0741 |
| 18 | 18 | 0.329 |
| 19 | 19 | 0.106 |
| 2 | 2 | 0.255 |
| 20 | 20 | 0.79 |
| 21 | 21 | 0.139 |
| 22 | 22 | 0.074 |
| 23 | 23 | 0.0407 |
| 24 | 24 | 0.133 |
| 25 | 25 | 0.744 |
| 26 | 26 | 0.0658 |
| 27 | 27 | 0.327 |
| 28 | 28 | 0.735 |
| 29 | 29 | 0.101 |
| 3 | 3 | 0.0527 |
| 30 | 30 | 0.559 |
| 31 | 31 | 0.768 |
| 32 | 32 | 0.00946 |
| 33 | 33 | 0.184 |
| 34 | 34 | 0.422 |
| 35 | 35 | 0.725 |
| 36 | 36 | 0.3 |
| 37 | 37 | 0.0467 |
| 38 | 38 | 0.276 |
| 39 | 39 | 0.142 |
| 4 | 4 | 0.382 |
| 40 | 40 | 0.0701 |
| 41 | 41 | 0.364 |
| 42 | 42 | 0.294 |
| 43 | 43 | 0.134 |
| 44 | 44 | 0.595 |
| 45 | 45 | 0.463 |
| 46 | 46 | 0.178 |
| 47 | 47 | 0.142 |
| 48 | 48 | 0.0763 |
| 49 | 49 | 0.211 |
| 5 | 5 | 0.258 |
| 50 | 50 | 0.367 |
| 51 | 51 | 0.516 |
| 52 | 52 | 0.328 |
| 53 | 53 | 0.477 |
| 54 | 54 | 0.349 |
| 55 | 55 | 0.183 |
| 56 | 56 | 0.378 |
| 57 | 57 | 0.533 |
| 58 | 58 | 0.171 |
| 59 | 59 | 0.0253 |
| 6 | 6 | 0.964 |
| 60 | 60 | 0.0533 |
| 61 | 61 | 0.0345 |
| 62 | 62 | 0.144 |
| 63 | 63 | 0.136 |
| 64 | 64 | 0.375 |
| 65 | 65 | 0.179 |
| 66 | 66 | 0.905 |
| 67 | 67 | 0.984 |
| 68 | 68 | 0.18 |
| 69 | 69 | 0.496 |
| 7 | 7 | 0.218 |
| 70 | 70 | 0.0236 |
| 71 | 71 | 0.018 |
| 72 | 72 | 0.175 |
| 73 | 73 | 0.024 |
| 74 | 74 | 0.896 |
| 75 | 75 | 0.0757 |
| 76 | 76 | 0.544 |
| 77 | 77 | 0.0596 |
| 78 | 78 | 0.0133 |
| 79 | 79 | 0.629 |
| 8 | 8 | 0.26 |
| 80 | 80 | 0.169 |
| 81 | 81 | 0.769 |
| 82 | 82 | 0.234 |
| 83 | 83 | 0.192 |
| 84 | 84 | 0.723 |
| 85 | 85 | 0.033 |
| 86 | 86 | 0.276 |
| 87 | 87 | 0.0252 |
| 88 | 88 | 0.479 |
| 89 | 89 | 0.432 |
| 9 | 9 | 0.278 |
| 90 | 90 | 0.81 |
| 91 | 91 | 0.819 |
| 92 | 92 | 0.108 |
| 93 | 93 | 0.557 |
| 94 | 94 | 0.279 |
| 95 | 95 | 0.0116 |
| 96 | 96 | 0.887 |
| 97 | 97 | 0.561 |
| 98 | 98 | 0.426 |
| 99 | 99 | 0.5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12338
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000348 human neuron samples
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000348 (human neuron samples)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)
