FF:11556-120C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005292 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008284;DRR009156;DRZ000581;DRZ001966;DRZ011931;DRZ013316 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet=DOID:4,DOID:17,DOID:450,DOID:7,DOID:66,DOID:423,DOID:0080000,DOID:11722 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000253 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11556-120C8 | |id=FF:11556-120C8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000253 | ||
|is_obsolete= | |||
|library_id=CNhs11353 | |||
|library_id_phase_based=2:CNhs11353 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11556 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11556 | |||
|name=Fibroblast - skin dystrophia myotonica, donor1 | |name=Fibroblast - skin dystrophia myotonica, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11353,LSID769,release014,COMPLETED | |profile_hcage=CNhs11353,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.076257711257822,0,-0.0598114877336789,-0.282403560576942,0,0,0,0.084060318828564,0,0,0,0,0,0,0,0.084060318828564,0,-0.0692626915198636,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.084060318828564,0,0.0229503486300062,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0132069863743587,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0143937588615336,0.042030159414282,0,0,0,0,0,0.0328665175168887,0,0,0,-0.0216832248499484,-0.053444508253666,0,0.432722283453891,0.042030159414282,0.084060318828564,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.373087961729592,0,0,0,-0.00535050231791212,0.0607396977539063,0,0,-0.0293848478584385,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.215021810472412,-0.0980353512377064,0,0.084060318828564,0.084060318828564,0.084060318828564,0,0,0,0,0.432722283453891,0,0,0.068326913598841,0,0.0776916533820924,-0.143515142523472,0,0,0.165317691531354,0,0.215021810472412,0,0,0,0,0,0.154458903240703,0,0.71571109554892,0,0.104046351651388,0,0,0,0,0,0.450270225084396,0,0.0421030805774356,0.328709181647169,0,0,0,0,0.0828777183530773,0,0.0335794194469623,0.0717387349172856,0.0465519110786558,0.049458741674723,0.0159937237950962,0,0,0,0.123099832755116,0.0244798916340494,0,0,0.355063320016677,0.0184334352958257,0,0,1.07099412023288,0,-0.0444521048917983,0.0167897097234811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25568370282921,0.0312022434408615,0.00337760174891344,0,0.084060318828564,0,0.135299854902383,0,0,-0.105122656775104,0.226324271241116,0.0245460068080753,-0.372417308512699,0,-0.302389727009913,0.0103380904981278,0.348472707399134,-0.212447707750363,0.45354965144759,0.361796152584253,0.0522163195065106,0.0328665175168887,0.0833533955945254,-0.0409426209721757,-0.228006462468333,0,0.142185375855905,-0.141938228032524,0,0,0,0.23352568423013,0,-0.0390956639131543,0.297018132519639,-0.0868326296289425,0.259306503603883,-0.0228977663762821,0.00506110969306105,0.106681394925886,0.00249763095761147,0.11962383164138,0.0129802427944469,0.410875083715236,0,0.154458903240703,-0.0199757560736669,0.075623599042757,0.0444230635059808,-0.0908940021210006,0,-0.0182947979321209,0.0861146421633347,0.042030159414282,0.0547273688835145,-0.128543792414893,0,0.103702230262932,0.0221742699473167,0.154458903240703,0,0,0,0,-0.182665594029426,0.0614593577885624,-0.0783966583148419,0,-0.0547718042391725,0,-0.097503026496102,0,0.0841698517968864,0.179101141429632,0,-0.14102463868052,0,-0.081063376320492,0.197312630993621,-0.0105317930982999,-0.106889016507332,-0.0584468268118252,-0.17869406164163,0.0307726349329449,-0.0212413942259699,0.430898389818589,0.0159496113258297,0.651026454207983,0,0.398677955185207,-0.411334632440062,0,-0.0080850257896305,0,0.334355162120707,0,-0.0999735087287407,0,-0.1408128439836,-0.18224291135341,-0.355229055752122,-0.162853855579121,0,-0.105436391408785,0.246242396603196,0,0,0.0333269653551031,0,0.0646547271377723,-0.0124888735115589,0.0299422269623479,0.0821361227950025,0,0.169685127750246,0,0.084060318828564,0.0143404272803986,0.161577404960148,0,0.057545069252699,0.0143937588615336,0.099727611881681,-0.03191075460637,0.084060318828564,0,0.156315941356446,0,0.816406506627868,-0.140245399939171,0.084060318828564,0.084160329118342,0.212356322392104,0,0.37168976418981,0,0,0.13797802291923,0,0.057160203046982,0,0,-0.16582097777026,0,0,0,0.084060318828564,0,0,0,0,0,0,0,0,0.0908631695137183,0.00335750990338241,0.154458903240703,-0.164635875077503,0,0,0,0,0,0,0,0.215021810472412,1.13783960608287,-0.0207318795798039,0.0314414875642827,0,0,0,0,-0.131663083724911,0.112269226789682,0.084060318828564,-0.0478023876690677,0,0,0,0,-0.0861409897892114,0,0,0.042030159414282,0,0.157291353418748,0.199809335130728,0,0,0,-0.27695440160179,0,0,0.084060318828564,0.0401681960170584,-0.0146576158703446,0,0.0804462943562875,0.34772269041245,0,0.0369660924363524,-0.0815818795468414,0,-0.003466397432455,0.568517386498551,0.0869002924866458,0,0,-0.261347131789888,0,0.0076464441103274,-0.118914263932862,0.00169009586289771,0,-0.0020078450824218,0,0,0,0,0,0,0.10119127648465,0.157752894442203,0,0,0,0,0,0,0,0,0,0,0.0759222685002567,0.0622348465821925,0,0,0,0,0,0,0,-0.0241060230789031,-0.277791276179679,0.042030159414282,0,0,0,0,0,0,0,-0.155920150778837,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.119691310531023,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0917027244369639,-0.0741869230642482,0,0,0,0,0,0,0,-0.0598114877336789,0,0,0,0,-0.0298240548804132,0,0,0,-0.0207360659605924,0,-0.076257711257822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107510905236206,0,0,0,0.547208212490837,0,0.215021810472412,-0.0517680008706209,0,0,0.214358897337826,0,0,0,0,0,0,0.0458890275918244,0.154458903240703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0193377680706328,0,0,0,0,0,0,0,-0.0979578962680575,0,0.119259611034634,-0.0920328098005262,0,0,0,0,0,0,0.261197101563404,0.437760714555885,0.0301659774985976,0,0,0,0.053125332753751,0,0,0.0165821885374358,0,0.248728401465504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0692626915198636,0,0,0,0,0,0,0,0,0,0,0,0,0.0772294516203515,0,0,0,0,0,0,0,0,0,0,0,0,0.084060318828564,0,0,0,0,0,0,0,0,0,0.0080187961388655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.0019355808153679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084060318828564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0472380268305642,0,0,0,0,0,0,0,0,0.084060318828564,0,0,0,0,-0.0482220752390542,0,0.0700822710106758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084060318828564,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.084060318828564,0,0,0,0,0,0,0,0,0,0,-0.169550289459941,0,0,0.111172799435884,0,0,0,0,0,0,0,0,0,0,0,0,0.0931387240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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=173.3082 | |rna_weight_ug=173.3082 | ||
|sample_age=2 year old child | |sample_age=2 year old child | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.26833208407695e-206!GO:0005737;cytoplasm;3.70191719033116e-169!GO:0043226;organelle;8.42785879615638e-165!GO:0043229;intracellular organelle;2.22093431401916e-164!GO:0043231;intracellular membrane-bound organelle;7.9687101261459e-163!GO:0043227;membrane-bound organelle;1.20320863380757e-162!GO:0044444;cytoplasmic part;2.22223468803672e-124!GO:0044422;organelle part;2.06540724827379e-111!GO:0044446;intracellular organelle part;6.62434048061898e-110!GO:0032991;macromolecular complex;6.96058808962011e-80!GO:0044238;primary metabolic process;5.45434985475371e-76!GO:0044237;cellular metabolic process;1.13923566986305e-75!GO:0043170;macromolecule metabolic process;7.12571821836057e-74!GO:0005515;protein binding;7.12571821836057e-74!GO:0030529;ribonucleoprotein complex;4.05172178956862e-73!GO:0043233;organelle lumen;1.09841202484109e-61!GO:0031974;membrane-enclosed lumen;1.09841202484109e-61!GO:0003723;RNA binding;4.84931892981049e-58!GO:0005634;nucleus;4.84931892981049e-58!GO:0044428;nuclear part;3.37406136423695e-56!GO:0005739;mitochondrion;1.73718194557966e-55!GO:0019538;protein metabolic process;1.06890485191367e-46!GO:0031090;organelle membrane;1.02937076106673e-44!GO:0005840;ribosome;1.36992472562646e-44!GO:0016043;cellular component organization and biogenesis;3.0251722819123e-43!GO:0015031;protein transport;1.03135027097926e-42!GO:0033036;macromolecule localization;1.24155446497676e-42!GO:0006412;translation;1.61130292082542e-42!GO:0044260;cellular macromolecule metabolic process;2.7557406902354e-42!GO:0044267;cellular protein metabolic process;2.5735971953813e-41!GO:0008104;protein localization;1.37010712262912e-39!GO:0045184;establishment of protein localization;1.88488782595062e-39!GO:0003735;structural constituent of ribosome;2.42586688034593e-39!GO:0006396;RNA processing;2.86326115542306e-39!GO:0043234;protein complex;3.31521180643494e-39!GO:0010467;gene expression;4.32560174907584e-39!GO:0043283;biopolymer metabolic process;3.55973166976717e-38!GO:0044429;mitochondrial part;5.04326998214031e-37!GO:0031981;nuclear lumen;5.19441010590966e-36!GO:0033279;ribosomal subunit;4.50454995529691e-34!GO:0016071;mRNA metabolic process;1.20482540058795e-33!GO:0009059;macromolecule biosynthetic process;1.24025307988957e-33!GO:0009058;biosynthetic process;1.35020529422629e-33!GO:0046907;intracellular transport;4.90309257076469e-33!GO:0005829;cytosol;7.60105850074379e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.60209425535205e-32!GO:0031967;organelle envelope;2.82306496370145e-32!GO:0031975;envelope;4.61112962783263e-32!GO:0044249;cellular biosynthetic process;6.33379638505457e-32!GO:0008380;RNA splicing;5.84544505846199e-31!GO:0006397;mRNA processing;6.38618624381335e-29!GO:0006886;intracellular protein transport;5.28122171076654e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.37956051381288e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.41805881951637e-24!GO:0005740;mitochondrial envelope;3.70533914712249e-24!GO:0065003;macromolecular complex assembly;4.1395992536709e-24!GO:0005654;nucleoplasm;4.55166442758468e-23!GO:0031966;mitochondrial membrane;7.14235543062373e-23!GO:0006996;organelle organization and biogenesis;1.12567930987961e-22!GO:0019866;organelle inner membrane;2.29380671999927e-22!GO:0005681;spliceosome;7.8138034832938e-22!GO:0022607;cellular component assembly;1.17239947305488e-21!GO:0005743;mitochondrial inner membrane;2.58669357522382e-21!GO:0043228;non-membrane-bound organelle;1.34664092354938e-20!GO:0043232;intracellular non-membrane-bound organelle;1.34664092354938e-20!GO:0005783;endoplasmic reticulum;1.48439210845118e-20!GO:0051649;establishment of cellular localization;1.03946804583001e-19!GO:0051641;cellular localization;1.58111892305003e-19!GO:0006457;protein folding;1.89215423123789e-19!GO:0006119;oxidative phosphorylation;1.9009939921784e-19!GO:0044451;nucleoplasm part;2.34844407119051e-19!GO:0048770;pigment granule;2.36526668345074e-19!GO:0042470;melanosome;2.36526668345074e-19!GO:0044445;cytosolic part;2.5717953110019e-19!GO:0003676;nucleic acid binding;4.02454034482872e-19!GO:0044455;mitochondrial membrane part;5.76262106884704e-18!GO:0012505;endomembrane system;6.33965493469987e-18!GO:0015934;large ribosomal subunit;6.33965493469987e-18!GO:0016070;RNA metabolic process;1.35609167342877e-17!GO:0005794;Golgi apparatus;1.64981747005601e-17!GO:0015935;small ribosomal subunit;4.14356143719399e-17!GO:0008134;transcription factor binding;4.26084979497502e-17!GO:0022618;protein-RNA complex assembly;2.26308187802409e-16!GO:0016874;ligase activity;2.79693637929942e-16!GO:0044432;endoplasmic reticulum part;3.09289999675549e-16!GO:0016462;pyrophosphatase activity;4.73752785699344e-16!GO:0006512;ubiquitin cycle;4.74587781479773e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.06442834289482e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;6.46331107454362e-16!GO:0017111;nucleoside-triphosphatase activity;1.19167263854254e-15!GO:0000166;nucleotide binding;1.70351540114855e-15!GO:0031980;mitochondrial lumen;1.85573523148326e-15!GO:0005759;mitochondrial matrix;1.85573523148326e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.09229394521755e-15!GO:0048193;Golgi vesicle transport;5.71227142174802e-15!GO:0006259;DNA metabolic process;6.62299093950882e-15!GO:0019941;modification-dependent protein catabolic process;8.56389411860984e-15!GO:0043632;modification-dependent macromolecule catabolic process;8.56389411860984e-15!GO:0044265;cellular macromolecule catabolic process;9.36759564388045e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.0362140556608e-14!GO:0044257;cellular protein catabolic process;1.22704854420519e-14!GO:0008135;translation factor activity, nucleic acid binding;1.69903844713598e-14!GO:0043285;biopolymer catabolic process;1.80246974550248e-14!GO:0005746;mitochondrial respiratory chain;2.76804505520228e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.28999127239012e-14!GO:0051082;unfolded protein binding;5.80643461549498e-14!GO:0006605;protein targeting;6.7316962434651e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.57710373784027e-14!GO:0005730;nucleolus;1.12998010506079e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.94336685725886e-13!GO:0051186;cofactor metabolic process;4.13022038305849e-13!GO:0009057;macromolecule catabolic process;4.54253301741713e-13!GO:0030163;protein catabolic process;4.64339664245823e-13!GO:0016192;vesicle-mediated transport;9.12795596335597e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.1046446409564e-12!GO:0003954;NADH dehydrogenase activity;1.1046446409564e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.1046446409564e-12!GO:0005761;mitochondrial ribosome;1.43575503075212e-12!GO:0000313;organellar ribosome;1.43575503075212e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.63043034350633e-12!GO:0005793;ER-Golgi intermediate compartment;3.89065641188452e-12!GO:0003712;transcription cofactor activity;5.26756550954023e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.87419329468151e-11!GO:0044248;cellular catabolic process;2.40748404026707e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.68959346240658e-11!GO:0000375;RNA splicing, via transesterification reactions;2.68959346240658e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.68959346240658e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.80298151790886e-11!GO:0042773;ATP synthesis coupled electron transport;3.80298151790886e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.97069902770535e-11!GO:0003743;translation initiation factor activity;5.27464131816666e-11!GO:0030964;NADH dehydrogenase complex (quinone);5.40894604079488e-11!GO:0045271;respiratory chain complex I;5.40894604079488e-11!GO:0005747;mitochondrial respiratory chain complex I;5.40894604079488e-11!GO:0043412;biopolymer modification;9.5316660710433e-11!GO:0005789;endoplasmic reticulum membrane;1.12938894706659e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.29055653603249e-10!GO:0017076;purine nucleotide binding;1.33974451557128e-10!GO:0032553;ribonucleotide binding;1.45237075053856e-10!GO:0032555;purine ribonucleotide binding;1.45237075053856e-10!GO:0050794;regulation of cellular process;1.49834618710245e-10!GO:0006413;translational initiation;2.81858922033771e-10!GO:0006732;coenzyme metabolic process;3.13068034417463e-10!GO:0012501;programmed cell death;3.37157385778918e-10!GO:0006446;regulation of translational initiation;5.57293235915363e-10!GO:0006366;transcription from RNA polymerase II promoter;5.64801726227e-10!GO:0009055;electron carrier activity;5.79603819560018e-10!GO:0007049;cell cycle;6.1283270895316e-10!GO:0006464;protein modification process;6.73049328135381e-10!GO:0006915;apoptosis;7.92419648299673e-10!GO:0006974;response to DNA damage stimulus;8.97200698913857e-10!GO:0019787;small conjugating protein ligase activity;1.00673463502477e-09!GO:0008639;small protein conjugating enzyme activity;1.04250027278693e-09!GO:0016604;nuclear body;1.17834663905246e-09!GO:0048523;negative regulation of cellular process;1.20177735748325e-09!GO:0004842;ubiquitin-protein ligase activity;1.62261027337606e-09!GO:0008219;cell death;2.78194178129311e-09!GO:0016265;death;2.78194178129311e-09!GO:0009259;ribonucleotide metabolic process;3.14423674667123e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.35818985286764e-09!GO:0005635;nuclear envelope;6.78590208431668e-09!GO:0006913;nucleocytoplasmic transport;7.48336971725994e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.15947791639907e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.01906709877684e-08!GO:0042254;ribosome biogenesis and assembly;1.074471221577e-08!GO:0031965;nuclear membrane;1.12881216007255e-08!GO:0009150;purine ribonucleotide metabolic process;1.36122750561616e-08!GO:0051169;nuclear transport;1.39830363390504e-08!GO:0016881;acid-amino acid ligase activity;1.40274339464449e-08!GO:0006163;purine nucleotide metabolic process;1.55644852728676e-08!GO:0008565;protein transporter activity;1.99719071760486e-08!GO:0009260;ribonucleotide biosynthetic process;2.4632647028784e-08!GO:0016607;nuclear speck;2.62740456877939e-08!GO:0003924;GTPase activity;3.0626032348864e-08!GO:0043687;post-translational protein modification;3.20008270232872e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.45128824902807e-08!GO:0048519;negative regulation of biological process;3.86232716482636e-08!GO:0005788;endoplasmic reticulum lumen;3.88978725439464e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.98854511864688e-08!GO:0006164;purine nucleotide biosynthetic process;4.23642096902911e-08!GO:0005768;endosome;4.8673397610991e-08!GO:0045333;cellular respiration;5.2863524585559e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.50919469484463e-08!GO:0009141;nucleoside triphosphate metabolic process;5.66626473347968e-08!GO:0050789;regulation of biological process;5.79327981741654e-08!GO:0009060;aerobic respiration;6.24243781240476e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.26442195533836e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.26442195533836e-08!GO:0051246;regulation of protein metabolic process;1.13755368732461e-07!GO:0015986;ATP synthesis coupled proton transport;1.27356173955977e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.27356173955977e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.76349912389594e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.76349912389594e-07!GO:0042623;ATPase activity, coupled;1.79700099501622e-07!GO:0006281;DNA repair;1.79700099501622e-07!GO:0006461;protein complex assembly;1.8498385077531e-07!GO:0017038;protein import;1.86357396281119e-07!GO:0022402;cell cycle process;2.03861700909219e-07!GO:0044453;nuclear membrane part;2.31132043545408e-07!GO:0009719;response to endogenous stimulus;2.47225676048479e-07!GO:0006399;tRNA metabolic process;2.52022006025951e-07!GO:0005524;ATP binding;2.53212675525019e-07!GO:0030120;vesicle coat;2.56088160870672e-07!GO:0030662;coated vesicle membrane;2.56088160870672e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.76077879572338e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.76077879572338e-07!GO:0016887;ATPase activity;2.97100607680059e-07!GO:0044431;Golgi apparatus part;2.99527395871146e-07!GO:0032559;adenyl ribonucleotide binding;3.57003010795303e-07!GO:0030554;adenyl nucleotide binding;3.96521671136467e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.1382763746625e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.1382763746625e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.1382763746625e-07!GO:0046034;ATP metabolic process;4.45759295376447e-07!GO:0003714;transcription corepressor activity;4.62769252473098e-07!GO:0043038;amino acid activation;5.12259032232965e-07!GO:0006418;tRNA aminoacylation for protein translation;5.12259032232965e-07!GO:0043039;tRNA aminoacylation;5.12259032232965e-07!GO:0065002;intracellular protein transport across a membrane;6.43022033107413e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.51466118025556e-07!GO:0019829;cation-transporting ATPase activity;7.74925416175199e-07!GO:0048475;coated membrane;8.01123609406786e-07!GO:0030117;membrane coat;8.01123609406786e-07!GO:0008361;regulation of cell size;1.15547072270734e-06!GO:0016491;oxidoreductase activity;1.19623659493321e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.46413149073065e-06!GO:0004386;helicase activity;1.49134849062045e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.50838936877411e-06!GO:0051726;regulation of cell cycle;1.51579560815117e-06!GO:0006099;tricarboxylic acid cycle;1.51579560815117e-06!GO:0046356;acetyl-CoA catabolic process;1.51579560815117e-06!GO:0009056;catabolic process;1.61889139375159e-06!GO:0000074;regulation of progression through cell cycle;1.64217920369443e-06!GO:0051187;cofactor catabolic process;1.69210627452043e-06!GO:0006754;ATP biosynthetic process;1.70496648328024e-06!GO:0006753;nucleoside phosphate metabolic process;1.70496648328024e-06!GO:0008026;ATP-dependent helicase activity;1.74998397300991e-06!GO:0016049;cell growth;1.80935287284941e-06!GO:0032446;protein modification by small protein conjugation;1.81251890646689e-06!GO:0009109;coenzyme catabolic process;2.27626568078694e-06!GO:0016567;protein ubiquitination;2.60706078006426e-06!GO:0043067;regulation of programmed cell death;2.71526221939255e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.71526221939255e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.73786781876088e-06!GO:0042981;regulation of apoptosis;2.89770632911098e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.96400800724912e-06!GO:0007005;mitochondrion organization and biogenesis;3.19096945485768e-06!GO:0051188;cofactor biosynthetic process;3.61496120259501e-06!GO:0005525;GTP binding;3.81564906446723e-06!GO:0005667;transcription factor complex;3.81816253725552e-06!GO:0031252;leading edge;4.21547078717849e-06!GO:0031324;negative regulation of cellular metabolic process;4.32818101131907e-06!GO:0000151;ubiquitin ligase complex;4.39376336285765e-06!GO:0043069;negative regulation of programmed cell death;4.4149403499752e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.55544170826566e-06!GO:0005773;vacuole;4.88142192507484e-06!GO:0051789;response to protein stimulus;4.88142192507484e-06!GO:0006986;response to unfolded protein;4.88142192507484e-06!GO:0005643;nuclear pore;5.09027418441504e-06!GO:0006084;acetyl-CoA metabolic process;5.19207996179814e-06!GO:0016564;transcription repressor activity;5.57005175138176e-06!GO:0045786;negative regulation of progression through cell cycle;5.80859628508433e-06!GO:0005798;Golgi-associated vesicle;5.80859628508433e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;5.91353725918425e-06!GO:0019222;regulation of metabolic process;5.9273955195734e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.9273955195734e-06!GO:0044440;endosomal part;6.54822005124137e-06!GO:0010008;endosome membrane;6.54822005124137e-06!GO:0050657;nucleic acid transport;6.54899154272741e-06!GO:0051236;establishment of RNA localization;6.54899154272741e-06!GO:0050658;RNA transport;6.54899154272741e-06!GO:0006916;anti-apoptosis;7.03232937823075e-06!GO:0043066;negative regulation of apoptosis;7.62389073301268e-06!GO:0006403;RNA localization;7.72102240243806e-06!GO:0000245;spliceosome assembly;9.01235438592415e-06!GO:0009117;nucleotide metabolic process;9.22384619420375e-06!GO:0000278;mitotic cell cycle;9.97495996096771e-06!GO:0006613;cotranslational protein targeting to membrane;1.18223722482429e-05!GO:0004298;threonine endopeptidase activity;1.28929247769818e-05!GO:0045259;proton-transporting ATP synthase complex;1.37515777206631e-05!GO:0006323;DNA packaging;1.37877002116607e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.45006414560519e-05!GO:0003713;transcription coactivator activity;1.45006414560519e-05!GO:0001558;regulation of cell growth;1.46093284876393e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.70834900352709e-05!GO:0003697;single-stranded DNA binding;1.78924419546006e-05!GO:0032561;guanyl ribonucleotide binding;1.84674346615645e-05!GO:0019001;guanyl nucleotide binding;1.84674346615645e-05!GO:0031988;membrane-bound vesicle;2.09817533327765e-05!GO:0043566;structure-specific DNA binding;2.15088200414474e-05!GO:0006752;group transfer coenzyme metabolic process;2.18108145655646e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.46825715546895e-05!GO:0030133;transport vesicle;2.49358583870974e-05!GO:0051276;chromosome organization and biogenesis;2.7592630353776e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.84659879936454e-05!GO:0000323;lytic vacuole;3.03931664995575e-05!GO:0005764;lysosome;3.03931664995575e-05!GO:0000139;Golgi membrane;3.08996658368341e-05!GO:0046930;pore complex;3.19683146916224e-05!GO:0005770;late endosome;3.20167398881933e-05!GO:0030867;rough endoplasmic reticulum membrane;3.23464658766376e-05!GO:0006364;rRNA processing;3.26228114592822e-05!GO:0009892;negative regulation of metabolic process;3.62583143593066e-05!GO:0003724;RNA helicase activity;3.67151473488113e-05!GO:0051170;nuclear import;3.87621330300844e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.89895676624903e-05!GO:0006606;protein import into nucleus;4.02035842067766e-05!GO:0016072;rRNA metabolic process;4.51177374437093e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.62964013921292e-05!GO:0016563;transcription activator activity;5.67777538142891e-05!GO:0005769;early endosome;5.68602194679705e-05!GO:0031982;vesicle;6.01853798488198e-05!GO:0008654;phospholipid biosynthetic process;6.09929471966523e-05!GO:0009108;coenzyme biosynthetic process;6.51652396610216e-05!GO:0005791;rough endoplasmic reticulum;7.20820496392032e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.25809140225753e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.4507360692708e-05!GO:0031410;cytoplasmic vesicle;7.98159888802137e-05!GO:0016859;cis-trans isomerase activity;9.97665183727174e-05!GO:0030029;actin filament-based process;0.000104160190590764!GO:0016568;chromatin modification;0.000107367381021551!GO:0006091;generation of precursor metabolites and energy;0.000119543381491502!GO:0005762;mitochondrial large ribosomal subunit;0.000121615988036108!GO:0000315;organellar large ribosomal subunit;0.000121615988036108!GO:0016787;hydrolase activity;0.000132138197806634!GO:0019899;enzyme binding;0.000132138197806634!GO:0043021;ribonucleoprotein binding;0.000139154273911216!GO:0016853;isomerase activity;0.000139668173033198!GO:0051028;mRNA transport;0.000141449868533783!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000144583523266397!GO:0045454;cell redox homeostasis;0.000151956913765533!GO:0065004;protein-DNA complex assembly;0.000164201379775315!GO:0033116;ER-Golgi intermediate compartment membrane;0.000172411647712154!GO:0015630;microtubule cytoskeleton;0.000177269845245834!GO:0048522;positive regulation of cellular process;0.000178447000512283!GO:0005905;coated pit;0.000179449338009494!GO:0006612;protein targeting to membrane;0.000202241335795727!GO:0065007;biological regulation;0.000203329909238468!GO:0043623;cellular protein complex assembly;0.000221059179821127!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000235550934666303!GO:0016481;negative regulation of transcription;0.000243399025390462!GO:0051427;hormone receptor binding;0.000260309247307171!GO:0006260;DNA replication;0.000308452689634369!GO:0008092;cytoskeletal protein binding;0.000311793195397658!GO:0008250;oligosaccharyl transferase complex;0.000333575593780366!GO:0007243;protein kinase cascade;0.000365484667700398!GO:0007050;cell cycle arrest;0.000376699980523159!GO:0004576;oligosaccharyl transferase activity;0.000456744760165942!GO:0006793;phosphorus metabolic process;0.000472365873937094!GO:0006796;phosphate metabolic process;0.000472365873937094!GO:0007010;cytoskeleton organization and biogenesis;0.000474991860980729!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000485382430673384!GO:0035257;nuclear hormone receptor binding;0.000503178581478245!GO:0005813;centrosome;0.000547197416880141!GO:0005885;Arp2/3 protein complex;0.000594289239058589!GO:0030663;COPI coated vesicle membrane;0.000630090089564371!GO:0030126;COPI vesicle coat;0.000630090089564371!GO:0016310;phosphorylation;0.000652545766853284!GO:0031968;organelle outer membrane;0.000727758263522156!GO:0000314;organellar small ribosomal subunit;0.000728418281544063!GO:0005763;mitochondrial small ribosomal subunit;0.000728418281544063!GO:0046474;glycerophospholipid biosynthetic process;0.0008672521194204!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000873089545008169!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000873089545008169!GO:0044262;cellular carbohydrate metabolic process;0.000873978474395943!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000901895190413912!GO:0019867;outer membrane;0.000904653014130043!GO:0005815;microtubule organizing center;0.000915660117175659!GO:0019843;rRNA binding;0.000919746264173427!GO:0031323;regulation of cellular metabolic process;0.000940409568877063!GO:0046489;phosphoinositide biosynthetic process;0.000968204683724674!GO:0051920;peroxiredoxin activity;0.00101211403137665!GO:0007264;small GTPase mediated signal transduction;0.00111454001533262!GO:0040008;regulation of growth;0.00127920794573492!GO:0006333;chromatin assembly or disassembly;0.00144505466641202!GO:0005694;chromosome;0.00144682118733057!GO:0016740;transferase activity;0.00151144386971483!GO:0008186;RNA-dependent ATPase activity;0.00155529704136098!GO:0006891;intra-Golgi vesicle-mediated transport;0.00155795928408276!GO:0018196;peptidyl-asparagine modification;0.00156231663272885!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00156231663272885!GO:0030137;COPI-coated vesicle;0.0016104525320933!GO:0016779;nucleotidyltransferase activity;0.00161147669132374!GO:0051329;interphase of mitotic cell cycle;0.00168695176528973!GO:0005048;signal sequence binding;0.00169239300490324!GO:0030521;androgen receptor signaling pathway;0.00170813150920659!GO:0030027;lamellipodium;0.00172315982443632!GO:0051168;nuclear export;0.00182703725186077!GO:0003899;DNA-directed RNA polymerase activity;0.00185568025768027!GO:0005741;mitochondrial outer membrane;0.00190882581977627!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00193165758423167!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00195198157288249!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00195198157288249!GO:0048500;signal recognition particle;0.00211954305256508!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00226309647537884!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00226309647537884!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00226309647537884!GO:0006383;transcription from RNA polymerase III promoter;0.00228004041020156!GO:0003729;mRNA binding;0.002481982128053!GO:0016363;nuclear matrix;0.00248700420017698!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00249526462304149!GO:0006350;transcription;0.00272449797163703!GO:0044420;extracellular matrix part;0.00277971822509184!GO:0043681;protein import into mitochondrion;0.00286556643291576!GO:0043284;biopolymer biosynthetic process;0.00291102163390736!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00296580388146788!GO:0009165;nucleotide biosynthetic process;0.00309888333827926!GO:0006839;mitochondrial transport;0.00322635534790253!GO:0004177;aminopeptidase activity;0.00351254383187056!GO:0051252;regulation of RNA metabolic process;0.00356669290442487!GO:0022403;cell cycle phase;0.00359683086067295!GO:0006414;translational elongation;0.00361452438742424!GO:0030658;transport vesicle membrane;0.00377362280039592!GO:0003690;double-stranded DNA binding;0.00380105768497357!GO:0051325;interphase;0.00386511818330162!GO:0048468;cell development;0.00402233348025061!GO:0004004;ATP-dependent RNA helicase activity;0.00403699411125693!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0041964620088398!GO:0015399;primary active transmembrane transporter activity;0.0041964620088398!GO:0031072;heat shock protein binding;0.00422631126000137!GO:0016197;endosome transport;0.00431188648395906!GO:0016044;membrane organization and biogenesis;0.00453992531231323!GO:0003746;translation elongation factor activity;0.00460099626515228!GO:0030134;ER to Golgi transport vesicle;0.00463494466494626!GO:0010468;regulation of gene expression;0.00470795588467659!GO:0048471;perinuclear region of cytoplasm;0.00479345470166871!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.004977499739707!GO:0045047;protein targeting to ER;0.004977499739707!GO:0006402;mRNA catabolic process;0.00501655910821323!GO:0008047;enzyme activator activity;0.0051099064843779!GO:0006509;membrane protein ectodomain proteolysis;0.00528756180769227!GO:0033619;membrane protein proteolysis;0.00528756180769227!GO:0051087;chaperone binding;0.00564695490616202!GO:0051301;cell division;0.00590684665892093!GO:0030127;COPII vesicle coat;0.00595255074067266!GO:0012507;ER to Golgi transport vesicle membrane;0.00595255074067266!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00607843496916216!GO:0001726;ruffle;0.00608864774633196!GO:0005583;fibrillar collagen;0.00609135714218792!GO:0046483;heterocycle metabolic process;0.00615597229498953!GO:0051128;regulation of cellular component organization and biogenesis;0.00619561750800312!GO:0030880;RNA polymerase complex;0.00622229001898305!GO:0045892;negative regulation of transcription, DNA-dependent;0.00622229001898305!GO:0031901;early endosome membrane;0.00622246306912792!GO:0048518;positive regulation of biological process;0.00624190708269455!GO:0005581;collagen;0.00631158732163689!GO:0035258;steroid hormone receptor binding;0.0064831713936161!GO:0006497;protein amino acid lipidation;0.00668866774458937!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00670272359226623!GO:0008154;actin polymerization and/or depolymerization;0.00678719954975394!GO:0043488;regulation of mRNA stability;0.00686834127288812!GO:0043487;regulation of RNA stability;0.00686834127288812!GO:0000087;M phase of mitotic cell cycle;0.00695121039265591!GO:0009967;positive regulation of signal transduction;0.00735580893169254!GO:0006626;protein targeting to mitochondrion;0.007436299710769!GO:0050681;androgen receptor binding;0.00779632757266562!GO:0044427;chromosomal part;0.00781767774380675!GO:0017166;vinculin binding;0.00802529842226224!GO:0030132;clathrin coat of coated pit;0.00805175224368365!GO:0003711;transcription elongation regulator activity;0.00807260764639954!GO:0048487;beta-tubulin binding;0.00808247634262091!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00817911040504722!GO:0008312;7S RNA binding;0.00825042736521168!GO:0007067;mitosis;0.00827028206405604!GO:0050811;GABA receptor binding;0.0082931618172955!GO:0051540;metal cluster binding;0.0082931618172955!GO:0051536;iron-sulfur cluster binding;0.0082931618172955!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00835096975614191!GO:0000785;chromatin;0.00835280203752051!GO:0030660;Golgi-associated vesicle membrane;0.0084262106785578!GO:0030041;actin filament polymerization;0.00845708526275292!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00854378626625672!GO:0001527;microfibril;0.00857711907290918!GO:0006352;transcription initiation;0.00880831065753113!GO:0000049;tRNA binding;0.00897140347146425!GO:0005869;dynactin complex;0.00906389047557339!GO:0051287;NAD binding;0.0097446869948956!GO:0031543;peptidyl-proline dioxygenase activity;0.00980416167306488!GO:0030118;clathrin coat;0.00983211601415685!GO:0006506;GPI anchor biosynthetic process;0.0100291788503002!GO:0045792;negative regulation of cell size;0.0103814732982601!GO:0006740;NADPH regeneration;0.0103814732982601!GO:0006098;pentose-phosphate shunt;0.0103814732982601!GO:0045941;positive regulation of transcription;0.010468476150325!GO:0015631;tubulin binding;0.0104909337733156!GO:0030176;integral to endoplasmic reticulum membrane;0.0106767862315564!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0110220992777752!GO:0045893;positive regulation of transcription, DNA-dependent;0.0111101596400896!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0113718926111307!GO:0016251;general RNA polymerase II transcription factor activity;0.0114839843273319!GO:0006289;nucleotide-excision repair;0.0117954897528198!GO:0006892;post-Golgi vesicle-mediated transport;0.0117954897528198!GO:0007006;mitochondrial membrane organization and biogenesis;0.012181108099523!GO:0000059;protein import into nucleus, docking;0.0122074461184531!GO:0003684;damaged DNA binding;0.0122167441792354!GO:0006650;glycerophospholipid metabolic process;0.0122718908741336!GO:0065009;regulation of a molecular function;0.0122725716033359!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0122725716033359!GO:0000428;DNA-directed RNA polymerase complex;0.0122725716033359!GO:0006354;RNA elongation;0.0122725716033359!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0124602383578322!GO:0046467;membrane lipid biosynthetic process;0.0126508224879026!GO:0007160;cell-matrix adhesion;0.0128513072873522!GO:0006505;GPI anchor metabolic process;0.0131719732450603!GO:0008180;signalosome;0.0131719732450603!GO:0000339;RNA cap binding;0.0133327664378741!GO:0030308;negative regulation of cell growth;0.0134129549842554!GO:0030145;manganese ion binding;0.0135804128538858!GO:0006401;RNA catabolic process;0.0137625033594515!GO:0000082;G1/S transition of mitotic cell cycle;0.0143854147167217!GO:0031589;cell-substrate adhesion;0.0144292221232017!GO:0022408;negative regulation of cell-cell adhesion;0.014489865747874!GO:0030384;phosphoinositide metabolic process;0.0149089321131842!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0149425055253128!GO:0006595;polyamine metabolic process;0.0149601313985024!GO:0032984;macromolecular complex disassembly;0.0150362413319098!GO:0015992;proton transport;0.0150765173659208!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0150967740249181!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0150967740249181!GO:0030518;steroid hormone receptor signaling pathway;0.0152257500218363!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0158236400895697!GO:0015002;heme-copper terminal oxidase activity;0.0158236400895697!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0158236400895697!GO:0004129;cytochrome-c oxidase activity;0.0158236400895697!GO:0006818;hydrogen transport;0.0158702591764949!GO:0007034;vacuolar transport;0.0161403403069714!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0165157979952835!GO:0005595;collagen type XII;0.0165157979952835!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0167260308378238!GO:0000209;protein polyubiquitination;0.0169399889415205!GO:0031529;ruffle organization and biogenesis;0.017119537873113!GO:0001952;regulation of cell-matrix adhesion;0.0175025824864058!GO:0030032;lamellipodium biogenesis;0.0175555421761793!GO:0031418;L-ascorbic acid binding;0.0176166279263647!GO:0008484;sulfuric ester hydrolase activity;0.0176272809807679!GO:0043624;cellular protein complex disassembly;0.0176545544329788!GO:0019798;procollagen-proline dioxygenase activity;0.0177338802465575!GO:0043433;negative regulation of transcription factor activity;0.0178911133085942!GO:0016272;prefoldin complex;0.0185260066722294!GO:0051539;4 iron, 4 sulfur cluster binding;0.0190954012653316!GO:0005520;insulin-like growth factor binding;0.0197976283354728!GO:0005862;muscle thin filament tropomyosin;0.0199515708282867!GO:0043022;ribosome binding;0.0199854340653255!GO:0042158;lipoprotein biosynthetic process;0.0200095389545465!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0203431711899125!GO:0003779;actin binding;0.0206711663300322!GO:0008022;protein C-terminus binding;0.0208298410517795!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0208298410517795!GO:0033043;regulation of organelle organization and biogenesis;0.0208298410517795!GO:0045045;secretory pathway;0.0209093863534472!GO:0022890;inorganic cation transmembrane transporter activity;0.0209167510944964!GO:0031625;ubiquitin protein ligase binding;0.0210619153126766!GO:0005684;U2-dependent spliceosome;0.0210619153126766!GO:0006984;ER-nuclear signaling pathway;0.0213708932401487!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0215023494564071!GO:0030833;regulation of actin filament polymerization;0.021565422274859!GO:0001953;negative regulation of cell-matrix adhesion;0.0218433833825294!GO:0051101;regulation of DNA binding;0.0226759672520243!GO:0043492;ATPase activity, coupled to movement of substances;0.0234257434707972!GO:0033673;negative regulation of kinase activity;0.0240480310883696!GO:0006469;negative regulation of protein kinase activity;0.0240480310883696!GO:0008652;amino acid biosynthetic process;0.024167580828434!GO:0007021;tubulin folding;0.024194457044063!GO:0008320;protein transmembrane transporter activity;0.0250345128772177!GO:0005096;GTPase activator activity;0.0253797749329429!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.025846073157105!GO:0050662;coenzyme binding;0.0258640159270951!GO:0005832;chaperonin-containing T-complex;0.0271074092581917!GO:0006334;nucleosome assembly;0.0271074092581917!GO:0003702;RNA polymerase II transcription factor activity;0.0274627430887148!GO:0043241;protein complex disassembly;0.0275133943974187!GO:0003756;protein disulfide isomerase activity;0.0279435063855356!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0279435063855356!GO:0031902;late endosome membrane;0.0279435063855356!GO:0016126;sterol biosynthetic process;0.028178897488647!GO:0003923;GPI-anchor transamidase activity;0.0289632910926287!GO:0016255;attachment of GPI anchor to protein;0.0289632910926287!GO:0042765;GPI-anchor transamidase complex;0.0289632910926287!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0293221373022978!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0297250964930279!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0297250964930279!GO:0006376;mRNA splice site selection;0.0297976591552844!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0297976591552844!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0297976591552844!GO:0043065;positive regulation of apoptosis;0.0301929175440277!GO:0035035;histone acetyltransferase binding;0.0303100514340268!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0305903473939028!GO:0031124;mRNA 3'-end processing;0.0309127947416842!GO:0007040;lysosome organization and biogenesis;0.0314899941055361!GO:0045926;negative regulation of growth;0.0316420192677787!GO:0051098;regulation of binding;0.0317198679058093!GO:0042802;identical protein binding;0.031726398431101!GO:0006302;double-strand break repair;0.0317510363596732!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0324101201525006!GO:0032774;RNA biosynthetic process;0.0329702661668774!GO:0006417;regulation of translation;0.0330321139197341!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0337457475215743!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0343265660684213!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0343265660684213!GO:0000902;cell morphogenesis;0.0345388029111123!GO:0032989;cellular structure morphogenesis;0.0345388029111123!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0348806859737605!GO:0006351;transcription, DNA-dependent;0.0348806859737605!GO:0005774;vacuolar membrane;0.0352381172642842!GO:0043068;positive regulation of programmed cell death;0.0352381172642842!GO:0008139;nuclear localization sequence binding;0.0353178739396256!GO:0051348;negative regulation of transferase activity;0.0354896626694055!GO:0006979;response to oxidative stress;0.0354896626694055!GO:0008632;apoptotic program;0.0354896626694055!GO:0008033;tRNA processing;0.03625407324449!GO:0044452;nucleolar part;0.036346919579467!GO:0051052;regulation of DNA metabolic process;0.0387078969323645!GO:0005801;cis-Golgi network;0.0389087506439124!GO:0007030;Golgi organization and biogenesis;0.0393080238490681!GO:0016408;C-acyltransferase activity;0.0395570280156006!GO:0031497;chromatin assembly;0.0399508006078923!GO:0005586;collagen type III;0.0405603206837812!GO:0045936;negative regulation of phosphate metabolic process;0.0407745702452596!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.04146653468632!GO:0019752;carboxylic acid metabolic process;0.041576927718529!GO:0006611;protein export from nucleus;0.0416445301522457!GO:0006739;NADP metabolic process;0.0417158063637244!GO:0005588;collagen type V;0.0418860021427367!GO:0005591;collagen type VIII;0.0421600951926112!GO:0005598;short-chain collagen;0.0421600951926112!GO:0007265;Ras protein signal transduction;0.0423459391537138!GO:0000118;histone deacetylase complex;0.0428892536340944!GO:0009112;nucleobase metabolic process;0.043045265741332!GO:0030659;cytoplasmic vesicle membrane;0.0431372119202634!GO:0017134;fibroblast growth factor binding;0.0441185806717887!GO:0008610;lipid biosynthetic process;0.0441888536689709!GO:0007033;vacuole organization and biogenesis;0.0441888536689709!GO:0000096;sulfur amino acid metabolic process;0.0441888536689709!GO:0006082;organic acid metabolic process;0.0451682163246891!GO:0051271;negative regulation of cell motility;0.0460502533309924!GO:0030119;AP-type membrane coat adaptor complex;0.0464036658491362!GO:0033559;unsaturated fatty acid metabolic process;0.0472334391935983!GO:0006636;unsaturated fatty acid biosynthetic process;0.0472334391935983!GO:0006007;glucose catabolic process;0.0474921364691044!GO:0009116;nucleoside metabolic process;0.0477685820626955!GO:0006778;porphyrin metabolic process;0.0479958320282566!GO:0033013;tetrapyrrole metabolic process;0.0479958320282566!GO:0030125;clathrin vesicle coat;0.0489692934727045!GO:0030665;clathrin coated vesicle membrane;0.0489692934727045!GO:0005100;Rho GTPase activator activity;0.0493291252383903!GO:0008097;5S rRNA binding;0.0494094300253159!GO:0031123;RNA 3'-end processing;0.0494396407503035 | |||
|sample_id=11556 | |sample_id=11556 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=NKX3-1:2.34299823391;MYBL2:1.86364023426;TAL1_TCF{3,4,12}:1.80111825962;ESR1:1.76004367515;HBP1_HMGB_SSRP1_UBTF:1.75325873706;ZNF238:1.64232016522;GZF1:1.63986956165;NKX3-2:1.53384668703;HMGA1,2:1.52251025542;TFAP4:1.49451428852;ATF6:1.46188238474;ALX4:1.43445920766;HIF1A:1.41425779837;TEF:1.41241750457;GCM1,2:1.38923391855;FOXD3:1.32886701786;FOXL1:1.30605101037;NKX2-2,8:1.30296630245;UFEwm:1.24848190468;TEAD1:1.23199292095;TP53:1.21727691058;KLF4:1.10536449511;HOX{A5,B5}:1.09783096288;XBP1:1.04179225379;NR3C1:1.02878785807;PDX1:1.02661275807;EVI1:1.01771099277;FOXO1,3,4:0.99620930929;SRF:0.98775245688;NFATC1..3:0.9557853362;ZNF384:0.925554683501;HAND1,2:0.920690153669;PRDM1:0.90066234009;IKZF1:0.894228489232;NKX2-3_NKX2-5:0.876039806234;TFAP2{A,C}:0.87018865952;GATA4:0.824296009056;GTF2A1,2:0.813976055961;GFI1B:0.808791525479;NFE2L1:0.800242368155;MAFB:0.799745558252;DBP:0.790285150197;AIRE:0.778474173699;NANOG{mouse}:0.77095217876;GLI1..3:0.759639751749;GTF2I:0.731059479201;NFIX:0.725152665473;HOX{A4,D4}:0.721126498369;HES1:0.705483612697;MAZ:0.694616613078;HMX1:0.692504510501;PAX8:0.691393162292;NKX2-1,4:0.678226976782;MZF1:0.66676600291;EBF1:0.656897350419;HSF1,2:0.646548535303;SOX17:0.636657080939;EN1,2:0.62572140291;TLX1..3_NFIC{dimer}:0.612170861793;PATZ1:0.595587131901;MTE{core}:0.593893858695;TBX4,5:0.590388671728;RXRA_VDR{dimer}:0.580302021101;PAX5:0.578626769986;HLF:0.565424017142;TFCP2:0.547041245903;FOXA2:0.541044749912;ZIC1..3:0.538223717942;SMAD1..7,9:0.524560880833;NR6A1:0.494635254928;NR1H4:0.485684974256;PAX1,9:0.480871096487;RXR{A,B,G}:0.467137449554;TFAP2B:0.460518504107;POU3F1..4:0.453666527881;SPZ1:0.413847396122;NFE2L2:0.35866176053;YY1:0.353386193256;PRRX1,2:0.319904887832;STAT1,3:0.318408606557;STAT5{A,B}:0.307443950649;SOX5:0.281075454791;EP300:0.271271806144;RREB1:0.254328610137;MYFfamily:0.246107229394;HOX{A6,A7,B6,B7}:0.238872306507;GFI1:0.238658532563;BPTF:0.221818930657;NKX6-1,2:0.220962345122;ADNP_IRX_SIX_ZHX:0.219440237911;LEF1_TCF7_TCF7L1,2:0.201821397106;LHX3,4:0.182133766968;IRF1,2:0.170383336314;ZNF148:0.169996138538;HIC1:0.161717293472;CEBPA,B_DDIT3:0.158995488705;DMAP1_NCOR{1,2}_SMARC:0.141485964889;EGR1..3:0.125304714067;NRF1:0.0950718706345;RFX1:0.0654921868831;XCPE1{core}:0.0635242294265;RUNX1..3:0.0625844268714;AHR_ARNT_ARNT2:0.056298662023;MEF2{A,B,C,D}:0.0551562917586;CDC5L:0.0542430016471;SP1:0.0369060133748;NHLH1,2:0.0181408339055;TOPORS:0.0126292319478;STAT2,4,6:0.0102453780875;ELK1,4_GABP{A,B1}:-0.00111775441453;POU5F1:-0.0168902843083;POU6F1:-0.0281592399724;NFE2:-0.0299609040839;TFDP1:-0.0313121253488;ZNF143:-0.0604464476557;ALX1:-0.0659194578077;BACH2:-0.0756309472781;TBP:-0.0816201936494;FOS_FOS{B,L1}_JUN{B,D}:-0.0868517343825;ZFP161:-0.0941702830474;FOX{D1,D2}:-0.0993824015924;SOX2:-0.101749244894;MED-1{core}:-0.117181527407;POU1F1:-0.122595489423;HNF1A:-0.150422745907;PAX4:-0.186763005818;REST:-0.214488307313;CREB1:-0.234484005497;ZBTB6:-0.239427799064;ZBTB16:-0.248268327295;ARID5B:-0.251466147048;MTF1:-0.263394403641;FOSL2:-0.270530887457;ZNF423:-0.285361306974;TLX2:-0.292312179644;VSX1,2:-0.335331923828;MYB:-0.335967421866;CRX:-0.361490500047;T:-0.370428819097;CUX2:-0.394941517953;RBPJ:-0.395251123075;PAX3,7:-0.401692783858;JUN:-0.407827705774;HNF4A_NR2F1,2:-0.421914111418;ATF4:-0.461622143319;FOX{I1,J2}:-0.46544869729;NFKB1_REL_RELA:-0.481807286576;CDX1,2,4:-0.481809244941;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.512103604794;ONECUT1,2:-0.52189234879;SPI1:-0.524607401948;NFIL3:-0.52668203631;TGIF1:-0.54735377561;bHLH_family:-0.551913259387;FOXM1:-0.552536283243;E2F1..5:-0.558902745568;PBX1:-0.560465465882;SREBF1,2:-0.616446680499;FOXN1:-0.617912769396;ATF2:-0.630651738063;FOX{F1,F2,J1}:-0.63380856111;ETS1,2:-0.637354898402;ELF1,2,4:-0.638305112148;PAX2:-0.653822528084;IKZF2:-0.660662008793;PPARG:-0.670904288975;IRF7:-0.671356268322;ATF5_CREB3:-0.672493524222;SPIB:-0.701095340276;SOX{8,9,10}:-0.737093432538;BREu{core}:-0.756368382537;RFX2..5_RFXANK_RFXAP:-0.773185869603;FOXP1:-0.808163134105;OCT4_SOX2{dimer}:-0.827772576357;PAX6:-0.83344085186;FOXP3:-0.835530298485;NR5A1,2:-0.840695304189;NFY{A,B,C}:-0.842867326426;SNAI1..3:-0.855034699637;ZEB1:-0.939558468131;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.940213049962;GATA6:-0.981166380063;AR:-0.985445353224;PITX1..3:-1.01104017488;LMO2:-1.17308280094;NANOG:-1.25047518634;ESRRA:-1.25838218551;RORA:-1.25942142155;POU2F1..3:-1.36980147552;FOXQ1:-1.4778551928;HOXA9_MEIS1:-1.53111080421;MYOD1:-1.563673453 | |top_motifs=NKX3-1:2.34299823391;MYBL2:1.86364023426;TAL1_TCF{3,4,12}:1.80111825962;ESR1:1.76004367515;HBP1_HMGB_SSRP1_UBTF:1.75325873706;ZNF238:1.64232016522;GZF1:1.63986956165;NKX3-2:1.53384668703;HMGA1,2:1.52251025542;TFAP4:1.49451428852;ATF6:1.46188238474;ALX4:1.43445920766;HIF1A:1.41425779837;TEF:1.41241750457;GCM1,2:1.38923391855;FOXD3:1.32886701786;FOXL1:1.30605101037;NKX2-2,8:1.30296630245;UFEwm:1.24848190468;TEAD1:1.23199292095;TP53:1.21727691058;KLF4:1.10536449511;HOX{A5,B5}:1.09783096288;XBP1:1.04179225379;NR3C1:1.02878785807;PDX1:1.02661275807;EVI1:1.01771099277;FOXO1,3,4:0.99620930929;SRF:0.98775245688;NFATC1..3:0.9557853362;ZNF384:0.925554683501;HAND1,2:0.920690153669;PRDM1:0.90066234009;IKZF1:0.894228489232;NKX2-3_NKX2-5:0.876039806234;TFAP2{A,C}:0.87018865952;GATA4:0.824296009056;GTF2A1,2:0.813976055961;GFI1B:0.808791525479;NFE2L1:0.800242368155;MAFB:0.799745558252;DBP:0.790285150197;AIRE:0.778474173699;NANOG{mouse}:0.77095217876;GLI1..3:0.759639751749;GTF2I:0.731059479201;NFIX:0.725152665473;HOX{A4,D4}:0.721126498369;HES1:0.705483612697;MAZ:0.694616613078;HMX1:0.692504510501;PAX8:0.691393162292;NKX2-1,4:0.678226976782;MZF1:0.66676600291;EBF1:0.656897350419;HSF1,2:0.646548535303;SOX17:0.636657080939;EN1,2:0.62572140291;TLX1..3_NFIC{dimer}:0.612170861793;PATZ1:0.595587131901;MTE{core}:0.593893858695;TBX4,5:0.590388671728;RXRA_VDR{dimer}:0.580302021101;PAX5:0.578626769986;HLF:0.565424017142;TFCP2:0.547041245903;FOXA2:0.541044749912;ZIC1..3:0.538223717942;SMAD1..7,9:0.524560880833;NR6A1:0.494635254928;NR1H4:0.485684974256;PAX1,9:0.480871096487;RXR{A,B,G}:0.467137449554;TFAP2B:0.460518504107;POU3F1..4:0.453666527881;SPZ1:0.413847396122;NFE2L2:0.35866176053;YY1:0.353386193256;PRRX1,2:0.319904887832;STAT1,3:0.318408606557;STAT5{A,B}:0.307443950649;SOX5:0.281075454791;EP300:0.271271806144;RREB1:0.254328610137;MYFfamily:0.246107229394;HOX{A6,A7,B6,B7}:0.238872306507;GFI1:0.238658532563;BPTF:0.221818930657;NKX6-1,2:0.220962345122;ADNP_IRX_SIX_ZHX:0.219440237911;LEF1_TCF7_TCF7L1,2:0.201821397106;LHX3,4:0.182133766968;IRF1,2:0.170383336314;ZNF148:0.169996138538;HIC1:0.161717293472;CEBPA,B_DDIT3:0.158995488705;DMAP1_NCOR{1,2}_SMARC:0.141485964889;EGR1..3:0.125304714067;NRF1:0.0950718706345;RFX1:0.0654921868831;XCPE1{core}:0.0635242294265;RUNX1..3:0.0625844268714;AHR_ARNT_ARNT2:0.056298662023;MEF2{A,B,C,D}:0.0551562917586;CDC5L:0.0542430016471;SP1:0.0369060133748;NHLH1,2:0.0181408339055;TOPORS:0.0126292319478;STAT2,4,6:0.0102453780875;ELK1,4_GABP{A,B1}:-0.00111775441453;POU5F1:-0.0168902843083;POU6F1:-0.0281592399724;NFE2:-0.0299609040839;TFDP1:-0.0313121253488;ZNF143:-0.0604464476557;ALX1:-0.0659194578077;BACH2:-0.0756309472781;TBP:-0.0816201936494;FOS_FOS{B,L1}_JUN{B,D}:-0.0868517343825;ZFP161:-0.0941702830474;FOX{D1,D2}:-0.0993824015924;SOX2:-0.101749244894;MED-1{core}:-0.117181527407;POU1F1:-0.122595489423;HNF1A:-0.150422745907;PAX4:-0.186763005818;REST:-0.214488307313;CREB1:-0.234484005497;ZBTB6:-0.239427799064;ZBTB16:-0.248268327295;ARID5B:-0.251466147048;MTF1:-0.263394403641;FOSL2:-0.270530887457;ZNF423:-0.285361306974;TLX2:-0.292312179644;VSX1,2:-0.335331923828;MYB:-0.335967421866;CRX:-0.361490500047;T:-0.370428819097;CUX2:-0.394941517953;RBPJ:-0.395251123075;PAX3,7:-0.401692783858;JUN:-0.407827705774;HNF4A_NR2F1,2:-0.421914111418;ATF4:-0.461622143319;FOX{I1,J2}:-0.46544869729;NFKB1_REL_RELA:-0.481807286576;CDX1,2,4:-0.481809244941;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.512103604794;ONECUT1,2:-0.52189234879;SPI1:-0.524607401948;NFIL3:-0.52668203631;TGIF1:-0.54735377561;bHLH_family:-0.551913259387;FOXM1:-0.552536283243;E2F1..5:-0.558902745568;PBX1:-0.560465465882;SREBF1,2:-0.616446680499;FOXN1:-0.617912769396;ATF2:-0.630651738063;FOX{F1,F2,J1}:-0.63380856111;ETS1,2:-0.637354898402;ELF1,2,4:-0.638305112148;PAX2:-0.653822528084;IKZF2:-0.660662008793;PPARG:-0.670904288975;IRF7:-0.671356268322;ATF5_CREB3:-0.672493524222;SPIB:-0.701095340276;SOX{8,9,10}:-0.737093432538;BREu{core}:-0.756368382537;RFX2..5_RFXANK_RFXAP:-0.773185869603;FOXP1:-0.808163134105;OCT4_SOX2{dimer}:-0.827772576357;PAX6:-0.83344085186;FOXP3:-0.835530298485;NR5A1,2:-0.840695304189;NFY{A,B,C}:-0.842867326426;SNAI1..3:-0.855034699637;ZEB1:-0.939558468131;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.940213049962;GATA6:-0.981166380063;AR:-0.985445353224;PITX1..3:-1.01104017488;LMO2:-1.17308280094;NANOG:-1.25047518634;ESRRA:-1.25838218551;RORA:-1.25942142155;POU2F1..3:-1.36980147552;FOXQ1:-1.4778551928;HOXA9_MEIS1:-1.53111080421;MYOD1:-1.563673453 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11556-120C8;search_select_hide=table117:FF:11556-120C8 | |||
}} | }} | ||
Latest revision as of 18:08, 4 June 2020
| Name: | Fibroblast - skin dystrophia myotonica, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11353 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11353
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11353
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.251 |
| 10 | 10 | 0.376 |
| 100 | 100 | 0.583 |
| 101 | 101 | 0.378 |
| 102 | 102 | 0.0231 |
| 103 | 103 | 0.747 |
| 104 | 104 | 0.782 |
| 105 | 105 | 0.159 |
| 106 | 106 | 0.275 |
| 107 | 107 | 0.93 |
| 108 | 108 | 0.671 |
| 109 | 109 | 0.203 |
| 11 | 11 | 0.245 |
| 110 | 110 | 0.766 |
| 111 | 111 | 0.406 |
| 112 | 112 | 0.733 |
| 113 | 113 | 0.0382 |
| 114 | 114 | 0.624 |
| 115 | 115 | 0.267 |
| 116 | 116 | 0.52 |
| 117 | 117 | 0.033 |
| 118 | 118 | 0.323 |
| 119 | 119 | 0.15 |
| 12 | 12 | 0.454 |
| 120 | 120 | 0.844 |
| 121 | 121 | 0.503 |
| 122 | 122 | 0.219 |
| 123 | 123 | 0.00141 |
| 124 | 124 | 0.558 |
| 125 | 125 | 0.407 |
| 126 | 126 | 0.64 |
| 127 | 127 | 0.768 |
| 128 | 128 | 0.633 |
| 129 | 129 | 0.33 |
| 13 | 13 | 0.225 |
| 130 | 130 | 0.543 |
| 131 | 131 | 0.929 |
| 132 | 132 | 0.584 |
| 133 | 133 | 0.934 |
| 134 | 134 | 0.419 |
| 135 | 135 | 0.288 |
| 136 | 136 | 0.264 |
| 137 | 137 | 0.296 |
| 138 | 138 | 0.748 |
| 139 | 139 | 0.721 |
| 14 | 14 | 0.216 |
| 140 | 140 | 0.908 |
| 141 | 141 | 0.212 |
| 142 | 142 | 0.746 |
| 143 | 143 | 0.756 |
| 144 | 144 | 0.392 |
| 145 | 145 | 0.9 |
| 146 | 146 | 0.618 |
| 147 | 147 | 0.0811 |
| 148 | 148 | 0.154 |
| 149 | 149 | 0.0373 |
| 15 | 15 | 0.26 |
| 150 | 150 | 0.354 |
| 151 | 151 | 0.579 |
| 152 | 152 | 0.41 |
| 153 | 153 | 0.345 |
| 154 | 154 | 0.434 |
| 155 | 155 | 0.0409 |
| 156 | 156 | 0.692 |
| 157 | 157 | 0.203 |
| 158 | 158 | 0.00889 |
| 159 | 159 | 0.793 |
| 16 | 16 | 0.149 |
| 160 | 160 | 0.686 |
| 161 | 161 | 0.369 |
| 162 | 162 | 0.372 |
| 163 | 163 | 0.635 |
| 164 | 164 | 0.809 |
| 165 | 165 | 0.504 |
| 166 | 166 | 0.0896 |
| 167 | 167 | 0.175 |
| 168 | 168 | 0.602 |
| 169 | 169 | 0.201 |
| 17 | 17 | 0.727 |
| 18 | 18 | 0.126 |
| 19 | 19 | 0.0301 |
| 2 | 2 | 0.999 |
| 20 | 20 | 0.52 |
| 21 | 21 | 0.0305 |
| 22 | 22 | 0.673 |
| 23 | 23 | 0.543 |
| 24 | 24 | 0.417 |
| 25 | 25 | 0.214 |
| 26 | 26 | 0.896 |
| 27 | 27 | 0.896 |
| 28 | 28 | 0.472 |
| 29 | 29 | 0.73 |
| 3 | 3 | 0.752 |
| 30 | 30 | 0.25 |
| 31 | 31 | 0.652 |
| 32 | 32 | 7.02516e-15 |
| 33 | 33 | 0.562 |
| 34 | 34 | 0.788 |
| 35 | 35 | 0.875 |
| 36 | 36 | 0.0767 |
| 37 | 37 | 0.612 |
| 38 | 38 | 0.295 |
| 39 | 39 | 0.489 |
| 4 | 4 | 0.736 |
| 40 | 40 | 0.053 |
| 41 | 41 | 0.743 |
| 42 | 42 | 0.476 |
| 43 | 43 | 0.821 |
| 44 | 44 | 0.57 |
| 45 | 45 | 0.733 |
| 46 | 46 | 0.928 |
| 47 | 47 | 0.294 |
| 48 | 48 | 0.479 |
| 49 | 49 | 0.297 |
| 5 | 5 | 0.57 |
| 50 | 50 | 0.849 |
| 51 | 51 | 0.592 |
| 52 | 52 | 0.976 |
| 53 | 53 | 0.0978 |
| 54 | 54 | 0.835 |
| 55 | 55 | 0.214 |
| 56 | 56 | 0.628 |
| 57 | 57 | 0.944 |
| 58 | 58 | 0.117 |
| 59 | 59 | 0.375 |
| 6 | 6 | 0.679 |
| 60 | 60 | 0.298 |
| 61 | 61 | 0.21 |
| 62 | 62 | 0.394 |
| 63 | 63 | 0.901 |
| 64 | 64 | 0.32 |
| 65 | 65 | 0.607 |
| 66 | 66 | 0.215 |
| 67 | 67 | 0.973 |
| 68 | 68 | 0.425 |
| 69 | 69 | 0.783 |
| 7 | 7 | 0.0712 |
| 70 | 70 | 0.508 |
| 71 | 71 | 0.639 |
| 72 | 72 | 0.604 |
| 73 | 73 | 0.585 |
| 74 | 74 | 0.111 |
| 75 | 75 | 0.192 |
| 76 | 76 | 0.71 |
| 77 | 77 | 0.255 |
| 78 | 78 | 0.0995 |
| 79 | 79 | 0.0171 |
| 8 | 8 | 0.812 |
| 80 | 80 | 0.733 |
| 81 | 81 | 0.796 |
| 82 | 82 | 0.358 |
| 83 | 83 | 0.318 |
| 84 | 84 | 0.115 |
| 85 | 85 | 0.699 |
| 86 | 86 | 0.729 |
| 87 | 87 | 0.621 |
| 88 | 88 | 0.36 |
| 89 | 89 | 0.455 |
| 9 | 9 | 0.879 |
| 90 | 90 | 0.743 |
| 91 | 91 | 0.708 |
| 92 | 92 | 0.5 |
| 93 | 93 | 0.976 |
| 94 | 94 | 0.873 |
| 95 | 95 | 0.193 |
| 96 | 96 | 0.627 |
| 97 | 97 | 0.62 |
| 98 | 98 | 0.332 |
| 99 | 99 | 0.0167 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11353
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000253 human fibroblast- skin dystrophia myotonica sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
