FF:11516-119H4: Difference between revisions

Latest revision as of 18:05, 4 June 2020

Name:	Renal Cortical Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11331
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of kidney, renal cortex
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC4115
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005247

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11331		CAGE		DRX008425		DRR009297

Accession ID Hg19

Library id		BAM		CTSS
CNhs11331		DRZ000722		DRZ002107

Accession ID Hg38

Library id		BAM		CTSS
CNhs11331		DRZ012072		DRZ013457

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005247

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10002.GATCAG		sRNA-Seq		DRX036996		DRR041362

Accession ID Hg19

Library id		BAM		CTSS
SRhi10002.GATCAG		DRZ007004

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.12
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0173
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0651
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.145
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0914
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.513
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.216
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.4
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.113
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11331

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.644
MA0003.1	MA0003.1	0.404
MA0004.1	MA0004.1	0.463
MA0006.1	MA0006.1	0.101
MA0007.1	MA0007.1	0.117
MA0009.1	MA0009.1	0.216
MA0014.1	MA0014.1	0.492
MA0017.1	MA0017.1	0.0514
MA0018.2	MA0018.2	0.916
MA0019.1	MA0019.1	0.185
MA0024.1	MA0024.1	0.851
MA0025.1	MA0025.1	0.574
MA0027.1	MA0027.1	0.667
MA0028.1	MA0028.1	0.0135
MA0029.1	MA0029.1	0.311
MA0030.1	MA0030.1	0.31
MA0031.1	MA0031.1	0.431
MA0035.2	MA0035.2	0.024
MA0038.1	MA0038.1	0.0184
MA0039.2	MA0039.2	0.0313
MA0040.1	MA0040.1	0.509
MA0041.1	MA0041.1	0.303
MA0042.1	MA0042.1	0.994
MA0043.1	MA0043.1	0.382
MA0046.1	MA0046.1	1.00953e-14
MA0047.2	MA0047.2	0.828
MA0048.1	MA0048.1	0.597
MA0050.1	MA0050.1	2.82159e-4
MA0051.1	MA0051.1	0.0507
MA0052.1	MA0052.1	0.0771
MA0055.1	MA0055.1	0.0572
MA0057.1	MA0057.1	0.192
MA0058.1	MA0058.1	0.507
MA0059.1	MA0059.1	0.881
MA0060.1	MA0060.1	4.62066e-7
MA0061.1	MA0061.1	0.42
MA0062.2	MA0062.2	4.74569e-5
MA0065.2	MA0065.2	0.0538
MA0066.1	MA0066.1	0.696
MA0067.1	MA0067.1	0.138
MA0068.1	MA0068.1	0.663
MA0069.1	MA0069.1	0.51
MA0070.1	MA0070.1	0.0153
MA0071.1	MA0071.1	0.716
MA0072.1	MA0072.1	0.788
MA0073.1	MA0073.1	0.948
MA0074.1	MA0074.1	0.886
MA0076.1	MA0076.1	1.07352e-4
MA0077.1	MA0077.1	0.00966
MA0078.1	MA0078.1	0.613
MA0079.2	MA0079.2	0.46
MA0080.2	MA0080.2	0.00759
MA0081.1	MA0081.1	0.0586
MA0083.1	MA0083.1	0.0269
MA0084.1	MA0084.1	0.16
MA0087.1	MA0087.1	0.833
MA0088.1	MA0088.1	0.698
MA0090.1	MA0090.1	0.00242
MA0091.1	MA0091.1	0.682
MA0092.1	MA0092.1	0.905
MA0093.1	MA0093.1	0.469
MA0099.2	MA0099.2	4.85919e-8
MA0100.1	MA0100.1	0.23
MA0101.1	MA0101.1	0.148
MA0102.2	MA0102.2	0.0551
MA0103.1	MA0103.1	3.27664e-7
MA0104.2	MA0104.2	0.601
MA0105.1	MA0105.1	0.688
MA0106.1	MA0106.1	0.087
MA0107.1	MA0107.1	0.0427
MA0108.2	MA0108.2	3.28222e-8
MA0111.1	MA0111.1	0.253
MA0112.2	MA0112.2	0.387
MA0113.1	MA0113.1	0.821
MA0114.1	MA0114.1	0.101
MA0115.1	MA0115.1	0.51
MA0116.1	MA0116.1	0.57
MA0117.1	MA0117.1	0.158
MA0119.1	MA0119.1	0.794
MA0122.1	MA0122.1	0.388
MA0124.1	MA0124.1	0.495
MA0125.1	MA0125.1	0.227
MA0131.1	MA0131.1	0.108
MA0135.1	MA0135.1	0.164
MA0136.1	MA0136.1	0.00351
MA0137.2	MA0137.2	0.17
MA0138.2	MA0138.2	0.79
MA0139.1	MA0139.1	0.696
MA0140.1	MA0140.1	0.306
MA0141.1	MA0141.1	0.564
MA0142.1	MA0142.1	0.869
MA0143.1	MA0143.1	0.667
MA0144.1	MA0144.1	0.979
MA0145.1	MA0145.1	0.0544
MA0146.1	MA0146.1	0.119
MA0147.1	MA0147.1	0.641
MA0148.1	MA0148.1	0.552
MA0149.1	MA0149.1	0.261
MA0150.1	MA0150.1	0.902
MA0152.1	MA0152.1	0.0472
MA0153.1	MA0153.1	4.2556e-8
MA0154.1	MA0154.1	0.372
MA0155.1	MA0155.1	0.11
MA0156.1	MA0156.1	0.00801
MA0157.1	MA0157.1	0.122
MA0159.1	MA0159.1	0.315
MA0160.1	MA0160.1	0.358
MA0162.1	MA0162.1	0.106
MA0163.1	MA0163.1	0.296
MA0164.1	MA0164.1	0.651
MA0258.1	MA0258.1	0.681
MA0259.1	MA0259.1	0.234

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11331

Novel motif	Logo	P-value
1	1	0.587
10	10	0.0666
100	100	0.813
101	101	0.0554
102	102	0.493
103	103	0.468
104	104	0.58
105	105	0.0708
106	106	0.0829
107	107	0.0148
108	108	0.493
109	109	0.217
11	11	0.663
110	110	0.681
111	111	0.993
112	112	0.808
113	113	0.442
114	114	0.095
115	115	0.958
116	116	0.846
117	117	0.427
118	118	0.988
119	119	0.168
12	12	0.76
120	120	0.541
121	121	0.959
122	122	0.155
123	123	0.0841
124	124	0.241
125	125	0.419
126	126	0.275
127	127	0.279
128	128	0.196
129	129	0.0194
13	13	0.381
130	130	0.492
131	131	0.423
132	132	0.18
133	133	0.147
134	134	0.668
135	135	0.788
136	136	0.757
137	137	0.0402
138	138	0.278
139	139	0.104
14	14	0.517
140	140	0.284
141	141	0.53
142	142	0.787
143	143	0.886
144	144	0.471
145	145	0.202
146	146	0.0191
147	147	0.582
148	148	0.0991
149	149	0.191
15	15	0.965
150	150	0.448
151	151	0.623
152	152	0.0488
153	153	0.202
154	154	0.165
155	155	0.945
156	156	0.0552
157	157	0.253
158	158	0.929
159	159	0.787
16	16	0.415
160	160	0.124
161	161	0.802
162	162	0.156
163	163	0.787
164	164	0.205
165	165	0.235
166	166	0.567
167	167	0.122
168	168	0.93
169	169	0.242
17	17	0.288
18	18	0.454
19	19	0.669
2	2	0.207
20	20	0.816
21	21	0.779
22	22	0.295
23	23	0.219
24	24	0.968
25	25	0.614
26	26	0.389
27	27	0.303
28	28	0.614
29	29	0.601
3	3	0.462
30	30	0.0338
31	31	0.431
32	32	0.495
33	33	0.214
34	34	0.233
35	35	0.161
36	36	0.902
37	37	0.671
38	38	0.399
39	39	0.205
4	4	0.124
40	40	0.00778
41	41	0.505
42	42	0.579
43	43	0.834
44	44	0.868
45	45	0.0817
46	46	0.675
47	47	0.977
48	48	0.779
49	49	0.984
5	5	0.521
50	50	0.243
51	51	0.491
52	52	0.316
53	53	0.569
54	54	0.417
55	55	0.134
56	56	0.313
57	57	0.94
58	58	0.395
59	59	0.114
6	6	0.218
60	60	0.403
61	61	0.366
62	62	0.247
63	63	0.301
64	64	0.549
65	65	0.0808
66	66	0.108
67	67	0.261
68	68	0.849
69	69	0.0428
7	7	0.984
70	70	0.958
71	71	0.249
72	72	0.809
73	73	0.0753
74	74	0.171
75	75	0.686
76	76	0.0708
77	77	0.00643
78	78	0.735
79	79	0.426
8	8	0.627
80	80	0.747
81	81	0.144
82	82	0.373
83	83	0.948
84	84	0.768
85	85	0.851
86	86	0.577
87	87	0.187
88	88	0.552
89	89	0.264
9	9	0.594
90	90	0.0315
91	91	0.895
92	92	0.707
93	93	0.253
94	94	0.677
95	95	0.63
96	96	0.795
97	97	0.691
98	98	0.783
99	99	0.0186

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11331

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000152 human renal cortical epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000152 (human renal cortical epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005247
-|accession_numbers=CAGE;DRX008425;DRR009297;DRZ000722;DRZ002107
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005247
+|accession_numbers=CAGE;DRX008425;DRR009297;DRZ000722;DRZ002107;DRZ012072;DRZ013457
+|accession_numbers_RNASeq=sRNA-Seq;DRX036996;DRR041362;DRZ007004
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.10!125.43!PAX8;;chr1:201979743..201979762,+!p1@ELF3!2.08!120.02!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.03!105.58!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.00!99.72!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.84!68.13!HNF1B;;chr1:209979467..209979494,-!p1@IRF6!1.83!74.00!IRF6;;chr17:46682321..46682362,-!p1@HOXB6!1.67!46.02!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!1.47!74.45!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.74!TFAP2A;;chr6:34204921..34204939,+!p3@HMGA1!1.39!674.09!HMGA1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.38!23.01!LHX1;;chr10:8096631..8096660,+!p1@GATA3!1.29!22.11!GATA3;;chr11:34642612..34642646,+!p1@EHF!1.28!18.05!EHF;;chr17:46622205..46622218,-!p3@HOXB2!1.27!20.30!HOXB2;;chr1:209979411..209979433,-!p2@IRF6!1.25!16.69!IRF6;;chr10:8096772..8096787,+!p2@GATA3!1.21!18.05!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.21!15.34!POU3F3;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.44!HOXD8;;chr6:34204672..34204692,+!p1@HMGA1!1.18!1564.31!HMGA1;;chr6:10415484..10415508,-!p3@TFAP2A!1.18!13.99!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!1.18!13.99!HOXA9;;chr16:86600426..86600441,+!p1@FOXC2!1.15!32.49!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.12!56.40!HMGA2;;chr21:38071430..38071456,+!p1@SIM2!1.12!12.18!SIM2;;chr7:27205106..27205134,-!p2@HOXA9!1.12!12.18!HOXA9;;chr12:66218212..66218244,+!p5@HMGA2!1.11!17.15!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!1.10!13.08!HOXB2;;chr10:102505493..102505546,+!p2@PAX2!1.10!11.73!PAX2;;chr7:27224795..27224840,-!p2@HOXA11!1.09!11.28!HOXA11;;chr1:6479968..6479986,-!p1@HES2!1.09!11.28!HES2;;chr12:66218003..66218018,+!p9@HMGA2!1.08!13.54!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.07!10.83!HOXB6;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.15!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.06!10.38!IRX2;;chr17:41623692..41623715,-!p1@ETV4!1.04!42.86!ETV4;;chr11:65554528..65554546,+!p1@OVOL1!1.04!9.93!OVOL1;;chr2:5832508..5832524,+!p1@SOX11!1.04!9.93!SOX11;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.62!EPAS1;;chr17:46622229..46622257,-!p6@HOXB2!1.01!10.83!HOXB2;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.02!NFE2L1;;chr17:70117153..70117174,+!p1@SOX9!0.99!93.40!SOX9;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.44!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.54!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.96!13.08!ZFP64;;chr7:27192185..27192209,-!p1@HOXA3!0.96!8.12!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.96!8.12!HOXA11;;chr2:177053386..177053402,+!p1@HOXD1!0.96!8.12!HOXD1;;chr4:299227..299272,-!p1@ZNF732!0.96!8.12!ZNF732;;chr6:21593973..21593988,+!p1@SOX4!0.92!277.04!SOX4;;chr12:66218183..66218209,+!p4@HMGA2!0.92!14.44!HMGA2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.22!TFCP2L1;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.89!C11orf9;;chr12:54378923..54378966,+!p1@HOXC10!0.89!6.77!HOXC10;;chr7:27153454..27153469,-!p2@HOXA3!0.89!6.77!HOXA3;;chr13:73633131..73633149,+!p1@KLF5!0.88!74.45!KLF5;;chr20:31350184..31350200,+!p1@DNMT3B!0.87!13.99!DNMT3B;;chr1:24646002..24646013,+!p3@GRHL3!0.86!6.32!GRHL3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.86!6.32!HOXC5;;chr14:38064429..38064486,-!p1@FOXA1!0.86!6.32!FOXA1;;chr6:50786591..50786614,+!p1@TFAP2B!0.86!6.32!TFAP2B;;chr16:86600870..86600921,+!p2@FOXC2!0.86!6.32!FOXC2;;chr17:46703528..46703549,-!p5@HOXB9!0.86!6.32!HOXB9;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.02!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!0.85!9.02!BMP2;;chr17:46667594..46667619,-!p1@HOXB3!0.84!5.87!HOXB3;;chr17:46692457..46692484,-!p2@HOXB8!0.84!5.87!HOXB8;;chr17:7493405..7493419,-!p1@SOX15!0.84!5.87!SOX15;;chr10:102505327..102505344,+!p1@PAX2!0.84!5.87!PAX2;;chr7:27196217..27196246,-!p2@HOXA7!0.84!5.87!HOXA7;;chr17:46622070..46622109,-!p1@HOXB2!0.83!13.54!HOXB2;;chr12:3069037..3069119,+!p2@TEAD4!0.82!20.76!TEAD4;;chr12:54447599..54447630,+!p3@HOXC4!0.81!6.77!HOXC4;;chr11:65554563..65554576,+!p2@OVOL1!0.81!5.41!OVOL1;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.41!IRX1;;chr21:38071403..38071428,+!p2@SIM2!0.81!5.41!SIM2;;chr16:51185318..51185348,-!p2@SALL1!0.81!5.41!SALL1;;chr12:66218836..66218888,+!p1@HMGA2!0.80!54.14!HMGA2;;chr2:239148671..239148686,-!p1@HES6!0.80!20.76!HES6;;chr17:46622114..46622138,-!p4@HOXB2!0.79!8.12!HOXB2;;chr11:65667846..65667868,-!p1@FOSL1!0.78!146.19!FOSL1;;chr17:46687959..46688007,-!p2@HOXB7!0.78!7.22!HOXB7;;chr17:46703826..46703845,-!p3@HOXB9!0.78!4.96!HOXB9;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.78!4.96!POU3F3;;chr2:176973498..176973524,+!p1@HOXD10!0.78!4.96!HOXD10;;chr3:111314186..111314204,-!p1@ZBED2!0.78!4.96!ZBED2;;chr5:2751785..2751808,-!p2@IRX2!0.78!4.96!IRX2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.77!14.44!ZC3H7B;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.44!PCBP4;;chr17:41622834..41622883,-!p6@ETV4!0.76!5.87!ETV4;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.37!MYBL2;;chr10:104155480..104155534,+!p2@NFKB2!0.75!32.94!NFKB2;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.22!HOXB4;;chr17:41622765..41622821,-!p2@ETV4!0.74!7.22!ETV4;;chr10:8095593..8095625,+!p3@GATA3!0.74!5.41!GATA3;;chr10:119302232..119302265,+!p1@EMX2!0.74!4.51!EMX2;;chr16:51185172..51185197,-!p1@SALL1!0.74!4.51!SALL1;;chr16:52581025..52581072,-!p1@TOX3!0.74!4.51!TOX3;;chr17:36105074..36105086,-!p2@HNF1B!0.74!4.51!HNF1B;;chr6:1610293..1610310,+!p1@FOXC1!0.73!7.67!FOXC1;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.32!TEAD2;;chr18:3450161..3450183,+!p1@TGIF1!0.72!162.43!TGIF1;;chr17:41623009..41623053,-!p4@ETV4!0.72!7.22!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.96!BNC1;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.41!HMGA2;;chr7:44143925..44143970,+!p1@AEBP1!0.70!101.97!AEBP1;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.75!SREBF2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.41!BCL3;;chr1:24645832..24645853,+!p1@GRHL3!0.70!4.06!GRHL3;;chr1:24645921..24645973,+!p2@GRHL3!0.70!4.06!GRHL3;;chr2:176972000..176972025,+!p4@HOXD11!0.70!4.06!HOXD11;;chr10:119302645..119302712,+!p3@EMX2!0.70!4.06!EMX2;;chr7:27213893..27213954,-!p1@HOXA10!0.70!4.06!HOXA10;;chr7:27219833..27219845,-!p7@HOXA10!0.70!4.06!HOXA10;;chr17:46675619..46675642,-!p5@HOXB6!0.70!4.06!HOXB6;;chr19:45504688..45504782,+!p1@RELB!0.69!27.07!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.68!26.17!NFKB2;;chr19:45252008..45252024,+!p2@BCL3!0.68!13.99!BCL3;;chr17:46621937..46621966,-!p2@HOXB2!0.68!11.28!HOXB2;;chr8:128748308..128748324,+!p2@MYC!0.67!118.21!MYC;;chr20:42295713..42295738,+!p2@MYBL2!0.67!24.82!MYBL2;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.87!ETV4;;chr11:63684602..63684664,-!p1@RCOR2!0.66!7.67!RCOR2;;chr15:80696703..80696754,+!p1@ARNT2!0.66!4.96!ARNT2;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.61!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.66!3.61!HOXB8;;chr5:3595977..3595999,+!p1@IRX1!0.66!3.61!IRX1;;chr6:10419824..10419840,-!p9@TFAP2A!0.66!3.61!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!0.66!3.61!TCF21;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.61!HOXA7;;chr7:27219849..27219867,-!p6@HOXA10!0.66!3.61!HOXA10;;chr2:16080659..16080685,+!p1@MYCN!0.66!3.61!MYCN;;chr2:177001290..177001315,+!p1@HOXD3!0.66!3.61!HOXD3;;chr2:5832493..5832507,+!p2@SOX11!0.66!3.61!SOX11;;chr7:26191809..26191890,+!p1@NFE2L3!0.65!19.85!NFE2L3;;chr6:21597765..21597779,+!p2@SOX4!0.64!31.58!SOX4;;chr5:76383133..76383186,-!p2@ZBED3!0.64!7.67!ZBED3;;chr19:17356436..17356481,-!p3@NR2F6!0.64!6.32!NR2F6;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.47!MLLT11;;chr6:44233252..44233296,-!p1@NFKBIE!0.63!37.90!NFKBIE;;chr19:49865646..49865718,-!p1@TEAD2!0.63!33.39!TEAD2;;chr17:7492684..7492778,-!p2@SOX15!0.63!7.67!SOX15;;chr12:80084303..80084332,-!p1@PAWR!0.62!22.11!PAWR;;chr8:60031619..60031676,-!p1@TOX!0.62!7.67!TOX;;chr1:247171347..247171366,-!p2@ZNF695!0.62!6.32!ZNF695;;chr10:119303078..119303169,+!p2@EMX2!0.62!3.16!EMX2;;chr17:46622175..46622186,-!p12@HOXB2!0.62!3.16!HOXB2;;chr17:46692318..46692362,-!p5@HOXB8!0.62!3.16!HOXB8;;chr2:176969228..176969260,+!p1@HOXD11!0.62!3.16!HOXD11;;chr3:69915385..69915438,+!p3@MITF!0.62!3.16!MITF;;chr6:1312155..1312187,+!p2@FOXQ1!0.62!3.16!FOXQ1;;chr7:27183291..27183324,-!p1@HOXA5!0.62!3.16!HOXA5;;chr11:65667884..65667895,-!p2@FOSL1!0.61!13.99!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.61!HOXB6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!31.58!PPP1R13L;;chr3:52001396..52001425,-!p4@PCBP4!0.60!5.87!PCBP4;;chr12:80084137..80084165,-!p10@PAWR!0.60!4.06!PAWR;;chr6:34204642..34204664,+!p2@HMGA1!0.59!476.02!HMGA1;;chr20:42136308..42136358,+!p2@L3MBTL1!0.59!4.06!L3MBTL;;chr3:52001448..52001478,-!p2@PCBP4!0.58!48.28!PCBP4;;chr12:80084737..80084763,-!p3@PAWR!0.58!12.63!PAWR;;chr14:21994337..21994442,-!p1@SALL2!0.58!9.02!SALL2;;chr18:74072572..74072588,-!p2@ZNF516!0.58!4.96!ZNF516;;chr1:935467..935484,-!p1@HES4!0.57!14.44!HES4;;chr7:28448965..28448994,+!p2@CREB5!0.57!11.28!CREB5;;chr20:50808667..50808729,-!p3@ZFP64!0.57!5.87!ZFP64;;chr22:30162893..30162907,-!p2@ZMAT5!0.57!3.61!ZMAT5;;chr3:69915369..69915381,+!p4@MITF!0.57!2.71!MITF;;chr17:41622982..41623001,-!p11@ETV4!0.57!2.71!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.57!2.71!ETV4;;chr17:46131916..46131952,+!p7@NFE2L1!0.57!2.71!NFE2L1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.71!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.57!2.71!HOXB8;;chr17:46703436..46703460,-!p7@HOXB9!0.57!2.71!HOXB9;;chr12:66218420..66218439,+!p12@HMGA2!0.57!2.71!HMGA2;;chr5:3595934..3595957,+!p2@IRX1!0.57!2.71!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.57!2.71!TFAP2A;;chr7:101917407..101917443,+!p3@CUX1!0.57!2.71!CUX1;;chr8:67874805..67874831,-!p1@TCF24!0.57!2.71!TCF24;;chrY:21906594..21906622,-!p1@KDM5D!0.57!2.71!KDM5D;;chr8:128749984..128750033,+!p4@MYC!0.56!11.28!MYC;;chr19:36545291..36545314,-!p2@THAP8!0.56!7.67!THAP8;;chr19:53496768..53496799,-!p1@ZNF702P!0.56!4.51!ZNF702P;;chr19:58987711..58987729,+!p2@ZNF446!0.56!4.51!ZNF446;;chr17:40440225..40440268,+!p3@STAT5A!0.56!3.61!STAT5A;;chr3:12330560..12330579,+!p1@PPARG!0.56!3.16!PPARG;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!332.08!ZFP36L1;;chr22:42229100..42229146,+!p1@SR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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11516-119H4
 |is_a=EFO:0002091;;FF:0000152
 |is_obsolete=
 |library_id=CNhs11331
-|library_id_phase_based=1:CNhs11331
+|library_id_phase_based=2:CNhs11331
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11516
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GATCAG.11516
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11516
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GATCAG.11516
 |name=Renal Cortical Epithelial Cells, donor1
 |namespace=FANTOM5
@@ Line 50: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11331,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10002,,,
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@@ Line 66: / Line 81: @@
 |rna_tube_id=119H4
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10002.GATCAG
 |sample_age=
 |sample_category=primary cells
@@ Line 89: / Line 105: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11516-119H4;search_select_hide=table117:FF:11516-119H4
 }}

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FF:11516-119H4: Difference between revisions

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Latest revision as of 18:05, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0