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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
|DRA_sample_Accession=CAGE@SAMD00005710
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000031,CL:0000034,CL:0000047,CL:0000048,CL:0000055,CL:0000133,CL:0000144,CL:0000211,CL:0000220,CL:0000221,CL:0000255,CL:0000393,CL:0000404,CL:0000540,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371
|accession_numbers=CAGE;DRX008376;DRR009248;DRZ000673;DRZ002058;DRZ012023;DRZ013408
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000348
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:37764128..37764258,-!p1@NEUROD2!2.66!451.62!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.47!294.33!NEUROD6;;chr1:244214577..244214593,+!p1@ZNF238!2.47!291.31!ZNF238;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.44!275.73!POU3F3;;chr14:29235961..29236008,+!p1@FOXG1!2.41!258.98!FOXG1;;chr1:151032922..151032951,+!p2@MLLT11!2.25!285.95!MLLT11;;chr14:29236269..29236285,+!p3@FOXG1!2.13!132.67!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.11!127.98!SOX11;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!2.08!118.10!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!2.03!105.70!SOX2;;chrX:25034067..25034088,-!p1@ARX!1.93!84.93!ARX;;chr4:81118647..81118666,+!p1@PRDM8!1.90!101.51!PRDM8;;chr2:200322229..200322251,-!p3@SATB2!1.89!76.72!SATB2;;chr4:57547454..57547469,-!p1@HOPX!1.87!72.87!HOPX;;chr14:29234581..29234601,+!p2@FOXG1!1.86!71.70!FOXG1;;chr2:5832493..5832507,+!p2@SOX11!1.86!71.36!SOX11;;chr1:151032860..151032918,+!p1@MLLT11!1.85!772.42!MLLT11;;chr2:162272785..162272836,+!p1@TBR1!1.85!70.19!TBR1;;chr20:20348740..20348757,+!p1@INSM1!1.84!67.84!INSM1;;chr19:13134772..13134822,+!p2@NFIX!1.79!88.28!NFIX;;chr8:65492756..65492768,+!p2@BHLHE22!1.78!58.97!BHLHE22;;chr7:96654133..96654150,-!p1@DLX5!1.74!54.11!DLX5;;chr2:16080659..16080685,+!p1@MYCN!1.69!47.91!MYCN;;chr2:60780607..60780624,-!p2@BCL11A!1.68!140.21!BCL11A;;chr9:126774018..126774055,+!p1@LHX2!1.66!44.73!LHX2;;chr1:151032957..151032968,+!p7@MLLT11!1.64!42.72!MLLT11;;chr19:38720294..38720348,-!p1@DPF1!1.63!51.93!DPF1;;chr7:100065686..100065701,-!p2@TSC22D4!1.63!42.05!TSC22D4;;chr3:181429741..181429767,+!p2@SOX2!1.63!41.88!SOX2;;chr2:2334997..2335053,-!p1@MYT1L!1.63!41.38!MYT1L;;chr2:172967621..172967637,-!p1@DLX2!1.62!105.70!DLX2;;chr2:162272889..162272915,+!p2@TBR1!1.58!37.19!TBR1;;chr19:47523058..47523114,+!p1@NPAS1!1.57!36.52!NPAS1;;chr1:244214611..244214624,+!p4@ZNF238!1.55!34.84!ZNF238;;chrX:82763292..82763317,+!p1@POU3F4!1.52!31.83!POU3F4;;chr2:172950227..172950249,+!p2@DLX1!1.49!29.82!DLX1;;chr2:239148671..239148686,-!p1@HES6!1.47!101.51!HES6;;chr12:103351444..103351461,+!p1@ASCL1!1.47!28.48!ASCL1;;chr2:200322723..200322739,-!p6@SATB2!1.47!28.31!SATB2;;chr6:21594206..21594221,+!p15@SOX4!1.43!26.13!SOX4;;chr4:113437332..113437337,-!p1@NEUROG2!1.42!25.29!NEUROG2;;chr6:19837592..19837621,+!p1@ID4!1.41!145.24!ID4;;chr19:13135582..13135600,+!p3@NFIX!1.41!24.79!NFIX;;chr9:126773880..126773895,+!p2@LHX2!1.41!24.62!LHX2;;chr14:29237009..29237049,+!p4@FOXG1!1.41!24.46!FOXG1;;chr15:57511609..57511651,+!p2@TCF12!1.40!40.20!TCF12;;chr5:88178983..88179012,-!p1@MEF2C!1.39!175.05!MEF2C;;chr2:172949484..172949522,+!p1@DLX1!1.39!23.28!DLX1;;chr2:2335109..2335134,-!p2@MYT1L!1.38!23.12!MYT1L;;chr14:29236301..29236317,+!p5@FOXG1!1.38!22.95!FOXG1;;chrX:84498989..84499003,+!p1@ZNF711!1.36!29.99!ZNF711;;chr2:166326200..166326216,+!p1@CSRNP3!1.35!31.16!CSRNP3;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.34!20.77!POU3F3;;chr1:23696348..23696363,-!p4@ZNF436!1.32!22.28!ZNF436;;chr12:24102576..24102623,-!p2@SOX5!1.32!20.10!SOX5;;chr14:33403881..33403924,+!p1@NPAS3!1.31!19.60!NPAS3;;chr2:175199675..175199688,+!p1@SP9!1.31!19.43!SP9;;chr18:53069419..53069450,-!p34@TCF4!1.30!18.93!TCF4;;chr12:111471526..111471541,+!p1@CUX2!1.30!18.76!CUX2;;chr9:14308004..14308041,-!p14@NFIB!1.30!18.76!NFIB;;chr6:21593973..21593988,+!p1@SOX4!1.29!642.59!SOX4;;chr5:92918768..92918783,+!p8@NR2F1!1.28!17.92!NR2F1;;chr11:63684602..63684664,-!p1@RCOR2!1.27!34.68!RCOR2;;chr18:52989001..52989030,-!p10@TCF4!1.27!19.26!TCF4;;chr20:657284..657307,-!p1@SCRT2!1.27!17.59!SCRT2;;chr6:99282438..99282457,+!p2@POU3F2!1.27!17.59!POU3F2;;chr10:118897911..118897974,-!p1@VAX1!1.26!17.25!VAX1;;chr6:99282475..99282501,+!p1@POU3F2!1.23!16.08!POU3F2;;chr9:20621927..20621996,-!p3@MLLT3!1.22!26.13!MLLT3;;chr5:92919100..92919135,+!p3@NR2F1!1.22!18.76!NR2F1;;chr2:200320768..200320800,-!p4@SATB2!1.22!15.41!SATB2;;chr2:200322259..200322280,-!p5@SATB2!1.22!15.41!SATB2;;chr18:52989031..52989079,-!p2@TCF4!1.21!35.35!TCF4;;chr6:21594252..21594285,+!p11@SOX4!1.21!16.92!SOX4;;chr2:162272716..162272753,+!p3@TBR1!1.21!15.24!TBR1;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.21!15.08!POU3F3;;chr4:57547820..57547829,-!p8@HOPX!1.21!15.08!HOPX;;chr16:51185172..51185197,-!p1@SALL1!1.20!14.91!SALL1;;chr14:73360799..73360817,-!p1@DPF3!1.19!49.75!DPF3;;chr2:182545234..182545252,-!p1@NEUROD1!1.19!14.41!NEUROD1;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.07!PAX6;;chr2:145277882..145277967,-!p3@ZEB2!1.17!23.79!ZEB2;;chr2:166428839..166428859,+!p2@CSRNP3!1.17!13.90!CSRNP3;;chr18:52988979..52988993,-!p18@TCF4!1.17!13.90!TCF4;;chr1:244214655..244214666,+!p7@ZNF238!1.17!13.90!ZNF238;;chr14:58798013..58798071,+!p2@ARID4A!1.17!13.74!ARID4A;;chr15:37392724..37392757,-!p1@MEIS2!1.16!61.65!MEIS2;;chr6:99282592..99282616,+!p3@POU3F2!1.16!13.57!POU3F2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.16!13.40!RUNX1T1;;chr4:57547751..57547764,-!p6@HOPX!1.16!13.40!HOPX;;chr9:124991204..124991246,-!p1@LHX6!1.16!13.40!LHX6;;chr17:7492684..7492778,-!p2@SOX15!1.15!27.81!SOX15;;chrX:84499081..84499115,+!p2@ZNF711!1.15!19.10!ZNF711;;chr2:145275982..145276003,-!p7@ZEB2!1.15!13.07!ZEB2;;chr2:60781201..60781258,-!p3@BCL11A!1.15!13.07!BCL11A;;chr4:57522598..57522664,-!p3@HOPX!1.15!13.07!HOPX;;chr1:41827095..41827155,+!p1@FOXO6!1.13!16.92!FOXO6;;chr18:53068911..53068935,-!p4@TCF4!1.13!14.24!TCF4;;chr9:126774058..126774081,+!p3@LHX2!1.13!12.40!LHX2;;chr5:124082322..124082364,-!p1@ZNF608!1.12!31.49!ZNF608;;chr15:80696703..80696754,+!p1@ARNT2!1.11!15.91!ARNT2;;chr8:65492915..65492932,+!p1@BHLHE22!1.11!11.89!BHLHE22;;chr2:200322654..200322707,-!p2@SATB2!1.10!17.09!SATB2;;chr15:37392094..37392116,-!p6@MEIS2!1.10!14.41!MEIS2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.10!11.56!PEG3;;chr5:124081979..124082021,-!p7@ZNF608!1.10!11.56!ZNF608;;chr18:56532100..56532130,+!p1@ZNF532!1.09!21.11!ZNF532;;chr18:52988952..52988965,-!p23@TCF4!1.09!11.39!TCF4;;chr18:53089453..53089482,-!p11@TCF4!1.09!11.39!TCF4;;chr6:21597765..21597779,+!p2@SOX4!1.08!88.78!SOX4;;chr1:244219392..244219409,+!p5@ZNF238!1.08!10.89!ZNF238;;chr5:92918919..92918942,+!p1@NR2F1!1.06!47.24!NR2F1;;chr2:25475120..25475176,-!p2@DNMT3A!1.06!14.07!DNMT3A;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.74!HEY1;;chr7:20826504..20826526,-!p1@SP8!1.04!9.88!SP8;;chr14:29236169..29236216,+!p6@FOXG1!1.04!9.88!FOXG1;;chr2:200325204..200325243,-!p7@SATB2!1.04!9.88!SATB2;;chr2:63277948..63277974,+!p1@OTX1!1.04!9.88!OTX1;;chr5:178368186..178368238,+!p1@ZNF454!1.03!17.42!ZNF454;;chr7:150945663..150945692,-!p5@SMARCD3!1.03!9.72!SMARCD3;;chr3:114173720..114173794,-!p6@ZBTB20!1.03!9.72!ZBTB20;;chr9:14314131..14314147,-!p2@NFIB!1.02!54.28!NFIB;;chr19:13134457..13134462,+!p5@NFIX!1.02!17.09!NFIX;;chr5:124082279..124082319,-!p3@ZNF608!1.02!11.56!ZNF608;;chr21:34398234..34398250,+!p1@OLIG2!1.02!9.38!OLIG2;;chr7:150974206..150974255,-!p1@SMARCD3!1.01!58.13!SMARCD3;;chr19:19976683..19976709,+!p1@ZNF253!1.01!41.71!ZNF253;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.22!ZBTB38;;chr5:150284420..150284443,-!p2@ZNF300!0.99!17.59!ZNF300;;chr1:244219038..244219054,+!p3@ZNF238!0.99!11.89!ZNF238;;chr2:60780580..60780590,-!p9@BCL11A!0.99!8.88!BCL11A;;chr8:93107696..93107716,-!p8@RUNX1T1!0.99!8.88!RUNX1T1;;chr2:200322711..200322722,-!p10@SATB2!0.99!8.71!SATB2;;chr17:70117153..70117174,+!p1@SOX9!0.98!91.13!SOX9;;chr18:53069389..53069416,-!p40@TCF4!0.98!8.54!TCF4;;chr19:13135731..13135787,+!p10@NFIX!0.97!8.38!NFIX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.97!8.38!ZSCAN1;;chr2:60780753..60780800,-!p1@BCL11A!0.96!41.38!BCL11A;;chrX:82763265..82763283,+!p2@POU3F4!0.96!8.21!POU3F4;;chr8:40755333..40755352,-!p1@ZMAT4!0.96!8.21!ZMAT4;;chr13:95364784..95364806,-!p1@SOX21!0.96!8.21!SOX21;;chr16:71918033..71918101,-!p1@ZNF821!0.95!30.32!ZNF821;;chr1:38512457..38512474,-!p1@POU3F1!0.95!8.71!POU3F1;;chr11:31832658..31832681,-!p1@PAX6!0.95!7.87!PAX6;;chr9:14082760..14082775,-!p6@NFIB!0.94!12.90!NFIB;;chr9:20622444..20622468,-!p2@MLLT3!0.93!25.13!MLLT3;;chr18:53257027..53257052,-!p3@TCF4!0.92!30.66!TCF4;;chr5:92919068..92919082,+!p5@NR2F1!0.92!8.88!NR2F1;;chr2:73144617..73144654,+!p1@EMX1!0.92!7.37!EMX1;;chr4:57522513..57522548,-!p4@HOPX!0.91!7.04!HOPX;;chr6:108487289..108487302,+!p1@NR2E1!0.91!7.04!NR2E1;;chr21:34442439..34442455,+!p1@OLIG1!0.91!7.04!OLIG1;;chr9:20621834..20621884,-!p5@MLLT3!0.91!7.04!MLLT3;;chr2:145277640..145277771,-!p1@ZEB2!0.90!98.50!ZEB2;;chr9:14314566..14314618,-!p1@NFIB!0.90!86.77!NFIB;;chr9:14083467..14083483,-!p4@NFIB!0.90!17.59!NFIB;;chr19:47922750..47922795,-!p1@MEIS3!0.90!11.73!MEIS3;;chr2:60780516..60780526,-!p11@BCL11A!0.90!6.87!BCL11A;;chr6:99282570..99282591,+!p4@POU3F2!0.90!6.87!POU3F2;;chr11:31839488..31839515,-!p3@PAX6!0.90!6.87!PAX6;;chr19:58220517..58220583,-!p1@ZNF154!0.89!22.45!ZNF154;;chr6:28411241..28411284,-!p1@ZSCAN23!0.89!22.45!ZSCAN23;;chr7:31380502..31380515,-!p3@NEUROD6!0.89!6.70!NEUROD6;;chr11:66188503..66188511,+!p1@NPAS4!0.89!6.70!NPAS4;;chrX:84499056..84499078,+!p3@ZNF711!0.89!6.70!ZNF711;;chrX:139587228..139587234,-!p1@SOX3!0.89!6.70!SOX3;;chr16:30406423..30406447,+!p4@ZNF48!0.89!6.70!ZNF48;;chr10:119302232..119302265,+!p1@EMX2!0.88!6.53!EMX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.88!6.53!PKNOX2;;chr2:2335070..2335098,-!p4@MYT1L!0.88!6.53!MYT1L;;chr1:2985760..2985774,+!p1@PRDM16!0.88!6.53!PRDM16;;chr1:23696308..23696339,-!p2@ZNF436!0.87!14.07!ZNF436;;chr9:14313893..14313908,-!p7@NFIB!0.87!9.38!NFIB;;chr9:109625401..109625458,+!p1@ZNF462!0.86!17.09!ZNF462;;chr18:53257001..53257015,-!p5@TCF4!0.86!11.22!TCF4;;chr7:31380440..31380451,-!p4@NEUROD6!0.86!6.20!NEUROD6;;chr2:145275947..145275981,-!p10@ZEB2!0.86!6.20!ZEB2;;chr2:166428861..166428883,+!p3@CSRNP3!0.86!6.20!CSRNP3;;chr2:60780546..60780555,-!p10@BCL11A!0.86!6.20!BCL11A;;chr16:79634624..79634642,-!p1@MAF!0.85!25.29!MAF;;chr13:72441315..72441454,-!p1@DACH1!0.85!12.56!DACH1;;chr1:158969752..158969780,+!p6@IFI16!0.85!11.06!IFI16;;chr3:33482052..33482116,-!p2@UBP1!0.85!9.72!UBP1;;chr2:16080635..16080650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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
|ffid_belonging_in_development=CL:0000133,CL:0000031,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg38.nobarcode.ctss.bed.gz
|id=FF:11574-120E8
|id=FF:11574-120E8
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000348
|is_a=EFO:0002091;;FF:0000348
|is_obsolete=
|library_id=CNhs12726
|library_id_phase_based=2:CNhs12726
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11574
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11574
|name=Neurons, donor2
|name=Neurons, donor2
|namespace=
|namespace=
Line 41: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12726,LSID960,release012,COMPLETED
|profile_hcage=CNhs12726,LSID960,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_box=120
|rna_catalog_number=SC1525
|rna_catalog_number=SC1525
Line 53: Line 76:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=120E8
|rna_tube_id=1.20E+10
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 68: Line 92:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.2743093922838e-233!GO:0043226;organelle;8.17267942242293e-193!GO:0043229;intracellular organelle;3.36763110612415e-192!GO:0043227;membrane-bound organelle;1.06602419105248e-191!GO:0043231;intracellular membrane-bound organelle;1.40896129304422e-191!GO:0005737;cytoplasm;5.80529448896917e-153!GO:0044422;organelle part;1.61948518101287e-127!GO:0044446;intracellular organelle part;6.54034541503034e-126!GO:0044444;cytoplasmic part;3.37761388084504e-106!GO:0032991;macromolecular complex;4.54549070493383e-99!GO:0005634;nucleus;1.53062853608246e-87!GO:0030529;ribonucleoprotein complex;3.76620371286666e-82!GO:0005515;protein binding;4.13760504351092e-79!GO:0043170;macromolecule metabolic process;2.53987494500506e-72!GO:0044238;primary metabolic process;1.05456780113273e-71!GO:0044237;cellular metabolic process;9.50060853469209e-71!GO:0003723;RNA binding;1.69210713107043e-67!GO:0044428;nuclear part;2.43081262109489e-67!GO:0016043;cellular component organization and biogenesis;2.77053254991716e-66!GO:0043233;organelle lumen;4.40839856280959e-58!GO:0031974;membrane-enclosed lumen;4.40839856280959e-58!GO:0043283;biopolymer metabolic process;4.30543849540259e-52!GO:0043234;protein complex;4.6148510951086e-50!GO:0005739;mitochondrion;4.79100499293417e-49!GO:0010467;gene expression;1.66331371513294e-48!GO:0006396;RNA processing;1.61531458039576e-47!GO:0005840;ribosome;5.3512020801459e-47!GO:0033036;macromolecule localization;1.14259089003672e-43!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.4252176906531e-43!GO:0031090;organelle membrane;2.84908330603976e-43!GO:0015031;protein transport;2.72889891726577e-42!GO:0016071;mRNA metabolic process;6.66804816616769e-41!GO:0003735;structural constituent of ribosome;2.18814977546265e-40!GO:0006996;organelle organization and biogenesis;5.07423154358976e-40!GO:0008380;RNA splicing;1.26042343789645e-39!GO:0008104;protein localization;1.54030764428963e-39!GO:0045184;establishment of protein localization;3.16241954671259e-39!GO:0031981;nuclear lumen;7.51976772427134e-39!GO:0006412;translation;1.89044938869764e-38!GO:0006397;mRNA processing;2.92624586102616e-37!GO:0044429;mitochondrial part;2.29498981946804e-35!GO:0046907;intracellular transport;1.03047282048165e-34!GO:0031967;organelle envelope;2.91254031501256e-34!GO:0031975;envelope;3.26188137082213e-34!GO:0033279;ribosomal subunit;5.65917933181703e-34!GO:0019538;protein metabolic process;1.07928698648325e-32!GO:0043228;non-membrane-bound organelle;2.59060001978058e-31!GO:0043232;intracellular non-membrane-bound organelle;2.59060001978058e-31!GO:0065003;macromolecular complex assembly;3.12627603413187e-30!GO:0003676;nucleic acid binding;3.68150654140019e-30!GO:0044267;cellular protein metabolic process;1.45934592234946e-29!GO:0044260;cellular macromolecule metabolic process;2.20608025343954e-29!GO:0005829;cytosol;3.33813118166509e-29!GO:0051649;establishment of cellular localization;5.02552468996e-29!GO:0051641;cellular localization;4.10387767893663e-28!GO:0006259;DNA metabolic process;9.17448176439143e-28!GO:0009059;macromolecule biosynthetic process;1.32858191329775e-27!GO:0022607;cellular component assembly;3.79947083588494e-27!GO:0005681;spliceosome;8.5103627922309e-27!GO:0006886;intracellular protein transport;2.1543978811875e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.49539506223677e-25!GO:0016070;RNA metabolic process;6.67517354450589e-25!GO:0009058;biosynthetic process;1.97643016391644e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.08002574514493e-24!GO:0005740;mitochondrial envelope;4.87125396208002e-24!GO:0044249;cellular biosynthetic process;7.72001642042352e-24!GO:0006119;oxidative phosphorylation;2.24871621662075e-23!GO:0019866;organelle inner membrane;3.39230726809736e-23!GO:0005654;nucleoplasm;3.56855543229337e-23!GO:0031966;mitochondrial membrane;4.4392386971513e-23!GO:0005743;mitochondrial inner membrane;4.46961973472732e-21!GO:0044445;cytosolic part;3.4679300391583e-20!GO:0016462;pyrophosphatase activity;1.44373743778273e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.53537480539204e-19!GO:0044455;mitochondrial membrane part;1.76530499677536e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.16919215926705e-19!GO:0017111;nucleoside-triphosphatase activity;3.06647908677475e-19!GO:0044451;nucleoplasm part;3.31335828012446e-19!GO:0000166;nucleotide binding;8.49550439036548e-19!GO:0015934;large ribosomal subunit;1.03959318566908e-17!GO:0005794;Golgi apparatus;2.07022984611363e-17!GO:0006512;ubiquitin cycle;2.80794080967694e-17!GO:0015935;small ribosomal subunit;3.85114207144807e-17!GO:0005746;mitochondrial respiratory chain;6.3114182094691e-17!GO:0016192;vesicle-mediated transport;7.39578507526137e-17!GO:0051276;chromosome organization and biogenesis;9.21190333418101e-17!GO:0007049;cell cycle;1.08078509568974e-16!GO:0012505;endomembrane system;1.11110762117457e-16!GO:0022618;protein-RNA complex assembly;1.78014408838431e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.6450662107061e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;4.28476881995191e-16!GO:0006457;protein folding;4.65996528694985e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.44708815770489e-16!GO:0003954;NADH dehydrogenase activity;6.44708815770489e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.44708815770489e-16!GO:0016874;ligase activity;9.97988456533398e-16!GO:0005694;chromosome;2.09796668142331e-15!GO:0006323;DNA packaging;2.80741921458212e-15!GO:0005730;nucleolus;6.14613955627253e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.63470047409392e-14!GO:0048770;pigment granule;2.18025500293117e-14!GO:0042470;melanosome;2.18025500293117e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.87576901496343e-14!GO:0000375;RNA splicing, via transesterification reactions;4.87576901496343e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.87576901496343e-14!GO:0044427;chromosomal part;5.14270319401156e-14!GO:0031980;mitochondrial lumen;5.92464306945634e-14!GO:0005759;mitochondrial matrix;5.92464306945634e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.64957409630688e-14!GO:0045271;respiratory chain complex I;6.64957409630688e-14!GO:0005747;mitochondrial respiratory chain complex I;6.64957409630688e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.49431914116286e-14!GO:0042773;ATP synthesis coupled electron transport;7.49431914116286e-14!GO:0008135;translation factor activity, nucleic acid binding;7.92416139392399e-14!GO:0005761;mitochondrial ribosome;1.64775772384545e-13!GO:0000313;organellar ribosome;1.64775772384545e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.1166589125512e-13!GO:0032553;ribonucleotide binding;2.95397458736909e-13!GO:0032555;purine ribonucleotide binding;2.95397458736909e-13!GO:0008134;transcription factor binding;4.03708125731093e-13!GO:0006974;response to DNA damage stimulus;7.96211578068364e-13!GO:0006605;protein targeting;1.08041117526349e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.32630122081396e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.35321977406378e-12!GO:0019941;modification-dependent protein catabolic process;1.72705244607345e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.72705244607345e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.8355454415853e-12!GO:0048193;Golgi vesicle transport;1.8355454415853e-12!GO:0043412;biopolymer modification;2.33213905784488e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.94832644406486e-12!GO:0044265;cellular macromolecule catabolic process;2.95168070731646e-12!GO:0044257;cellular protein catabolic process;3.5682006678049e-12!GO:0006333;chromatin assembly or disassembly;3.86476021917855e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.99744250539368e-12!GO:0022402;cell cycle process;7.48339204499572e-12!GO:0051082;unfolded protein binding;7.61990808289556e-12!GO:0015630;microtubule cytoskeleton;8.74239281500774e-12!GO:0017076;purine nucleotide binding;1.12048185025035e-11!GO:0065004;protein-DNA complex assembly;2.00564574257037e-11!GO:0000278;mitotic cell cycle;2.84683694402858e-11!GO:0031965;nuclear membrane;3.20887773241984e-11!GO:0043285;biopolymer catabolic process;3.61612698256528e-11!GO:0006464;protein modification process;4.69185196390489e-11!GO:0005635;nuclear envelope;5.3828584946023e-11!GO:0006281;DNA repair;7.09443007021953e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.22420094255352e-10!GO:0008565;protein transporter activity;1.4335062461319e-10!GO:0030163;protein catabolic process;1.4853575989998e-10!GO:0031988;membrane-bound vesicle;2.07304227832946e-10!GO:0044453;nuclear membrane part;2.15666773553938e-10!GO:0000785;chromatin;2.68166732134568e-10!GO:0050794;regulation of cellular process;3.76713526621884e-10!GO:0009057;macromolecule catabolic process;3.8438097623447e-10!GO:0043687;post-translational protein modification;4.02947500695674e-10!GO:0006913;nucleocytoplasmic transport;5.36597107540374e-10!GO:0016023;cytoplasmic membrane-bound vesicle;5.84083128289931e-10!GO:0003743;translation initiation factor activity;6.6381557136314e-10!GO:0016604;nuclear body;6.68014393967831e-10!GO:0042254;ribosome biogenesis and assembly;7.33970068685869e-10!GO:0051186;cofactor metabolic process;1.03392491491115e-09!GO:0006413;translational initiation;1.07253161402941e-09!GO:0031982;vesicle;1.42366852255212e-09!GO:0051169;nuclear transport;1.42705249174213e-09!GO:0003924;GTPase activity;1.53279689991745e-09!GO:0006446;regulation of translational initiation;1.66591809312869e-09!GO:0006334;nucleosome assembly;2.17761703805089e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.4338830500718e-09!GO:0005643;nuclear pore;3.00751276362889e-09!GO:0016607;nuclear speck;3.47763256701972e-09!GO:0050789;regulation of biological process;3.51226060612875e-09!GO:0006260;DNA replication;3.58284362597317e-09!GO:0031410;cytoplasmic vesicle;4.0208456897543e-09!GO:0031497;chromatin assembly;4.49731498411764e-09!GO:0005524;ATP binding;4.80619661223783e-09!GO:0006163;purine nucleotide metabolic process;5.00221385262108e-09!GO:0009259;ribonucleotide metabolic process;5.08415540517656e-09!GO:0008639;small protein conjugating enzyme activity;5.5161504452932e-09!GO:0032559;adenyl ribonucleotide binding;6.63443712743878e-09!GO:0019829;cation-transporting ATPase activity;7.11398471177338e-09!GO:0000087;M phase of mitotic cell cycle;7.11398471177338e-09!GO:0042623;ATPase activity, coupled;7.46913784155669e-09!GO:0009150;purine ribonucleotide metabolic process;7.98328485057463e-09!GO:0015986;ATP synthesis coupled proton transport;8.84544139713472e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.84544139713472e-09!GO:0016887;ATPase activity;9.35697312922449e-09!GO:0004842;ubiquitin-protein ligase activity;1.02692095153515e-08!GO:0006403;RNA localization;1.03284401906957e-08!GO:0007067;mitosis;1.06422931483373e-08!GO:0019787;small conjugating protein ligase activity;1.54757793378902e-08!GO:0050657;nucleic acid transport;1.67210217188806e-08!GO:0051236;establishment of RNA localization;1.67210217188806e-08!GO:0050658;RNA transport;1.67210217188806e-08!GO:0005783;endoplasmic reticulum;1.73760901295579e-08!GO:0044431;Golgi apparatus part;1.94996566328921e-08!GO:0044248;cellular catabolic process;2.07992074289428e-08!GO:0009141;nucleoside triphosphate metabolic process;2.12361178942249e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.22503850154418e-08!GO:0051301;cell division;2.23932425170113e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.2835079672145e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.2835079672145e-08!GO:0006164;purine nucleotide biosynthetic process;3.88728865880116e-08!GO:0015631;tubulin binding;4.47508834592294e-08!GO:0003712;transcription cofactor activity;5.05637916368868e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.23273742516422e-08!GO:0022403;cell cycle phase;5.57404908484579e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.21118532012196e-08!GO:0004386;helicase activity;6.45188515601383e-08!GO:0019222;regulation of metabolic process;7.38009868485676e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.44528251214025e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.44528251214025e-08!GO:0009260;ribonucleotide biosynthetic process;7.94867981068679e-08!GO:0006732;coenzyme metabolic process;8.68430597877518e-08!GO:0009060;aerobic respiration;8.81443501757577e-08!GO:0009719;response to endogenous stimulus;9.19322122547578e-08!GO:0016568;chromatin modification;1.00971322603602e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.09001654362325e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.09001654362325e-07!GO:0045045;secretory pathway;1.10008598066343e-07!GO:0046034;ATP metabolic process;1.15810023794163e-07!GO:0030554;adenyl nucleotide binding;1.81197804258265e-07!GO:0016881;acid-amino acid ligase activity;2.06732668387121e-07!GO:0005768;endosome;2.06732668387121e-07!GO:0007010;cytoskeleton organization and biogenesis;2.10364639960725e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.28680055600833e-07!GO:0045333;cellular respiration;2.95975700338953e-07!GO:0009055;electron carrier activity;3.07655462278034e-07!GO:0006754;ATP biosynthetic process;3.1277221729668e-07!GO:0006753;nucleoside phosphate metabolic process;3.1277221729668e-07!GO:0044432;endoplasmic reticulum part;3.89158834312589e-07!GO:0017038;protein import;4.10355300193185e-07!GO:0005525;GTP binding;4.30644116424542e-07!GO:0008026;ATP-dependent helicase activity;5.10547514560424e-07!GO:0065002;intracellular protein transport across a membrane;5.57796247087027e-07!GO:0032446;protein modification by small protein conjugation;5.59526482157231e-07!GO:0006461;protein complex assembly;5.91868285884702e-07!GO:0006364;rRNA processing;5.92132815127909e-07!GO:0031252;leading edge;6.15270727125745e-07!GO:0051726;regulation of cell cycle;6.53920259103542e-07!GO:0000074;regulation of progression through cell cycle;7.18339146052343e-07!GO:0006793;phosphorus metabolic process;7.35976489553918e-07!GO:0006796;phosphate metabolic process;7.35976489553918e-07!GO:0048523;negative regulation of cellular process;7.50988120148818e-07!GO:0006366;transcription from RNA polymerase II promoter;8.44986096719773e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.56391584642852e-07!GO:0046930;pore complex;9.36502375006754e-07!GO:0000245;spliceosome assembly;9.36502375006754e-07!GO:0051028;mRNA transport;9.5473231967286e-07!GO:0016072;rRNA metabolic process;1.01408024789722e-06!GO:0048475;coated membrane;1.10197463254589e-06!GO:0030117;membrane coat;1.10197463254589e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.35364692616e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.48561354196838e-06!GO:0005874;microtubule;1.49048299112586e-06!GO:0005793;ER-Golgi intermediate compartment;1.49320856612871e-06!GO:0016567;protein ubiquitination;1.76849035916032e-06!GO:0003697;single-stranded DNA binding;2.1905065461375e-06!GO:0045259;proton-transporting ATP synthase complex;2.53070737730242e-06!GO:0000139;Golgi membrane;2.59517597339474e-06!GO:0043566;structure-specific DNA binding;3.04042079889135e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.19726406373162e-06!GO:0000279;M phase;3.23674981882643e-06!GO:0006099;tricarboxylic acid cycle;3.76184572544856e-06!GO:0046356;acetyl-CoA catabolic process;3.76184572544856e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.93993850345965e-06!GO:0032561;guanyl ribonucleotide binding;6.13451974267935e-06!GO:0019001;guanyl nucleotide binding;6.13451974267935e-06!GO:0006399;tRNA metabolic process;7.18393409624039e-06!GO:0006350;transcription;8.0352572436822e-06!GO:0016310;phosphorylation;8.59045856683367e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.83157588153038e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.34604975773024e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.36710733293887e-06!GO:0004812;aminoacyl-tRNA ligase activity;9.36710733293887e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.36710733293887e-06!GO:0016363;nuclear matrix;9.61253828630884e-06!GO:0044440;endosomal part;1.03145120959536e-05!GO:0010008;endosome membrane;1.03145120959536e-05!GO:0006084;acetyl-CoA metabolic process;1.38193590252945e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.40673745804478e-05!GO:0003729;mRNA binding;1.51406948208838e-05!GO:0031323;regulation of cellular metabolic process;1.67816569407013e-05!GO:0008017;microtubule binding;1.78547595408068e-05!GO:0032940;secretion by cell;1.96782805520636e-05!GO:0030120;vesicle coat;1.96782805520636e-05!GO:0030662;coated vesicle membrane;1.96782805520636e-05!GO:0048519;negative regulation of biological process;2.0518316327668e-05!GO:0007017;microtubule-based process;2.14555908350021e-05!GO:0005789;endoplasmic reticulum membrane;2.17036332768241e-05!GO:0000902;cell morphogenesis;2.2232771879182e-05!GO:0032989;cellular structure morphogenesis;2.2232771879182e-05!GO:0043623;cellular protein complex assembly;2.26581782817627e-05!GO:0006613;cotranslational protein targeting to membrane;2.40704642649806e-05!GO:0043038;amino acid activation;2.6066022002741e-05!GO:0006418;tRNA aminoacylation for protein translation;2.6066022002741e-05!GO:0043039;tRNA aminoacylation;2.6066022002741e-05!GO:0003724;RNA helicase activity;2.65561313200258e-05!GO:0005905;coated pit;2.85185689150262e-05!GO:0051246;regulation of protein metabolic process;2.91577268380221e-05!GO:0009109;coenzyme catabolic process;3.17810246224182e-05!GO:0051187;cofactor catabolic process;3.23767632971709e-05!GO:0005762;mitochondrial large ribosomal subunit;3.59037843562744e-05!GO:0000315;organellar large ribosomal subunit;3.59037843562744e-05!GO:0007005;mitochondrion organization and biogenesis;4.23877065312433e-05!GO:0051188;cofactor biosynthetic process;4.79060020159123e-05!GO:0051427;hormone receptor binding;5.47165073447072e-05!GO:0006752;group transfer coenzyme metabolic process;5.78676840383868e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.95152423369676e-05!GO:0005770;late endosome;6.01659889880368e-05!GO:0009892;negative regulation of metabolic process;6.7341991402627e-05!GO:0005813;centrosome;7.26221542252959e-05!GO:0004298;threonine endopeptidase activity;7.26221542252959e-05!GO:0008092;cytoskeletal protein binding;7.66532332260649e-05!GO:0031324;negative regulation of cellular metabolic process;7.73570696826014e-05!GO:0007399;nervous system development;7.85923047556234e-05!GO:0016044;membrane organization and biogenesis;8.28948133285527e-05!GO:0051170;nuclear import;8.34908366033653e-05!GO:0016564;transcription repressor activity;8.83960737467676e-05!GO:0010468;regulation of gene expression;8.94976186423733e-05!GO:0012501;programmed cell death;9.51876918511094e-05!GO:0006606;protein import into nucleus;9.78991193041583e-05!GO:0051168;nuclear export;0.000106135824119193!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000107585921369303!GO:0035257;nuclear hormone receptor binding;0.000112885661410449!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000113019939064856!GO:0065007;biological regulation;0.000115915277649897!GO:0009056;catabolic process;0.000130120408043113!GO:0005798;Golgi-associated vesicle;0.000132833969709291!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000136335198640498!GO:0003713;transcription coactivator activity;0.000137831980638961!GO:0006915;apoptosis;0.000143397595956824!GO:0048471;perinuclear region of cytoplasm;0.000153122393405291!GO:0005773;vacuole;0.000153631191234429!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000159105123362975!GO:0005667;transcription factor complex;0.000161536994946915!GO:0005815;microtubule organizing center;0.000164941958515011!GO:0008654;phospholipid biosynthetic process;0.000189356082614621!GO:0043069;negative regulation of programmed cell death;0.000194633637847088!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000198886622633748!GO:0030027;lamellipodium;0.000209687751598072!GO:0000151;ubiquitin ligase complex;0.000214078072595159!GO:0032774;RNA biosynthetic process;0.000223639053139653!GO:0006916;anti-apoptosis;0.000232086870748838!GO:0050767;regulation of neurogenesis;0.00023938594154925!GO:0019899;enzyme binding;0.00023953933056702!GO:0003714;transcription corepressor activity;0.000241940699940898!GO:0007264;small GTPase mediated signal transduction;0.000260933721653799!GO:0006351;transcription, DNA-dependent;0.000260933721653799!GO:0043066;negative regulation of apoptosis;0.00026177662509383!GO:0006414;translational elongation;0.000264005836986035!GO:0003899;DNA-directed RNA polymerase activity;0.000267827088656769!GO:0016481;negative regulation of transcription;0.000277026025357073!GO:0000314;organellar small ribosomal subunit;0.000277026025357073!GO:0005763;mitochondrial small ribosomal subunit;0.000277026025357073!GO:0045786;negative regulation of progression through cell cycle;0.000285188252126759!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000293505832480424!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000301782243231658!GO:0043021;ribonucleoprotein binding;0.000314025239200348!GO:0009108;coenzyme biosynthetic process;0.000314025239200348!GO:0005769;early endosome;0.000315899367483422!GO:0005819;spindle;0.000325290116983241!GO:0016779;nucleotidyltransferase activity;0.000325974184097467!GO:0008219;cell death;0.000337175897323756!GO:0016265;death;0.000337175897323756!GO:0006261;DNA-dependent DNA replication;0.000337730606258321!GO:0000786;nucleosome;0.00034612767839247!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000380253416303017!GO:0008186;RNA-dependent ATPase activity;0.000402645004353338!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000460490283571144!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000513285543193377!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000526613583268759!GO:0009117;nucleotide metabolic process;0.000539317139779499!GO:0005875;microtubule associated complex;0.0005889812906286!GO:0016740;transferase activity;0.000640860786039786!GO:0031124;mRNA 3'-end processing;0.000643455801341743!GO:0030036;actin cytoskeleton organization and biogenesis;0.000677239798400799!GO:0008250;oligosaccharyl transferase complex;0.000724387709320655!GO:0006612;protein targeting to membrane;0.000788804609898857!GO:0051920;peroxiredoxin activity;0.000846774718995461!GO:0005657;replication fork;0.000901776733509777!GO:0030427;site of polarized growth;0.00103499851436706!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00107718024434716!GO:0030426;growth cone;0.00112440101513633!GO:0003682;chromatin binding;0.00113061655711887!GO:0004004;ATP-dependent RNA helicase activity;0.00114372089777988!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00117232257049535!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00117232257049535!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00117232257049535!GO:0000323;lytic vacuole;0.00120253194633551!GO:0005764;lysosome;0.00120253194633551!GO:0045449;regulation of transcription;0.00122841737655051!GO:0051087;chaperone binding;0.00130154099488238!GO:0022406;membrane docking;0.00140369546781518!GO:0048278;vesicle docking;0.00140369546781518!GO:0008361;regulation of cell size;0.00149853729865557!GO:0043681;protein import into mitochondrion;0.00159976428091003!GO:0015980;energy derivation by oxidation of organic compounds;0.00160781074855977!GO:0005869;dynactin complex;0.00164832105443239!GO:0048487;beta-tubulin binding;0.00167121781394878!GO:0000775;chromosome, pericentric region;0.00167121781394878!GO:0006383;transcription from RNA polymerase III promoter;0.00171317700763917!GO:0030118;clathrin coat;0.00172308644356356!GO:0004576;oligosaccharyl transferase activity;0.00183003779299008!GO:0001726;ruffle;0.00188441642067382!GO:0007051;spindle organization and biogenesis;0.00188441642067382!GO:0003746;translation elongation factor activity;0.00193223326547583!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00200535413024223!GO:0016049;cell growth;0.00201856239128703!GO:0051329;interphase of mitotic cell cycle;0.00203663909223889!GO:0003690;double-stranded DNA binding;0.00219291665685746!GO:0008287;protein serine/threonine phosphatase complex;0.0022755748160271!GO:0030135;coated vesicle;0.00246707715622481!GO:0006904;vesicle docking during exocytosis;0.00248206676394139!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00259156471225092!GO:0015399;primary active transmembrane transporter activity;0.00259156471225092!GO:0016197;endosome transport;0.00262459261351045!GO:0030867;rough endoplasmic reticulum membrane;0.00265861885006882!GO:0051128;regulation of cellular component organization and biogenesis;0.002720157873371!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00280369644119044!GO:0031072;heat shock protein binding;0.00287013692689535!GO:0045892;negative regulation of transcription, DNA-dependent;0.00307087744843357!GO:0005885;Arp2/3 protein complex;0.00307087744843357!GO:0031123;RNA 3'-end processing;0.00308845763033413!GO:0008180;signalosome;0.00310119012590846!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00331764611309847!GO:0007006;mitochondrial membrane organization and biogenesis;0.0033483721491242!GO:0000776;kinetochore;0.00338928704645425!GO:0005741;mitochondrial outer membrane;0.00339844019878588!GO:0016126;sterol biosynthetic process;0.00346257516079613!GO:0003684;damaged DNA binding;0.00349120289155122!GO:0050770;regulation of axonogenesis;0.00352610999748998!GO:0000059;protein import into nucleus, docking;0.00353022612738989!GO:0006891;intra-Golgi vesicle-mediated transport;0.00354356511368858!GO:0030133;transport vesicle;0.00355563032222973!GO:0051325;interphase;0.00359908118690397!GO:0005684;U2-dependent spliceosome;0.00366948481259496!GO:0016853;isomerase activity;0.00378785757767166!GO:0006405;RNA export from nucleus;0.00397604285328564!GO:0018196;peptidyl-asparagine modification;0.00400076921640826!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00400076921640826!GO:0048468;cell development;0.0040843408450191!GO:0006378;mRNA polyadenylation;0.0042567516746504!GO:0048500;signal recognition particle;0.00428108975564693!GO:0030137;COPI-coated vesicle;0.0043556953354489!GO:0031968;organelle outer membrane;0.0045776869485078!GO:0033116;ER-Golgi intermediate compartment membrane;0.00472229640289074!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00472229640289074!GO:0016859;cis-trans isomerase activity;0.00475336347558135!GO:0003711;transcription elongation regulator activity;0.0047715120941664!GO:0031902;late endosome membrane;0.00487714598184068!GO:0030880;RNA polymerase complex;0.00513553409603686!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00514196534721491!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00514196534721491!GO:0005637;nuclear inner membrane;0.00517301355254011!GO:0001558;regulation of cell growth;0.00518632815711661!GO:0006355;regulation of transcription, DNA-dependent;0.00520139781999921!GO:0006595;polyamine metabolic process;0.00523519813229403!GO:0046467;membrane lipid biosynthetic process;0.00544808857146082!GO:0030029;actin filament-based process;0.0055771673469551!GO:0006352;transcription initiation;0.00569709589812878!GO:0045454;cell redox homeostasis;0.00575048743268472!GO:0008139;nuclear localization sequence binding;0.00579740148179789!GO:0030521;androgen receptor signaling pathway;0.00583844957854839!GO:0008601;protein phosphatase type 2A regulator activity;0.00589756861773834!GO:0016563;transcription activator activity;0.00594002877733397!GO:0016585;chromatin remodeling complex;0.00594002877733397!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00596076534878988!GO:0046474;glycerophospholipid biosynthetic process;0.00608088941608988!GO:0031901;early endosome membrane;0.00668931543129065!GO:0005048;signal sequence binding;0.00670935289029381!GO:0003677;DNA binding;0.00684264806076525!GO:0019867;outer membrane;0.00712509344230377!GO:0016272;prefoldin complex;0.00729452659814055!GO:0006626;protein targeting to mitochondrion;0.00732422635420275!GO:0000159;protein phosphatase type 2A complex;0.00741901272913944!GO:0008312;7S RNA binding;0.00786729975482474!GO:0030176;integral to endoplasmic reticulum membrane;0.00800739132699163!GO:0000904;cellular morphogenesis during differentiation;0.00811155508601394!GO:0008094;DNA-dependent ATPase activity;0.00817822404143503!GO:0006695;cholesterol biosynthetic process;0.00818202422898945!GO:0016584;nucleosome positioning;0.00820351479452273!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00829972515110131!GO:0045047;protein targeting to ER;0.00829972515110131!GO:0048667;neuron morphogenesis during differentiation;0.00851256605330088!GO:0048812;neurite morphogenesis;0.00851256605330088!GO:0006818;hydrogen transport;0.00874431511335928!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00877349612755429!GO:0030030;cell projection organization and biogenesis;0.00900116930870215!GO:0048858;cell projection morphogenesis;0.00900116930870215!GO:0032990;cell part morphogenesis;0.00900116930870215!GO:0005774;vacuolar membrane;0.00903077427603264!GO:0004674;protein serine/threonine kinase activity;0.00915939616679658!GO:0006650;glycerophospholipid metabolic process;0.00916855155031314!GO:0030182;neuron differentiation;0.00923312613833059!GO:0008320;protein transmembrane transporter activity;0.00926394183642682!GO:0030516;regulation of axon extension;0.00948297931124608!GO:0015992;proton transport;0.00978091239097554!GO:0006402;mRNA catabolic process;0.00986107523400806!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00998864210543893!GO:0051252;regulation of RNA metabolic process;0.00998864210543893!GO:0006338;chromatin remodeling;0.0105533703196263!GO:0005832;chaperonin-containing T-complex;0.0108572383060135!GO:0007021;tubulin folding;0.0108629294237252!GO:0007019;microtubule depolymerization;0.0109446255388236!GO:0030663;COPI coated vesicle membrane;0.0110959414014121!GO:0030126;COPI vesicle coat;0.0110959414014121!GO:0006897;endocytosis;0.0111514650032536!GO:0010324;membrane invagination;0.0111514650032536!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0111837618263712!GO:0000428;DNA-directed RNA polymerase complex;0.0111837618263712!GO:0006892;post-Golgi vesicle-mediated transport;0.0117586304550378!GO:0000339;RNA cap binding;0.0118589845553418!GO:0008270;zinc ion binding;0.0119108864820915!GO:0016251;general RNA polymerase II transcription factor activity;0.0122590488366756!GO:0003678;DNA helicase activity;0.0126577807125915!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0126577807125915!GO:0005791;rough endoplasmic reticulum;0.0127271762517004!GO:0030384;phosphoinositide metabolic process;0.0129065228117776!GO:0005788;endoplasmic reticulum lumen;0.0133487564656752!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0134889817986143!GO:0000209;protein polyubiquitination;0.0135958181090606!GO:0007052;mitotic spindle organization and biogenesis;0.0136945932040829!GO:0019843;rRNA binding;0.0139093665707929!GO:0006839;mitochondrial transport;0.0144282273838646!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0147283300972818!GO:0016311;dephosphorylation;0.0148273049396339!GO:0030658;transport vesicle membrane;0.0150257057093789!GO:0043488;regulation of mRNA stability;0.0150452339951886!GO:0043487;regulation of RNA stability;0.0150452339951886!GO:0046489;phosphoinositide biosynthetic process;0.0151061826163173!GO:0009165;nucleotide biosynthetic process;0.0156396714661743!GO:0007409;axonogenesis;0.0162615053327203!GO:0048666;neuron development;0.0165526898965409!GO:0000792;heterochromatin;0.0166770193517423!GO:0031175;neurite development;0.0176854166927641!GO:0044452;nucleolar part;0.0177687030787993!GO:0006611;protein export from nucleus;0.0178430121660308!GO:0032508;DNA duplex unwinding;0.0179672359796313!GO:0032392;DNA geometric change;0.0179672359796313!GO:0035258;steroid hormone receptor binding;0.0182988592344424!GO:0006607;NLS-bearing substrate import into nucleus;0.0186139841798017!GO:0043022;ribosome binding;0.0186425517283393!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0190599847196607!GO:0055083;monovalent inorganic anion homeostasis;0.0190599847196607!GO:0055064;chloride ion homeostasis;0.0190599847196607!GO:0030644;cellular chloride ion homeostasis;0.0190599847196607!GO:0043414;biopolymer methylation;0.0192821136030042!GO:0022008;neurogenesis;0.0194168152228528!GO:0006376;mRNA splice site selection;0.0200368494491648!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0200368494491648!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0200368494491648!GO:0005092;GDP-dissociation inhibitor activity;0.0207228627960106!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0210812087402395!GO:0006401;RNA catabolic process;0.0210812087402395!GO:0043067;regulation of programmed cell death;0.0214639286375084!GO:0042981;regulation of apoptosis;0.0215495697645788!GO:0043631;RNA polyadenylation;0.0216764565689228!GO:0040029;regulation of gene expression, epigenetic;0.0221513128272972!GO:0005876;spindle microtubule;0.0223663639958863!GO:0000910;cytokinesis;0.0229168147898775!GO:0008022;protein C-terminus binding;0.0230003964212182!GO:0043492;ATPase activity, coupled to movement of substances;0.0245941559042013!GO:0032259;methylation;0.0246237460067038!GO:0030660;Golgi-associated vesicle membrane;0.0251129029615282!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0252706868158855!GO:0005669;transcription factor TFIID complex;0.0255836499126028!GO:0044437;vacuolar part;0.0256165243789832!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0260679571791791!GO:0048699;generation of neurons;0.026943463054973!GO:0006284;base-excision repair;0.0270186739318503!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0271174890895515!GO:0006643;membrane lipid metabolic process;0.0271954461911066!GO:0000049;tRNA binding;0.0276665461837876!GO:0043284;biopolymer biosynthetic process;0.028228986661729!GO:0005765;lysosomal membrane;0.0288222754171786!GO:0051539;4 iron, 4 sulfur cluster binding;0.028867025802959!GO:0019208;phosphatase regulator activity;0.0293623287469958!GO:0051287;NAD binding;0.0293623287469958!GO:0006672;ceramide metabolic process;0.0296133265262376!GO:0012506;vesicle membrane;0.0300451099571408!GO:0019887;protein kinase regulator activity;0.0300641955703451!GO:0042585;germinal vesicle;0.0305642646841698!GO:0007050;cell cycle arrest;0.0311279686655784!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0316771515215898!GO:0050811;GABA receptor binding;0.0316771515215898!GO:0043086;negative regulation of catalytic activity;0.0320732213850119!GO:0006289;nucleotide-excision repair;0.0321179207686557!GO:0022890;inorganic cation transmembrane transporter activity;0.032234781175005!GO:0031114;regulation of microtubule depolymerization;0.032234781175005!GO:0007026;negative regulation of microtubule depolymerization;0.032234781175005!GO:0032594;protein transport within lipid bilayer;0.032234781175005!GO:0032907;transforming growth factor-beta3 production;0.032234781175005!GO:0032596;protein transport into lipid raft;0.032234781175005!GO:0032910;regulation of transforming growth factor-beta3 production;0.032234781175005!GO:0032595;B cell receptor transport within lipid bilayer;0.032234781175005!GO:0033606;chemokine receptor transport within lipid bilayer;0.032234781175005!GO:0032600;chemokine receptor transport out of lipid raft;0.032234781175005!GO:0032599;protein transport out of lipid raft;0.032234781175005!GO:0032597;B cell receptor transport into lipid raft;0.032234781175005!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.032234781175005!GO:0031371;ubiquitin conjugating enzyme complex;0.0323940625397251!GO:0050769;positive regulation of neurogenesis;0.0327680157371564!GO:0050772;positive regulation of axonogenesis;0.0328467723374673!GO:0019207;kinase regulator activity;0.0346246442037339!GO:0004448;isocitrate dehydrogenase activity;0.0352201936180702!GO:0030518;steroid hormone receptor signaling pathway;0.0352228154444211!GO:0005938;cell cortex;0.0352228154444211!GO:0031301;integral to organelle membrane;0.0356924365354791!GO:0022884;macromolecule transmembrane transporter activity;0.0371474157667783!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0371474157667783!GO:0006302;double-strand break repair;0.0372048709249245!GO:0048489;synaptic vesicle transport;0.0372444187904854!GO:0017134;fibroblast growth factor binding;0.0373471284040692!GO:0005784;translocon complex;0.0373678752576917!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0375009657190263!GO:0010257;NADH dehydrogenase complex assembly;0.0375009657190263!GO:0033108;mitochondrial respiratory chain complex assembly;0.0375009657190263!GO:0031529;ruffle organization and biogenesis;0.0377709107501371!GO:0030132;clathrin coat of coated pit;0.0381395436958292!GO:0009311;oligosaccharide metabolic process;0.0386635557156116!GO:0007059;chromosome segregation;0.0388146527786367!GO:0008286;insulin receptor signaling pathway;0.0388146527786367!GO:0006509;membrane protein ectodomain proteolysis;0.0388238606212323!GO:0033619;membrane protein proteolysis;0.0388238606212323!GO:0046519;sphingoid metabolic process;0.0388238606212323!GO:0033673;negative regulation of kinase activity;0.0388238606212323!GO:0006469;negative regulation of protein kinase activity;0.0388238606212323!GO:0019902;phosphatase binding;0.0392547537893949!GO:0051789;response to protein stimulus;0.039481444235006!GO:0006986;response to unfolded protein;0.039481444235006!GO:0030134;ER to Golgi transport vesicle;0.0395107573456941!GO:0051052;regulation of DNA metabolic process;0.0395107573456941!GO:0006268;DNA unwinding during replication;0.0395107573456941!GO:0007004;telomere maintenance via telomerase;0.0398426203053813!GO:0044433;cytoplasmic vesicle part;0.0400674901098294!GO:0005871;kinesin complex;0.0401430681104573!GO:0003730;mRNA 3'-UTR binding;0.0403830118116028!GO:0030032;lamellipodium biogenesis;0.0411489369848434!GO:0016050;vesicle organization and biogenesis;0.0411622197795516!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0412638673495433!GO:0007033;vacuole organization and biogenesis;0.0416650705002474!GO:0030119;AP-type membrane coat adaptor complex;0.0416933273142851!GO:0005862;muscle thin filament tropomyosin;0.0419835597717116!GO:0008097;5S rRNA binding;0.0421269362445833!GO:0000228;nuclear chromosome;0.0425678015846673!GO:0008276;protein methyltransferase activity;0.0426962199055979!GO:0005521;lamin binding;0.0426962199055979!GO:0050681;androgen receptor binding;0.0438720809287318!GO:0042393;histone binding;0.0451091432062621!GO:0019894;kinesin binding;0.04567092841726!GO:0042026;protein refolding;0.0458014195130072!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0460193196859665!GO:0003727;single-stranded RNA binding;0.0462135387543147!GO:0000075;cell cycle checkpoint;0.0473221263453036!GO:0030127;COPII vesicle coat;0.0473573180371836!GO:0012507;ER to Golgi transport vesicle membrane;0.0473573180371836!GO:0001725;stress fiber;0.0474861263590256!GO:0032432;actin filament bundle;0.0474861263590256!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0477327672800129!GO:0015002;heme-copper terminal oxidase activity;0.0477327672800129!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0477327672800129!GO:0004129;cytochrome-c oxidase activity;0.0477327672800129!GO:0051540;metal cluster binding;0.0481326906308807!GO:0051536;iron-sulfur cluster binding;0.0481326906308807!GO:0019717;synaptosome;0.0483611351845497!GO:0030149;sphingolipid catabolic process;0.0489911288357281!GO:0065009;regulation of a molecular function;0.0489911288357281!GO:0030911;TPR domain binding;0.0493453413475085!GO:0030175;filopodium;0.0493453413475085!GO:0046426;negative regulation of JAK-STAT cascade;0.0494774733491508
|sample_id=11574
|sample_id=11574
|sample_note=
|sample_note=
Line 75: Line 100:
|sample_tissue=brain
|sample_tissue=brain
|top_motifs=SOX2:4.05348213867;NKX2-3_NKX2-5:3.39467223967;ADNP_IRX_SIX_ZHX:3.02984321104;T:3.01588172858;POU5F1:2.7423049541;PRRX1,2:2.66331302662;MZF1:2.51104411848;CDC5L:2.47834979718;JUN:2.34142461972;OCT4_SOX2{dimer}:2.32695619756;LEF1_TCF7_TCF7L1,2:2.29482557292;PAX8:2.28521349474;SOX{8,9,10}:2.2744151131;NANOG:2.1514813503;LHX3,4:2.1277349074;SOX17:2.10965035662;FOXM1:1.9769605092;STAT1,3:1.97046762218;TFDP1:1.94532882285;RFX1:1.92092197089;ZFP161:1.86299376352;NHLH1,2:1.86089782143;GFI1:1.85598016355;MED-1{core}:1.83806611076;CUX2:1.72290028678;MTE{core}:1.692212784;NKX6-1,2:1.60561213055;PATZ1:1.55810396099;ARID5B:1.47908639093;NRF1:1.4327579677;ONECUT1,2:1.40368234051;PRDM1:1.36292301559;ZNF143:1.35471397276;GTF2I:1.32753070572;MAZ:1.31988585564;ZIC1..3:1.31932218804;ATF2:1.24386388946;HOX{A4,D4}:1.24123732118;EGR1..3:1.23027783954;PAX5:1.21985999219;ZBTB6:1.21521388116;BREu{core}:1.21322116073;IKZF2:1.19951349092;PAX4:1.17507874221;ZNF384:1.17506370516;FOXD3:1.16755426124;RREB1:1.16138128545;PBX1:1.13548686548;REST:1.13416723052;YY1:1.13337152486;AHR_ARNT_ARNT2:1.1305123237;POU6F1:1.10715908542;DBP:1.10198023136;POU1F1:1.08492486829;POU3F1..4:1.07952131185;FOXP3:1.07383535652;NR1H4:1.06512477996;PAX1,9:1.04782415382;GATA4:1.04372355849;TFAP2B:1.03446225276;NFY{A,B,C}:0.998223187068;SMAD1..7,9:0.985196341634;RBPJ:0.979747228062;SOX5:0.955057990426;LMO2:0.925063995831;TGIF1:0.868231676177;PAX6:0.856388937165;GTF2A1,2:0.824842366754;GCM1,2:0.820270930199;VSX1,2:0.814611889237;KLF4:0.808830298222;GFI1B:0.800688507252;TEF:0.770079497801;MYFfamily:0.765890786834;ZNF423:0.746551913155;CRX:0.711773096121;TLX2:0.700124293114;ELK1,4_GABP{A,B1}:0.696406761609;CDX1,2,4:0.678720083879;HAND1,2:0.671197242229;HOXA9_MEIS1:0.636555553432;ATF4:0.616183265043;HBP1_HMGB_SSRP1_UBTF:0.613845408263;CREB1:0.609796577329;E2F1..5:0.606239539224;HIC1:0.591260806279;RFX2..5_RFXANK_RFXAP:0.588935783263;GZF1:0.551234275072;FOXL1:0.53643547888;POU2F1..3:0.486663640757;XCPE1{core}:0.466194838065;PPARG:0.456236895648;EVI1:0.444494154366;FOXP1:0.408679264615;RORA:0.352240007657;MYB:0.286069679496;NR6A1:0.278779592505;MAFB:0.228428179013;EP300:0.224751341592;FOXQ1:0.219933007327;PAX3,7:0.210432158756;MTF1:0.210368745501;TBP:0.20422448385;HSF1,2:0.198294324321;PDX1:0.164802316398;TLX1..3_NFIC{dimer}:0.155132210012;NKX3-2:0.15165917608;SP1:0.117270107261;EN1,2:0.113657975594;ATF5_CREB3:0.0875669490751;NR3C1:0.0617298818026;UFEwm:0.00296685047141;BPTF:-0.0294141892126;NKX3-1:-0.0480479293429;NFIX:-0.0508311451356;MEF2{A,B,C,D}:-0.0558844055171;MYBL2:-0.0600572807616;NFE2L2:-0.0744993779409;SPZ1:-0.0822401846915;SREBF1,2:-0.13702356205;NANOG{mouse}:-0.144360247086;NFIL3:-0.146673496932;DMAP1_NCOR{1,2}_SMARC:-0.148462535789;HMGA1,2:-0.165612749507;ALX1:-0.173131970638;AR:-0.186144472172;HNF1A:-0.191060049884;XBP1:-0.191689906409;TOPORS:-0.243784358851;FOXN1:-0.267384157206;ESRRA:-0.277964720303;STAT2,4,6:-0.281682625708;ZBTB16:-0.299515429021;GATA6:-0.307929977778;EBF1:-0.314458765761;SRF:-0.317093430141;NFE2L1:-0.318209634296;SPIB:-0.319512788318;NKX2-2,8:-0.327393443666;PAX2:-0.329520389846;bHLH_family:-0.337877459423;FOS_FOS{B,L1}_JUN{B,D}:-0.347782828156;STAT5{A,B}:-0.369610044075;RUNX1..3:-0.36975678427;HNF4A_NR2F1,2:-0.391078457975;AIRE:-0.426758346488;MYOD1:-0.431970706639;FOSL2:-0.441964934717;BACH2:-0.459722704993;IRF7:-0.484265233438;ZEB1:-0.491433985011;FOX{D1,D2}:-0.493594732871;HOX{A5,B5}:-0.494248576523;FOXA2:-0.500175844707;SPI1:-0.50306342661;TP53:-0.508159370688;SNAI1..3:-0.513281556537;FOX{F1,F2,J1}:-0.52117676291;NFE2:-0.537103033369;ATF6:-0.55720658706;TAL1_TCF{3,4,12}:-0.576418459892;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.580802958845;CEBPA,B_DDIT3:-0.61431969721;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.641989020825;IKZF1:-0.660629548467;TEAD1:-0.688061692785;NFKB1_REL_RELA:-0.688369117863;TFAP4:-0.690725068957;TBX4,5:-0.716797645766;PITX1..3:-0.719760614475;TFCP2:-0.738826961728;ALX4:-0.743797108651;ZNF238:-0.757007526043;IRF1,2:-0.776958461648;HLF:-0.794771745526;NKX2-1,4:-0.831003014801;NFATC1..3:-0.842047964211;ETS1,2:-0.876375815606;ESR1:-0.892526826625;FOX{I1,J2}:-0.899843095178;HMX1:-0.953480798596;ZNF148:-0.960641897036;GLI1..3:-0.982699609256;NR5A1,2:-1.01339417062;FOXO1,3,4:-1.01502424641;ELF1,2,4:-1.01665573519;HES1:-1.07137290814;TFAP2{A,C}:-1.42911511653;RXRA_VDR{dimer}:-1.45911386277;HOX{A6,A7,B6,B7}:-1.49292680829;HIF1A:-1.57759173285;RXR{A,B,G}:-1.64486797741
|top_motifs=SOX2:4.05348213867;NKX2-3_NKX2-5:3.39467223967;ADNP_IRX_SIX_ZHX:3.02984321104;T:3.01588172858;POU5F1:2.7423049541;PRRX1,2:2.66331302662;MZF1:2.51104411848;CDC5L:2.47834979718;JUN:2.34142461972;OCT4_SOX2{dimer}:2.32695619756;LEF1_TCF7_TCF7L1,2:2.29482557292;PAX8:2.28521349474;SOX{8,9,10}:2.2744151131;NANOG:2.1514813503;LHX3,4:2.1277349074;SOX17:2.10965035662;FOXM1:1.9769605092;STAT1,3:1.97046762218;TFDP1:1.94532882285;RFX1:1.92092197089;ZFP161:1.86299376352;NHLH1,2:1.86089782143;GFI1:1.85598016355;MED-1{core}:1.83806611076;CUX2:1.72290028678;MTE{core}:1.692212784;NKX6-1,2:1.60561213055;PATZ1:1.55810396099;ARID5B:1.47908639093;NRF1:1.4327579677;ONECUT1,2:1.40368234051;PRDM1:1.36292301559;ZNF143:1.35471397276;GTF2I:1.32753070572;MAZ:1.31988585564;ZIC1..3:1.31932218804;ATF2:1.24386388946;HOX{A4,D4}:1.24123732118;EGR1..3:1.23027783954;PAX5:1.21985999219;ZBTB6:1.21521388116;BREu{core}:1.21322116073;IKZF2:1.19951349092;PAX4:1.17507874221;ZNF384:1.17506370516;FOXD3:1.16755426124;RREB1:1.16138128545;PBX1:1.13548686548;REST:1.13416723052;YY1:1.13337152486;AHR_ARNT_ARNT2:1.1305123237;POU6F1:1.10715908542;DBP:1.10198023136;POU1F1:1.08492486829;POU3F1..4:1.07952131185;FOXP3:1.07383535652;NR1H4:1.06512477996;PAX1,9:1.04782415382;GATA4:1.04372355849;TFAP2B:1.03446225276;NFY{A,B,C}:0.998223187068;SMAD1..7,9:0.985196341634;RBPJ:0.979747228062;SOX5:0.955057990426;LMO2:0.925063995831;TGIF1:0.868231676177;PAX6:0.856388937165;GTF2A1,2:0.824842366754;GCM1,2:0.820270930199;VSX1,2:0.814611889237;KLF4:0.808830298222;GFI1B:0.800688507252;TEF:0.770079497801;MYFfamily:0.765890786834;ZNF423:0.746551913155;CRX:0.711773096121;TLX2:0.700124293114;ELK1,4_GABP{A,B1}:0.696406761609;CDX1,2,4:0.678720083879;HAND1,2:0.671197242229;HOXA9_MEIS1:0.636555553432;ATF4:0.616183265043;HBP1_HMGB_SSRP1_UBTF:0.613845408263;CREB1:0.609796577329;E2F1..5:0.606239539224;HIC1:0.591260806279;RFX2..5_RFXANK_RFXAP:0.588935783263;GZF1:0.551234275072;FOXL1:0.53643547888;POU2F1..3:0.486663640757;XCPE1{core}:0.466194838065;PPARG:0.456236895648;EVI1:0.444494154366;FOXP1:0.408679264615;RORA:0.352240007657;MYB:0.286069679496;NR6A1:0.278779592505;MAFB:0.228428179013;EP300:0.224751341592;FOXQ1:0.219933007327;PAX3,7:0.210432158756;MTF1:0.210368745501;TBP:0.20422448385;HSF1,2:0.198294324321;PDX1:0.164802316398;TLX1..3_NFIC{dimer}:0.155132210012;NKX3-2:0.15165917608;SP1:0.117270107261;EN1,2:0.113657975594;ATF5_CREB3:0.0875669490751;NR3C1:0.0617298818026;UFEwm:0.00296685047141;BPTF:-0.0294141892126;NKX3-1:-0.0480479293429;NFIX:-0.0508311451356;MEF2{A,B,C,D}:-0.0558844055171;MYBL2:-0.0600572807616;NFE2L2:-0.0744993779409;SPZ1:-0.0822401846915;SREBF1,2:-0.13702356205;NANOG{mouse}:-0.144360247086;NFIL3:-0.146673496932;DMAP1_NCOR{1,2}_SMARC:-0.148462535789;HMGA1,2:-0.165612749507;ALX1:-0.173131970638;AR:-0.186144472172;HNF1A:-0.191060049884;XBP1:-0.191689906409;TOPORS:-0.243784358851;FOXN1:-0.267384157206;ESRRA:-0.277964720303;STAT2,4,6:-0.281682625708;ZBTB16:-0.299515429021;GATA6:-0.307929977778;EBF1:-0.314458765761;SRF:-0.317093430141;NFE2L1:-0.318209634296;SPIB:-0.319512788318;NKX2-2,8:-0.327393443666;PAX2:-0.329520389846;bHLH_family:-0.337877459423;FOS_FOS{B,L1}_JUN{B,D}:-0.347782828156;STAT5{A,B}:-0.369610044075;RUNX1..3:-0.36975678427;HNF4A_NR2F1,2:-0.391078457975;AIRE:-0.426758346488;MYOD1:-0.431970706639;FOSL2:-0.441964934717;BACH2:-0.459722704993;IRF7:-0.484265233438;ZEB1:-0.491433985011;FOX{D1,D2}:-0.493594732871;HOX{A5,B5}:-0.494248576523;FOXA2:-0.500175844707;SPI1:-0.50306342661;TP53:-0.508159370688;SNAI1..3:-0.513281556537;FOX{F1,F2,J1}:-0.52117676291;NFE2:-0.537103033369;ATF6:-0.55720658706;TAL1_TCF{3,4,12}:-0.576418459892;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.580802958845;CEBPA,B_DDIT3:-0.61431969721;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.641989020825;IKZF1:-0.660629548467;TEAD1:-0.688061692785;NFKB1_REL_RELA:-0.688369117863;TFAP4:-0.690725068957;TBX4,5:-0.716797645766;PITX1..3:-0.719760614475;TFCP2:-0.738826961728;ALX4:-0.743797108651;ZNF238:-0.757007526043;IRF1,2:-0.776958461648;HLF:-0.794771745526;NKX2-1,4:-0.831003014801;NFATC1..3:-0.842047964211;ETS1,2:-0.876375815606;ESR1:-0.892526826625;FOX{I1,J2}:-0.899843095178;HMX1:-0.953480798596;ZNF148:-0.960641897036;GLI1..3:-0.982699609256;NR5A1,2:-1.01339417062;FOXO1,3,4:-1.01502424641;ELF1,2,4:-1.01665573519;HES1:-1.07137290814;TFAP2{A,C}:-1.42911511653;RXRA_VDR{dimer}:-1.45911386277;HOX{A6,A7,B6,B7}:-1.49292680829;HIF1A:-1.57759173285;RXR{A,B,G}:-1.64486797741
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11574-120E8;search_select_hide=table117:FF:11574-120E8
}}
}}

Latest revision as of 18:10, 4 June 2020

Name:Neurons, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12726
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stageNA
sexNA
ageNA
cell typeneuron
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3153
catalog numberSC1525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005710
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12726 CAGE DRX008376 DRR009248
Accession ID Hg19

Library idBAMCTSS
CNhs12726 DRZ000673 DRZ002058
Accession ID Hg38

Library idBAMCTSS
CNhs12726 DRZ012023 DRZ013408
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.369
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.106
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.187
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.0673
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0283
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.0673
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.011
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.316
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0507
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain1.099
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0562
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.299
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.125
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0016
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0673
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0673
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.012
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.12
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.365
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.177
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0673
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.125
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0673
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12726

Jaspar motifP-value
MA0002.25.908e-5
MA0003.10.162
MA0004.10.522
MA0006.10.415
MA0007.10.164
MA0009.10.197
MA0014.10.717
MA0017.10.00251
MA0018.20.00423
MA0019.10.882
MA0024.10.00413
MA0025.10.509
MA0027.10.138
MA0028.10.945
MA0029.10.0619
MA0030.10.594
MA0031.10.0882
MA0035.20.0542
MA0038.11.68336e-5
MA0039.20.213
MA0040.10.716
MA0041.10.547
MA0042.10.712
MA0043.10.254
MA0046.10.524
MA0047.20.00491
MA0048.10.659
MA0050.13.71735e-7
MA0051.10.0074
MA0052.10.385
MA0055.10.247
MA0057.10.266
MA0058.10.432
MA0059.10.216
MA0060.15.67641e-7
MA0061.10.027
MA0062.20.574
MA0065.24.92644e-4
MA0066.10.0534
MA0067.10.664
MA0068.10.00178
MA0069.10.399
MA0070.10.0122
MA0071.10.07
MA0072.10.748
MA0073.10.453
MA0074.10.208
MA0076.10.361
MA0077.10.0281
MA0078.10.344
MA0079.20.618
MA0080.21.30342e-9
MA0081.10.0676
MA0083.10.994
MA0084.10.117
MA0087.10.677
MA0088.10.381
MA0090.10.105
MA0091.10.47
MA0092.10.873
MA0093.10.58
MA0099.21.23665e-9
MA0100.10.297
MA0101.10.0157
MA0102.20.0208
MA0103.10.096
MA0104.20.805
MA0105.10.0151
MA0106.10.0546
MA0107.10.0231
MA0108.20.023
MA0111.10.532
MA0112.21.28981e-4
MA0113.10.081
MA0114.10.0124
MA0115.10.16
MA0116.10.0242
MA0117.10.775
MA0119.10.103
MA0122.10.399
MA0124.10.542
MA0125.10.0201
MA0131.10.707
MA0135.10.00146
MA0136.19.67278e-7
MA0137.20.424
MA0138.20.252
MA0139.10.353
MA0140.10.00454
MA0141.10.00634
MA0142.10.0193
MA0143.10.0376
MA0144.10.209
MA0145.10.162
MA0146.10.00759
MA0147.10.631
MA0148.10.0167
MA0149.10.00384
MA0150.12.50571e-4
MA0152.10.336
MA0153.10.537
MA0154.10.045
MA0155.10.663
MA0156.14.10774e-4
MA0157.10.0277
MA0159.10.00206
MA0160.10.0212
MA0162.10.271
MA0163.14.3358e-5
MA0164.10.568
MA0258.10.00754
MA0259.10.987



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12726

Novel motifP-value
10.0642
100.0722
1000.58
1010.638
1020.973
1030.249
1040.206
1050.297
1060.014
1070.0806
1080.784
1090.0033
110.0314
1100.214
1110.0859
1120.0938
1130.938
1140.00996
1150.814
1160.368
1170.0297
1180.191
1190.105
120.802
1200.816
1210.432
1220.947
1230.767
1240.195
1250.809
1260.00845
1270.267
1280.156
1290.434
130.00813
1300.831
1310.9
1320.956
1330.221
1340.493
1350.615
1360.0117
1370.557
1380.51
1390.0361
140.803
1400.257
1410.487
1420.978
1430.0155
1440.43
1450.512
1460.814
1470.732
1480.0221
1490.125
150.0914
1500.254
1510.363
1520.0288
1530.87
1540.837
1550.255
1560.649
1570.662
1580.566
1590.824
160.0589
1600.131
1610.0976
1620.749
1630.22
1640.0093
1650.813
1660.674
1670.258
1680.298
1690.00589
170.0616
180.344
190.131
20.558
200.5
210.11
220.123
230.0965
240.18
250.578
260.0144
270.576
280.782
290.0482
30.0378
300.967
310.884
320.0274
330.348
340.69
350.631
360.257
370.0236
380.225
390.203
40.606
400.112
410.566
420.207
430.127
440.0948
450.667
460.172
470.138
480.0937
490.14
50.233
500.325
510.423
520.371
530.614
540.273
550.187
560.321
570.255
580.164
590.0352
60.829
600.0522
610.0255
620.121
630.117
640.45
650.17
660.942
670.77
680.459
690.367
70.13
700.0535
710.015
720.396
730.0156
740.715
750.0346
760.367
770.11
780.00482
790.162
80.0963
800.722
810.549
820.175
830.458
840.94
850.042
860.24
870.0514
880.546
890.358
90.379
900.426
910.366
920.129
930.645
940.132
950.0168
960.816
970.816
980.174
990.669



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12726


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000348 (human neuron samples)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

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