FF:11559-120D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005567 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008291;DRR009163;DRZ000588;DRZ001973;DRZ011938;DRZ013323 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000251 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11559-120D2 | |id=FF:11559-120D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000251 | ||
|is_obsolete= | |||
|library_id=CNhs11912 | |||
|library_id_phase_based=2:CNhs11912 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11559 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11559 | |||
|name=Fibroblast - skin spinal muscular atrophy, donor3 | |name=Fibroblast - skin spinal muscular atrophy, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11912,LSID842,release014,COMPLETED | |profile_hcage=CNhs11912,LSID842,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0208447609871159,0,0,0,0,-0.0456215647384561,0,-0.235672610219282,-0.261558799589826,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.111633488374196,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.215356914214527,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.0416895219742318,0,0,0.0797252919890154,-0.0969923612426051,0,0,-0.0176183352240816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607074069816236,0,0,0,0,0,-0.073388437575689,0,0,0,-0.100395304329266,-0.0598673561216955,0,0.323926863502011,0,0.11469646534793,-0.0563458292634746,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128252780762345,0,0,0,-0.186901498444532,-0.598509458860053,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=126.80145 | |rna_weight_ug=126.80145 | ||
|sample_age=7 month old child | |sample_age=7 month old child | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.67971393604699e-241!GO:0043226;organelle;3.20530002129481e-195!GO:0043229;intracellular organelle;8.15216231140022e-195!GO:0043231;intracellular membrane-bound organelle;1.73445493039956e-186!GO:0043227;membrane-bound organelle;2.8646172110614e-186!GO:0005737;cytoplasm;4.53534028373818e-181!GO:0044422;organelle part;3.40385514432668e-145!GO:0044446;intracellular organelle part;1.33707331548093e-143!GO:0044444;cytoplasmic part;3.24482319305829e-128!GO:0032991;macromolecular complex;3.23518376076519e-100!GO:0005515;protein binding;2.47196612106723e-84!GO:0030529;ribonucleoprotein complex;2.76530816361933e-83!GO:0043170;macromolecule metabolic process;7.1684881079202e-81!GO:0044238;primary metabolic process;8.04883147575763e-81!GO:0044237;cellular metabolic process;1.83661903166743e-79!GO:0005634;nucleus;1.22719853332304e-77!GO:0044428;nuclear part;1.17250174050212e-70!GO:0043233;organelle lumen;1.71587566540164e-68!GO:0031974;membrane-enclosed lumen;1.71587566540164e-68!GO:0003723;RNA binding;1.44820950080836e-67!GO:0016043;cellular component organization and biogenesis;1.51007125852854e-56!GO:0005739;mitochondrion;5.8010557796138e-53!GO:0043234;protein complex;1.78822172720535e-51!GO:0005840;ribosome;9.05968053772034e-49!GO:0019538;protein metabolic process;1.43653530161113e-47!GO:0031090;organelle membrane;6.78739578764209e-47!GO:0015031;protein transport;2.61006299192581e-46!GO:0033036;macromolecule localization;3.03303149777962e-46!GO:0006396;RNA processing;1.30246389663783e-45!GO:0043283;biopolymer metabolic process;2.79999724047289e-45!GO:0006412;translation;4.12021067985387e-44!GO:0003735;structural constituent of ribosome;3.15941122995021e-43!GO:0008104;protein localization;9.54640498485282e-43!GO:0031981;nuclear lumen;1.496913574944e-42!GO:0045184;establishment of protein localization;3.40384791983666e-42!GO:0044260;cellular macromolecule metabolic process;2.13247747294564e-41!GO:0044267;cellular protein metabolic process;9.52162519886855e-41!GO:0043228;non-membrane-bound organelle;9.24206544975068e-40!GO:0043232;intracellular non-membrane-bound organelle;9.24206544975068e-40!GO:0010467;gene expression;1.65744861952594e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.33668956893643e-38!GO:0046907;intracellular transport;7.1177873612163e-38!GO:0016071;mRNA metabolic process;1.36966386498981e-37!GO:0033279;ribosomal subunit;1.64871910474768e-37!GO:0044429;mitochondrial part;2.24024232262038e-37!GO:0005829;cytosol;1.24457522429341e-36!GO:0006996;organelle organization and biogenesis;2.32010521864907e-36!GO:0008380;RNA splicing;7.11529424897034e-36!GO:0031967;organelle envelope;1.06397415805258e-35!GO:0031975;envelope;1.92973353206825e-35!GO:0009059;macromolecule biosynthetic process;9.58850355292469e-35!GO:0006397;mRNA processing;1.65807560904241e-33!GO:0009058;biosynthetic process;3.6930500962615e-33!GO:0065003;macromolecular complex assembly;2.01462221368932e-32!GO:0044249;cellular biosynthetic process;5.78142343936358e-31!GO:0006886;intracellular protein transport;8.40498231264683e-31!GO:0022607;cellular component assembly;3.00428921044239e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.49248367881741e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.1162008514101e-27!GO:0005654;nucleoplasm;8.00878398546063e-27!GO:0006259;DNA metabolic process;1.17512464982071e-26!GO:0007049;cell cycle;2.11973357150304e-25!GO:0005681;spliceosome;4.61280348295511e-25!GO:0051649;establishment of cellular localization;5.88241723663857e-25!GO:0051641;cellular localization;1.42102828718101e-24!GO:0005740;mitochondrial envelope;2.14219885242806e-24!GO:0003676;nucleic acid binding;2.08183908258104e-23!GO:0031966;mitochondrial membrane;7.37756532570322e-23!GO:0019866;organelle inner membrane;1.52215501265726e-22!GO:0006457;protein folding;4.08039938038138e-22!GO:0000166;nucleotide binding;4.69891803448961e-22!GO:0006119;oxidative phosphorylation;6.5945920783772e-22!GO:0044445;cytosolic part;7.3640954404697e-22!GO:0044451;nucleoplasm part;7.3640954404697e-22!GO:0005743;mitochondrial inner membrane;4.95863004761081e-21!GO:0016462;pyrophosphatase activity;7.0073719928132e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.23833588760205e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.17614709905837e-20!GO:0012505;endomembrane system;1.44924028567024e-20!GO:0017111;nucleoside-triphosphatase activity;2.40811127986009e-20!GO:0000278;mitotic cell cycle;1.18665270667446e-19!GO:0022402;cell cycle process;2.1838002141606e-19!GO:0015935;small ribosomal subunit;2.60107595573435e-19!GO:0005783;endoplasmic reticulum;2.77488501621367e-19!GO:0015934;large ribosomal subunit;3.78779676307576e-19!GO:0044455;mitochondrial membrane part;7.33009870581146e-19!GO:0048770;pigment granule;3.35715839557013e-18!GO:0042470;melanosome;3.35715839557013e-18!GO:0005794;Golgi apparatus;9.50748549713938e-18!GO:0022618;protein-RNA complex assembly;9.66578819326973e-18!GO:0016070;RNA metabolic process;1.47000813975696e-17!GO:0006512;ubiquitin cycle;7.00190797117608e-17!GO:0006974;response to DNA damage stimulus;2.88693974988215e-16!GO:0048193;Golgi vesicle transport;3.00745563499719e-16!GO:0005746;mitochondrial respiratory chain;3.97812157402522e-16!GO:0016874;ligase activity;5.57021652767671e-16!GO:0032553;ribonucleotide binding;7.4844674390043e-16!GO:0032555;purine ribonucleotide binding;7.4844674390043e-16!GO:0000502;proteasome complex (sensu Eukaryota);8.76189294862044e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.99536818294809e-16!GO:0000087;M phase of mitotic cell cycle;9.2299422351241e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.12736534649207e-15!GO:0051082;unfolded protein binding;1.2328178417268e-15!GO:0007067;mitosis;1.54223368546602e-15!GO:0008135;translation factor activity, nucleic acid binding;1.67077445957534e-15!GO:0043285;biopolymer catabolic process;1.93676537104104e-15!GO:0019941;modification-dependent protein catabolic process;2.22015394919106e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.22015394919106e-15!GO:0022403;cell cycle phase;2.31379372753722e-15!GO:0005730;nucleolus;2.39921397710655e-15!GO:0005694;chromosome;2.51539967137721e-15!GO:0044432;endoplasmic reticulum part;2.51943599492992e-15!GO:0031980;mitochondrial lumen;2.69245855213092e-15!GO:0005759;mitochondrial matrix;2.69245855213092e-15!GO:0008134;transcription factor binding;2.69469541267575e-15!GO:0017076;purine nucleotide binding;2.74810943407627e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.40686669991118e-15!GO:0044257;cellular protein catabolic process;3.49561472011683e-15!GO:0051301;cell division;4.58929328653585e-15!GO:0016192;vesicle-mediated transport;6.65315179211061e-15!GO:0044265;cellular macromolecule catabolic process;1.0190618819469e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.16470593427355e-14!GO:0003954;NADH dehydrogenase activity;2.16470593427355e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.16470593427355e-14!GO:0030163;protein catabolic process;2.60754691968366e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.73942579604348e-14!GO:0051186;cofactor metabolic process;3.54822463639885e-14!GO:0006605;protein targeting;4.27592649012603e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.36037211970839e-14!GO:0009057;macromolecule catabolic process;1.00427328991091e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.13178519169819e-13!GO:0000375;RNA splicing, via transesterification reactions;1.13178519169819e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.13178519169819e-13!GO:0005761;mitochondrial ribosome;1.17852689882854e-13!GO:0000313;organellar ribosome;1.17852689882854e-13!GO:0044427;chromosomal part;1.38894042114606e-13!GO:0006281;DNA repair;2.69427779616762e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.5616701415251e-13!GO:0042773;ATP synthesis coupled electron transport;8.5616701415251e-13!GO:0005524;ATP binding;1.14577830023897e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.2197610130875e-12!GO:0045271;respiratory chain complex I;1.2197610130875e-12!GO:0005747;mitochondrial respiratory chain complex I;1.2197610130875e-12!GO:0000279;M phase;1.51110616821462e-12!GO:0032559;adenyl ribonucleotide binding;3.02550775413594e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.10826008750408e-12!GO:0005793;ER-Golgi intermediate compartment;3.88433084880157e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.36013858562439e-12!GO:0003743;translation initiation factor activity;4.67830597011218e-12!GO:0005635;nuclear envelope;5.08435615703666e-12!GO:0051276;chromosome organization and biogenesis;7.62230459725763e-12!GO:0009719;response to endogenous stimulus;8.90135303035848e-12!GO:0043412;biopolymer modification;1.50653803577324e-11!GO:0030554;adenyl nucleotide binding;1.52279802446674e-11!GO:0044248;cellular catabolic process;2.24859567235638e-11!GO:0031965;nuclear membrane;2.5811098165743e-11!GO:0042254;ribosome biogenesis and assembly;2.89021489383655e-11!GO:0006413;translational initiation;2.95589132000068e-11!GO:0006732;coenzyme metabolic process;4.49270278675311e-11!GO:0016604;nuclear body;6.10778734558261e-11!GO:0009055;electron carrier activity;1.10274595855539e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.47971605999011e-10!GO:0015630;microtubule cytoskeleton;1.64581522225651e-10!GO:0044453;nuclear membrane part;1.79280835883244e-10!GO:0009259;ribonucleotide metabolic process;1.9607488290592e-10!GO:0006464;protein modification process;2.008566181741e-10!GO:0003712;transcription cofactor activity;2.1217053432102e-10!GO:0005789;endoplasmic reticulum membrane;5.13061539300928e-10!GO:0042623;ATPase activity, coupled;5.31298593329133e-10!GO:0006260;DNA replication;6.07895796241183e-10!GO:0016887;ATPase activity;7.86751358392662e-10!GO:0006163;purine nucleotide metabolic process;7.86751358392662e-10!GO:0008565;protein transporter activity;8.05039845391233e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;9.74055632923287e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.05494991364518e-09!GO:0000074;regulation of progression through cell cycle;1.07337948672108e-09!GO:0009150;purine ribonucleotide metabolic process;1.10663426023354e-09!GO:0006461;protein complex assembly;1.22110093460752e-09!GO:0019787;small conjugating protein ligase activity;1.27277694545857e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.28717186968646e-09!GO:0051726;regulation of cell cycle;1.30578577816675e-09!GO:0006446;regulation of translational initiation;1.530419154739e-09!GO:0006913;nucleocytoplasmic transport;1.56389933254496e-09!GO:0008639;small protein conjugating enzyme activity;1.89044519327536e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.11547787299439e-09!GO:0009141;nucleoside triphosphate metabolic process;2.33516431830987e-09!GO:0009260;ribonucleotide biosynthetic process;2.45002070995954e-09!GO:0006323;DNA packaging;2.84908570167959e-09!GO:0051169;nuclear transport;3.28923232322091e-09!GO:0006164;purine nucleotide biosynthetic process;3.5412207328807e-09!GO:0004842;ubiquitin-protein ligase activity;3.5948046936912e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.89078270812819e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.89078270812819e-09!GO:0043687;post-translational protein modification;3.91660861823034e-09!GO:0012501;programmed cell death;4.51925497659773e-09!GO:0016607;nuclear speck;4.68787985325927e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.70286230311666e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.75180042532894e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.99675235325186e-09!GO:0003924;GTPase activity;5.86559518285808e-09!GO:0050794;regulation of cellular process;6.03422059120768e-09!GO:0004386;helicase activity;6.41738110705932e-09!GO:0048523;negative regulation of cellular process;7.20314991489473e-09!GO:0006915;apoptosis;8.42692496569239e-09!GO:0008026;ATP-dependent helicase activity;1.13513825025544e-08!GO:0005643;nuclear pore;1.2331957921722e-08!GO:0065002;intracellular protein transport across a membrane;1.30639879526064e-08!GO:0065004;protein-DNA complex assembly;1.437270107906e-08!GO:0016881;acid-amino acid ligase activity;1.72791069863e-08!GO:0015986;ATP synthesis coupled proton transport;1.77600556566612e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.77600556566612e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.77600556566612e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.77600556566612e-08!GO:0030120;vesicle coat;2.46829392790235e-08!GO:0030662;coated vesicle membrane;2.46829392790235e-08!GO:0009060;aerobic respiration;3.11650959791828e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.35254710499631e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.35254710499631e-08!GO:0006366;transcription from RNA polymerase II promoter;3.5640010031257e-08!GO:0008219;cell death;3.5640010031257e-08!GO:0016265;death;3.5640010031257e-08!GO:0006399;tRNA metabolic process;3.60032820314417e-08!GO:0007010;cytoskeleton organization and biogenesis;3.79837142351067e-08!GO:0046034;ATP metabolic process;3.87752737450308e-08!GO:0045333;cellular respiration;4.05469904053256e-08!GO:0044431;Golgi apparatus part;4.07801845301276e-08!GO:0005788;endoplasmic reticulum lumen;4.60655330807655e-08!GO:0005819;spindle;9.41807844127856e-08!GO:0005768;endosome;9.57300305795528e-08!GO:0050657;nucleic acid transport;1.03218469142882e-07!GO:0051236;establishment of RNA localization;1.03218469142882e-07!GO:0050658;RNA transport;1.03218469142882e-07!GO:0048475;coated membrane;1.03480882626569e-07!GO:0030117;membrane coat;1.03480882626569e-07!GO:0006403;RNA localization;1.11533945758944e-07!GO:0006333;chromatin assembly or disassembly;1.11792343260074e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.37346868177395e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.37346868177395e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.37346868177395e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.44847144290285e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.81424284914014e-07!GO:0043038;amino acid activation;1.93186610362394e-07!GO:0006418;tRNA aminoacylation for protein translation;1.93186610362394e-07!GO:0043039;tRNA aminoacylation;1.93186610362394e-07!GO:0048519;negative regulation of biological process;1.96369656203975e-07!GO:0046930;pore complex;2.2851044540195e-07!GO:0000785;chromatin;2.30926573869889e-07!GO:0006099;tricarboxylic acid cycle;2.4781592067191e-07!GO:0046356;acetyl-CoA catabolic process;2.4781592067191e-07!GO:0051246;regulation of protein metabolic process;2.48679008936087e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.55773600789536e-07!GO:0019829;cation-transporting ATPase activity;2.55963034348342e-07!GO:0051187;cofactor catabolic process;2.66290731389712e-07!GO:0006754;ATP biosynthetic process;2.92645009365701e-07!GO:0006753;nucleoside phosphate metabolic process;2.92645009365701e-07!GO:0017038;protein import;3.28134089842022e-07!GO:0006364;rRNA processing;3.64799212689149e-07!GO:0003697;single-stranded DNA binding;5.63316239524837e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.88047564360668e-07!GO:0009109;coenzyme catabolic process;6.36109131238733e-07!GO:0005667;transcription factor complex;6.57492924443407e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.58809839965787e-07!GO:0016072;rRNA metabolic process;7.67174272846256e-07!GO:0006084;acetyl-CoA metabolic process;1.0418224800012e-06!GO:0009056;catabolic process;1.069148476234e-06!GO:0005813;centrosome;1.17170464844652e-06!GO:0043566;structure-specific DNA binding;1.22373253836435e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.22885446979808e-06!GO:0051188;cofactor biosynthetic process;1.53528115112931e-06!GO:0000245;spliceosome assembly;1.60980446686914e-06!GO:0000775;chromosome, pericentric region;1.63971587016842e-06!GO:0032446;protein modification by small protein conjugation;2.16793285929282e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.30927385521504e-06!GO:0000139;Golgi membrane;2.30927385521504e-06!GO:0005815;microtubule organizing center;2.34413589415806e-06!GO:0051789;response to protein stimulus;2.65474544311837e-06!GO:0006986;response to unfolded protein;2.65474544311837e-06!GO:0009117;nucleotide metabolic process;2.70344304147272e-06!GO:0005525;GTP binding;2.79894324633018e-06!GO:0051028;mRNA transport;2.87063454813624e-06!GO:0005798;Golgi-associated vesicle;3.0256290210975e-06!GO:0006613;cotranslational protein targeting to membrane;3.04680954496524e-06!GO:0000151;ubiquitin ligase complex;3.19283942362583e-06!GO:0050789;regulation of biological process;3.2447969838113e-06!GO:0045259;proton-transporting ATP synthase complex;3.40451065368611e-06!GO:0007051;spindle organization and biogenesis;3.45805894641137e-06!GO:0031324;negative regulation of cellular metabolic process;3.65754121071252e-06!GO:0031988;membrane-bound vesicle;3.70060390348062e-06!GO:0016567;protein ubiquitination;3.75420603267198e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.09697117352752e-06!GO:0006334;nucleosome assembly;4.18307357473385e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.67121609123748e-06!GO:0008092;cytoskeletal protein binding;4.80498333662688e-06!GO:0006752;group transfer coenzyme metabolic process;5.83909905033906e-06!GO:0006916;anti-apoptosis;6.44387320463517e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.61734167787996e-06!GO:0044440;endosomal part;6.79537701278112e-06!GO:0010008;endosome membrane;6.79537701278112e-06!GO:0043067;regulation of programmed cell death;7.34399693305316e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.04732410053622e-06!GO:0031252;leading edge;9.26017712406128e-06!GO:0007005;mitochondrion organization and biogenesis;9.31459000448853e-06!GO:0016568;chromatin modification;9.49243375831224e-06!GO:0042981;regulation of apoptosis;9.88342865225824e-06!GO:0009892;negative regulation of metabolic process;1.0454847477176e-05!GO:0031497;chromatin assembly;1.13400785780475e-05!GO:0003724;RNA helicase activity;1.15896231355413e-05!GO:0003714;transcription corepressor activity;1.26945297032585e-05!GO:0030029;actin filament-based process;1.27875142108666e-05!GO:0051325;interphase;1.31796780646372e-05!GO:0016853;isomerase activity;1.34600154619036e-05!GO:0051329;interphase of mitotic cell cycle;1.34628383845597e-05!GO:0016859;cis-trans isomerase activity;1.44501316247971e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.47465267346518e-05!GO:0043069;negative regulation of programmed cell death;1.48124712201824e-05!GO:0008361;regulation of cell size;1.49506799456274e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.68363152050375e-05!GO:0032561;guanyl ribonucleotide binding;1.72427522590491e-05!GO:0019001;guanyl nucleotide binding;1.72427522590491e-05!GO:0016049;cell growth;1.72507244516644e-05!GO:0009108;coenzyme biosynthetic process;2.12158175258e-05!GO:0030867;rough endoplasmic reticulum membrane;2.18288597407672e-05!GO:0004298;threonine endopeptidase activity;2.83053212771003e-05!GO:0006793;phosphorus metabolic process;2.85381760939401e-05!GO:0006796;phosphate metabolic process;2.85381760939401e-05!GO:0005769;early endosome;2.85381760939401e-05!GO:0019222;regulation of metabolic process;2.9682205323903e-05!GO:0043066;negative regulation of apoptosis;3.12709909362845e-05!GO:0043623;cellular protein complex assembly;3.22667509492795e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.47508485080792e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.55037528030679e-05!GO:0031982;vesicle;3.87206511334738e-05!GO:0051170;nuclear import;4.14573969200533e-05!GO:0016564;transcription repressor activity;4.4821765887763e-05!GO:0030133;transport vesicle;4.63290303839168e-05!GO:0016779;nucleotidyltransferase activity;4.67337949650325e-05!GO:0031410;cytoplasmic vesicle;4.97722754901591e-05!GO:0003713;transcription coactivator activity;5.04995281535409e-05!GO:0016310;phosphorylation;5.3796435326332e-05!GO:0005770;late endosome;5.45733424060988e-05!GO:0045454;cell redox homeostasis;5.77653792379549e-05!GO:0019843;rRNA binding;5.9839612540247e-05!GO:0005762;mitochondrial large ribosomal subunit;6.04685819929473e-05!GO:0000315;organellar large ribosomal subunit;6.04685819929473e-05!GO:0006606;protein import into nucleus;6.58809878516317e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.74768849999642e-05!GO:0000075;cell cycle checkpoint;8.11210707298444e-05!GO:0043021;ribonucleoprotein binding;8.91402241384286e-05!GO:0006612;protein targeting to membrane;9.11725952020306e-05!GO:0016363;nuclear matrix;9.21302203745604e-05!GO:0008654;phospholipid biosynthetic process;0.000103628012140944!GO:0005874;microtubule;0.000105600338030144!GO:0016491;oxidoreductase activity;0.00011019128294866!GO:0033116;ER-Golgi intermediate compartment membrane;0.000119676011345103!GO:0045786;negative regulation of progression through cell cycle;0.000121353086531339!GO:0016740;transferase activity;0.000131417015742098!GO:0051427;hormone receptor binding;0.000134083897894077!GO:0001558;regulation of cell growth;0.000142626304960194!GO:0000776;kinetochore;0.000143819232350873!GO:0005905;coated pit;0.000147633277095262!GO:0016787;hydrolase activity;0.000161988098859709!GO:0030663;COPI coated vesicle membrane;0.000175606082483304!GO:0030126;COPI vesicle coat;0.000175606082483304!GO:0019899;enzyme binding;0.000175970921109778!GO:0016563;transcription activator activity;0.000179158249050215!GO:0005773;vacuole;0.000199300761419182!GO:0000314;organellar small ribosomal subunit;0.000213612159725705!GO:0005763;mitochondrial small ribosomal subunit;0.000213612159725705!GO:0005048;signal sequence binding;0.000231131783930155!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000232808905997361!GO:0005885;Arp2/3 protein complex;0.000260895361581126!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000266469639947026!GO:0035257;nuclear hormone receptor binding;0.000275984088658432!GO:0016481;negative regulation of transcription;0.000278496112122596!GO:0003899;DNA-directed RNA polymerase activity;0.000280818310763948!GO:0051168;nuclear export;0.000288728505364387!GO:0008250;oligosaccharyl transferase complex;0.00031799468056333!GO:0006261;DNA-dependent DNA replication;0.000373518992109577!GO:0031968;organelle outer membrane;0.000395855321622336!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000424007314025082!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000442428781278222!GO:0019867;outer membrane;0.000459219610473967!GO:0005791;rough endoplasmic reticulum;0.000459885152036374!GO:0004576;oligosaccharyl transferase activity;0.000477043715338126!GO:0015631;tubulin binding;0.000481037384602988!GO:0006891;intra-Golgi vesicle-mediated transport;0.000517229910977629!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000535845650915909!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000557822245415089!GO:0006414;translational elongation;0.000559080345678285!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000573798876736448!GO:0005657;replication fork;0.000574785728066427!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000640702877238612!GO:0030137;COPI-coated vesicle;0.000680067479050225!GO:0006383;transcription from RNA polymerase III promoter;0.00070143544933004!GO:0006091;generation of precursor metabolites and energy;0.000713259536870146!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000720483970285989!GO:0043284;biopolymer biosynthetic process;0.000720483970285989!GO:0048471;perinuclear region of cytoplasm;0.000725197211834434!GO:0008186;RNA-dependent ATPase activity;0.000787351841709836!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000800134430107904!GO:0018196;peptidyl-asparagine modification;0.000803787050758438!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000803787050758438!GO:0051920;peroxiredoxin activity;0.000844819435903992!GO:0006302;double-strand break repair;0.000950503910731904!GO:0003729;mRNA binding;0.000962370681768781!GO:0048500;signal recognition particle;0.00102847250712602!GO:0008094;DNA-dependent ATPase activity;0.00106399723690156!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00106434374073074!GO:0046474;glycerophospholipid biosynthetic process;0.00107599420710846!GO:0005741;mitochondrial outer membrane;0.00114867756560982!GO:0031072;heat shock protein binding;0.00115975161845891!GO:0007088;regulation of mitosis;0.00117749068976422!GO:0007052;mitotic spindle organization and biogenesis;0.00119846252163647!GO:0009165;nucleotide biosynthetic process;0.00123284442716233!GO:0003779;actin binding;0.00128748045327935!GO:0030521;androgen receptor signaling pathway;0.00132395299886846!GO:0006626;protein targeting to mitochondrion;0.00136844428529623!GO:0000323;lytic vacuole;0.00139841550539706!GO:0005764;lysosome;0.00139841550539706!GO:0007093;mitotic cell cycle checkpoint;0.0014312986874836!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00145339333364159!GO:0051252;regulation of RNA metabolic process;0.00145339333364159!GO:0007243;protein kinase cascade;0.00147550108918064!GO:0046489;phosphoinositide biosynthetic process;0.00150469933904572!GO:0030658;transport vesicle membrane;0.0015660720830788!GO:0000082;G1/S transition of mitotic cell cycle;0.001602508486481!GO:0043681;protein import into mitochondrion;0.00166177741684626!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00167760571075583!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00167760571075583!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00167760571075583!GO:0008047;enzyme activator activity;0.00167919326476741!GO:0051128;regulation of cellular component organization and biogenesis;0.00168202456907567!GO:0045045;secretory pathway;0.00171272802011447!GO:0030880;RNA polymerase complex;0.00175141841775663!GO:0003684;damaged DNA binding;0.0017517346786791!GO:0003682;chromatin binding;0.00177580953955898!GO:0051052;regulation of DNA metabolic process;0.00189833063668345!GO:0004004;ATP-dependent RNA helicase activity;0.00209804283431957!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00227405044797787!GO:0007017;microtubule-based process;0.0023386729175061!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0023472673952438!GO:0045047;protein targeting to ER;0.0023472673952438!GO:0003690;double-stranded DNA binding;0.00252302089997834!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00260432399268206!GO:0031124;mRNA 3'-end processing;0.00274614176130041!GO:0008312;7S RNA binding;0.00277846520555392!GO:0000910;cytokinesis;0.00282658036344109!GO:0065007;biological regulation;0.0028572911828674!GO:0000059;protein import into nucleus, docking;0.00289120637518239!GO:0042802;identical protein binding;0.00289817436452871!GO:0008154;actin polymerization and/or depolymerization;0.00291458732841096!GO:0048522;positive regulation of cellular process;0.00303530882239721!GO:0030134;ER to Golgi transport vesicle;0.00307349896916567!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00315490398817292!GO:0008180;signalosome;0.0032269871485821!GO:0048487;beta-tubulin binding;0.00348360187455635!GO:0003711;transcription elongation regulator activity;0.00348360187455635!GO:0007059;chromosome segregation;0.0034853291535113!GO:0035258;steroid hormone receptor binding;0.00364088278238638!GO:0016197;endosome transport;0.00366483358834174!GO:0003746;translation elongation factor activity;0.00375474045660826!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00375474045660826!GO:0000428;DNA-directed RNA polymerase complex;0.00375474045660826!GO:0000786;nucleosome;0.0038463657785022!GO:0008022;protein C-terminus binding;0.00385447888789653!GO:0030660;Golgi-associated vesicle membrane;0.00389258556399895!GO:0005684;U2-dependent spliceosome;0.00390629221842826!GO:0007050;cell cycle arrest;0.00394769459773528!GO:0030127;COPII vesicle coat;0.00417453826624827!GO:0012507;ER to Golgi transport vesicle membrane;0.00417453826624827!GO:0044262;cellular carbohydrate metabolic process;0.00429763416274282!GO:0031901;early endosome membrane;0.00445793537525455!GO:0017166;vinculin binding;0.00451543474056026!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00451543474056026!GO:0033043;regulation of organelle organization and biogenesis;0.00451543474056026!GO:0007264;small GTPase mediated signal transduction;0.00468172149040199!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00469280409418377!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00494475370210691!GO:0065009;regulation of a molecular function;0.00496350862813604!GO:0001726;ruffle;0.00497706023496759!GO:0005856;cytoskeleton;0.00504227948298428!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00504597065178236!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00504597065178236!GO:0006310;DNA recombination;0.00505771946064607!GO:0006354;RNA elongation;0.00530156504525591!GO:0031323;regulation of cellular metabolic process;0.00542604833953398!GO:0005869;dynactin complex;0.00543003161267901!GO:0006352;transcription initiation;0.00551640053825979!GO:0050681;androgen receptor binding;0.00555959371757184!GO:0030118;clathrin coat;0.00571315006092366!GO:0005876;spindle microtubule;0.00606747379317954!GO:0051087;chaperone binding;0.0061654869203796!GO:0031123;RNA 3'-end processing;0.00620145570318881!GO:0030132;clathrin coat of coated pit;0.006252716117863!GO:0044452;nucleolar part;0.00634246754267134!GO:0004674;protein serine/threonine kinase activity;0.00674871038833922!GO:0015992;proton transport;0.00704466064574126!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0071016123536415!GO:0040008;regulation of growth;0.00734295702794093!GO:0006402;mRNA catabolic process;0.00755216984306447!GO:0006818;hydrogen transport;0.00782408783377177!GO:0003678;DNA helicase activity;0.00799593724735386!GO:0006839;mitochondrial transport;0.00813836912509488!GO:0030176;integral to endoplasmic reticulum membrane;0.00836021169348799!GO:0016272;prefoldin complex;0.00850526139010211!GO:0006595;polyamine metabolic process;0.00853076110827335!GO:0007006;mitochondrial membrane organization and biogenesis;0.00859817866627036!GO:0005862;muscle thin filament tropomyosin;0.00887996874422117!GO:0000339;RNA cap binding;0.00887996874422117!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00895003344535851!GO:0015399;primary active transmembrane transporter activity;0.00895003344535851!GO:0008139;nuclear localization sequence binding;0.00921666574477293!GO:0006892;post-Golgi vesicle-mediated transport;0.00951821191617024!GO:0030027;lamellipodium;0.00953288314931738!GO:0016044;membrane organization and biogenesis;0.00989565126401525!GO:0046483;heterocycle metabolic process;0.0100124021781666!GO:0006650;glycerophospholipid metabolic process;0.0100124021781666!GO:0032984;macromolecular complex disassembly;0.0101892151540932!GO:0016251;general RNA polymerase II transcription factor activity;0.01059735018237!GO:0006497;protein amino acid lipidation;0.0106116060650002!GO:0000049;tRNA binding;0.010928110940097!GO:0000922;spindle pole;0.0115886546713167!GO:0006350;transcription;0.0116003846524495!GO:0007021;tubulin folding;0.0116003846524495!GO:0046467;membrane lipid biosynthetic process;0.0118362304939907!GO:0043624;cellular protein complex disassembly;0.012077664839826!GO:0004177;aminopeptidase activity;0.0120962239880674!GO:0006509;membrane protein ectodomain proteolysis;0.0125988447148524!GO:0033619;membrane protein proteolysis;0.0125988447148524!GO:0033673;negative regulation of kinase activity;0.0126249604324449!GO:0006469;negative regulation of protein kinase activity;0.0126249604324449!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0132665210045233!GO:0015002;heme-copper terminal oxidase activity;0.0132665210045233!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0132665210045233!GO:0004129;cytochrome-c oxidase activity;0.0132665210045233!GO:0005801;cis-Golgi network;0.0132665210045233!GO:0030041;actin filament polymerization;0.0136201960397196!GO:0030384;phosphoinositide metabolic process;0.0137237403033672!GO:0050811;GABA receptor binding;0.013964624591305!GO:0007034;vacuolar transport;0.0139881471000046!GO:0043488;regulation of mRNA stability;0.0140169933916321!GO:0043487;regulation of RNA stability;0.0140169933916321!GO:0030833;regulation of actin filament polymerization;0.0140355429417576!GO:0045892;negative regulation of transcription, DNA-dependent;0.0145729675707876!GO:0001527;microfibril;0.0147543177955827!GO:0005832;chaperonin-containing T-complex;0.0148733921504988!GO:0006289;nucleotide-excision repair;0.0151363340423695!GO:0005938;cell cortex;0.0153564718304424!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0155183863376365!GO:0006506;GPI anchor biosynthetic process;0.0155220693686006!GO:0022890;inorganic cation transmembrane transporter activity;0.0157030340212253!GO:0003756;protein disulfide isomerase activity;0.0157263846430667!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0157263846430667!GO:0030518;steroid hormone receptor signaling pathway;0.0162028000930868!GO:0019206;nucleoside kinase activity;0.0162965301221715!GO:0008033;tRNA processing;0.0164416263818392!GO:0005096;GTPase activator activity;0.016593093583618!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0166601879326331!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0168949906507965!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0169218838043528!GO:0043433;negative regulation of transcription factor activity;0.0170034731403483!GO:0016126;sterol biosynthetic process;0.0171728745757257!GO:0006611;protein export from nucleus;0.0171728745757257!GO:0031529;ruffle organization and biogenesis;0.0171728745757257!GO:0030659;cytoplasmic vesicle membrane;0.0172058596714007!GO:0051348;negative regulation of transferase activity;0.0173557745434629!GO:0043022;ribosome binding;0.0176146596373965!GO:0004527;exonuclease activity;0.018055536654171!GO:0043241;protein complex disassembly;0.0182017833760639!GO:0032535;regulation of cellular component size;0.0185458559693013!GO:0006740;NADPH regeneration;0.0188441055279065!GO:0006098;pentose-phosphate shunt;0.0188441055279065!GO:0006979;response to oxidative stress;0.0188712454698341!GO:0006378;mRNA polyadenylation;0.0191982197009659!GO:0000209;protein polyubiquitination;0.019224232883141!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0192727412189564!GO:0006505;GPI anchor metabolic process;0.019440551710353!GO:0006401;RNA catabolic process;0.0198895579997718!GO:0005637;nuclear inner membrane;0.0201516930125893!GO:0006376;mRNA splice site selection;0.0204273551271697!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0204273551271697!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0205005075208025!GO:0032940;secretion by cell;0.0206555607503623!GO:0048468;cell development;0.0206555607503623!GO:0006220;pyrimidine nucleotide metabolic process;0.0212505665455106!GO:0051287;NAD binding;0.0216104371226344!GO:0006405;RNA export from nucleus;0.0218256844766818!GO:0030125;clathrin vesicle coat;0.0225027937203517!GO:0030665;clathrin coated vesicle membrane;0.0225027937203517!GO:0031371;ubiquitin conjugating enzyme complex;0.0232741620985959!GO:0031625;ubiquitin protein ligase binding;0.0237996466002559!GO:0030032;lamellipodium biogenesis;0.024007567998222!GO:0005875;microtubule associated complex;0.0240604981469814!GO:0045792;negative regulation of cell size;0.0241042351440399!GO:0035035;histone acetyltransferase binding;0.0243670149619596!GO:0030832;regulation of actin filament length;0.0243670149619596!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0245585413862456!GO:0031543;peptidyl-proline dioxygenase activity;0.0249605094149059!GO:0051540;metal cluster binding;0.0250667059833338!GO:0051536;iron-sulfur cluster binding;0.0250667059833338!GO:0019798;procollagen-proline dioxygenase activity;0.0252888317677542!GO:0008017;microtubule binding;0.0257362536511157!GO:0022408;negative regulation of cell-cell adhesion;0.0266736757753127!GO:0030496;midbody;0.0267344958994931!GO:0030308;negative regulation of cell growth;0.0268669328313346!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0269482966966918!GO:0031902;late endosome membrane;0.027449008324571!GO:0016408;C-acyltransferase activity;0.0276709608729979!GO:0031418;L-ascorbic acid binding;0.0277975799649612!GO:0044433;cytoplasmic vesicle part;0.0285436434318024!GO:0009112;nucleobase metabolic process;0.0286227457077629!GO:0042158;lipoprotein biosynthetic process;0.0292044776306659!GO:0030119;AP-type membrane coat adaptor complex;0.0293589499892135!GO:0043130;ubiquitin binding;0.0298108886876306!GO:0032182;small conjugating protein binding;0.0298108886876306!GO:0005784;translocon complex;0.0304857624388828!GO:0006275;regulation of DNA replication;0.0309611099090554!GO:0009116;nucleoside metabolic process;0.0312564035023054!GO:0022406;membrane docking;0.031581645791054!GO:0048278;vesicle docking;0.031581645791054!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0316075521194333!GO:0032508;DNA duplex unwinding;0.0317732084667073!GO:0032392;DNA geometric change;0.0317732084667073!GO:0000118;histone deacetylase complex;0.0321811049777813!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0330900718376529!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0330900718376529!GO:0016584;nucleosome positioning;0.0341107114375736!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0347131858082439!GO:0003923;GPI-anchor transamidase activity;0.0350163742003446!GO:0016255;attachment of GPI anchor to protein;0.0350163742003446!GO:0042765;GPI-anchor transamidase complex;0.0350163742003446!GO:0006984;ER-nuclear signaling pathway;0.0351274587480695!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0357294238970181!GO:0006144;purine base metabolic process;0.0357612889918695!GO:0004003;ATP-dependent DNA helicase activity;0.036494510258333!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0365202939428654!GO:0047485;protein N-terminus binding;0.036624688053527!GO:0008632;apoptotic program;0.0368303704860895!GO:0006607;NLS-bearing substrate import into nucleus;0.0370014185192899!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0371709890247526!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0371709890247526!GO:0030508;thiol-disulfide exchange intermediate activity;0.0390470969246129!GO:0050790;regulation of catalytic activity;0.0390542574785066!GO:0005583;fibrillar collagen;0.0390608807534498!GO:0043065;positive regulation of apoptosis;0.0397424427081727!GO:0007030;Golgi organization and biogenesis;0.0398778170826223!GO:0008168;methyltransferase activity;0.0403220031459332!GO:0051539;4 iron, 4 sulfur cluster binding;0.0412669753227363!GO:0042168;heme metabolic process;0.0414339066161219!GO:0007041;lysosomal transport;0.0415170404322764!GO:0012506;vesicle membrane;0.0415438517070644!GO:0008234;cysteine-type peptidase activity;0.0417382998360279!GO:0006007;glucose catabolic process;0.0425957875686868!GO:0010468;regulation of gene expression;0.0430706626063325!GO:0022411;cellular component disassembly;0.0430885805824562!GO:0043068;positive regulation of programmed cell death;0.0436700364921774!GO:0005591;collagen type VIII;0.0444123579839791!GO:0005598;short-chain collagen;0.0444123579839791!GO:0006778;porphyrin metabolic process;0.0444123579839791!GO:0033013;tetrapyrrole metabolic process;0.0444123579839791!GO:0000096;sulfur amino acid metabolic process;0.0446247943991336!GO:0043492;ATPase activity, coupled to movement of substances;0.0446780946992735!GO:0006268;DNA unwinding during replication;0.0454800544248914!GO:0006897;endocytosis;0.0454800544248914!GO:0010324;membrane invagination;0.0454800544248914!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0458708845187002!GO:0030911;TPR domain binding;0.0459345631743822!GO:0001952;regulation of cell-matrix adhesion;0.0460880722547436!GO:0008538;proteasome activator activity;0.046282011936618!GO:0030433;ER-associated protein catabolic process;0.046282011936618!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.046282011936618!GO:0006904;vesicle docking during exocytosis;0.0468988385027789!GO:0005669;transcription factor TFIID complex;0.0477291741760141!GO:0030131;clathrin adaptor complex;0.0478971903998068!GO:0030522;intracellular receptor-mediated signaling pathway;0.0483648327347052!GO:0000792;heterochromatin;0.0485658055557519!GO:0043631;RNA polyadenylation;0.0487103433680398!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.048783676314104!GO:0051271;negative regulation of cell motility;0.048783676314104!GO:0001953;negative regulation of cell-matrix adhesion;0.048783676314104!GO:0008601;protein phosphatase type 2A regulator activity;0.048783676314104!GO:0005092;GDP-dissociation inhibitor activity;0.0490064702644869!GO:0016741;transferase activity, transferring one-carbon groups;0.0492087928472816 | |||
|sample_id=11559 | |sample_id=11559 | ||
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun | |sample_note=Originally library704 tailing failed, the remaining sample is being rerun | ||
| Line 76: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=NKX3-1:1.72081120194;GZF1:1.49948821603;HBP1_HMGB_SSRP1_UBTF:1.49783702121;SRF:1.30517503992;HSF1,2:1.29311691066;NR3C1:1.26235620153;PDX1:1.25220712509;HOX{A5,B5}:1.18984184197;XBP1:1.16898496326;EN1,2:1.14822918908;KLF4:1.13369745986;GCM1,2:1.08223836262;GFI1:1.05633969145;ALX4:0.988014240387;NFE2L1:0.984025511628;GFI1B:0.969605424755;NKX3-2:0.948899177194;TEAD1:0.937859438089;UFEwm:0.912998927488;MAFB:0.903907332748;SOX17:0.896573027438;EBF1:0.881426118463;POU3F1..4:0.866720012565;NKX2-2,8:0.85775507055;MYBL2:0.840445413269;HES1:0.82935575848;TP53:0.815330967873;PRDM1:0.814024650594;ZNF238:0.806413534118;MYB:0.782078211158;ESR1:0.781155320769;PPARG:0.769133522753;TFAP4:0.767122075912;PAX8:0.762902579618;NFIX:0.752095852788;HMX1:0.745775024705;HIF1A:0.723180200379;PRRX1,2:0.687142797336;TFDP1:0.684698015856;POU1F1:0.680957221253;NANOG{mouse}:0.672236674275;ZBTB6:0.659627217917;TAL1_TCF{3,4,12}:0.657338640263;GTF2I:0.655990017459;MZF1:0.651910103193;RXR{A,B,G}:0.638307903935;TFCP2:0.623286686192;GTF2A1,2:0.595715575045;HMGA1,2:0.589656447417;MAZ:0.583092797326;RXRA_VDR{dimer}:0.562704560709;TFAP2{A,C}:0.561782729266;CRX:0.53147462548;EVI1:0.53083184564;ELK1,4_GABP{A,B1}:0.525758268467;LEF1_TCF7_TCF7L1,2:0.520252414027;SMAD1..7,9:0.504209021139;ZNF384:0.49724361416;TBX4,5:0.487790612401;ATF6:0.463901141251;TLX1..3_NFIC{dimer}:0.46340226905;MTE{core}:0.4605169222;IKZF1:0.459957276258;NFATC1..3:0.45439015411;ZIC1..3:0.424971782416;YY1:0.418721579763;E2F1..5:0.409256380855;NRF1:0.404019581997;FOXD3:0.40066792557;GATA4:0.392940041143;NFE2L2:0.372022611815;FOXL1:0.312063194585;MEF2{A,B,C,D}:0.311717891906;STAT1,3:0.306369894183;ZNF148:0.305619467903;ZNF143:0.305116068995;HOX{A4,D4}:0.299739288088;BACH2:0.298796798115;POU5F1:0.295366432631;NR1H4:0.277440287032;CDC5L:0.27580326482;TBP:0.271335054536;XCPE1{core}:0.249051416518;EP300:0.248703444588;TFAP2B:0.244542345761;DMAP1_NCOR{1,2}_SMARC:0.226529262216;SPZ1:0.190375142238;T:0.18608247183;AHR_ARNT_ARNT2:0.174819767072;HLF:0.169471609672;NFY{A,B,C}:0.159412407077;ARID5B:0.149611775466;LHX3,4:0.145638492559;TEF:0.129172263269;HAND1,2:0.106977779257;PAX1,9:0.102494491546;PATZ1:0.0861637868515;NKX2-3_NKX2-5:0.0765485180519;NFE2:0.0497223318791;FOS_FOS{B,L1}_JUN{B,D}:0.0349329370187;JUN:0.033738769315;PAX5:0.013954135291;NKX6-1,2:-0.0220117318857;FOXM1:-0.0345109137548;TOPORS:-0.0432804211826;HIC1:-0.0433789782971;SOX2:-0.0449098494298;RUNX1..3:-0.0777100888846;FOSL2:-0.0842787322943;RREB1:-0.088135762934;GLI1..3:-0.0886692742073;RFX1:-0.095368754228;FOX{I1,J2}:-0.100891228675;HNF1A:-0.151495599511;ADNP_IRX_SIX_ZHX:-0.163587385045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.168499804511;TGIF1:-0.171520076131;ELF1,2,4:-0.176118447947;AIRE:-0.1838735713;SOX5:-0.213013678654;NHLH1,2:-0.215500947651;PAX3,7:-0.216439615098;HOXA9_MEIS1:-0.216941578887;MED-1{core}:-0.260865901222;NANOG:-0.279565807897;MYFfamily:-0.296079710643;FOXO1,3,4:-0.313939916106;NR5A1,2:-0.315612124328;HNF4A_NR2F1,2:-0.316228220209;EGR1..3:-0.323346916623;CEBPA,B_DDIT3:-0.331175615323;BPTF:-0.331579950253;ZFP161:-0.332450266633;VSX1,2:-0.345709438053;NFIL3:-0.360574755953;SPI1:-0.370925688957;PAX4:-0.371078951545;OCT4_SOX2{dimer}:-0.395160838678;FOXA2:-0.398222245675;ETS1,2:-0.399580712619;SP1:-0.403506450322;NR6A1:-0.403911949117;POU6F1:-0.408094971497;REST:-0.422542949165;PAX2:-0.426746011103;MTF1:-0.434531267984;SPIB:-0.441921522888;STAT2,4,6:-0.444579564182;ONECUT1,2:-0.462346908805;IRF1,2:-0.464233295019;PBX1:-0.467801746795;CUX2:-0.473645944132;FOXN1:-0.47783669321;ESRRA:-0.487002119278;PAX6:-0.498580103196;CREB1:-0.498918556338;SOX{8,9,10}:-0.511503231549;NFKB1_REL_RELA:-0.541216174829;ZNF423:-0.558295562816;AR:-0.568036086583;ALX1:-0.591386460597;STAT5{A,B}:-0.600824831347;ATF5_CREB3:-0.609071854602;FOX{D1,D2}:-0.612190929651;NKX2-1,4:-0.625016102587;FOXP1:-0.662257626078;TLX2:-0.664905349878;DBP:-0.683897528393;HOX{A6,A7,B6,B7}:-0.683909192374;POU2F1..3:-0.696401636079;ATF4:-0.715548316392;BREu{core}:-0.73179128326;SNAI1..3:-0.732262586825;RFX2..5_RFXANK_RFXAP:-0.732331909207;bHLH_family:-0.741548621015;FOXP3:-0.750549555867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.763786964309;FOXQ1:-0.770872770943;SREBF1,2:-0.781335157953;PITX1..3:-0.78669889628;GATA6:-0.841439430953;IRF7:-0.848370942999;ATF2:-0.849451704236;ZBTB16:-0.905886780207;RORA:-0.939220919533;ZEB1:-0.953635316194;FOX{F1,F2,J1}:-1.01221367054;RBPJ:-1.05651490772;IKZF2:-1.06214738977;LMO2:-1.14554714614;CDX1,2,4:-1.15501233188;MYOD1:-1.21301425828 | |top_motifs=NKX3-1:1.72081120194;GZF1:1.49948821603;HBP1_HMGB_SSRP1_UBTF:1.49783702121;SRF:1.30517503992;HSF1,2:1.29311691066;NR3C1:1.26235620153;PDX1:1.25220712509;HOX{A5,B5}:1.18984184197;XBP1:1.16898496326;EN1,2:1.14822918908;KLF4:1.13369745986;GCM1,2:1.08223836262;GFI1:1.05633969145;ALX4:0.988014240387;NFE2L1:0.984025511628;GFI1B:0.969605424755;NKX3-2:0.948899177194;TEAD1:0.937859438089;UFEwm:0.912998927488;MAFB:0.903907332748;SOX17:0.896573027438;EBF1:0.881426118463;POU3F1..4:0.866720012565;NKX2-2,8:0.85775507055;MYBL2:0.840445413269;HES1:0.82935575848;TP53:0.815330967873;PRDM1:0.814024650594;ZNF238:0.806413534118;MYB:0.782078211158;ESR1:0.781155320769;PPARG:0.769133522753;TFAP4:0.767122075912;PAX8:0.762902579618;NFIX:0.752095852788;HMX1:0.745775024705;HIF1A:0.723180200379;PRRX1,2:0.687142797336;TFDP1:0.684698015856;POU1F1:0.680957221253;NANOG{mouse}:0.672236674275;ZBTB6:0.659627217917;TAL1_TCF{3,4,12}:0.657338640263;GTF2I:0.655990017459;MZF1:0.651910103193;RXR{A,B,G}:0.638307903935;TFCP2:0.623286686192;GTF2A1,2:0.595715575045;HMGA1,2:0.589656447417;MAZ:0.583092797326;RXRA_VDR{dimer}:0.562704560709;TFAP2{A,C}:0.561782729266;CRX:0.53147462548;EVI1:0.53083184564;ELK1,4_GABP{A,B1}:0.525758268467;LEF1_TCF7_TCF7L1,2:0.520252414027;SMAD1..7,9:0.504209021139;ZNF384:0.49724361416;TBX4,5:0.487790612401;ATF6:0.463901141251;TLX1..3_NFIC{dimer}:0.46340226905;MTE{core}:0.4605169222;IKZF1:0.459957276258;NFATC1..3:0.45439015411;ZIC1..3:0.424971782416;YY1:0.418721579763;E2F1..5:0.409256380855;NRF1:0.404019581997;FOXD3:0.40066792557;GATA4:0.392940041143;NFE2L2:0.372022611815;FOXL1:0.312063194585;MEF2{A,B,C,D}:0.311717891906;STAT1,3:0.306369894183;ZNF148:0.305619467903;ZNF143:0.305116068995;HOX{A4,D4}:0.299739288088;BACH2:0.298796798115;POU5F1:0.295366432631;NR1H4:0.277440287032;CDC5L:0.27580326482;TBP:0.271335054536;XCPE1{core}:0.249051416518;EP300:0.248703444588;TFAP2B:0.244542345761;DMAP1_NCOR{1,2}_SMARC:0.226529262216;SPZ1:0.190375142238;T:0.18608247183;AHR_ARNT_ARNT2:0.174819767072;HLF:0.169471609672;NFY{A,B,C}:0.159412407077;ARID5B:0.149611775466;LHX3,4:0.145638492559;TEF:0.129172263269;HAND1,2:0.106977779257;PAX1,9:0.102494491546;PATZ1:0.0861637868515;NKX2-3_NKX2-5:0.0765485180519;NFE2:0.0497223318791;FOS_FOS{B,L1}_JUN{B,D}:0.0349329370187;JUN:0.033738769315;PAX5:0.013954135291;NKX6-1,2:-0.0220117318857;FOXM1:-0.0345109137548;TOPORS:-0.0432804211826;HIC1:-0.0433789782971;SOX2:-0.0449098494298;RUNX1..3:-0.0777100888846;FOSL2:-0.0842787322943;RREB1:-0.088135762934;GLI1..3:-0.0886692742073;RFX1:-0.095368754228;FOX{I1,J2}:-0.100891228675;HNF1A:-0.151495599511;ADNP_IRX_SIX_ZHX:-0.163587385045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.168499804511;TGIF1:-0.171520076131;ELF1,2,4:-0.176118447947;AIRE:-0.1838735713;SOX5:-0.213013678654;NHLH1,2:-0.215500947651;PAX3,7:-0.216439615098;HOXA9_MEIS1:-0.216941578887;MED-1{core}:-0.260865901222;NANOG:-0.279565807897;MYFfamily:-0.296079710643;FOXO1,3,4:-0.313939916106;NR5A1,2:-0.315612124328;HNF4A_NR2F1,2:-0.316228220209;EGR1..3:-0.323346916623;CEBPA,B_DDIT3:-0.331175615323;BPTF:-0.331579950253;ZFP161:-0.332450266633;VSX1,2:-0.345709438053;NFIL3:-0.360574755953;SPI1:-0.370925688957;PAX4:-0.371078951545;OCT4_SOX2{dimer}:-0.395160838678;FOXA2:-0.398222245675;ETS1,2:-0.399580712619;SP1:-0.403506450322;NR6A1:-0.403911949117;POU6F1:-0.408094971497;REST:-0.422542949165;PAX2:-0.426746011103;MTF1:-0.434531267984;SPIB:-0.441921522888;STAT2,4,6:-0.444579564182;ONECUT1,2:-0.462346908805;IRF1,2:-0.464233295019;PBX1:-0.467801746795;CUX2:-0.473645944132;FOXN1:-0.47783669321;ESRRA:-0.487002119278;PAX6:-0.498580103196;CREB1:-0.498918556338;SOX{8,9,10}:-0.511503231549;NFKB1_REL_RELA:-0.541216174829;ZNF423:-0.558295562816;AR:-0.568036086583;ALX1:-0.591386460597;STAT5{A,B}:-0.600824831347;ATF5_CREB3:-0.609071854602;FOX{D1,D2}:-0.612190929651;NKX2-1,4:-0.625016102587;FOXP1:-0.662257626078;TLX2:-0.664905349878;DBP:-0.683897528393;HOX{A6,A7,B6,B7}:-0.683909192374;POU2F1..3:-0.696401636079;ATF4:-0.715548316392;BREu{core}:-0.73179128326;SNAI1..3:-0.732262586825;RFX2..5_RFXANK_RFXAP:-0.732331909207;bHLH_family:-0.741548621015;FOXP3:-0.750549555867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.763786964309;FOXQ1:-0.770872770943;SREBF1,2:-0.781335157953;PITX1..3:-0.78669889628;GATA6:-0.841439430953;IRF7:-0.848370942999;ATF2:-0.849451704236;ZBTB16:-0.905886780207;RORA:-0.939220919533;ZEB1:-0.953635316194;FOX{F1,F2,J1}:-1.01221367054;RBPJ:-1.05651490772;IKZF2:-1.06214738977;LMO2:-1.14554714614;CDX1,2,4:-1.15501233188;MYOD1:-1.21301425828 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11559-120D2;search_select_hide=table117:FF:11559-120D2 | |||
}} | }} | ||
Latest revision as of 18:09, 4 June 2020
| Name: | Fibroblast - skin spinal muscular atrophy, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11912 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11912
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11912
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.431 |
| 10 | 10 | 0.857 |
| 100 | 100 | 0.58 |
| 101 | 101 | 0.292 |
| 102 | 102 | 0.171 |
| 103 | 103 | 0.626 |
| 104 | 104 | 0.953 |
| 105 | 105 | 0.684 |
| 106 | 106 | 0.119 |
| 107 | 107 | 0.986 |
| 108 | 108 | 0.826 |
| 109 | 109 | 0.698 |
| 11 | 11 | 0.696 |
| 110 | 110 | 0.663 |
| 111 | 111 | 0.507 |
| 112 | 112 | 0.949 |
| 113 | 113 | 0.00199 |
| 114 | 114 | 0.907 |
| 115 | 115 | 0.435 |
| 116 | 116 | 0.28 |
| 117 | 117 | 0.391 |
| 118 | 118 | 0.637 |
| 119 | 119 | 0.192 |
| 12 | 12 | 0.776 |
| 120 | 120 | 0.638 |
| 121 | 121 | 0.591 |
| 122 | 122 | 0.217 |
| 123 | 123 | 3.90308e-5 |
| 124 | 124 | 0.316 |
| 125 | 125 | 0.413 |
| 126 | 126 | 0.405 |
| 127 | 127 | 0.828 |
| 128 | 128 | 0.292 |
| 129 | 129 | 0.506 |
| 13 | 13 | 0.689 |
| 130 | 130 | 0.0504 |
| 131 | 131 | 0.506 |
| 132 | 132 | 0.68 |
| 133 | 133 | 0.496 |
| 134 | 134 | 0.208 |
| 135 | 135 | 0.543 |
| 136 | 136 | 0.16 |
| 137 | 137 | 0.915 |
| 138 | 138 | 0.259 |
| 139 | 139 | 0.0331 |
| 14 | 14 | 0.248 |
| 140 | 140 | 0.145 |
| 141 | 141 | 0.038 |
| 142 | 142 | 0.676 |
| 143 | 143 | 0.917 |
| 144 | 144 | 0.559 |
| 145 | 145 | 0.755 |
| 146 | 146 | 0.949 |
| 147 | 147 | 0.264 |
| 148 | 148 | 0.0209 |
| 149 | 149 | 0.0346 |
| 15 | 15 | 0.465 |
| 150 | 150 | 0.502 |
| 151 | 151 | 0.33 |
| 152 | 152 | 0.146 |
| 153 | 153 | 0.614 |
| 154 | 154 | 0.412 |
| 155 | 155 | 0.00956 |
| 156 | 156 | 0.659 |
| 157 | 157 | 0.149 |
| 158 | 158 | 0.00251 |
| 159 | 159 | 0.171 |
| 16 | 16 | 0.487 |
| 160 | 160 | 0.851 |
| 161 | 161 | 0.0656 |
| 162 | 162 | 0.726 |
| 163 | 163 | 0.344 |
| 164 | 164 | 0.341 |
| 165 | 165 | 0.16 |
| 166 | 166 | 0.0607 |
| 167 | 167 | 0.496 |
| 168 | 168 | 0.31 |
| 169 | 169 | 0.226 |
| 17 | 17 | 0.966 |
| 18 | 18 | 0.239 |
| 19 | 19 | 0.0258 |
| 2 | 2 | 0.403 |
| 20 | 20 | 0.354 |
| 21 | 21 | 0.137 |
| 22 | 22 | 0.431 |
| 23 | 23 | 0.975 |
| 24 | 24 | 0.985 |
| 25 | 25 | 0.604 |
| 26 | 26 | 0.897 |
| 27 | 27 | 0.942 |
| 28 | 28 | 0.522 |
| 29 | 29 | 0.759 |
| 3 | 3 | 0.805 |
| 30 | 30 | 0.227 |
| 31 | 31 | 0.964 |
| 32 | 32 | 7.88631e-6 |
| 33 | 33 | 0.353 |
| 34 | 34 | 0.968 |
| 35 | 35 | 0.386 |
| 36 | 36 | 0.0722 |
| 37 | 37 | 0.43 |
| 38 | 38 | 0.56 |
| 39 | 39 | 0.401 |
| 4 | 4 | 0.802 |
| 40 | 40 | 0.26 |
| 41 | 41 | 0.465 |
| 42 | 42 | 0.729 |
| 43 | 43 | 0.652 |
| 44 | 44 | 0.985 |
| 45 | 45 | 0.9 |
| 46 | 46 | 0.856 |
| 47 | 47 | 0.72 |
| 48 | 48 | 0.645 |
| 49 | 49 | 0.105 |
| 5 | 5 | 0.699 |
| 50 | 50 | 0.725 |
| 51 | 51 | 0.615 |
| 52 | 52 | 0.709 |
| 53 | 53 | 0.259 |
| 54 | 54 | 0.981 |
| 55 | 55 | 0.382 |
| 56 | 56 | 0.749 |
| 57 | 57 | 0.514 |
| 58 | 58 | 0.202 |
| 59 | 59 | 0.294 |
| 6 | 6 | 0.575 |
| 60 | 60 | 0.296 |
| 61 | 61 | 0.265 |
| 62 | 62 | 0.456 |
| 63 | 63 | 0.719 |
| 64 | 64 | 0.554 |
| 65 | 65 | 0.861 |
| 66 | 66 | 0.431 |
| 67 | 67 | 0.623 |
| 68 | 68 | 0.712 |
| 69 | 69 | 0.762 |
| 7 | 7 | 0.131 |
| 70 | 70 | 0.139 |
| 71 | 71 | 0.959 |
| 72 | 72 | 0.227 |
| 73 | 73 | 0.138 |
| 74 | 74 | 0.105 |
| 75 | 75 | 0.556 |
| 76 | 76 | 0.457 |
| 77 | 77 | 0.0656 |
| 78 | 78 | 0.233 |
| 79 | 79 | 0.17 |
| 8 | 8 | 0.993 |
| 80 | 80 | 0.596 |
| 81 | 81 | 0.49 |
| 82 | 82 | 0.922 |
| 83 | 83 | 0.2 |
| 84 | 84 | 0.278 |
| 85 | 85 | 0.685 |
| 86 | 86 | 0.4 |
| 87 | 87 | 0.188 |
| 88 | 88 | 0.741 |
| 89 | 89 | 0.36 |
| 9 | 9 | 0.83 |
| 90 | 90 | 0.685 |
| 91 | 91 | 0.771 |
| 92 | 92 | 0.805 |
| 93 | 93 | 0.32 |
| 94 | 94 | 0.974 |
| 95 | 95 | 0.944 |
| 96 | 96 | 0.922 |
| 97 | 97 | 0.581 |
| 98 | 98 | 0.154 |
| 99 | 99 | 0.0669 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11912
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000251 human fibroblast - skin spinal muscular atrophy sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
