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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005839
|accession_numbers=CAGE;DRX008397;DRR009269;DRZ000694;DRZ002079;DRZ012044;DRZ013429
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000988,CL:0000548,CL:0000012,CL:0002320,CL:0002371,CL:0000183,CL:0000630,CL:0000004,CL:0000255,CL:0000669,CL:0002575
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0002575
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000133
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.93!844.82!MYOG;;chr13:100634031..100634045,+!p1@ZIC2!2.32!205.54!ZIC2;;chr3:147127142..147127168,+!p1@ZIC1!2.11!127.31!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!2.06!113.92!ZIC1;;chr2:19558373..19558392,-!p1@OSR1!1.93!220.30!OSR1;;chr11:17741111..17741124,+!p1@MYOD1!1.92!81.32!MYOD1;;chr19:46800289..46800327,+!p2@HIF3A!1.88!74.81!HIF3A;;chr5:72744594..72744609,-!p1@FOXD1!1.74!235.40!FOXD1;;chr17:1959369..1959388,+!p2@HIC1!1.74!136.91!HIC1;;chr2:45236540..45236577,-!p1@SIX2!1.72!51.47!SIX2;;chr14:61116183..61116208,-!p1@SIX1!1.68!171.91!SIX1;;chr6:85474299..85474324,-!p1@TBX18!1.63!73.78!TBX18;;chr5:72744445..72744466,-!p2@FOXD1!1.62!66.91!FOXD1;;chr5:72743793..72743855,-!p4@FOXD1!1.62!47.35!FOXD1;;chr13:100634004..100634025,+!p2@ZIC2!1.60!38.43!ZIC2;;chr1:40105299..40105326,-!p1@HEYL!1.52!31.91!HEYL;;chr3:147139053..147139112,+!p5@ZIC1!1.51!31.57!ZIC1;;chr5:72744562..72744573,-!p3@FOXD1!1.49!37.06!FOXD1;;chr5:72744336..72744359,-!p5@FOXD1!1.43!26.08!FOXD1;;chr3:147111231..147111281,+!p3@ZIC1!1.41!24.71!ZIC1;;chr5:92918919..92918942,+!p1@NR2F1!1.39!102.94!NR2F1;;chr13:100634130..100634143,+!p3@ZIC2!1.39!23.68!ZIC2;;chr7:19157248..19157268,-!p1@TWIST1!1.36!60.05!TWIST1;;chr6:1389789..1389821,+!p1@FOXF2!1.34!28.82!FOXF2;;chr16:86600426..86600441,+!p1@FOXC2!1.33!49.07!FOXC2;;chr11:17741254..17741282,+!p2@MYOD1!1.33!20.25!MYOD1;;chr17:1958388..1958404,+!p1@HIC1!1.32!123.87!HIC1;;chr2:5832508..5832524,+!p1@SOX11!1.32!19.90!SOX11;;chr15:80843484..80843499,+!p5@ARNT2!1.31!19.56!ARNT2;;chr2:239148671..239148686,-!p1@HES6!1.29!66.57!HES6;;chr7:44143925..44143970,+!p1@AEBP1!1.26!373.34!AEBP1;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.81!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!1.24!49.76!TBX2;;chr20:39317868..39317884,-!p1@MAFB!1.22!180.49!MAFB;;chr13:100638100..100638115,+!p4@ZIC2!1.22!15.78!ZIC2;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.15!CREB3L1;;chr7:44143978..44143989,+!p2@AEBP1!1.19!26.42!AEBP1;;chr22:19748231..19748317,+!p1@TBX1!1.19!14.41!TBX1;;chr15:96873984..96873999,+!p3@NR2F2!1.18!102.94!NR2F2;;chr7:19157043..19157088,-!p2@TWIST1!1.18!35.69!TWIST1;;chr7:150946015..150946070,-!p3@SMARCD3!1.16!29.17!SMARCD3;;chr12:54772960..54773015,-!p3@ZNF385A!1.15!63.48!ZNF385A;;chr16:86600870..86600921,+!p2@FOXC2!1.15!13.04!FOXC2;;chr20:62462566..62462631,-!p1@ZBTB46!1.13!23.68!ZBTB46;;chr12:81110684..81110700,+!p1@MYF5!1.13!12.35!MYF5;;chr8:49833948..49833973,-!p2@SNAI2!1.11!76.18!SNAI2;;chr15:96874145..96874166,+!p7@NR2F2!1.11!22.65!NR2F2;;chr1:33721900..33721921,+!p2@ZNF362!1.10!28.48!ZNF362;;chr11:46299539..46299620,+!p2@CREB3L1!1.09!19.22!CREB3L1;;chr15:80696703..80696754,+!p1@ARNT2!1.09!15.10!ARNT2;;chr11:47279248..47279264,+!p3@NR1H3!1.09!13.04!NR1H3;;chr15:96874012..96874042,+!p2@NR2F2!1.08!99.51!NR2F2;;chr5:158526917..158526932,-!p1@EBF1!1.07!27.11!EBF1;;chr2:45236579..45236596,-!p2@SIX2!1.07!10.64!SIX2;;chr11:125034605..125034636,+!p2@PKNOX2!1.07!10.64!PKNOX2;;chr15:96874927..96874938,+!p8@NR2F2!1.06!22.65!NR2F2;;chr12:3068544..3068597,+!p1@TEAD4!1.05!61.42!TEAD4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.05!10.98!GLIS1;;chr12:57522813..57522825,-!p10@STAT6!1.05!10.29!STAT6;;chr2:85981222..85981259,+!p2@ATOH8!1.04!16.47!ATOH8;;chr7:44143997..44144008,+!p3@AEBP1!1.04!12.70!AEBP1;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.64!HEY2;;chr3:147114260..147114290,-!p3@ZIC4!1.01!9.26!ZIC4;;chr19:46806868..46806883,+!p3@HIF3A!1.01!9.26!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.55!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!1.00!15.78!TBX2;;chr14:61116168..61116180,-!p2@SIX1!1.00!10.29!SIX1;;chr13:100623375..100623425,-!p1@ZIC5!1.00!8.92!ZIC5;;chr17:59477275..59477286,+!p3@TBX2!0.99!11.67!TBX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.58!PKNOX2;;chr3:147124307..147124336,-!p2@ZIC4!0.98!8.58!ZIC4;;chr4:4861385..4861398,+!p1@MSX1!0.97!25.39!MSX1;;chrX:25034067..25034088,-!p1@ARX!0.97!8.24!ARX;;chr5:92918894..92918912,+!p2@NR2F1!0.95!26.42!NR2F1;;chr15:42749722..42749739,-!p2@ZFP106!0.95!14.41!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!0.93!10.98!ZBTB16;;chr7:150945663..150945692,-!p5@SMARCD3!0.93!7.55!SMARCD3;;chr16:86600458..86600461,+!p3@FOXC2!0.93!7.55!FOXC2;;chr15:96874244..96874259,+!p5@NR2F2!0.91!17.84!NR2F2;;chr16:1031762..1031781,+!p1@SOX8!0.91!7.21!SOX8;;chr3:147111317..147111328,+!p8@ZIC1!0.91!7.21!ZIC1;;chr15:96873921..96873946,+!p1@NR2F2!0.90!205.89!NR2F2;;chr16:8962202..8962222,-!p3@CARHSP1!0.90!12.70!CARHSP1;;chr16:86601088..86601105,+!p5@FOXC2!0.90!6.86!FOXC2;;chr11:17741084..17741094,+!p3@MYOD1!0.90!6.86!MYOD1;;chr1:119530493..119530572,-!p1@TBX15!0.90!6.86!TBX15;;chr19:36134528..36134563,+!p1@ETV2!0.89!19.90!ETV2;;chr19:45260775..45260838,+!p5@BCL3!0.89!8.92!BCL3;;chr21:47063625..47063658,+!p1@PCBP3!0.88!30.20!PCBP3;;chr2:74229812..74229867,+!p1@TET3!0.88!17.16!TET3;;chr12:3068634..3068656,+!p5@TEAD4!0.88!6.52!TEAD4;;chr15:96874216..96874236,+!p13@NR2F2!0.87!10.29!NR2F2;;chr1:170633348..170633399,+!p2@PRRX1!0.87!8.92!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.21!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.86!6.86!NR2F1;;chr13:100634088..100634099,+!p5@ZIC2!0.86!6.18!ZIC2;;chr9:130954041..130954121,-!p2@CIZ1!0.85!27.79!CIZ1;;chr14:21994337..21994442,-!p1@SALL2!0.85!17.84!SALL2;;chr16:54320646..54320672,-!p2@IRX3!0.85!9.61!IRX3;;chr19:49864746..49864780,-!p2@TEAD2!0.85!8.58!TEAD2;;chr21:36421535..36421610,-!p2@RUNX1!0.83!21.96!RUNX1;;chr8:80679993..80680011,-!p1@HEY1!0.83!8.58!HEY1;;chr5:92919100..92919135,+!p3@NR2F1!0.83!7.21!NR2F1;;chr1:59249732..59249749,-!p2@JUN!0.81!71.37!JUN;;chr12:66218183..66218209,+!p4@HMGA2!0.81!10.98!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!0.81!9.61!TCF12;;chr16:54320617..54320643,-!p3@IRX3!0.81!7.21!IRX3;;chr19:2867325..2867348,+!p1@ZNF556!0.81!5.49!ZNF556;;chr1:119530636..119530653,-!p2@TBX15!0.81!5.49!TBX15;;chr16:79634624..79634642,-!p1@MAF!0.80!22.65!MAF;;chr16:79633894..79633954,-!p3@MAF!0.80!10.64!MAF;;chr1:151032922..151032951,+!p2@MLLT11!0.80!9.26!MLLT11;;chr8:48650715..48650735,-!p1@CEBPD!0.79!717.17!CEBPD;;chr22:19746969..19746987,+!p2@TBX1!0.79!5.15!TBX1;;chr2:19558327..19558334,-!p2@OSR1!0.79!5.15!OSR1;;chr2:45236829..45236840,-!p3@SIX2!0.79!5.15!SIX2;;chr4:111558135..111558198,-!p2@PITX2!0.79!5.15!PITX2;;chr12:57504975..57505019,-!p2@STAT6!0.78!21.96!STAT6;;chr19:44037546..44037594,+!p1@ZNF575!0.78!10.98!ZNF575;;chr17:46126136..46126152,+!p1@NFE2L1!0.77!274.86!NFE2L1;;chr19:49865646..49865718,-!p1@TEAD2!0.77!45.64!TEAD2;;chr11:61520075..61520136,+!p1@C11orf9!0.77!10.98!C11orf9;;chr6:1610293..1610310,+!p1@FOXC1!0.77!8.58!FOXC1;;chrX:106960285..106960299,-!p1@TSC22D3!0.76!141.38!TSC22D3;;chr14:21994449..21994524,-!p2@SALL2!0.76!15.44!SALL2;;chr5:92919068..92919082,+!p5@NR2F1!0.76!5.83!NR2F1;;chr11:17741228..17741243,+!p4@MYOD1!0.76!4.80!MYOD1;;chr11:46299443..46299459,+!p4@CREB3L1!0.76!4.80!CREB3L1;;chr3:147114993..147115013,-!p5@ZIC4!0.76!4.80!ZIC4;;chr3:147139152..147139163,+!p15@ZIC1!0.76!4.80!ZIC1;;chr19:44123734..44123796,-!p1@ZNF428!0.75!190.44!ZNF428;;chr8:49833978..49833996,-!p1@SNAI2!0.74!103.63!SNAI2;;chr22:42229246..42229270,+!p2@SREBF2!0.74!63.14!SREBF2;;chr2:5832493..5832507,+!p2@SOX11!0.74!4.46!SOX11;;chr2:85981107..85981120,+!p3@ATOH8!0.74!4.46!ATOH8;;chr3:147127489..147127503,+!p11@ZIC1!0.74!4.46!ZIC1;;chrX:107018836..107018862,-!p8@TSC22D3!0.74!4.46!TSC22D3;;chr12:3068668..3068689,+!p7@TEAD4!0.74!4.46!TEAD4;;chr9:137218281..137218340,+!p1@RXRA!0.73!139.32!RXRA;;chr15:96874063..96874074,+!p10@NR2F2!0.73!8.58!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!0.73!4.80!PRRX1;;chr19:46272462..46272562,-!p1@SIX5!0.72!19.56!SIX5;;chr15:96869255..96869291,+!p6@NR2F2!0.72!8.24!NR2F2;;chr12:125002739..125002756,-!p6@NCOR2!0.72!6.52!NCOR2;;chr7:150945754..150945789,-!p2@SMARCD3!0.71!14.07!SMARCD3;;chr9:16870659..16870675,-!p2@BNC2!0.71!5.15!BNC2;;chr3:147111198..147111225,+!p4@ZIC1!0.71!4.12!ZIC1;;chr3:147111285..147111298,+!p10@ZIC1!0.71!4.12!ZIC1;;chr2:121493425..121493474,+!p1@GLI2!0.70!9.61!GLI2;;chr1:33721873..33721898,+!p3@ZNF362!0.70!8.24!ZNF362;;chr12:3069037..3069119,+!p2@TEAD4!0.69!15.10!TEAD4;;chr15:31618903..31618962,+!p3@KLF13!0.69!11.67!KLF13;;chr14:24837368..24837401,+!p1@NFATC4!0.69!9.95!NFATC4;;chr7:100076723..100076737,-!p3@TSC22D4!0.69!6.52!TSC22D4;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.69!5.15!PRDM11;;chr1:8483723..8483752,-!p12@RERE!0.68!6.18!RERE;;chr2:24714729..24714761,+!p1@NCOA1!0.68!3.77!NCOA1;;chr3:147138953..147138965,+!p19@ZIC1!0.68!3.77!ZIC1;;chr7:100076673..100076682,-!p7@TSC22D4!0.68!3.77!TSC22D4;;chr16:86601052..86601066,+!p4@FOXC2!0.68!3.77!FOXC2;;chr2:71127699..71127744,+!p1@VAX2!0.67!8.24!VAX2;;chr16:30582888..30582923,-!p3@ZNF688!0.67!6.18!ZNF688;;chr16:54320101..54320125,-!p4@IRX3!0.67!5.49!IRX3;;chr17:38498510..38498540,+!p7@RARA!0.67!4.46!RARA;;chr3:52001396..52001425,-!p4@PCBP4!0.66!6.86!PCBP4;;chrX:107018969..107019024,-!p6@TSC22D3!0.66!5.15!TSC22D3;;chr1:23696348..23696363,-!p4@ZNF436!0.66!4.12!ZNF436;;chr9:137217986..137218049,+!p3@RXRA!0.65!11.32!RXRA;;chr20:306051..306096,+!p3@SOX12!0.65!10.29!SOX12;;chr5:92919375..92919438,+!p6@NR2F1!0.65!3.77!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.65!3.43!NR2F1;;chr8:30890810..30890880,-!p1@PURG!0.65!3.43!PURG;;chr11:125034586..125034604,+!p3@PKNOX2!0.65!3.43!PKNOX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.64!39.12!GLIS2;;chr16:29817433..29817468,+!p8@MAZ!0.64!12.01!MAZ;;chrX:106960221..106960236,-!p3@TSC22D3!0.64!10.64!TSC22D3;;chr19:926055..926068,+!p2@ARID3A!0.64!8.24!ARID3A;;chr1:23696308..23696339,-!p2@ZNF436!0.64!7.89!ZNF436;;chr19:56652686..56652701,+!p3@ZNF444!0.64!6.52!ZNF444;;chr5:178368186..178368238,+!p1@ZNF454!0.64!6.52!ZNF454;;chr12:54785074..54785122,-!p2@ZNF385A!0.64!5.49!ZNF385A;;chr12:66218212..66218244,+!p5@HMGA2!0.64!5.15!HMGA2;;chr1:41827095..41827155,+!p1@FOXO6!0.64!4.80!FOXO6;;chr20:55204351..55204377,+!p1@TFAP2C!0.64!4.46!TFAP2C;;chr17:42296855..42296894,-!p4@UBTF!0.63!14.41!UBTF;;chr16:29818199..29818216,+!p11@M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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg38.nobarcode.ctss.bed.gz
|id=FF:11571-120E5
|id=FF:11571-120E5
|is_a=EFO:0002091;;FF:0000133
|is_a=EFO:0002091;;FF:0000133
|is_obsolete=
|is_obsolete=
|library_id=CNhs12079
|library_id_phase_based=2:CNhs12079
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11571
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11571
|name=Pericytes, donor2
|name=Pericytes, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12079,LSID838,release011,COMPLETED
|profile_hcage=CNhs12079,LSID838,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_box=120
|rna_catalog_number=SC1205
|rna_catalog_number=SC1205
Line 56: Line 75:
|rna_rin=9.7
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=120E5
|rna_tube_id=1.20E+07
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 80: Line 100:
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|top_motifs=TAL1_TCF{3,4,12}:2.90201906003;ESR1:2.84359123263;RXR{A,B,G}:2.48468646214;RXRA_VDR{dimer}:2.44708363043;NR5A1,2:2.42253959001;ZIC1..3:2.3612843481;GTF2A1,2:2.32100820896;TFAP4:2.31928388377;ZNF423:2.29685367775;TFCP2:2.2351107951;GLI1..3:2.22447988681;EBF1:2.14751292678;ESRRA:1.87455603111;TFAP2{A,C}:1.84313701765;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58240348343;ZNF238:1.57213006589;HES1:1.47363486487;MEF2{A,B,C,D}:1.46431748312;GZF1:1.28704904574;SRF:1.26543889199;PATZ1:1.25523237202;ZNF148:1.20870403976;RREB1:1.17372574405;TFAP2B:1.1318602713;NHLH1,2:1.12812320852;FOXM1:1.10511591171;MAZ:1.09773108999;TLX1..3_NFIC{dimer}:1.06733356495;PAX1,9:1.06481644893;XCPE1{core}:1.0636268821;IKZF1:0.978297845525;PAX5:0.946917618464;SP1:0.942925474771;HAND1,2:0.922152889358;MYOD1:0.905710556192;NR3C1:0.902580900477;TBP:0.873285967689;HIC1:0.852791730343;GTF2I:0.827872814593;ZBTB6:0.823915800478;ATF6:0.810226416356;FOXL1:0.780603544548;RORA:0.778413814717;TEAD1:0.739417093177;GFI1B:0.686796782278;MED-1{core}:0.680974092;NR6A1:0.679146873087;MZF1:0.619656152197;SPZ1:0.589045965608;LEF1_TCF7_TCF7L1,2:0.578496207275;HOX{A5,B5}:0.575869246994;SOX5:0.559374397346;KLF4:0.525301370726;UFEwm:0.518642225761;XBP1:0.482769086033;REST:0.472724334909;TP53:0.446398434865;POU6F1:0.443272104781;HMX1:0.401827471602;EGR1..3:0.37662931782;SMAD1..7,9:0.374720982819;NKX2-3_NKX2-5:0.367769849239;bHLH_family:0.331427050384;GCM1,2:0.313962072075;HNF4A_NR2F1,2:0.305029791046;SOX17:0.298858468943;HOX{A4,D4}:0.293911659211;AR:0.268518775241;TBX4,5:0.264978672342;NR1H4:0.253607847984;LHX3,4:0.246499025243;NANOG{mouse}:0.2414884719;GFI1:0.230913458529;T:0.22248378772;LMO2:0.219037883844;GATA4:0.208891402412;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.196850671804;YY1:0.143727141891;STAT2,4,6:0.130809433038;RBPJ:0.126680925597;DBP:0.116374216223;NFE2L2:0.0727644552708;ALX4:0.0692627386634;RFX1:0.0654252553897;SOX{8,9,10}:0.0327045218693;MTE{core}:0.0302497426179;NFE2L1:0.0197109601946;PPARG:0.0169724350129;ZNF143:0.00933028103891;MYFfamily:-0.00158332455221;TOPORS:-0.0273932606597;NFIL3:-0.0316633272599;MYBL2:-0.0450925331406;HNF1A:-0.0726247067957;ONECUT1,2:-0.0833277033921;POU3F1..4:-0.105798320154;RUNX1..3:-0.14127349573;ZNF384:-0.168787970023;BACH2:-0.178629194117;EN1,2:-0.196408382312;SNAI1..3:-0.206740014224;MTF1:-0.220152365436;EP300:-0.253779266669;NFE2:-0.285293700043;FOSL2:-0.28615155447;TGIF1:-0.298945424738;PRDM1:-0.316520696673;NFKB1_REL_RELA:-0.317221850952;STAT5{A,B}:-0.320235874044;ZFP161:-0.32110833637;HLF:-0.329258732376;JUN:-0.335600148218;AIRE:-0.349375286723;EVI1:-0.351750420467;PAX2:-0.358463323589;FOS_FOS{B,L1}_JUN{B,D}:-0.361026247145;POU2F1..3:-0.400798363345;MAFB:-0.418583774135;NFY{A,B,C}:-0.443909800642;CUX2:-0.479806715463;PRRX1,2:-0.558529508783;PBX1:-0.582400859527;ETS1,2:-0.608329053729;NKX6-1,2:-0.613833468116;AHR_ARNT_ARNT2:-0.619316329602;CRX:-0.62823499031;BPTF:-0.635794068664;SPIB:-0.65359879463;NRF1:-0.665890474116;FOXP3:-0.678913299609;FOXO1,3,4:-0.696602222799;RFX2..5_RFXANK_RFXAP:-0.701357384044;HOX{A6,A7,B6,B7}:-0.713797074682;NANOG:-0.728611881049;IRF1,2:-0.735733687065;NFATC1..3:-0.742718135255;GATA6:-0.746351521564;HSF1,2:-0.74661034909;PAX3,7:-0.774439644527;SPI1:-0.777054907291;ARID5B:-0.77984649505;NKX3-2:-0.783766096498;IRF7:-0.786065307561;CEBPA,B_DDIT3:-0.790419871688;SOX2:-0.828025239584;STAT1,3:-0.832760780992;FOX{F1,F2,J1}:-0.835570227643;VSX1,2:-0.85401002916;ALX1:-0.855302587318;HIF1A:-0.886354120157;TFDP1:-0.887665892684;SREBF1,2:-0.892898641822;ATF4:-0.910735941276;PAX4:-0.914660882724;CREB1:-0.916596170921;PAX6:-0.92122899692;BREu{core}:-0.937055424679;ZEB1:-0.960196303735;NKX2-2,8:-0.961794127821;NFIX:-0.989989247801;ELK1,4_GABP{A,B1}:-1.00161912885;FOX{D1,D2}:-1.02367766121;TLX2:-1.02775593068;FOXP1:-1.05552642872;NKX3-1:-1.11538746336;ATF2:-1.11557147412;FOXD3:-1.14109650773;OCT4_SOX2{dimer}:-1.16916092424;ELF1,2,4:-1.18816893968;E2F1..5:-1.24119486259;ADNP_IRX_SIX_ZHX:-1.2769811533;POU1F1:-1.28986181333;POU5F1:-1.30377749777;TEF:-1.32115098971;MYB:-1.32388406004;HMGA1,2:-1.33161860918;DMAP1_NCOR{1,2}_SMARC:-1.33452380667;FOXA2:-1.37862075102;PAX8:-1.39765844268;ATF5_CREB3:-1.42027060316;PITX1..3:-1.49068232584;HOXA9_MEIS1:-1.51118191888;CDX1,2,4:-1.59052782801;CDC5L:-1.60929640768;IKZF2:-1.61987266909;PDX1:-1.75607577243;FOXQ1:-1.7728109007;HBP1_HMGB_SSRP1_UBTF:-1.88460401893;ZBTB16:-1.88621963947;FOX{I1,J2}:-1.89863382118;NKX2-1,4:-1.90873797092;FOXN1:-1.98628936386
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11571-120E5;search_select_hide=table117:FF:11571-120E5
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Pericytes, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12079
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stageNA
sexNA
ageNA
cell typepericyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005839
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12079 CAGE DRX008397 DRR009269
Accession ID Hg19

Library idBAMCTSS
CNhs12079 DRZ000694 DRZ002079
Accession ID Hg38

Library idBAMCTSS
CNhs12079 DRZ012044 DRZ013429
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.012
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.445
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.128
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0.128
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.398
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0185
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.388
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.155
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.128
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.737
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00491
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0693
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.114
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0412
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.307
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0409
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.248
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.103
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.593
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.227
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.128
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.43
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.876
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.588
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12079

Jaspar motifP-value
MA0002.20.759
MA0003.10.193
MA0004.10.839
MA0006.10.363
MA0007.10.214
MA0009.10.268
MA0014.10.542
MA0017.10.375
MA0018.20.0826
MA0019.10.0363
MA0024.10.00121
MA0025.10.42
MA0027.10.524
MA0028.10.0202
MA0029.10.43
MA0030.10.559
MA0031.10.0716
MA0035.20.78
MA0038.10.513
MA0039.20.796
MA0040.10.281
MA0041.10.211
MA0042.10.467
MA0043.10.00342
MA0046.10.259
MA0047.20.347
MA0048.10.628
MA0050.10.00362
MA0051.10.00322
MA0052.10.00135
MA0055.10.887
MA0057.10.595
MA0058.10.904
MA0059.10.61
MA0060.10.711
MA0061.10.862
MA0062.25.67473e-6
MA0065.20.205
MA0066.10.136
MA0067.10.062
MA0068.10.328
MA0069.10.186
MA0070.10.0563
MA0071.10.0364
MA0072.10.479
MA0073.10.869
MA0074.10.368
MA0076.10.00268
MA0077.10.257
MA0078.10.643
MA0079.20.316
MA0080.26.65974e-8
MA0081.10.015
MA0083.14.89071e-4
MA0084.10.942
MA0087.10.566
MA0088.10.614
MA0090.10.0307
MA0091.11.21064e-5
MA0092.10.851
MA0093.10.925
MA0099.20.0236
MA0100.10.104
MA0101.10.0845
MA0102.27.81094e-4
MA0103.10.915
MA0104.20.332
MA0105.10.963
MA0106.10.815
MA0107.10.207
MA0108.26.9081e-10
MA0111.10.285
MA0112.20.0118
MA0113.10.0345
MA0114.10.347
MA0115.10.606
MA0116.10.843
MA0117.10.125
MA0119.10.457
MA0122.10.575
MA0124.10.628
MA0125.10.911
MA0131.10.24
MA0135.10.0377
MA0136.13.40761e-12
MA0137.20.154
MA0138.20.16
MA0139.10.75
MA0140.10.342
MA0141.10.0472
MA0142.10.217
MA0143.10.786
MA0144.10.508
MA0145.10.27
MA0146.10.0126
MA0147.10.331
MA0148.10.303
MA0149.10.0948
MA0150.10.0684
MA0152.10.598
MA0153.10.229
MA0154.10.16
MA0155.10.0147
MA0156.17.29133e-11
MA0157.10.0826
MA0159.10.619
MA0160.10.542
MA0162.10.139
MA0163.10.226
MA0164.10.372
MA0258.10.0171
MA0259.10.553



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12079

Novel motifP-value
10.607
100.121
1000.994
1010.529
1020.894
1030.932
1040.222
1050.262
1060.219
1070.0828
1080.328
1090.123
110.148
1100.181
1110.809
1120.942
1130.0026
1140.543
1150.11
1160.149
1170.96
1180.926
1190.928
120.835
1200.11
1210.716
1220.0791
1233.91275e-4
1240.631
1250.158
1260.723
1270.934
1280.309
1290.583
130.893
1300.667
1310.948
1320.11
1330.814
1340.0858
1350.866
1360.661
1370.03
1380.591
1390.262
140.929
1400.745
1410.256
1420.67
1430.699
1440.379
1450.549
1460.331
1470.116
1480.397
1490.0683
150.26
1500.487
1510.687
1520.161
1530.303
1540.0762
1550.712
1560.706
1570.574
1580.998
1590.536
160.131
1600.0939
1610.749
1620.0883
1630.552
1640.381
1650.125
1660.701
1670.0752
1680.949
1690.0478
170.286
180.36
190.0529
20.124
200.642
210.816
220.0537
230.29
240.551
250.559
260.236
270.291
280.185
290.902
30.932
300.0663
310.36
327.74013e-11
330.882
340.0937
350.916
360.189
370.36
380.458
390.467
40.852
400.335
410.337
420.877
430.417
440.116
450.17
460.382
470.739
480.388
490.493
50.539
500.386
510.393
520.449
530.414
540.393
550.897
560.32
570.623
580.34
590.0102
60.395
600.442
610.92
620.63
630.541
640.397
650.0412
660.551
670.929
680.0519
690.0932
70.915
700.318
710.707
720.343
730.0989
740.14
750.899
760.291
770.0196
780.945
790.00178
80.229
800.615
810.675
820.107
830.5
840.271
850.0459
860.961
870.822
880.535
890.0807
90.0649
900.0169
910.365
920.764
930.734
940.729
950.389
960.688
970.481
980.298
990.0147



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12079


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0002575 (central nervous system pericyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000133 (human pericyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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