FF:11528-119I7: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (26 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004929 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004929 | ||
|accession_numbers=CAGE;DRX008441;DRR009313;DRZ000738;DRZ002123;DRZ012088;DRZ013473 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037264;DRR041630;DRZ007272 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0005388,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0001781,UBERON:0001032,UBERON:0010317,UBERON:0001782,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000255,CL:0000149,CL:0002586 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000158 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs11338.11528-119I7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs11338.11528-119I7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs11338.11528-119I7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs11338.11528-119I7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs11338.11528-119I7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11528-119I7 | |id=FF:11528-119I7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000158 | ||
|is_obsolete= | |||
|library_id=CNhs11338 | |||
|library_id_phase_based=2:CNhs11338 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11528 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.CGTACG.11528 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11528 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.CGTACG.11528 | |||
|name=Retinal Pigment Epithelial Cells, donor1 | |name=Retinal Pigment Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11338,LSID768,release014,COMPLETED | |profile_hcage=CNhs11338,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0616014322868925,0,0,0,0,0.0587499841140617,0,0.0201891532800955,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.107576985842449,0,0,0,0,0,0,0,0,0.0853189859873895,0,0,0,0,0,0.0293740154089192,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.123202864573785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.001642887218406,0.0925570530520352,0,0,0,0.100945796046396,-0.0291979856884195,0,0.123202864573785,0,0,-0.0980353512377064,-0.0768757685140025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0218382500411467,0.122359239919693,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0.123202864573785,0,0,-0.123976010711779,0.101731225578091,0.247245369606556,0.154036142950138,0,0,0.0343214449576045,0,0.123202864573785,0,0,0,0,0,0,0,-0.00491700237877921,0,-0.0504125515893149,0,0.123202864573785,0,0,-0.0186252810838506,-0.305472230898407,0,0.0077413558579395,0.15072375312308,0,0,0,0,-0.121465026597519,0,-0.120879483793741,-0.0827201683234173,0.219068014200448,-0.0278856833406592,-0.04680465889238,0,0,0,-0.170174024017505,-0.297047325034324,0,0,-0.060178419464981,0.0290274564630385,0,0,-0.267841716977849,0.63145862984902,-0.153788997056886,0.183161107397471,0,-0.1078657913965,0,0,0,0,0,0,0,0,0,0,0.123202864573785,0.15288360820226,-0.107920582478521,0,0.123202864573785,0.123202864573785,0,-0.0951469912932076,0,0.0107064757561997,-0.00928732194166831,-0.0505639622844131,0,0.546175233653497,0,-0.00483844153630369,0.124605504410174,0.066789735920072,0.100945796046396,0.370598861886201,0.231634253642622,0.01763557133643,-0.124746561572837,0.261720431334819,0.0308032791593962,0.0925570530520352,0.128450723563919,0.0909946689032184,0.108081664687877,0,0,-0.0775089264793031,-0.24714307598009,0,0,-0.192563429003164,0.0224875594742651,0.0584925675111898,-0.212726449226969,0.073110803050461,0.0714894866248903,0.258307281162432,0.174022176952425,0,-0.101230331207241,0.123202864573785,0,0.00818052381913481,-0.0381734535131667,0.420608136645961,0.202152074060843,0.0454011630197329,0.0340232494463587,0.0548586034964173,0,0.323441993544112,0.0834324944292804,0.363998834014899,0.0407850460247801,0.3359002310324,0,0,0,0,0.123202864573785,0.181706900557879,-0.320424128829719,-0.232855561555545,0,0.152756394402259,0,0.00112963000961996,0,0.0530391617087,-0.0380675031584297,0.0659246816536062,0.139196049899887,0,0.114110868550905,-0.224185114283695,0.035478380850533,-0.058395971376839,0.0647560377619603,-0.257995179111312,0.0129509366082388,0.221301395493739,-0.316463110125808,0.256530110714213,0.13094118172516,0,-0.0444273850110536,-0.207021376957106,0.014174264824089,0.122466043002292,0.123202864573785,-0.199929831016782,0,-0.641629930477274,0,0.0347113312369418,0.231904071200403,-0.220221360380238,-0.767689616214357,0,0.315236104226083,0.824841285367639,0.0472420066483015,0.0751965511718105,0,0.123202864573785,0.322109671329779,-0.13849373679313,0.22934934477153,0.0800785575212529,0,0.0691949692629114,0,0,0.222044460227358,-0.112273173190603,0,0.226554975551572,-0.0500006844939441,0.191541267579948,0.181580212038675,0,0,0.472780717081735,0,0,0.80785959780236,0.0928920748980626,0.277200511148193,-0.253326341486756,0,0.381786292001705,0,0,-0.177527765965176,0,0.184145159620816,0,0,0.009119059029846,0,0,0.346695306995575,0,0.0409726867744451,0,0,0,0,0.0616014322868925,0,0,-0.0617478634209763,-0.231630465642662,0,0.363998834014899,0,0.123202864573785,0,0,0,-0.0307111269848459,0,0.123202864573785,-0.40389048925605,0.0537236306175117,0.000185448897365215,0.123202864573785,0,0,0,-0.0925205379796892,-0.203236562094724,0,-0.131862706497632,0.123202864573785,0,0,0,0.0370618747845741,0,0,0,0,-0.057730457053664,0.184408480725132,0,0,0,-0.153751537028005,0,0,0,0,-0.380615000680286,0,0,0.0315974803597636,0,0.137490304964647,0.714175429228401,0,0.102659167986079,0.545085095042543,0.897397410963342,0,0.123202864573785,-0.261347131789888,0,0,-0.404485691784228,0.0408326416081192,0,0.190024701480111,0,0,0,0,0,0,-0.0911116478259701,0,0,0,0,0,0,0,0,0,0,0,-0.13575803448306,0.126843957541937,0,0,0,0,0,0,0,0.0374954092079894,-0.0306993850962258,0,0,0,0,0,0.123202864573785,0,0,-0.252357925462794,0,0,0,0,0,-0.0969923612426051,0,0,0,0.123202864573785,-0.564807121153884,0,0,0.0201891532800955,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.297833696734026,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.018406479784629,0,0.0587499841140617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352557562528627,0,-0.0561283864020897,0.0194190988577791,0,0,-0.0218203660368071,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.015567421773582,0.212018333137732,0.0364137897317537,0,0,0,0.156422414113779,0,0,0.084458498797065,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219068014200448,0,0,0,0,0,0,-0.0340113632754165,0.123202864573785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.107877581476785,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.0388262323437584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.0258270655149604,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.194825614149169,0,0,0,0,0,0,0,0,0,0,0,0,0.236231106323483,0,0,0,0,0,0,0,0,0,0,0.170637971974779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0422001366524861,0.122359239919693,0,0,0,0,0,0.123202864573785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.245190069007174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.401328404549156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0.123202864573785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0201609556123275,0.0247630027209421,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219068014200448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0.219068014200448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0434608659088074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0988376602152185,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.148775642736805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0591044092977873,0,0,-0.0422874684771159,0,0,0.162643060666149,0,0,0,0,0,0.0395811118049084,0,0,0,0,0,0,0,0.0616014322868925,0,0,-0.0400762477245316,0,0,-0.0757370701370017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,-0.120920794925211,-0.273871823948229,0,0,-0.200847948121433,0,0,-0.0367311208382308,0,0,-0.174992895090299,-0.342351253479366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.269475635594569,0.219068014200448,-0.0148374203355254,0,0,0.175285436410564,0,0,0,0.201591878100023 | |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC6545 | |rna_catalog_number=SC6545 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=119I7 | |rna_tube_id=119I7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.CGTACG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.78526977690568e-218!GO:0005737;cytoplasm;1.96586062279333e-197!GO:0043226;organelle;5.03651667100572e-174!GO:0043229;intracellular organelle;5.67758642352061e-174!GO:0043231;intracellular membrane-bound organelle;1.85078233429793e-169!GO:0043227;membrane-bound organelle;6.54862748528738e-169!GO:0044444;cytoplasmic part;5.63698803215055e-142!GO:0044422;organelle part;2.65841302296711e-135!GO:0044446;intracellular organelle part;2.84564164055702e-134!GO:0032991;macromolecular complex;4.8140855664239e-87!GO:0030529;ribonucleoprotein complex;2.99843775490667e-80!GO:0044237;cellular metabolic process;3.51663101980247e-79!GO:0044238;primary metabolic process;1.71741942427004e-76!GO:0005515;protein binding;2.95177620560101e-71!GO:0005739;mitochondrion;1.24997609535678e-70!GO:0043233;organelle lumen;2.47821395642502e-65!GO:0031974;membrane-enclosed lumen;2.47821395642502e-65!GO:0043170;macromolecule metabolic process;1.69340808878162e-63!GO:0003723;RNA binding;2.74228087127972e-61!GO:0044428;nuclear part;3.6357056989437e-59!GO:0005634;nucleus;1.03564093469236e-54!GO:0005840;ribosome;1.76607804421755e-53!GO:0031090;organelle membrane;1.54526750152923e-50!GO:0016043;cellular component organization and biogenesis;1.59634905319664e-47!GO:0006412;translation;1.84008710451037e-47!GO:0009058;biosynthetic process;4.30404448209325e-47!GO:0003735;structural constituent of ribosome;6.89546348844431e-47!GO:0019538;protein metabolic process;8.97981446195458e-46!GO:0044249;cellular biosynthetic process;1.38077366963112e-44!GO:0044429;mitochondrial part;1.69904798913157e-44!GO:0043234;protein complex;4.34179387527737e-43!GO:0033279;ribosomal subunit;2.37185388320623e-41!GO:0044260;cellular macromolecule metabolic process;4.29286129903552e-41!GO:0044267;cellular protein metabolic process;1.84398717438466e-40!GO:0006396;RNA processing;1.70521652582249e-39!GO:0031967;organelle envelope;1.00548418518238e-38!GO:0031975;envelope;2.53378177227992e-38!GO:0033036;macromolecule localization;2.83928884871832e-38!GO:0009059;macromolecule biosynthetic process;4.66561567079838e-38!GO:0015031;protein transport;4.94081633758177e-38!GO:0031981;nuclear lumen;1.8514227284781e-37!GO:0005829;cytosol;6.82064928333036e-36!GO:0008104;protein localization;1.64666668448399e-35!GO:0006996;organelle organization and biogenesis;4.62493958875168e-35!GO:0045184;establishment of protein localization;1.17231227615891e-34!GO:0043228;non-membrane-bound organelle;1.86420164241805e-33!GO:0043232;intracellular non-membrane-bound organelle;1.86420164241805e-33!GO:0046907;intracellular transport;3.32620170942772e-32!GO:0043283;biopolymer metabolic process;5.07501010067142e-31!GO:0016071;mRNA metabolic process;6.19143897655088e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.58823435462954e-30!GO:0065003;macromolecular complex assembly;6.63790944189411e-30!GO:0005740;mitochondrial envelope;3.29913197999351e-29!GO:0010467;gene expression;4.53824250041983e-28!GO:0008380;RNA splicing;6.04772525221535e-28!GO:0019866;organelle inner membrane;7.30082005648262e-28!GO:0031966;mitochondrial membrane;1.80526659193895e-27!GO:0022607;cellular component assembly;2.02945927664198e-27!GO:0005743;mitochondrial inner membrane;1.97751019037258e-26!GO:0006397;mRNA processing;3.66634631649747e-26!GO:0006886;intracellular protein transport;9.31712696938061e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.00978542652892e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.05473816745899e-25!GO:0048770;pigment granule;1.97779979006246e-24!GO:0042470;melanosome;1.97779979006246e-24!GO:0044445;cytosolic part;3.01825088217836e-24!GO:0006259;DNA metabolic process;1.02901999249819e-22!GO:0005654;nucleoplasm;1.14215742724373e-21!GO:0006119;oxidative phosphorylation;1.55196051605511e-21!GO:0015935;small ribosomal subunit;1.95186728598551e-21!GO:0015934;large ribosomal subunit;5.78932327085401e-21!GO:0005681;spliceosome;8.21644339452302e-21!GO:0012505;endomembrane system;2.00298994778412e-20!GO:0005783;endoplasmic reticulum;1.71156984445678e-19!GO:0044455;mitochondrial membrane part;2.82829512341644e-19!GO:0051649;establishment of cellular localization;2.89875625472301e-19!GO:0051641;cellular localization;6.71478665105623e-19!GO:0044451;nucleoplasm part;1.03029862447309e-18!GO:0031980;mitochondrial lumen;1.40521674021547e-18!GO:0005759;mitochondrial matrix;1.40521674021547e-18!GO:0006457;protein folding;4.84476036624135e-18!GO:0007049;cell cycle;1.24137775511409e-17!GO:0000166;nucleotide binding;1.29421766710899e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.3926799531642e-16!GO:0044432;endoplasmic reticulum part;2.4959692876205e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.90098345024812e-16!GO:0051186;cofactor metabolic process;2.90965441402844e-16!GO:0016462;pyrophosphatase activity;3.19148192782734e-16!GO:0005730;nucleolus;3.72304275976178e-16!GO:0005746;mitochondrial respiratory chain;4.24099137990017e-16!GO:0016874;ligase activity;4.51216005942608e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.79273254204402e-16!GO:0008134;transcription factor binding;1.84065979645954e-15!GO:0005794;Golgi apparatus;4.50335880424026e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.01728965188208e-15!GO:0022618;protein-RNA complex assembly;5.54644895577115e-15!GO:0017111;nucleoside-triphosphatase activity;8.05810063975509e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.16210734027229e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.77519368289005e-14!GO:0003954;NADH dehydrogenase activity;1.77519368289005e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.77519368289005e-14!GO:0005761;mitochondrial ribosome;3.62671300658511e-14!GO:0000313;organellar ribosome;3.62671300658511e-14!GO:0044265;cellular macromolecule catabolic process;6.88096213650681e-14!GO:0051082;unfolded protein binding;1.71957208524371e-13!GO:0006605;protein targeting;4.49952839580619e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.89226656230797e-13!GO:0042773;ATP synthesis coupled electron transport;6.89226656230797e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.0646491922558e-13!GO:0006732;coenzyme metabolic process;7.52792791749535e-13!GO:0022402;cell cycle process;8.9100062603011e-13!GO:0006512;ubiquitin cycle;1.01905544645389e-12!GO:0008135;translation factor activity, nucleic acid binding;1.17849806398594e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.36163772708625e-12!GO:0045271;respiratory chain complex I;1.36163772708625e-12!GO:0005747;mitochondrial respiratory chain complex I;1.36163772708625e-12!GO:0044248;cellular catabolic process;1.58634345447814e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.25826966065051e-12!GO:0009057;macromolecule catabolic process;3.33194210618894e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.09524043201253e-12!GO:0043412;biopolymer modification;4.09524043201253e-12!GO:0043285;biopolymer catabolic process;5.21192075338143e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;7.90436825810731e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.94442024379517e-12!GO:0003676;nucleic acid binding;8.94953924997683e-12!GO:0005789;endoplasmic reticulum membrane;9.9986722767888e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.01672167727685e-11!GO:0032553;ribonucleotide binding;1.18373052334077e-11!GO:0032555;purine ribonucleotide binding;1.18373052334077e-11!GO:0000278;mitotic cell cycle;1.28152651932983e-11!GO:0051276;chromosome organization and biogenesis;1.44997476500275e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.48513990824961e-11!GO:0000375;RNA splicing, via transesterification reactions;1.48513990824961e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.48513990824961e-11!GO:0019941;modification-dependent protein catabolic process;1.56030527875849e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.56030527875849e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.78845113754502e-11!GO:0044257;cellular protein catabolic process;2.30017241385807e-11!GO:0017076;purine nucleotide binding;2.39580750723078e-11!GO:0006323;DNA packaging;3.8709208574264e-11!GO:0016192;vesicle-mediated transport;4.67317808210927e-11!GO:0006464;protein modification process;7.20289744224227e-11!GO:0048193;Golgi vesicle transport;1.285293343575e-10!GO:0009055;electron carrier activity;1.40035122874567e-10!GO:0006163;purine nucleotide metabolic process;1.87322719457985e-10!GO:0005635;nuclear envelope;2.18254313673474e-10!GO:0009259;ribonucleotide metabolic process;2.31814556312517e-10!GO:0042254;ribosome biogenesis and assembly;3.21542141613131e-10!GO:0030163;protein catabolic process;5.04092546960204e-10!GO:0005694;chromosome;5.8021720750694e-10!GO:0009150;purine ribonucleotide metabolic process;6.69728554411327e-10!GO:0003712;transcription cofactor activity;7.29166190367531e-10!GO:0006164;purine nucleotide biosynthetic process;7.65698132746886e-10!GO:0031965;nuclear membrane;9.41759142469075e-10!GO:0044427;chromosomal part;1.03152765157526e-09!GO:0006413;translational initiation;1.24855661058005e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.26235410597548e-09!GO:0003743;translation initiation factor activity;2.41001969860982e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.69426744848198e-09!GO:0009260;ribonucleotide biosynthetic process;3.26147645800053e-09!GO:0065004;protein-DNA complex assembly;4.52975350005326e-09!GO:0005524;ATP binding;4.55629113827142e-09!GO:0016070;RNA metabolic process;5.72049545476246e-09!GO:0000785;chromatin;5.72049545476246e-09!GO:0006461;protein complex assembly;8.00535437724206e-09!GO:0012501;programmed cell death;8.17137145302498e-09!GO:0006446;regulation of translational initiation;8.17137145302498e-09!GO:0032559;adenyl ribonucleotide binding;8.29699140316801e-09!GO:0051188;cofactor biosynthetic process;8.95142388114242e-09!GO:0009060;aerobic respiration;9.57859578045819e-09!GO:0006974;response to DNA damage stimulus;1.04961696707787e-08!GO:0006915;apoptosis;1.15019465042251e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.26156447726357e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.46884650369957e-08!GO:0045333;cellular respiration;1.50048102192528e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.50817898029022e-08!GO:0043687;post-translational protein modification;1.5696950339357e-08!GO:0044453;nuclear membrane part;1.58302068139627e-08!GO:0006913;nucleocytoplasmic transport;1.83532404517522e-08!GO:0030554;adenyl nucleotide binding;2.03390907704869e-08!GO:0006399;tRNA metabolic process;2.1297171622999e-08!GO:0016023;cytoplasmic membrane-bound vesicle;2.70327450758632e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.85267230038016e-08!GO:0006333;chromatin assembly or disassembly;3.00540674007791e-08!GO:0005793;ER-Golgi intermediate compartment;3.2052065152721e-08!GO:0051169;nuclear transport;3.78208657241629e-08!GO:0022403;cell cycle phase;3.8078365037858e-08!GO:0016604;nuclear body;3.90511480851567e-08!GO:0009141;nucleoside triphosphate metabolic process;4.26940930432916e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.73180710110607e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.73180710110607e-08!GO:0051726;regulation of cell cycle;4.73180710110607e-08!GO:0015986;ATP synthesis coupled proton transport;4.74422945339586e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.74422945339586e-08!GO:0031988;membrane-bound vesicle;4.93276404485937e-08!GO:0008219;cell death;6.31020485369788e-08!GO:0016265;death;6.31020485369788e-08!GO:0000074;regulation of progression through cell cycle;7.23786401166921e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.34551291030241e-08!GO:0042623;ATPase activity, coupled;7.46422585751646e-08!GO:0005768;endosome;8.46832426293769e-08!GO:0000087;M phase of mitotic cell cycle;8.89958254469348e-08!GO:0007067;mitosis;9.09285031731169e-08!GO:0016491;oxidoreductase activity;9.09285031731169e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.00725171567805e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.00725171567805e-07!GO:0008639;small protein conjugating enzyme activity;1.16685522854398e-07!GO:0048475;coated membrane;1.25882759184015e-07!GO:0030117;membrane coat;1.25882759184015e-07!GO:0008565;protein transporter activity;1.31543793520683e-07!GO:0006281;DNA repair;1.40050200249864e-07!GO:0065002;intracellular protein transport across a membrane;1.54925085568954e-07!GO:0006260;DNA replication;1.68020807161562e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.6808426653427e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.6808426653427e-07!GO:0004842;ubiquitin-protein ligase activity;1.78475929480714e-07!GO:0006366;transcription from RNA polymerase II promoter;1.8260636999307e-07!GO:0048523;negative regulation of cellular process;1.86185448732384e-07!GO:0009117;nucleotide metabolic process;1.90088055627006e-07!GO:0009056;catabolic process;1.91936137593323e-07!GO:0007005;mitochondrion organization and biogenesis;2.35720714694903e-07!GO:0046034;ATP metabolic process;2.42711671290081e-07!GO:0017038;protein import;2.47170918430353e-07!GO:0016887;ATPase activity;2.59036238987486e-07!GO:0005773;vacuole;2.92291321818991e-07!GO:0019829;cation-transporting ATPase activity;3.02959207246946e-07!GO:0006364;rRNA processing;3.22257434464793e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.80491066673497e-07!GO:0019787;small conjugating protein ligase activity;3.86896607134276e-07!GO:0005643;nuclear pore;4.25911176894738e-07!GO:0016568;chromatin modification;4.33576411166318e-07!GO:0006334;nucleosome assembly;4.50837067435026e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.71824078521709e-07!GO:0030120;vesicle coat;5.10722014169625e-07!GO:0030662;coated vesicle membrane;5.10722014169625e-07!GO:0016740;transferase activity;5.58659171267078e-07!GO:0016072;rRNA metabolic process;5.58659171267078e-07!GO:0006099;tricarboxylic acid cycle;6.0947619465135e-07!GO:0046356;acetyl-CoA catabolic process;6.0947619465135e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.75038385656641e-07!GO:0004812;aminoacyl-tRNA ligase activity;6.75038385656641e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.75038385656641e-07!GO:0006754;ATP biosynthetic process;7.4346963482517e-07!GO:0006753;nucleoside phosphate metabolic process;7.4346963482517e-07!GO:0031497;chromatin assembly;7.8643594032815e-07!GO:0015630;microtubule cytoskeleton;8.16361011577478e-07!GO:0005667;transcription factor complex;9.07284381713046e-07!GO:0006084;acetyl-CoA metabolic process;1.21334075111129e-06!GO:0009719;response to endogenous stimulus;1.21334075111129e-06!GO:0003924;GTPase activity;1.27367828100284e-06!GO:0016853;isomerase activity;1.2845509722633e-06!GO:0044431;Golgi apparatus part;1.31684175912986e-06!GO:0051301;cell division;1.35877454932631e-06!GO:0031410;cytoplasmic vesicle;1.3621875976957e-06!GO:0043038;amino acid activation;1.51218429911165e-06!GO:0006418;tRNA aminoacylation for protein translation;1.51218429911165e-06!GO:0043039;tRNA aminoacylation;1.51218429911165e-06!GO:0009108;coenzyme biosynthetic process;1.67448526144635e-06!GO:0031982;vesicle;1.69303874849022e-06!GO:0016881;acid-amino acid ligase activity;1.69308032813191e-06!GO:0005788;endoplasmic reticulum lumen;1.78703156776977e-06!GO:0000323;lytic vacuole;1.8184971226919e-06!GO:0005764;lysosome;1.8184971226919e-06!GO:0045259;proton-transporting ATP synthase complex;2.20838973828659e-06!GO:0005770;late endosome;3.22364838059244e-06!GO:0005905;coated pit;3.48834957613366e-06!GO:0016607;nuclear speck;3.62521420633543e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.05930089252956e-06!GO:0051246;regulation of protein metabolic process;4.91951738393167e-06!GO:0008654;phospholipid biosynthetic process;4.92630550558746e-06!GO:0031252;leading edge;5.44731798838153e-06!GO:0006916;anti-apoptosis;6.27246711515561e-06!GO:0042981;regulation of apoptosis;6.79154549182552e-06!GO:0046930;pore complex;7.22483402313901e-06!GO:0043067;regulation of programmed cell death;7.35798495477929e-06!GO:0050657;nucleic acid transport;7.82289256556697e-06!GO:0051236;establishment of RNA localization;7.82289256556697e-06!GO:0050658;RNA transport;7.82289256556697e-06!GO:0048519;negative regulation of biological process;8.05707291623124e-06!GO:0007010;cytoskeleton organization and biogenesis;8.60904328654302e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.64250806254759e-06!GO:0006403;RNA localization;8.95058336258662e-06!GO:0009109;coenzyme catabolic process;9.86003284371287e-06!GO:0005798;Golgi-associated vesicle;1.23216313855208e-05!GO:0045786;negative regulation of progression through cell cycle;1.23576707856994e-05!GO:0003697;single-stranded DNA binding;1.27208339489636e-05!GO:0000279;M phase;1.56341821672427e-05!GO:0005762;mitochondrial large ribosomal subunit;1.62011332584268e-05!GO:0000315;organellar large ribosomal subunit;1.62011332584268e-05!GO:0043069;negative regulation of programmed cell death;1.71172274335354e-05!GO:0051187;cofactor catabolic process;1.90868713610092e-05!GO:0044440;endosomal part;2.10403113968607e-05!GO:0010008;endosome membrane;2.10403113968607e-05!GO:0006752;group transfer coenzyme metabolic process;2.10403113968607e-05!GO:0008026;ATP-dependent helicase activity;2.12990946403216e-05!GO:0051329;interphase of mitotic cell cycle;2.13409136461034e-05!GO:0003714;transcription corepressor activity;2.23818373461572e-05!GO:0006793;phosphorus metabolic process;2.32301084392844e-05!GO:0006796;phosphate metabolic process;2.32301084392844e-05!GO:0016126;sterol biosynthetic process;2.36303022768689e-05!GO:0004386;helicase activity;2.3646464587907e-05!GO:0043066;negative regulation of apoptosis;2.43832510412827e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.62728809713875e-05!GO:0051325;interphase;2.65938819193671e-05!GO:0006091;generation of precursor metabolites and energy;2.73732542003773e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.98106688672769e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.98106688672769e-05!GO:0000245;spliceosome assembly;2.98625873915057e-05!GO:0051427;hormone receptor binding;3.00714751631145e-05!GO:0006414;translational elongation;3.20730974733308e-05!GO:0016787;hydrolase activity;3.52566081226756e-05!GO:0016567;protein ubiquitination;3.69098642229151e-05!GO:0032446;protein modification by small protein conjugation;3.73455415866712e-05!GO:0005525;GTP binding;3.91734175898035e-05!GO:0003713;transcription coactivator activity;4.12643281341756e-05!GO:0008610;lipid biosynthetic process;4.3728857731441e-05!GO:0044262;cellular carbohydrate metabolic process;4.46678311303112e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.48398521906851e-05!GO:0043623;cellular protein complex assembly;4.58080273857145e-05!GO:0016779;nucleotidyltransferase activity;4.77004696581068e-05!GO:0045454;cell redox homeostasis;5.15434965788807e-05!GO:0030118;clathrin coat;5.53526533588895e-05!GO:0035257;nuclear hormone receptor binding;6.10025457178133e-05!GO:0048471;perinuclear region of cytoplasm;6.10108246363033e-05!GO:0043566;structure-specific DNA binding;6.24189744161371e-05!GO:0016564;transcription repressor activity;6.36145335085966e-05!GO:0004298;threonine endopeptidase activity;7.21870937373275e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.71825877800838e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.66846723765736e-05!GO:0030036;actin cytoskeleton organization and biogenesis;8.96955137200919e-05!GO:0005791;rough endoplasmic reticulum;9.99763918271607e-05!GO:0008092;cytoskeletal protein binding;0.000108266323334822!GO:0000139;Golgi membrane;0.000115843229567885!GO:0019843;rRNA binding;0.000117654252988452!GO:0016310;phosphorylation;0.00011781841722808!GO:0051170;nuclear import;0.000127187628254991!GO:0003899;DNA-directed RNA polymerase activity;0.000127395920059055!GO:0000314;organellar small ribosomal subunit;0.000139221587046601!GO:0005763;mitochondrial small ribosomal subunit;0.000139221587046601!GO:0046474;glycerophospholipid biosynthetic process;0.00013985115591187!GO:0051028;mRNA transport;0.00014601508931789!GO:0031324;negative regulation of cellular metabolic process;0.00014601508931789!GO:0006695;cholesterol biosynthetic process;0.000181643097293534!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000211750935188257!GO:0006606;protein import into nucleus;0.000213120153164289!GO:0016563;transcription activator activity;0.000226098045911349!GO:0051789;response to protein stimulus;0.000236278470245843!GO:0006986;response to unfolded protein;0.000236278470245843!GO:0032561;guanyl ribonucleotide binding;0.000263285416792247!GO:0019001;guanyl nucleotide binding;0.000263285416792247!GO:0009165;nucleotide biosynthetic process;0.000305795287347449!GO:0008361;regulation of cell size;0.000347923191923965!GO:0050794;regulation of cellular process;0.000356920964533175!GO:0033116;ER-Golgi intermediate compartment membrane;0.000371570992472442!GO:0030029;actin filament-based process;0.000371570992472442!GO:0016049;cell growth;0.000374690429182316!GO:0030659;cytoplasmic vesicle membrane;0.000374690429182316!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000390816755972424!GO:0006839;mitochondrial transport;0.000393338896656835!GO:0000151;ubiquitin ligase complex;0.000395358413181992!GO:0043284;biopolymer biosynthetic process;0.000414128309855249!GO:0030133;transport vesicle;0.000421712161939587!GO:0008250;oligosaccharyl transferase complex;0.000429725897938744!GO:0006613;cotranslational protein targeting to membrane;0.000447321904357136!GO:0030119;AP-type membrane coat adaptor complex;0.000454514332823353!GO:0030131;clathrin adaptor complex;0.000454514332823353!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000513284188817095!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000544039462515387!GO:0000786;nucleosome;0.000550621593960701!GO:0030867;rough endoplasmic reticulum membrane;0.000567708186197384!GO:0001558;regulation of cell growth;0.000588704021888091!GO:0009892;negative regulation of metabolic process;0.000656879688008124!GO:0016860;intramolecular oxidoreductase activity;0.000658824430571596!GO:0016859;cis-trans isomerase activity;0.000673649312406163!GO:0051920;peroxiredoxin activity;0.000702111965455515!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000723559427162464!GO:0005874;microtubule;0.000726105750656151!GO:0019748;secondary metabolic process;0.000751284877679602!GO:0003724;RNA helicase activity;0.000795472601236848!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000806197050793746!GO:0043681;protein import into mitochondrion;0.000831441367503202!GO:0006626;protein targeting to mitochondrion;0.000831441367503202!GO:0005048;signal sequence binding;0.000836561704417672!GO:0007264;small GTPase mediated signal transduction;0.000917297996707009!GO:0005769;early endosome;0.000966352508128527!GO:0030176;integral to endoplasmic reticulum membrane;0.00107075621897574!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00110859993560802!GO:0044433;cytoplasmic vesicle part;0.00111392960552028!GO:0019899;enzyme binding;0.00111893248660823!GO:0030658;transport vesicle membrane;0.00111893248660823!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00114485197780845!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00115240449889022!GO:0007040;lysosome organization and biogenesis;0.00115335602982328!GO:0043021;ribonucleoprotein binding;0.00116096775908322!GO:0006082;organic acid metabolic process;0.00120008295355499!GO:0016044;membrane organization and biogenesis;0.00122669601717902!GO:0005885;Arp2/3 protein complex;0.00125904030355265!GO:0046467;membrane lipid biosynthetic process;0.00129666709399092!GO:0019752;carboxylic acid metabolic process;0.0013332331828524!GO:0007033;vacuole organization and biogenesis;0.00142190787267547!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00152003737318633!GO:0018196;peptidyl-asparagine modification;0.00165565752078774!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00165565752078774!GO:0030880;RNA polymerase complex;0.00172316068461331!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00191061060544553!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00191061060544553!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00191061060544553!GO:0030027;lamellipodium;0.00191061060544553!GO:0031902;late endosome membrane;0.00197396360563078!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0021118647867752!GO:0003729;mRNA binding;0.0021798664237979!GO:0051168;nuclear export;0.00218061345276981!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00227131035063447!GO:0015399;primary active transmembrane transporter activity;0.00227131035063447!GO:0001726;ruffle;0.00230005974499533!GO:0042802;identical protein binding;0.00245306676471784!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00248532945205508!GO:0015992;proton transport;0.00251272233518818!GO:0004576;oligosaccharyl transferase activity;0.00256984254414025!GO:0030660;Golgi-associated vesicle membrane;0.00258090080252935!GO:0008186;RNA-dependent ATPase activity;0.00268558656791134!GO:0006818;hydrogen transport;0.00270011881786246!GO:0046489;phosphoinositide biosynthetic process;0.00272992474046956!GO:0031124;mRNA 3'-end processing;0.00275173579567036!GO:0005819;spindle;0.00278973804422491!GO:0016363;nuclear matrix;0.00285016640677627!GO:0048487;beta-tubulin binding;0.00293415428985435!GO:0030125;clathrin vesicle coat;0.00300547963856471!GO:0030665;clathrin coated vesicle membrane;0.00300547963856471!GO:0005684;U2-dependent spliceosome;0.00304562588629397!GO:0030132;clathrin coat of coated pit;0.00309543193126764!GO:0006650;glycerophospholipid metabolic process;0.00319552071656971!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00327182184350247!GO:0050789;regulation of biological process;0.00341668145814151!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00358805259111571!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00358805259111571!GO:0008033;tRNA processing;0.00366287452566737!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00367307749542187!GO:0043488;regulation of mRNA stability;0.00372618365780911!GO:0043487;regulation of RNA stability;0.00372618365780911!GO:0006520;amino acid metabolic process;0.00377221393179888!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00393218795353434!GO:0006807;nitrogen compound metabolic process;0.00396323614721402!GO:0006402;mRNA catabolic process;0.00396744958213244!GO:0031968;organelle outer membrane;0.00400920272893726!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00404247034461491!GO:0000428;DNA-directed RNA polymerase complex;0.00404247034461491!GO:0046148;pigment biosynthetic process;0.00414910972330242!GO:0012506;vesicle membrane;0.00439929772114781!GO:0042440;pigment metabolic process;0.00443339236317176!GO:0006740;NADPH regeneration;0.00472470043437524!GO:0006098;pentose-phosphate shunt;0.00472470043437524!GO:0031072;heat shock protein binding;0.00479843137750011!GO:0016125;sterol metabolic process;0.00483972037345701!GO:0005774;vacuolar membrane;0.00491035381287092!GO:0051087;chaperone binding;0.00495572913705342!GO:0019867;outer membrane;0.00506489250128411!GO:0006612;protein targeting to membrane;0.00509204340853818!GO:0006383;transcription from RNA polymerase III promoter;0.0052058742916989!GO:0065009;regulation of a molecular function;0.00562944542537066!GO:0016481;negative regulation of transcription;0.0056911692326624!GO:0035258;steroid hormone receptor binding;0.00582204684064555!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00613331594675515!GO:0005813;centrosome;0.00628487912691041!GO:0006595;polyamine metabolic process;0.00634798976573206!GO:0009308;amine metabolic process;0.00649743574887187!GO:0017166;vinculin binding;0.00664060902814052!GO:0030521;androgen receptor signaling pathway;0.00674132475018882!GO:0006643;membrane lipid metabolic process;0.00686077159637908!GO:0004004;ATP-dependent RNA helicase activity;0.0070074125185587!GO:0006779;porphyrin biosynthetic process;0.00703952748319222!GO:0033014;tetrapyrrole biosynthetic process;0.00703952748319222!GO:0044452;nucleolar part;0.00732873792024006!GO:0003682;chromatin binding;0.00739199871790107!GO:0040008;regulation of growth;0.00740690981268082!GO:0008022;protein C-terminus binding;0.00759399835588695!GO:0005741;mitochondrial outer membrane;0.00762740237845571!GO:0051252;regulation of RNA metabolic process;0.00763197081773321!GO:0006261;DNA-dependent DNA replication;0.00778137173558353!GO:0005869;dynactin complex;0.00790623396478559!GO:0006401;RNA catabolic process;0.008260836757683!GO:0046483;heterocycle metabolic process;0.00828156563702636!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00831240141255219!GO:0007051;spindle organization and biogenesis;0.00835371436422715!GO:0006066;alcohol metabolic process;0.00839578293097378!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00881732729682552!GO:0015002;heme-copper terminal oxidase activity;0.00881732729682552!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00881732729682552!GO:0004129;cytochrome-c oxidase activity;0.00881732729682552!GO:0007006;mitochondrial membrane organization and biogenesis;0.00885700592694741!GO:0006007;glucose catabolic process;0.00912450307961856!GO:0006778;porphyrin metabolic process;0.00929162940707156!GO:0033013;tetrapyrrole metabolic process;0.00929162940707156!GO:0008632;apoptotic program;0.00936330738426155!GO:0033673;negative regulation of kinase activity;0.009547230510757!GO:0006469;negative regulation of protein kinase activity;0.009547230510757!GO:0005815;microtubule organizing center;0.00958280908536225!GO:0015631;tubulin binding;0.00971218611220137!GO:0006352;transcription initiation;0.00996568535431415!GO:0007050;cell cycle arrest;0.0100336980689353!GO:0003746;translation elongation factor activity;0.0101185863931908!GO:0031123;RNA 3'-end processing;0.010378203208224!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0111809076813751!GO:0043492;ATPase activity, coupled to movement of substances;0.0117609127176968!GO:0016272;prefoldin complex;0.0117847781929043!GO:0022890;inorganic cation transmembrane transporter activity;0.0122114045127875!GO:0005765;lysosomal membrane;0.0122125400384441!GO:0048468;cell development;0.0125552302722065!GO:0006519;amino acid and derivative metabolic process;0.0125719519901276!GO:0000086;G2/M transition of mitotic cell cycle;0.0125976769021135!GO:0003684;damaged DNA binding;0.0127953681479503!GO:0044437;vacuolar part;0.0128100857325031!GO:0006644;phospholipid metabolic process;0.0130041364771655!GO:0006509;membrane protein ectodomain proteolysis;0.0130041364771655!GO:0033619;membrane protein proteolysis;0.0130041364771655!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0132551869837787!GO:0051348;negative regulation of transferase activity;0.0134400316693039!GO:0000075;cell cycle checkpoint;0.0135397016674907!GO:0003711;transcription elongation regulator activity;0.0138985008046102!GO:0032508;DNA duplex unwinding;0.013965243655965!GO:0032392;DNA geometric change;0.013965243655965!GO:0016741;transferase activity, transferring one-carbon groups;0.0141064648419528!GO:0000118;histone deacetylase complex;0.0144737387799366!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0146711110111618!GO:0006611;protein export from nucleus;0.0147339931538829!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0147339931538829!GO:0005862;muscle thin filament tropomyosin;0.0151872564148501!GO:0006783;heme biosynthetic process;0.0153139960539963!GO:0030663;COPI coated vesicle membrane;0.0158184303996862!GO:0030126;COPI vesicle coat;0.0158184303996862!GO:0051287;NAD binding;0.0158456083527351!GO:0006891;intra-Golgi vesicle-mediated transport;0.0158760546126627!GO:0006720;isoprenoid metabolic process;0.0159186554617358!GO:0005657;replication fork;0.0164486488540606!GO:0006220;pyrimidine nucleotide metabolic process;0.0166625472102388!GO:0006378;mRNA polyadenylation;0.0166625472102388!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0177740289208683!GO:0051539;4 iron, 4 sulfur cluster binding;0.0178733442129494!GO:0007017;microtubule-based process;0.0178861092236248!GO:0045792;negative regulation of cell size;0.0178861092236248!GO:0050662;coenzyme binding;0.0181174618031799!GO:0008168;methyltransferase activity;0.0185579668597796!GO:0006979;response to oxidative stress;0.0192644447841353!GO:0030145;manganese ion binding;0.0193842363727085!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0196113256660858!GO:0040029;regulation of gene expression, epigenetic;0.0198544727951983!GO:0000339;RNA cap binding;0.0201425074105977!GO:0030137;COPI-coated vesicle;0.020542251836678!GO:0008139;nuclear localization sequence binding;0.0206440108130899!GO:0003779;actin binding;0.0206440108130899!GO:0042168;heme metabolic process;0.0206637401967792!GO:0009112;nucleobase metabolic process;0.0208274792592396!GO:0000059;protein import into nucleus, docking;0.0208660432893094!GO:0003756;protein disulfide isomerase activity;0.0209148404390519!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0209148404390519!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0209148404390519!GO:0030384;phosphoinositide metabolic process;0.0210309320713091!GO:0006730;one-carbon compound metabolic process;0.0212683739061237!GO:0000096;sulfur amino acid metabolic process;0.0213107430603262!GO:0030308;negative regulation of cell growth;0.0219535158961575!GO:0030134;ER to Golgi transport vesicle;0.0220243051948006!GO:0030496;midbody;0.0224491170114606!GO:0044255;cellular lipid metabolic process;0.022595965431497!GO:0005996;monosaccharide metabolic process;0.022595965431497!GO:0006733;oxidoreduction coenzyme metabolic process;0.0226297533862605!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0231570739240828!GO:0031301;integral to organelle membrane;0.0233662422278094!GO:0030100;regulation of endocytosis;0.0245395098566821!GO:0005637;nuclear inner membrane;0.0246506357482725!GO:0006790;sulfur metabolic process;0.0247260354221455!GO:0051098;regulation of binding;0.0249218092860734!GO:0045893;positive regulation of transcription, DNA-dependent;0.025251228741577!GO:0006497;protein amino acid lipidation;0.0254065621509904!GO:0006338;chromatin remodeling;0.0256432825161236!GO:0006289;nucleotide-excision repair;0.0257816815162294!GO:0005832;chaperonin-containing T-complex;0.0260740019226978!GO:0009081;branched chain family amino acid metabolic process;0.0262953305429135!GO:0042158;lipoprotein biosynthetic process;0.0263260620737615!GO:0043189;H4/H2A histone acetyltransferase complex;0.0263640906709047!GO:0000792;heterochromatin;0.0266530062619502!GO:0031970;organelle envelope lumen;0.0266819483898875!GO:0016569;covalent chromatin modification;0.0269541057664186!GO:0031369;translation initiation factor binding;0.027151871584845!GO:0006506;GPI anchor biosynthetic process;0.0272071758224954!GO:0006897;endocytosis;0.0272400292040362!GO:0010324;membrane invagination;0.0272400292040362!GO:0035035;histone acetyltransferase binding;0.0275987358600536!GO:0008094;DNA-dependent ATPase activity;0.0279075599347103!GO:0006672;ceramide metabolic process;0.0281289007700964!GO:0007021;tubulin folding;0.0285114686218053!GO:0004674;protein serine/threonine kinase activity;0.0291587009562117!GO:0050750;low-density lipoprotein receptor binding;0.0293000258425042!GO:0005758;mitochondrial intermembrane space;0.0293877071248473!GO:0043414;biopolymer methylation;0.0295149043315523!GO:0007265;Ras protein signal transduction;0.0302219258923141!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.030273729848769!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.030273729848769!GO:0004177;aminopeptidase activity;0.0304803883696758!GO:0008286;insulin receptor signaling pathway;0.0306436776456271!GO:0019318;hexose metabolic process;0.0312122762977847!GO:0006268;DNA unwinding during replication;0.0314103687138596!GO:0000123;histone acetyltransferase complex;0.0320543785277761!GO:0035267;NuA4 histone acetyltransferase complex;0.0320543785277761!GO:0006144;purine base metabolic process;0.0320543785277761!GO:0008147;structural constituent of bone;0.0324804671405136!GO:0048500;signal recognition particle;0.032731450474131!GO:0003678;DNA helicase activity;0.032731450474131!GO:0000049;tRNA binding;0.0327595407966325!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0330487135202135!GO:0030140;trans-Golgi network transport vesicle;0.0331515811084594!GO:0008538;proteasome activator activity;0.0343022024957367!GO:0000082;G1/S transition of mitotic cell cycle;0.0343322657542235!GO:0030127;COPII vesicle coat;0.0344647444912672!GO:0012507;ER to Golgi transport vesicle membrane;0.0344647444912672!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0347029378361816!GO:0046519;sphingoid metabolic process;0.0352094689252462!GO:0032906;transforming growth factor-beta2 production;0.0361814019737366!GO:0032909;regulation of transforming growth factor-beta2 production;0.0361814019737366!GO:0043022;ribosome binding;0.0361814019737366!GO:0032259;methylation;0.0362133997443743!GO:0045941;positive regulation of transcription;0.0362531660019376!GO:0000209;protein polyubiquitination;0.0362531660019376!GO:0006739;NADP metabolic process;0.0372979112923432!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0378345386488882!GO:0051540;metal cluster binding;0.0388285049387234!GO:0051536;iron-sulfur cluster binding;0.0388285049387234!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.039158926125729!GO:0030508;thiol-disulfide exchange intermediate activity;0.039362133855027!GO:0009303;rRNA transcription;0.0401985772519216!GO:0030031;cell projection biogenesis;0.0401985772519216!GO:0008312;7S RNA binding;0.0403026610024907!GO:0005975;carbohydrate metabolic process;0.0403953084956963!GO:0008190;eukaryotic initiation factor 4E binding;0.0405856933876309!GO:0006505;GPI anchor metabolic process;0.0415061662000192!GO:0050811;GABA receptor binding;0.0415061662000192!GO:0006405;RNA export from nucleus;0.0415061662000192!GO:0006767;water-soluble vitamin metabolic process;0.0417255614504421!GO:0008203;cholesterol metabolic process;0.0418790131878229!GO:0051101;regulation of DNA binding;0.0422473090162135!GO:0051128;regulation of cellular component organization and biogenesis;0.042471166050297!GO:0050681;androgen receptor binding;0.0427373280977517!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0427373280977517!GO:0043495;protein anchor;0.0429386837781528!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0429386837781528!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0429669165073638!GO:0012510;trans-Golgi network transport vesicle membrane;0.0429669165073638!GO:0046966;thyroid hormone receptor binding;0.0432074602075922!GO:0005092;GDP-dissociation inhibitor activity;0.0433902532631353!GO:0050178;phenylpyruvate tautomerase activity;0.0437472030232211!GO:0015036;disulfide oxidoreductase activity;0.0441795712573771!GO:0006376;mRNA splice site selection;0.0444109520725842!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0444109520725842!GO:0016197;endosome transport;0.0446817812740283!GO:0006769;nicotinamide metabolic process;0.0449767797675282!GO:0045926;negative regulation of growth;0.0453931108644629!GO:0016570;histone modification;0.0454276782533728!GO:0019798;procollagen-proline dioxygenase activity;0.0457333766347309!GO:0031543;peptidyl-proline dioxygenase activity;0.0458281723982384!GO:0031529;ruffle organization and biogenesis;0.0458788095382523!GO:0007243;protein kinase cascade;0.0459971395456737!GO:0005938;cell cortex;0.0461931144676157!GO:0030865;cortical cytoskeleton organization and biogenesis;0.046222368025248!GO:0004680;casein kinase activity;0.0476111915616543!GO:0016251;general RNA polymerase II transcription factor activity;0.0482609795466791!GO:0006284;base-excision repair;0.0482609795466791!GO:0043631;RNA polyadenylation;0.0496077863170047!GO:0045947;negative regulation of translational initiation;0.049804933323877!GO:0006118;electron transport;0.0498860577841189 | |||
|sample_id=11528 | |sample_id=11528 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=EBF1:2.02684411772;HOX{A6,A7,B6,B7}:1.87244692873;NKX2-1,4:1.72046339462;GTF2A1,2:1.5960834207;RXR{A,B,G}:1.55979922562;PBX1:1.49848127886;PAX1,9:1.45471281454;NANOG:1.36532966048;GLI1..3:1.35102130328;MYOD1:1.27888637113;ZNF423:1.17647791013;TFAP2{A,C}:1.10338932436;TEAD1:1.09019643441;ZNF148:1.02841045782;LHX3,4:1.01026014138;HAND1,2:0.954808995926;TLX1..3_NFIC{dimer}:0.912859864219;ESRRA:0.908156525507;CRX:0.88967862351;PAX5:0.864976205174;bHLH_family:0.835722900615;EN1,2:0.8356067357;T:0.805859073416;RXRA_VDR{dimer}:0.798316326267;STAT5{A,B}:0.797940728245;ZIC1..3:0.77294137591;SOX17:0.766731451963;FOXM1:0.766231176367;NR3C1:0.751002739278;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.750611280644;SP1:0.746487208933;TFCP2:0.674862759666;TAL1_TCF{3,4,12}:0.641254147919;HOX{A5,B5}:0.640974194321;SOX2:0.626107135704;HIC1:0.617916779618;LMO2:0.593862343435;PATZ1:0.579344130537;NR6A1:0.577272067394;GFI1B:0.527567702506;ONECUT1,2:0.503665287761;GFI1:0.487621508506;TFAP2B:0.477169044894;RREB1:0.472628784885;FOXL1:0.466803745973;XCPE1{core}:0.462566961505;HNF4A_NR2F1,2:0.452126601694;SOX{8,9,10}:0.451164144072;SNAI1..3:0.447752650382;HSF1,2:0.44769983976;ZEB1:0.43765340305;TBP:0.421688280237;NFY{A,B,C}:0.401777862311;TFDP1:0.3634306962;ZBTB6:0.362276149451;RFX1:0.360441818761;MTE{core}:0.356541210224;GTF2I:0.353063887755;TP53:0.350511232846;POU1F1:0.348481740005;MEF2{A,B,C,D}:0.346866504753;NR5A1,2:0.327492614141;PAX8:0.289037206074;MAZ:0.263070571278;JUN:0.254137805602;PRRX1,2:0.244611464518;ADNP_IRX_SIX_ZHX:0.241294171688;TFAP4:0.237726785268;RORA:0.218494604898;GATA6:0.210932504165;HES1:0.206164559234;E2F1..5:0.190328569456;HOXA9_MEIS1:0.179616558833;LEF1_TCF7_TCF7L1,2:0.175856925411;HNF1A:0.143440848873;ZNF143:0.120736865914;SRF:0.102965847281;KLF4:0.0729251298052;IKZF1:0.0541285928801;NKX6-1,2:0.0478948670879;FOSL2:0.0473468465016;SMAD1..7,9:0.0457197596904;SREBF1,2:0.0245843408846;POU3F1..4:0.0221019977013;BACH2:0.0129931326556;PDX1:0.00452358383343;REST:-0.00858847831321;FOX{D1,D2}:-0.0266289788951;CDC5L:-0.053278989522;UFEwm:-0.0552326310911;EGR1..3:-0.0668755716621;XBP1:-0.0889968181709;OCT4_SOX2{dimer}:-0.097011594417;FOS_FOS{B,L1}_JUN{B,D}:-0.10106826266;ARID5B:-0.108936994712;MZF1:-0.1140794223;NFIL3:-0.125330564647;MYBL2:-0.153596372108;SOX5:-0.18645712798;PPARG:-0.19182791854;POU2F1..3:-0.193987770994;NRF1:-0.22901943192;POU5F1:-0.238614107539;NHLH1,2:-0.248115204971;ALX4:-0.251337466048;NFE2:-0.253218694;EP300:-0.255098736599;FOXQ1:-0.255550581848;HOX{A4,D4}:-0.25621821845;PITX1..3:-0.26581401435;DBP:-0.286642118944;NFE2L2:-0.287375633805;VSX1,2:-0.292219581323;MYFfamily:-0.301346242746;RBPJ:-0.317800255788;NFE2L1:-0.319190451326;GZF1:-0.323089314723;NR1H4:-0.332975589785;SPZ1:-0.334633744018;HMX1:-0.338851111596;BREu{core}:-0.362529497578;NFKB1_REL_RELA:-0.368739707117;EVI1:-0.369550505947;MYB:-0.375620944188;TEF:-0.381359886418;ZFP161:-0.385065093905;YY1:-0.385690748696;ELK1,4_GABP{A,B1}:-0.391649854146;HLF:-0.401295851203;CUX2:-0.407754408612;AIRE:-0.408545257291;RUNX1..3:-0.411630570702;NKX2-3_NKX2-5:-0.423862873769;ESR1:-0.441789837702;RFX2..5_RFXANK_RFXAP:-0.44249481937;NFATC1..3:-0.470829729692;POU6F1:-0.472819033994;ZNF384:-0.47557959536;FOX{F1,F2,J1}:-0.484175667832;NKX3-1:-0.487426624051;ZNF238:-0.489714355028;TOPORS:-0.500517696129;NKX3-2:-0.521307296797;NKX2-2,8:-0.53308397375;TBX4,5:-0.556019515177;PRDM1:-0.561568088234;ATF2:-0.574114594064;FOXA2:-0.590184935943;ETS1,2:-0.596110483492;ATF4:-0.602556906359;SPIB:-0.604686286155;ALX1:-0.632582979254;MED-1{core}:-0.639419565652;NANOG{mouse}:-0.654879089738;PAX4:-0.662759739555;STAT2,4,6:-0.686374165053;AR:-0.694094152265;FOXO1,3,4:-0.697617752433;CEBPA,B_DDIT3:-0.698201705922;GCM1,2:-0.721689030244;MTF1:-0.736998082705;GATA4:-0.74641391393;STAT1,3:-0.753492549842;CDX1,2,4:-0.75709796502;FOXP3:-0.76033176548;FOX{I1,J2}:-0.792871339902;FOXP1:-0.825027943772;AHR_ARNT_ARNT2:-0.826348380084;SPI1:-0.827321254135;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.827364644531;HIF1A:-0.867635933229;IRF7:-0.873288579956;PAX3,7:-0.874076413928;ATF6:-0.888118021457;PAX6:-0.917452724628;FOXD3:-0.925893264639;IKZF2:-0.935954086519;BPTF:-0.957225856107;ELF1,2,4:-0.981457937944;ATF5_CREB3:-0.983061677645;IRF1,2:-0.995946024281;HBP1_HMGB_SSRP1_UBTF:-1.02966483874;NFIX:-1.06238818731;DMAP1_NCOR{1,2}_SMARC:-1.06892303833;HMGA1,2:-1.09476703523;PAX2:-1.16773258929;TLX2:-1.20799760935;CREB1:-1.22489580411;TGIF1:-1.27802281808;MAFB:-1.2800773942;FOXN1:-1.37401389281;ZBTB16:-1.51351894511 | |top_motifs=EBF1:2.02684411772;HOX{A6,A7,B6,B7}:1.87244692873;NKX2-1,4:1.72046339462;GTF2A1,2:1.5960834207;RXR{A,B,G}:1.55979922562;PBX1:1.49848127886;PAX1,9:1.45471281454;NANOG:1.36532966048;GLI1..3:1.35102130328;MYOD1:1.27888637113;ZNF423:1.17647791013;TFAP2{A,C}:1.10338932436;TEAD1:1.09019643441;ZNF148:1.02841045782;LHX3,4:1.01026014138;HAND1,2:0.954808995926;TLX1..3_NFIC{dimer}:0.912859864219;ESRRA:0.908156525507;CRX:0.88967862351;PAX5:0.864976205174;bHLH_family:0.835722900615;EN1,2:0.8356067357;T:0.805859073416;RXRA_VDR{dimer}:0.798316326267;STAT5{A,B}:0.797940728245;ZIC1..3:0.77294137591;SOX17:0.766731451963;FOXM1:0.766231176367;NR3C1:0.751002739278;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.750611280644;SP1:0.746487208933;TFCP2:0.674862759666;TAL1_TCF{3,4,12}:0.641254147919;HOX{A5,B5}:0.640974194321;SOX2:0.626107135704;HIC1:0.617916779618;LMO2:0.593862343435;PATZ1:0.579344130537;NR6A1:0.577272067394;GFI1B:0.527567702506;ONECUT1,2:0.503665287761;GFI1:0.487621508506;TFAP2B:0.477169044894;RREB1:0.472628784885;FOXL1:0.466803745973;XCPE1{core}:0.462566961505;HNF4A_NR2F1,2:0.452126601694;SOX{8,9,10}:0.451164144072;SNAI1..3:0.447752650382;HSF1,2:0.44769983976;ZEB1:0.43765340305;TBP:0.421688280237;NFY{A,B,C}:0.401777862311;TFDP1:0.3634306962;ZBTB6:0.362276149451;RFX1:0.360441818761;MTE{core}:0.356541210224;GTF2I:0.353063887755;TP53:0.350511232846;POU1F1:0.348481740005;MEF2{A,B,C,D}:0.346866504753;NR5A1,2:0.327492614141;PAX8:0.289037206074;MAZ:0.263070571278;JUN:0.254137805602;PRRX1,2:0.244611464518;ADNP_IRX_SIX_ZHX:0.241294171688;TFAP4:0.237726785268;RORA:0.218494604898;GATA6:0.210932504165;HES1:0.206164559234;E2F1..5:0.190328569456;HOXA9_MEIS1:0.179616558833;LEF1_TCF7_TCF7L1,2:0.175856925411;HNF1A:0.143440848873;ZNF143:0.120736865914;SRF:0.102965847281;KLF4:0.0729251298052;IKZF1:0.0541285928801;NKX6-1,2:0.0478948670879;FOSL2:0.0473468465016;SMAD1..7,9:0.0457197596904;SREBF1,2:0.0245843408846;POU3F1..4:0.0221019977013;BACH2:0.0129931326556;PDX1:0.00452358383343;REST:-0.00858847831321;FOX{D1,D2}:-0.0266289788951;CDC5L:-0.053278989522;UFEwm:-0.0552326310911;EGR1..3:-0.0668755716621;XBP1:-0.0889968181709;OCT4_SOX2{dimer}:-0.097011594417;FOS_FOS{B,L1}_JUN{B,D}:-0.10106826266;ARID5B:-0.108936994712;MZF1:-0.1140794223;NFIL3:-0.125330564647;MYBL2:-0.153596372108;SOX5:-0.18645712798;PPARG:-0.19182791854;POU2F1..3:-0.193987770994;NRF1:-0.22901943192;POU5F1:-0.238614107539;NHLH1,2:-0.248115204971;ALX4:-0.251337466048;NFE2:-0.253218694;EP300:-0.255098736599;FOXQ1:-0.255550581848;HOX{A4,D4}:-0.25621821845;PITX1..3:-0.26581401435;DBP:-0.286642118944;NFE2L2:-0.287375633805;VSX1,2:-0.292219581323;MYFfamily:-0.301346242746;RBPJ:-0.317800255788;NFE2L1:-0.319190451326;GZF1:-0.323089314723;NR1H4:-0.332975589785;SPZ1:-0.334633744018;HMX1:-0.338851111596;BREu{core}:-0.362529497578;NFKB1_REL_RELA:-0.368739707117;EVI1:-0.369550505947;MYB:-0.375620944188;TEF:-0.381359886418;ZFP161:-0.385065093905;YY1:-0.385690748696;ELK1,4_GABP{A,B1}:-0.391649854146;HLF:-0.401295851203;CUX2:-0.407754408612;AIRE:-0.408545257291;RUNX1..3:-0.411630570702;NKX2-3_NKX2-5:-0.423862873769;ESR1:-0.441789837702;RFX2..5_RFXANK_RFXAP:-0.44249481937;NFATC1..3:-0.470829729692;POU6F1:-0.472819033994;ZNF384:-0.47557959536;FOX{F1,F2,J1}:-0.484175667832;NKX3-1:-0.487426624051;ZNF238:-0.489714355028;TOPORS:-0.500517696129;NKX3-2:-0.521307296797;NKX2-2,8:-0.53308397375;TBX4,5:-0.556019515177;PRDM1:-0.561568088234;ATF2:-0.574114594064;FOXA2:-0.590184935943;ETS1,2:-0.596110483492;ATF4:-0.602556906359;SPIB:-0.604686286155;ALX1:-0.632582979254;MED-1{core}:-0.639419565652;NANOG{mouse}:-0.654879089738;PAX4:-0.662759739555;STAT2,4,6:-0.686374165053;AR:-0.694094152265;FOXO1,3,4:-0.697617752433;CEBPA,B_DDIT3:-0.698201705922;GCM1,2:-0.721689030244;MTF1:-0.736998082705;GATA4:-0.74641391393;STAT1,3:-0.753492549842;CDX1,2,4:-0.75709796502;FOXP3:-0.76033176548;FOX{I1,J2}:-0.792871339902;FOXP1:-0.825027943772;AHR_ARNT_ARNT2:-0.826348380084;SPI1:-0.827321254135;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.827364644531;HIF1A:-0.867635933229;IRF7:-0.873288579956;PAX3,7:-0.874076413928;ATF6:-0.888118021457;PAX6:-0.917452724628;FOXD3:-0.925893264639;IKZF2:-0.935954086519;BPTF:-0.957225856107;ELF1,2,4:-0.981457937944;ATF5_CREB3:-0.983061677645;IRF1,2:-0.995946024281;HBP1_HMGB_SSRP1_UBTF:-1.02966483874;NFIX:-1.06238818731;DMAP1_NCOR{1,2}_SMARC:-1.06892303833;HMGA1,2:-1.09476703523;PAX2:-1.16773258929;TLX2:-1.20799760935;CREB1:-1.22489580411;TGIF1:-1.27802281808;MAFB:-1.2800773942;FOXN1:-1.37401389281;ZBTB16:-1.51351894511 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11528-119I7;search_select_hide=table117:FF:11528-119I7 | |||
}} | }} | ||
Latest revision as of 18:06, 4 June 2020
| Name: | Retinal Pigment Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11338 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11338
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11338
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.216 |
| 10 | 10 | 0.0126 |
| 100 | 100 | 0.9 |
| 101 | 101 | 0.498 |
| 102 | 102 | 0.746 |
| 103 | 103 | 0.963 |
| 104 | 104 | 0.886 |
| 105 | 105 | 0.0435 |
| 106 | 106 | 0.749 |
| 107 | 107 | 0.0432 |
| 108 | 108 | 0.691 |
| 109 | 109 | 0.349 |
| 11 | 11 | 0.703 |
| 110 | 110 | 0.361 |
| 111 | 111 | 0.0946 |
| 112 | 112 | 0.0732 |
| 113 | 113 | 0.181 |
| 114 | 114 | 0.521 |
| 115 | 115 | 0.936 |
| 116 | 116 | 0.284 |
| 117 | 117 | 0.185 |
| 118 | 118 | 0.58 |
| 119 | 119 | 0.896 |
| 12 | 12 | 0.995 |
| 120 | 120 | 0.684 |
| 121 | 121 | 0.535 |
| 122 | 122 | 0.123 |
| 123 | 123 | 0.0257 |
| 124 | 124 | 0.403 |
| 125 | 125 | 0.0775 |
| 126 | 126 | 0.158 |
| 127 | 127 | 0.97 |
| 128 | 128 | 0.638 |
| 129 | 129 | 0.947 |
| 13 | 13 | 0.717 |
| 130 | 130 | 0.152 |
| 131 | 131 | 0.734 |
| 132 | 132 | 0.0882 |
| 133 | 133 | 0.969 |
| 134 | 134 | 0.777 |
| 135 | 135 | 0.162 |
| 136 | 136 | 0.971 |
| 137 | 137 | 0.157 |
| 138 | 138 | 0.0127 |
| 139 | 139 | 0.803 |
| 14 | 14 | 0.408 |
| 140 | 140 | 0.819 |
| 141 | 141 | 0.122 |
| 142 | 142 | 0.656 |
| 143 | 143 | 0.882 |
| 144 | 144 | 0.87 |
| 145 | 145 | 0.631 |
| 146 | 146 | 0.332 |
| 147 | 147 | 0.934 |
| 148 | 148 | 0.18 |
| 149 | 149 | 0.0788 |
| 15 | 15 | 0.788 |
| 150 | 150 | 0.667 |
| 151 | 151 | 0.557 |
| 152 | 152 | 0.086 |
| 153 | 153 | 0.415 |
| 154 | 154 | 0.108 |
| 155 | 155 | 0.295 |
| 156 | 156 | 0.445 |
| 157 | 157 | 0.0205 |
| 158 | 158 | 0.0416 |
| 159 | 159 | 0.56 |
| 16 | 16 | 0.454 |
| 160 | 160 | 0.0771 |
| 161 | 161 | 0.502 |
| 162 | 162 | 0.0485 |
| 163 | 163 | 0.737 |
| 164 | 164 | 0.0626 |
| 165 | 165 | 0.0454 |
| 166 | 166 | 0.951 |
| 167 | 167 | 0.315 |
| 168 | 168 | 0.185 |
| 169 | 169 | 0.296 |
| 17 | 17 | 0.511 |
| 18 | 18 | 0.544 |
| 19 | 19 | 0.821 |
| 2 | 2 | 0.414 |
| 20 | 20 | 0.438 |
| 21 | 21 | 0.379 |
| 22 | 22 | 0.253 |
| 23 | 23 | 0.817 |
| 24 | 24 | 0.88 |
| 25 | 25 | 0.44 |
| 26 | 26 | 0.327 |
| 27 | 27 | 0.391 |
| 28 | 28 | 0.476 |
| 29 | 29 | 0.44 |
| 3 | 3 | 0.318 |
| 30 | 30 | 0.0417 |
| 31 | 31 | 0.874 |
| 32 | 32 | 0.468 |
| 33 | 33 | 0.66 |
| 34 | 34 | 0.111 |
| 35 | 35 | 0.622 |
| 36 | 36 | 0.323 |
| 37 | 37 | 0.643 |
| 38 | 38 | 0.905 |
| 39 | 39 | 0.319 |
| 4 | 4 | 0.456 |
| 40 | 40 | 0.0308 |
| 41 | 41 | 0.119 |
| 42 | 42 | 0.343 |
| 43 | 43 | 0.8 |
| 44 | 44 | 0.67 |
| 45 | 45 | 0.114 |
| 46 | 46 | 0.881 |
| 47 | 47 | 0.83 |
| 48 | 48 | 0.579 |
| 49 | 49 | 0.771 |
| 5 | 5 | 0.435 |
| 50 | 50 | 0.27 |
| 51 | 51 | 0.373 |
| 52 | 52 | 0.545 |
| 53 | 53 | 0.535 |
| 54 | 54 | 0.577 |
| 55 | 55 | 0.474 |
| 56 | 56 | 0.657 |
| 57 | 57 | 0.79 |
| 58 | 58 | 0.244 |
| 59 | 59 | 0.239 |
| 6 | 6 | 0.535 |
| 60 | 60 | 0.533 |
| 61 | 61 | 0.56 |
| 62 | 62 | 0.157 |
| 63 | 63 | 0.119 |
| 64 | 64 | 0.346 |
| 65 | 65 | 0.326 |
| 66 | 66 | 0.222 |
| 67 | 67 | 0.535 |
| 68 | 68 | 0.0658 |
| 69 | 69 | 0.0142 |
| 7 | 7 | 0.938 |
| 70 | 70 | 0.475 |
| 71 | 71 | 0.723 |
| 72 | 72 | 0.173 |
| 73 | 73 | 0.251 |
| 74 | 74 | 0.0896 |
| 75 | 75 | 0.422 |
| 76 | 76 | 0.00765 |
| 77 | 77 | 0.0464 |
| 78 | 78 | 0.322 |
| 79 | 79 | 0.784 |
| 8 | 8 | 0.281 |
| 80 | 80 | 0.246 |
| 81 | 81 | 0.356 |
| 82 | 82 | 0.736 |
| 83 | 83 | 0.503 |
| 84 | 84 | 0.527 |
| 85 | 85 | 0.971 |
| 86 | 86 | 0.564 |
| 87 | 87 | 0.445 |
| 88 | 88 | 0.271 |
| 89 | 89 | 0.336 |
| 9 | 9 | 0.502 |
| 90 | 90 | 0.0238 |
| 91 | 91 | 0.721 |
| 92 | 92 | 0.32 |
| 93 | 93 | 0.513 |
| 94 | 94 | 0.0761 |
| 95 | 95 | 0.812 |
| 96 | 96 | 0.665 |
| 97 | 97 | 0.719 |
| 98 | 98 | 0.95 |
| 99 | 99 | 0.0176 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11338
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000158 human retinal pigment epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000255 (eukaryotic cell)
0000149 (visual pigment cell)
0002586 (retinal pigment epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0005388 (photoreceptor array)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0001781 (layer of retina)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001782 (pigmented layer of retina)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000158 (human retinal pigment epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
