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{{f5samples
{{f5samples
|id=FF:11590-120G6
|DRA_sample_Accession=CAGE@SAMD00005923
|name=Alveolar Epithelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005923
|sample_id=11590
|accession_numbers=CAGE;DRX008105;DRR008977;DRZ000402;DRZ001787;DRZ011752;DRZ013137
|rna_tube_id=120G6
|accession_numbers_RNASeq=sRNA-Seq;DRX036999;DRR041365;DRZ007007
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|rna_position=G6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:4978
|rna_catalog_number=SC3205
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.8
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=epithelial cell of lung, small airway
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.3
|sample_note=
|profile_hcage=CNhs12084,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10002,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000082,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000322,CL:0000548,CL:0002076,CL:0002202,CL:0002321,CL:0002368,CL:0002371,CL:0002632
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000060,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000115,UBERON:0000117,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000487,UBERON:0000490,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001558,UBERON:0002048,UBERON:0002050,UBERON:0002169,UBERON:0002224,UBERON:0002299,UBERON:0002532,UBERON:0003104,UBERON:0003215,UBERON:0003258,UBERON:0003914,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004802,UBERON:0004807,UBERON:0004821,UBERON:0004894,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0006524,UBERON:0006914,UBERON:0007026,UBERON:0007196,UBERON:0007499,UBERON:0008874,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153
|comment=Previously: Alveolar Epithelial Cells, donor2
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.32!207.25!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!2.14!279.12!C11orf9;;chr1:201979703..201979721,+!p2@ELF3!2.13!134.68!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.08!117.93!ELF3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.38!IRX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.15!FOXQ1;;chr20:22564895..22564910,-!p1@FOXA2!1.67!46.05!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!1.56!35.59!FOXA2;;chr6:34204921..34204939,+!p3@HMGA1!1.51!905.75!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.61!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.46!39.08!GATA6;;chr20:42295745..42295765,+!p1@MYBL2!1.43!406.12!MYBL2;;chr14:38064429..38064486,-!p1@FOXA1!1.39!23.73!FOXA1;;chr19:17356189..17356221,-!p2@NR2F6!1.38!36.98!NR2F6;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.82!IRF6;;chr18:19749541..19749557,+!p1@GATA6!1.36!67.69!GATA6;;chr12:7079780..7079791,-!p2@PHB2!1.27!91.41!PHB2;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.75!IRX2;;chr5:3595977..3595999,+!p1@IRX1!1.25!16.75!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!138.86!PPP1R13L;;chr1:935467..935484,-!p1@HES4!1.23!70.48!HES4;;chr3:52001448..52001478,-!p2@PCBP4!1.21!209.34!PCBP4;;chr1:23885981..23886002,-!p1@ID3!1.19!2477.19!ID3;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1595.17!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!1.17!13.96!ZFP42;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.96!MAFK;;chr14:36989358..36989378,-!p3@NKX2-1!1.17!13.96!NKX2-1;;chr14:36989427..36989442,-!p1@NKX2-1!1.17!13.96!NKX2-1;;chr9:35732647..35732678,+!p2@CREB3!1.16!73.97!CREB3;;chr1:6479968..6479986,-!p1@HES2!1.15!13.26!HES2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.46!ID4;;chr19:45579725..45579743,-!p1@ZNF296!1.14!57.22!ZNF296;;chr20:30193083..30193098,+!p1@ID1!1.13!994.37!ID1;;chr20:32274179..32274213,-!p1@E2F1!1.12!80.25!E2F1;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.86!GRHL2;;chr18:19749504..19749515,+!p5@GATA6!1.11!11.86!GATA6;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.15!ETV4;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.61!NFKBIA;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.24!GATA6;;chr17:46675558..46675577,-!p2@HOXB6!1.09!11.16!HOXB6;;chr19:49865646..49865718,-!p1@TEAD2!1.07!92.81!TEAD2;;chr1:8926441..8926473,-!p10@ENO1!1.07!16.05!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.66!DRAP1;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.47!TCF21;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr16:29818160..29818188,+!p6@MAZ!1.04!46.75!MAZ;;chr20:42295713..42295738,+!p2@MYBL2!1.03!57.92!MYBL2;;chr6:44233252..44233296,-!p1@NFKBIE!1.01!92.81!NFKBIE;;chr3:52001396..52001425,-!p4@PCBP4!1.01!16.75!PCBP4;;chr17:3571863..3571881,-!p1@TAX1BP3!1.00!655.24!TAX1BP3;;chr1:26496382..26496457,+!p1@ZNF593!1.00!554.75!ZNF593;;chr3:52001426..52001447,-!p3@PCBP4!1.00!25.82!PCBP4;;chr22:19748231..19748317,+!p1@TBX1!1.00!9.07!TBX1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.07!HNF1B;;chr11:34642612..34642646,+!p1@EHF!1.00!9.07!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.00!9.07!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!1.00!9.07!OVOL2;;chr20:22565370..22565388,-!p2@FOXA2!1.00!9.07!FOXA2;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.35!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.97!23.03!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.37!SOX15;;chr16:8962853..8962878,-!p1@CARHSP1!0.96!487.07!CARHSP1;;chr6:41514078..41514158,+!p1@FOXP4!0.96!76.06!FOXP4;;chr19:926055..926068,+!p2@ARID3A!0.93!16.75!ARID3A;;chr19:17356436..17356481,-!p3@NR2F6!0.93!13.26!NR2F6;;chr2:85981222..85981259,+!p2@ATOH8!0.93!12.56!ATOH8;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.86!HMGA2;;chr1:23886132..23886156,-!p2@ID3!0.92!8.37!ID3;;chr1:8938709..8938720,-!p3@ENO1!0.91!361.46!ENO1;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.47!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.91!9.77!ENO1;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.98!HOXB5;;chr5:3595934..3595957,+!p2@IRX1!0.90!6.98!IRX1;;chr7:97840743..97840786,+!p1@BHLHA15!0.90!6.98!BHLHA15;;chr6:41514305..41514359,+!p2@FOXP4!0.89!59.31!FOXP4;;chr19:1592714..1592762,-!p1@MBD3!0.89!53.73!MBD3;;chr10:104155480..104155534,+!p2@NFKB2!0.88!45.36!NFKB2;;chr1:8483878..8483907,-!p4@RERE!0.88!26.52!RERE;;chr12:54785074..54785122,-!p2@ZNF385A!0.88!10.47!ZNF385A;;chr19:6424783..6424802,-!p2@KHSRP!0.87!136.77!KHSRP;;chr1:26496459..26496470,+!p2@ZNF593!0.87!12.56!ZNF593;;chrX:48900782..48900793,-!p3@TFE3!0.87!12.56!TFE3;;chr17:38465413..38465438,+!p5@RARA!0.87!10.47!RARA;;chr19:56632592..56632670,-!p1@ZNF787!0.86!149.33!ZNF787;;chr19:46367576..46367592,+!p1@FOXA3!0.86!6.28!FOXA3;;chr19:46800289..46800327,+!p2@HIF3A!0.86!6.28!HIF3A;;chr14:36988882..36988895,-!p13@NKX2-1!0.86!6.28!NKX2-1;;chr8:102504690..102504704,+!p3@GRHL2!0.86!6.28!GRHL2;;chr10:135122380..135122458,+!p1@ZNF511!0.85!195.38!ZNF511;;chr14:75894714..75894733,+!p1@JDP2!0.85!183.52!JDP2;;chr16:30537839..30537929,-!p1@ZNF768!0.85!40.47!ZNF768;;chr19:926001..926046,+!p1@ARID3A!0.85!22.33!ARID3A;;chr11:47270436..47270464,+!p2@NR1H3!0.85!13.26!NR1H3;;chr12:2986206..2986258,-!p2@FOXM1!0.84!37.68!FOXM1;;chr1:8938736..8938756,-!p1@ENO1!0.83!6731.69!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.83!34.19!DRAP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.83!13.96!CARHSP1;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.77!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.37!IRX3;;chr9:35732514..35732530,+!p5@CREB3!0.83!8.37!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.82!24.42!TCF3;;chr12:80084737..80084763,-!p3@PAWR!0.82!22.33!PAWR;;chr1:8934931..8934947,-!p4@ENO1!0.82!19.54!ENO1;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.37!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!0.82!5.58!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.82!5.58!SP6;;chr2:122042770..122042785,-!p1@TFCP2L1!0.82!5.58!TFCP2L1;;chr12:3068634..3068656,+!p5@TEAD4!0.82!5.58!TEAD4;;chr10:104154246..104154347,+!p3@NFKB2!0.81!36.29!NFKB2;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.63!ZBTB7B;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.82!FOSL1;;chr10:104155455..104155479,+!p1@NFKB2!0.80!85.13!NFKB2;;chr19:17356697..17356762,-!p1@NR2F6!0.80!78.15!NR2F6;;chr17:61920280..61920343,-!p2@SMARCD2!0.80!55.82!SMARCD2;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.19!TEAD4;;chr17:46622205..46622218,-!p3@HOXB2!0.80!6.28!HOXB2;;chr19:1652575..1652621,-!p1@TCF3!0.79!217.71!TCF3;;chr19:45504688..45504782,+!p1@RELB!0.79!34.19!RELB;;chr2:70314240..70314256,+!p4@PCBP1!0.79!11.16!PCBP1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!9.07!ELK4;;chr12:7079807..7079848,-!p1@PHB2!0.78!979.02!PHB2;;chr11:64073022..64073056,+!p1@ESRRA!0.78!65.59!ESRRA;;chr15:74833584..74833626,+!p1@ARID3B!0.78!12.56!ARID3B;;chr6:34204642..34204664,+!p2@HMGA1!0.77!725.02!HMGA1;;chr16:29817789..29817838,+!p2@MAZ!0.77!73.27!MAZ;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.28!FOXF1;;chr10:135122868..135122893,+!p3@ZNF511!0.77!4.88!ZNF511;;chr14:36989379..36989390,-!p8@NKX2-1!0.77!4.88!NKX2-1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.77!4.88!ZSCAN1;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.88!ATOH8;;chr4:149363494..149363543,-!p1@NR3C2!0.77!4.88!NR3C2;;chr17:17740287..17740307,-!p1@SREBF1!0.76!137.47!SREBF1;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.61!ZNF444;;chr8:145669791..145669834,-!p1@TONSL!0.76!14.65!TONSL;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.86!SREBF2;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.28!ZNF488;;chr11:615942..615957,-!p1@IRF7!0.75!48.15!IRF7;;chr20:32274150..32274166,-!p2@E2F1!0.75!9.07!E2F1;;chr9:35732592..35732640,+!p1@CREB3!0.74!65.59!CREB3;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.74!50.24!GLIS2;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.35!TBX2;;chr19:3366625..3366629,+!p4@NFIC!0.74!6.98!NFIC;;chr12:125002739..125002756,-!p6@NCOR2!0.74!6.98!NCOR2;;chr14:75988771..75988826,+!p1@BATF!0.74!6.28!BATF;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.73!120.72!MEF2B;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.05!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.33!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!9.07!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr19:19303731..19303783,+!p1@RFXANK!0.72!112.35!RFXANK;;chr17:38498402..38498445,+!p3@RARA!0.72!16.75!RARA;;chr2:169312600..169312606,+!p2@CERS6!0.72!6.98!CERS6;;chr11:62369806..62369837,-!p8@MTA2!0.72!5.58!MTA2;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr20:48807351..48807384,+!p1@CEBPB!0.71!484.27!CEBPB;;chr19:1863568..1863586,-!p1@KLF16!0.71!153.52!KLF16;;chr6:35464817..35464894,-!p1@TEAD3!0.71!71.87!TEAD3;;chr12:132628963..132629027,+!p1@NOC4L!0.71!67.69!NOC4L;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.56!EPAS1;;chr17:41623009..41623053,-!p4@ETV4!0.71!6.98!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.28!IRX3;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.28!BMP2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.71!4.19!ZSCAN1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.71!4.19!ZBTB7B;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.19!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.71!4.19!MITF;;chr16:29817841..29817865,+!p1@MAZ!0.70!96.99!MAZ;;chr16:29817665..29817719,+!p3@MAZ!0.70!69.78!MAZ;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.22!SREBF2;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.15!KLF5;;chr22:21356378..21356422,-!p2@THAP7!0.70!39.77!THAP7;;chr17:17740330..17740349,-!p3@SREBF1!0.70!30.01!SREBF1;;chr2:242576641..242576731,-!p2@THAP4!0.70!17.45!THAP4;;chr12:3069037..3069119,+!p2@TEAD4!0.70!15.35!TEAD4;;chr1:935398..935465,-!p2@HES4!0.70!9.07!HES4;;chrX:129244655..129244697,-!p4@ELF4!0.70!7.68!ELF4;;chr16:29818199..29818216,+!p11@MAZ!0.70!6.98!MAZ;;chr19:13213662..13213686,-!p1@LYL1!0.70!6.28!LYL1;;chr21:36260773..36260804,-!p7@RUNX1!0.70!5.58!RUNX1;;chr11:65686855..65686946,+!p1@DRAP1!0.69!338.43!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.31!HMGA1;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr17:41623667..41623682,-!p8@ETV4!0.69!4.19!ETV4;;chr19:1863591..1863611,-!p2@KLF16!0.68!41.17!KLF16;;chr7:1570322..1570360,+!p1@MAFK!0.68!36.29!MAFK;;chr8:49833948..49833973,-!p2@SNAI2!0.68!27.21!SN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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=Previously: Alveolar Epithelial Cells, donor2
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|id=FF:11590-120G6
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|library_id=CNhs12084
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|name=Alveolar Epithelial Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|rna_box=120
|rna_catalog_number=SC3205
|rna_concentration=1.3
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=lot:4978
|rna_od260/230=
|rna_od260/280=
|rna_position=G6
|rna_rin=9.8
|rna_sample_type=total RNA
|rna_tube_id=120G6
|rna_weight_ug=10
|rnaseq_library_id=SRhi10002.CTTGTA
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=epithelial cell of lung, small airway
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.94636287617465e-229!GO:0005737;cytoplasm;3.8461781257891e-168!GO:0043226;organelle;2.40810059372769e-147!GO:0043229;intracellular organelle;3.4920864231849e-147!GO:0043231;intracellular membrane-bound organelle;1.08011419198904e-136!GO:0043227;membrane-bound organelle;1.37851145027105e-136!GO:0044444;cytoplasmic part;4.08143635957165e-119!GO:0044422;organelle part;1.01300668074491e-116!GO:0044446;intracellular organelle part;1.86960340471982e-115!GO:0005515;protein binding;1.10564932275513e-67!GO:0032991;macromolecular complex;3.02732200953544e-64!GO:0005739;mitochondrion;4.55899785414159e-64!GO:0044237;cellular metabolic process;2.89452212593015e-63!GO:0030529;ribonucleoprotein complex;3.02234850183785e-63!GO:0044238;primary metabolic process;3.35895186134185e-62!GO:0043170;macromolecule metabolic process;9.62185304310226e-54!GO:0031090;organelle membrane;7.26139527050437e-50!GO:0005840;ribosome;1.63319710894183e-47!GO:0043233;organelle lumen;2.53883364162017e-46!GO:0031974;membrane-enclosed lumen;2.53883364162017e-46!GO:0044429;mitochondrial part;5.14437858426033e-44!GO:0003735;structural constituent of ribosome;8.5828624341602e-44!GO:0003723;RNA binding;1.89293965331667e-42!GO:0009058;biosynthetic process;1.26956178024232e-41!GO:0005634;nucleus;6.39068251579927e-41!GO:0006412;translation;1.51449054265964e-40!GO:0019538;protein metabolic process;1.68477090883367e-40!GO:0044428;nuclear part;3.64570827978985e-40!GO:0033279;ribosomal subunit;2.30655678130154e-38!GO:0031967;organelle envelope;3.13150077263826e-37!GO:0044249;cellular biosynthetic process;3.42068664064275e-37!GO:0031975;envelope;7.12017839722143e-37!GO:0044267;cellular protein metabolic process;5.12145310832767e-36!GO:0044260;cellular macromolecule metabolic process;9.8422430156866e-36!GO:0009059;macromolecule biosynthetic process;7.0438631327603e-35!GO:0016043;cellular component organization and biogenesis;9.60829552919151e-35!GO:0043228;non-membrane-bound organelle;8.17472900144719e-32!GO:0043232;intracellular non-membrane-bound organelle;8.17472900144719e-32!GO:0005740;mitochondrial envelope;1.48118630923938e-31!GO:0043234;protein complex;5.32290507011822e-31!GO:0031966;mitochondrial membrane;1.31137423032019e-29!GO:0015031;protein transport;3.3119237457669e-29!GO:0006996;organelle organization and biogenesis;4.30409359385898e-29!GO:0006396;RNA processing;9.96058684161368e-29!GO:0005829;cytosol;1.53065384111281e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.82652341505355e-28!GO:0033036;macromolecule localization;2.7017002230669e-28!GO:0019866;organelle inner membrane;2.7017002230669e-28!GO:0043283;biopolymer metabolic process;8.65064661164646e-28!GO:0008104;protein localization;7.39856319428154e-27!GO:0005743;mitochondrial inner membrane;1.11215279197623e-26!GO:0045184;establishment of protein localization;1.13829869724368e-26!GO:0031981;nuclear lumen;5.61702206882845e-25!GO:0065003;macromolecular complex assembly;1.22420036027866e-22!GO:0046907;intracellular transport;1.31660581063766e-22!GO:0044445;cytosolic part;5.30900118621603e-22!GO:0010467;gene expression;3.08510028430219e-21!GO:0015934;large ribosomal subunit;1.41067661933102e-20!GO:0016071;mRNA metabolic process;2.56258619508929e-20!GO:0022607;cellular component assembly;4.356981454569e-20!GO:0006259;DNA metabolic process;6.06496225799283e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.72697342021419e-19!GO:0044455;mitochondrial membrane part;4.69603018399674e-19!GO:0015935;small ribosomal subunit;7.35557766117275e-19!GO:0012505;endomembrane system;1.57829742907873e-18!GO:0008380;RNA splicing;2.04831966554068e-18!GO:0006886;intracellular protein transport;5.10656574602894e-18!GO:0007049;cell cycle;6.27936900846136e-18!GO:0006119;oxidative phosphorylation;1.27067391015227e-17!GO:0006397;mRNA processing;2.18215780195721e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.53917950787183e-17!GO:0031980;mitochondrial lumen;1.19980604106898e-15!GO:0005759;mitochondrial matrix;1.19980604106898e-15!GO:0005783;endoplasmic reticulum;1.72999369192988e-15!GO:0005746;mitochondrial respiratory chain;6.67920237141946e-15!GO:0044432;endoplasmic reticulum part;1.36938639282148e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.45974522678184e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.40340034689556e-14!GO:0022402;cell cycle process;3.86307406116999e-14!GO:0005794;Golgi apparatus;4.53169665309343e-14!GO:0043412;biopolymer modification;4.75433676174634e-14!GO:0005654;nucleoplasm;1.10533461802424e-13!GO:0008134;transcription factor binding;1.22384750023236e-13!GO:0051649;establishment of cellular localization;1.60131272881436e-13!GO:0000166;nucleotide binding;1.60635304389929e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.77022694436753e-13!GO:0003954;NADH dehydrogenase activity;1.77022694436753e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.77022694436753e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.86130032587184e-13!GO:0006457;protein folding;3.85555980464043e-13!GO:0051641;cellular localization;4.37489505961833e-13!GO:0005681;spliceosome;6.7499411011955e-13!GO:0006464;protein modification process;7.0217685350632e-13!GO:0016874;ligase activity;7.83191537839275e-13!GO:0048770;pigment granule;8.3693849545304e-13!GO:0042470;melanosome;8.3693849545304e-13!GO:0016462;pyrophosphatase activity;3.07979595018601e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.49457767560228e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;3.71131186240853e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.06164417413986e-12!GO:0051186;cofactor metabolic process;5.50393155063054e-12!GO:0005761;mitochondrial ribosome;5.77264699029947e-12!GO:0000313;organellar ribosome;5.77264699029947e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.78466429743708e-12!GO:0045271;respiratory chain complex I;7.78466429743708e-12!GO:0005747;mitochondrial respiratory chain complex I;7.78466429743708e-12!GO:0044451;nucleoplasm part;9.61042274211438e-12!GO:0005730;nucleolus;1.06468927477852e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.09979844545405e-11!GO:0042773;ATP synthesis coupled electron transport;1.09979844545405e-11!GO:0017111;nucleoside-triphosphatase activity;1.46000063109387e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.54435072014785e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.54461060058151e-11!GO:0044265;cellular macromolecule catabolic process;2.68830148776822e-11!GO:0005789;endoplasmic reticulum membrane;2.86131274757932e-11!GO:0012501;programmed cell death;5.10006917109593e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;7.05261944575646e-11!GO:0000278;mitotic cell cycle;7.8132078127086e-11!GO:0006915;apoptosis;9.01493602860909e-11!GO:0006512;ubiquitin cycle;1.20309152342286e-10!GO:0051276;chromosome organization and biogenesis;1.4185868813078e-10!GO:0009057;macromolecule catabolic process;2.28848843294469e-10!GO:0043285;biopolymer catabolic process;2.31585780625971e-10!GO:0032553;ribonucleotide binding;2.71491366590495e-10!GO:0032555;purine ribonucleotide binding;2.71491366590495e-10!GO:0006605;protein targeting;2.93744725361209e-10!GO:0009055;electron carrier activity;3.69934881428756e-10!GO:0006323;DNA packaging;3.877589950905e-10!GO:0017076;purine nucleotide binding;4.84313962659788e-10!GO:0043687;post-translational protein modification;6.04761832710712e-10!GO:0044248;cellular catabolic process;7.49167596376583e-10!GO:0000502;proteasome complex (sensu Eukaryota);9.06426319257507e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.05475692958963e-09!GO:0016740;transferase activity;1.13894717771254e-09!GO:0019941;modification-dependent protein catabolic process;1.1880859859751e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.1880859859751e-09!GO:0008219;cell death;1.35332163983329e-09!GO:0016265;death;1.35332163983329e-09!GO:0051726;regulation of cell cycle;1.37978817694826e-09!GO:0044257;cellular protein catabolic process;1.63311436471143e-09!GO:0006732;coenzyme metabolic process;1.74152287037668e-09!GO:0000074;regulation of progression through cell cycle;2.16242665534141e-09!GO:0006511;ubiquitin-dependent protein catabolic process;2.2653758147923e-09!GO:0044427;chromosomal part;2.46558877189008e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.34312951526497e-09!GO:0000375;RNA splicing, via transesterification reactions;4.34312951526497e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.34312951526497e-09!GO:0051082;unfolded protein binding;4.49322380057662e-09!GO:0003712;transcription cofactor activity;6.38618913757572e-09!GO:0000785;chromatin;6.43918752684228e-09!GO:0005694;chromosome;7.32876095166596e-09!GO:0016192;vesicle-mediated transport;7.57298356030099e-09!GO:0022618;protein-RNA complex assembly;7.57298356030099e-09!GO:0007005;mitochondrion organization and biogenesis;1.11789686343539e-08!GO:0030163;protein catabolic process;1.12239680522493e-08!GO:0006333;chromatin assembly or disassembly;1.2727968599345e-08!GO:0048193;Golgi vesicle transport;1.54620731174428e-08!GO:0048523;negative regulation of cellular process;1.84430552800018e-08!GO:0022403;cell cycle phase;2.55784494252382e-08!GO:0031497;chromatin assembly;2.69389738120578e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.85932192825867e-08!GO:0005524;ATP binding;3.85932192825867e-08!GO:0006334;nucleosome assembly;4.30011701595399e-08!GO:0042254;ribosome biogenesis and assembly;4.82389990640078e-08!GO:0043067;regulation of programmed cell death;5.20453294585968e-08!GO:0006974;response to DNA damage stimulus;6.22083704592998e-08!GO:0032559;adenyl ribonucleotide binding;6.29804709496364e-08!GO:0042981;regulation of apoptosis;6.44762362988199e-08!GO:0005768;endosome;6.9070282534617e-08!GO:0006399;tRNA metabolic process;8.46222649494766e-08!GO:0030554;adenyl nucleotide binding;1.3291596921797e-07!GO:0007067;mitosis;1.67749570862596e-07!GO:0006461;protein complex assembly;1.7092454941331e-07!GO:0005635;nuclear envelope;1.88143674263488e-07!GO:0000087;M phase of mitotic cell cycle;2.1864621160321e-07!GO:0009259;ribonucleotide metabolic process;2.46566878148132e-07!GO:0003676;nucleic acid binding;2.5897735153041e-07!GO:0048519;negative regulation of biological process;2.76232925126325e-07!GO:0006163;purine nucleotide metabolic process;2.76232925126325e-07!GO:0065004;protein-DNA complex assembly;3.02155399658055e-07!GO:0044431;Golgi apparatus part;3.07235809174082e-07!GO:0008135;translation factor activity, nucleic acid binding;3.78796935326247e-07!GO:0009150;purine ribonucleotide metabolic process;4.04506783024484e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.71072979309923e-07!GO:0031965;nuclear membrane;5.28612171931343e-07!GO:0051188;cofactor biosynthetic process;5.48399359070673e-07!GO:0008639;small protein conjugating enzyme activity;7.46708992041612e-07!GO:0006260;DNA replication;1.06508440270755e-06!GO:0006913;nucleocytoplasmic transport;1.09766396366127e-06!GO:0006164;purine nucleotide biosynthetic process;1.0979330826653e-06!GO:0016491;oxidoreductase activity;1.12967748605314e-06!GO:0005793;ER-Golgi intermediate compartment;1.19728690909669e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.39227180928328e-06!GO:0009260;ribonucleotide biosynthetic process;1.48262946341405e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.50704477914447e-06!GO:0004842;ubiquitin-protein ligase activity;1.5083128826956e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.54287805483775e-06!GO:0051169;nuclear transport;1.86496747423229e-06!GO:0009141;nucleoside triphosphate metabolic process;1.8985267855402e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.09736250869383e-06!GO:0044453;nuclear membrane part;2.38320063483274e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.46576731335185e-06!GO:0019787;small conjugating protein ligase activity;2.57060907326819e-06!GO:0006793;phosphorus metabolic process;2.84137035815641e-06!GO:0006796;phosphate metabolic process;2.84137035815641e-06!GO:0016564;transcription repressor activity;2.85730942677518e-06!GO:0006281;DNA repair;2.93704862920453e-06!GO:0017038;protein import;3.72092172906683e-06!GO:0016070;RNA metabolic process;3.72538977899313e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.02834274639012e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.02834274639012e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.38057505471463e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.38057505471463e-06!GO:0003714;transcription corepressor activity;5.22347041897878e-06!GO:0016604;nuclear body;5.52176083863351e-06!GO:0065002;intracellular protein transport across a membrane;6.560374226225e-06!GO:0005762;mitochondrial large ribosomal subunit;6.7299905306759e-06!GO:0000315;organellar large ribosomal subunit;6.7299905306759e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.01574261427329e-06!GO:0043069;negative regulation of programmed cell death;7.03909554716724e-06!GO:0000279;M phase;7.08118172814444e-06!GO:0006366;transcription from RNA polymerase II promoter;7.18700188185634e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.40816655567064e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.40816655567064e-06!GO:0009719;response to endogenous stimulus;8.11074580264795e-06!GO:0051301;cell division;8.83735943934828e-06!GO:0015986;ATP synthesis coupled proton transport;9.17914542889047e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.17914542889047e-06!GO:0019829;cation-transporting ATPase activity;9.24476597042932e-06!GO:0015630;microtubule cytoskeleton;1.09311620114601e-05!GO:0042623;ATPase activity, coupled;1.09982409664539e-05!GO:0000139;Golgi membrane;1.12527289023704e-05!GO:0042802;identical protein binding;1.22157887177198e-05!GO:0006364;rRNA processing;1.33518121953597e-05!GO:0043066;negative regulation of apoptosis;1.33518121953597e-05!GO:0008565;protein transporter activity;1.33788066123725e-05!GO:0000786;nucleosome;1.34589407061174e-05!GO:0016881;acid-amino acid ligase activity;1.34727508794204e-05!GO:0009056;catabolic process;1.3912943717035e-05!GO:0045259;proton-transporting ATP synthase complex;1.58764375139141e-05!GO:0016568;chromatin modification;1.75209676046102e-05!GO:0006446;regulation of translational initiation;2.22747955644381e-05!GO:0016072;rRNA metabolic process;2.25865615494678e-05!GO:0030120;vesicle coat;2.46022728874924e-05!GO:0030662;coated vesicle membrane;2.46022728874924e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.66522799468569e-05!GO:0005773;vacuole;2.8625016186933e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.91360556001989e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.91360556001989e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.91360556001989e-05!GO:0016310;phosphorylation;3.01454281212739e-05!GO:0003743;translation initiation factor activity;3.4140954565766e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.47412405313286e-05!GO:0006916;anti-apoptosis;3.50311212350491e-05!GO:0045786;negative regulation of progression through cell cycle;3.59161268667941e-05!GO:0003924;GTPase activity;3.76231780958907e-05!GO:0048475;coated membrane;3.94120257793631e-05!GO:0030117;membrane coat;3.94120257793631e-05!GO:0044440;endosomal part;4.1343472481128e-05!GO:0010008;endosome membrane;4.1343472481128e-05!GO:0016887;ATPase activity;4.18820837377482e-05!GO:0005905;coated pit;4.45229454766324e-05!GO:0046034;ATP metabolic process;4.45229454766324e-05!GO:0008654;phospholipid biosynthetic process;4.45229454766324e-05!GO:0050794;regulation of cellular process;4.47962736677052e-05!GO:0009108;coenzyme biosynthetic process;4.70715202712191e-05!GO:0009117;nucleotide metabolic process;4.82429992927018e-05!GO:0031252;leading edge;5.08914289166983e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.35133776227654e-05!GO:0065009;regulation of a molecular function;5.3884504237975e-05!GO:0019843;rRNA binding;5.73141136363836e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.39470012179846e-05!GO:0006413;translational initiation;6.40725052352447e-05!GO:0048522;positive regulation of cellular process;6.46136394807479e-05!GO:0009060;aerobic respiration;6.92607933808253e-05!GO:0016779;nucleotidyltransferase activity;6.95075612973878e-05!GO:0006754;ATP biosynthetic process;6.95075612973878e-05!GO:0006753;nucleoside phosphate metabolic process;6.95075612973878e-05!GO:0006752;group transfer coenzyme metabolic process;7.18196339467056e-05!GO:0051246;regulation of protein metabolic process;7.19938478089084e-05!GO:0031988;membrane-bound vesicle;7.60825998510941e-05!GO:0043038;amino acid activation;8.34322790471162e-05!GO:0006418;tRNA aminoacylation for protein translation;8.34322790471162e-05!GO:0043039;tRNA aminoacylation;8.34322790471162e-05!GO:0003899;DNA-directed RNA polymerase activity;8.68645574194744e-05!GO:0006091;generation of precursor metabolites and energy;8.79862506919751e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.09756750177811e-05!GO:0008610;lipid biosynthetic process;9.54980439361826e-05!GO:0005839;proteasome core complex (sensu Eukaryota);0.000101968390927874!GO:0016469;proton-transporting two-sector ATPase complex;0.000103575175439445!GO:0005643;nuclear pore;0.000105494846089086!GO:0043623;cellular protein complex assembly;0.000107623187281141!GO:0016853;isomerase activity;0.000114259990402064!GO:0006888;ER to Golgi vesicle-mediated transport;0.000121302217226021!GO:0005770;late endosome;0.000130674830024671!GO:0016563;transcription activator activity;0.00013783178048238!GO:0019899;enzyme binding;0.00014273433613922!GO:0005667;transcription factor complex;0.000153906807657079!GO:0031324;negative regulation of cellular metabolic process;0.0001549716072356!GO:0005788;endoplasmic reticulum lumen;0.000170021451554322!GO:0016126;sterol biosynthetic process;0.000171673023430486!GO:0051329;interphase of mitotic cell cycle;0.000187578509130783!GO:0007010;cytoskeleton organization and biogenesis;0.000217584898854437!GO:0005525;GTP binding;0.000250601854161208!GO:0016787;hydrolase activity;0.00025252900078863!GO:0030176;integral to endoplasmic reticulum membrane;0.000259408487411318!GO:0007264;small GTPase mediated signal transduction;0.000259408487411318!GO:0000323;lytic vacuole;0.000259408487411318!GO:0005764;lysosome;0.000259408487411318!GO:0030036;actin cytoskeleton organization and biogenesis;0.000276082954447279!GO:0000245;spliceosome assembly;0.000278858122669203!GO:0009892;negative regulation of metabolic process;0.000291165428218119!GO:0007243;protein kinase cascade;0.000296076629713739!GO:0031982;vesicle;0.000319114494984423!GO:0051325;interphase;0.000324556004183972!GO:0031410;cytoplasmic vesicle;0.000325769741255475!GO:0016567;protein ubiquitination;0.000435784925585332!GO:0016607;nuclear speck;0.000438234819831083!GO:0007006;mitochondrial membrane organization and biogenesis;0.000485483851764538!GO:0008637;apoptotic mitochondrial changes;0.000506314116330509!GO:0004298;threonine endopeptidase activity;0.000511088236371883!GO:0045454;cell redox homeostasis;0.000524959057896806!GO:0046930;pore complex;0.000531082597628911!GO:0016044;membrane organization and biogenesis;0.00055669915439775!GO:0003697;single-stranded DNA binding;0.000559004817965447!GO:0045333;cellular respiration;0.000566024557200668!GO:0033116;ER-Golgi intermediate compartment membrane;0.000621562354968963!GO:0008033;tRNA processing;0.000625413020235481!GO:0032446;protein modification by small protein conjugation;0.000660476331003299!GO:0005813;centrosome;0.00070964631205388!GO:0005769;early endosome;0.000739723594310683!GO:0000314;organellar small ribosomal subunit;0.000739723594310683!GO:0005763;mitochondrial small ribosomal subunit;0.000739723594310683!GO:0003713;transcription coactivator activity;0.000750132734566167!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000889908667615634!GO:0006839;mitochondrial transport;0.000893987741026548!GO:0030118;clathrin coat;0.000905419657732214!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00093383909884935!GO:0030132;clathrin coat of coated pit;0.000973522104356288!GO:0008361;regulation of cell size;0.000992632591197833!GO:0032561;guanyl ribonucleotide binding;0.00103134832065483!GO:0019001;guanyl nucleotide binding;0.00103134832065483!GO:0016049;cell growth;0.00105862125555247!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00105862125555247!GO:0006626;protein targeting to mitochondrion;0.00107510224524338!GO:0030867;rough endoplasmic reticulum membrane;0.00107510224524338!GO:0048518;positive regulation of biological process;0.00109039245573589!GO:0031968;organelle outer membrane;0.00112386065807957!GO:0008092;cytoskeletal protein binding;0.0011817197983779!GO:0001726;ruffle;0.00119012002542536!GO:0046474;glycerophospholipid biosynthetic process;0.00120931566790704!GO:0006082;organic acid metabolic process;0.00121321232112927!GO:0051170;nuclear import;0.00121321232112927!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00121500803950032!GO:0006606;protein import into nucleus;0.00133968186300874!GO:0005815;microtubule organizing center;0.00134927515549006!GO:0031301;integral to organelle membrane;0.0013849306007264!GO:0019867;outer membrane;0.00143224644012041!GO:0008632;apoptotic program;0.00143917995715517!GO:0030029;actin filament-based process;0.00145670565304346!GO:0006099;tricarboxylic acid cycle;0.00146375640197361!GO:0046356;acetyl-CoA catabolic process;0.00146375640197361!GO:0006084;acetyl-CoA metabolic process;0.0014982154830792!GO:0030119;AP-type membrane coat adaptor complex;0.00151902220635948!GO:0019752;carboxylic acid metabolic process;0.00158404216229005!GO:0043681;protein import into mitochondrion;0.00168714804218192!GO:0006695;cholesterol biosynthetic process;0.00173952766069046!GO:0005741;mitochondrial outer membrane;0.00174632452471406!GO:0044262;cellular carbohydrate metabolic process;0.00191059458405104!GO:0001558;regulation of cell growth;0.00193312659023987!GO:0030131;clathrin adaptor complex;0.00197188600244055!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00209406469735167!GO:0048468;cell development;0.0021639899376473!GO:0050789;regulation of biological process;0.00239744954237587!GO:0016481;negative regulation of transcription;0.00240637784942514!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0026342855979701!GO:0005774;vacuolar membrane;0.00264418265262264!GO:0046467;membrane lipid biosynthetic process;0.00280881594164879!GO:0050790;regulation of catalytic activity;0.00295298210621321!GO:0001666;response to hypoxia;0.00297892875749448!GO:0043065;positive regulation of apoptosis;0.00301868124381164!GO:0016301;kinase activity;0.00304971753430757!GO:0008026;ATP-dependent helicase activity;0.00305584117874614!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00325349200468399!GO:0015399;primary active transmembrane transporter activity;0.00325349200468399!GO:0051187;cofactor catabolic process;0.00325851685196484!GO:0043068;positive regulation of programmed cell death;0.00337182538595145!GO:0016859;cis-trans isomerase activity;0.00369827597190123!GO:0005684;U2-dependent spliceosome;0.00371298328303467!GO:0030133;transport vesicle;0.00371298328303467!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00373639546201734!GO:0051920;peroxiredoxin activity;0.00390224688923769!GO:0008250;oligosaccharyl transferase complex;0.00393322400003118!GO:0030125;clathrin vesicle coat;0.00408788181729216!GO:0030665;clathrin coated vesicle membrane;0.00408788181729216!GO:0005048;signal sequence binding;0.00441950384340803!GO:0040029;regulation of gene expression, epigenetic;0.00445315615357965!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00450794144479279!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00450794144479279!GO:0001836;release of cytochrome c from mitochondria;0.00451980143896754!GO:0005996;monosaccharide metabolic process;0.00462552873328518!GO:0019318;hexose metabolic process;0.00464614102380547!GO:0005798;Golgi-associated vesicle;0.00477724880734619!GO:0004386;helicase activity;0.00496973023054057!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00514159168664512!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00514305306480502!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00515061131930057!GO:0006403;RNA localization;0.00517599466030106!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00525843894644025!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00525843894644025!GO:0009109;coenzyme catabolic process;0.00528953112022582!GO:0051338;regulation of transferase activity;0.00536251690559953!GO:0031902;late endosome membrane;0.00542334052792099!GO:0005791;rough endoplasmic reticulum;0.00542334052792099!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00542334052792099!GO:0043488;regulation of mRNA stability;0.00542334052792099!GO:0043487;regulation of RNA stability;0.00542334052792099!GO:0050657;nucleic acid transport;0.00542334052792099!GO:0051236;establishment of RNA localization;0.00542334052792099!GO:0050658;RNA transport;0.00542334052792099!GO:0051427;hormone receptor binding;0.00577901406538351!GO:0017166;vinculin binding;0.00605209535717628!GO:0006979;response to oxidative stress;0.00605209535717628!GO:0051789;response to protein stimulus;0.00605209535717628!GO:0006986;response to unfolded protein;0.00605209535717628!GO:0040008;regulation of growth;0.00615417445832621!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00637508417324451!GO:0005874;microtubule;0.00652777093418428!GO:0005819;spindle;0.00659700666898321!GO:0006066;alcohol metabolic process;0.0067029769671991!GO:0044437;vacuolar part;0.00672102065744524!GO:0006414;translational elongation;0.00686128199796287!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0070133066424601!GO:0015002;heme-copper terminal oxidase activity;0.0070133066424601!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0070133066424601!GO:0004129;cytochrome-c oxidase activity;0.0070133066424601!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00724678816824589!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00724678816824589!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00724678816824589!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00761954940395149!GO:0043549;regulation of kinase activity;0.00767554826566297!GO:0006509;membrane protein ectodomain proteolysis;0.00794617644853361!GO:0033619;membrane protein proteolysis;0.00794617644853361!GO:0006595;polyamine metabolic process;0.00809869792252139!GO:0009165;nucleotide biosynthetic process;0.00827175962900539!GO:0030658;transport vesicle membrane;0.00838411446745989!GO:0045941;positive regulation of transcription;0.00872853340618934!GO:0006520;amino acid metabolic process;0.00873259056869382!GO:0000151;ubiquitin ligase complex;0.00918381864144899!GO:0046489;phosphoinositide biosynthetic process;0.00947527306737763!GO:0035257;nuclear hormone receptor binding;0.00951455451175606!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00957425251068463!GO:0016125;sterol metabolic process;0.00976293146599895!GO:0003684;damaged DNA binding;0.00997498230354745!GO:0005765;lysosomal membrane;0.0100356986622517!GO:0006778;porphyrin metabolic process;0.0102841156983704!GO:0033013;tetrapyrrole metabolic process;0.0102841156983704!GO:0018196;peptidyl-asparagine modification;0.0105602034855581!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0105602034855581!GO:0008629;induction of apoptosis by intracellular signals;0.0107452978706506!GO:0007265;Ras protein signal transduction;0.0111833545951264!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0119548800649765!GO:0016272;prefoldin complex;0.0119548800649765!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0120768389455323!GO:0051098;regulation of binding;0.012116878386162!GO:0030659;cytoplasmic vesicle membrane;0.012116878386162!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0124947421376257!GO:0043154;negative regulation of caspase activity;0.0125614768829145!GO:0045926;negative regulation of growth;0.0133705786326606!GO:0005885;Arp2/3 protein complex;0.0134912710074593!GO:0006458;'de novo' protein folding;0.0138963451565805!GO:0051084;'de novo' posttranslational protein folding;0.0138963451565805!GO:0004576;oligosaccharyl transferase activity;0.0140811731140818!GO:0050178;phenylpyruvate tautomerase activity;0.0143920302374043!GO:0016741;transferase activity, transferring one-carbon groups;0.0146887642126784!GO:0008168;methyltransferase activity;0.0150893073799891!GO:0045334;clathrin-coated endocytic vesicle;0.0151072525687262!GO:0042168;heme metabolic process;0.0153310773158973!GO:0006917;induction of apoptosis;0.0153692930099875!GO:0006779;porphyrin biosynthetic process;0.015841703000252!GO:0033014;tetrapyrrole biosynthetic process;0.015841703000252!GO:0043021;ribonucleoprotein binding;0.0158451297732867!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0162787170151503!GO:0051101;regulation of DNA binding;0.0166919886715988!GO:0045859;regulation of protein kinase activity;0.0167188115242845!GO:0051252;regulation of RNA metabolic process;0.0171476519784154!GO:0001889;liver development;0.0176672920750871!GO:0046822;regulation of nucleocytoplasmic transport;0.0177107635991953!GO:0043566;structure-specific DNA binding;0.0180272962511643!GO:0031300;intrinsic to organelle membrane;0.0184144557514706!GO:0008652;amino acid biosynthetic process;0.0186227883190435!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0191115637186795!GO:0005637;nuclear inner membrane;0.0195387555857289!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0197814669641331!GO:0012502;induction of programmed cell death;0.0197814669641331!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.019894958834408!GO:0030027;lamellipodium;0.0202581754135439!GO:0030660;Golgi-associated vesicle membrane;0.0204160265600679!GO:0043492;ATPase activity, coupled to movement of substances;0.0207311926228433!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0207440544065715!GO:0045893;positive regulation of transcription, DNA-dependent;0.0214442282813984!GO:0006740;NADPH regeneration;0.022003794560448!GO:0006098;pentose-phosphate shunt;0.022003794560448!GO:0004674;protein serine/threonine kinase activity;0.0220593057271937!GO:0006783;heme biosynthetic process;0.0222664999416203!GO:0048471;perinuclear region of cytoplasm;0.022987498984051!GO:0007088;regulation of mitosis;0.0232425989483076!GO:0016860;intramolecular oxidoreductase activity;0.0234401887372661!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0234822740228941!GO:0043414;biopolymer methylation;0.0240193284831159!GO:0006261;DNA-dependent DNA replication;0.0240193284831159!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0242080404753013!GO:0005856;cytoskeleton;0.0242631232207044!GO:0016791;phosphoric monoester hydrolase activity;0.0243375652626374!GO:0030880;RNA polymerase complex;0.0243375652626374!GO:0015992;proton transport;0.0245882083489322!GO:0030308;negative regulation of cell growth;0.0246546260303272!GO:0043284;biopolymer biosynthetic process;0.02492597970926!GO:0050662;coenzyme binding;0.0249811005391895!GO:0006118;electron transport;0.0251326444717509!GO:0051085;chaperone cofactor-dependent protein folding;0.0253593647360509!GO:0031272;regulation of pseudopodium formation;0.0254079740271629!GO:0031269;pseudopodium formation;0.0254079740271629!GO:0031344;regulation of cell projection organization and biogenesis;0.0254079740271629!GO:0031268;pseudopodium organization and biogenesis;0.0254079740271629!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0254079740271629!GO:0031274;positive regulation of pseudopodium formation;0.0254079740271629!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0254079740271629!GO:0010257;NADH dehydrogenase complex assembly;0.0254079740271629!GO:0033108;mitochondrial respiratory chain complex assembly;0.0254079740271629!GO:0045792;negative regulation of cell size;0.0255993524094578!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0259785445129984!GO:0044433;cytoplasmic vesicle part;0.0262473574008211!GO:0051168;nuclear export;0.0266892641130886!GO:0006818;hydrogen transport;0.0267380613315991!GO:0016783;sulfurtransferase activity;0.0268794062877682!GO:0030128;clathrin coat of endocytic vesicle;0.0272189504584423!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0272189504584423!GO:0030122;AP-2 adaptor complex;0.0272189504584423!GO:0030031;cell projection biogenesis;0.0280475148814634!GO:0006897;endocytosis;0.0282295154085888!GO:0010324;membrane invagination;0.0282295154085888!GO:0048487;beta-tubulin binding;0.0282295154085888!GO:0009967;positive regulation of signal transduction;0.0286156862616671!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0289688269903916!GO:0016197;endosome transport;0.029168052972832!GO:0051348;negative regulation of transferase activity;0.029303188068539!GO:0046870;cadmium ion binding;0.0306503860036249!GO:0009100;glycoprotein metabolic process;0.031029195942836!GO:0033673;negative regulation of kinase activity;0.031029195942836!GO:0006469;negative regulation of protein kinase activity;0.031029195942836!GO:0006950;response to stress;0.0314024271888118!GO:0008538;proteasome activator activity;0.0320848489709106!GO:0051028;mRNA transport;0.0324953732082184!GO:0048144;fibroblast proliferation;0.0328274009992469!GO:0048145;regulation of fibroblast proliferation;0.0328274009992469!GO:0030433;ER-associated protein catabolic process;0.0341694165387352!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0341694165387352!GO:0015980;energy derivation by oxidation of organic compounds;0.0345420279557592!GO:0004680;casein kinase activity;0.0354411325455763!GO:0006613;cotranslational protein targeting to membrane;0.0358044786591286!GO:0003746;translation elongation factor activity;0.0362274923266761!GO:0006633;fatty acid biosynthetic process;0.0362274923266761!GO:0008243;plasminogen activator activity;0.0375754235064823!GO:0051287;NAD binding;0.0377328914514358!GO:0008139;nuclear localization sequence binding;0.0377902228520553!GO:0051087;chaperone binding;0.0379417847062351!GO:0045892;negative regulation of transcription, DNA-dependent;0.0389611752923973!GO:0000049;tRNA binding;0.0411449092166495!GO:0016311;dephosphorylation;0.0413001443512755!GO:0006007;glucose catabolic process;0.0417811723440452!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0422209446326145!GO:0006497;protein amino acid lipidation;0.0424041731164978!GO:0006338;chromatin remodeling;0.0425206066479888!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0427590731808075!GO:0055083;monovalent inorganic anion homeostasis;0.0427590731808075!GO:0055064;chloride ion homeostasis;0.0427590731808075!GO:0030644;cellular chloride ion homeostasis;0.0427590731808075!GO:0009119;ribonucleoside metabolic process;0.0432025547119486!GO:0006749;glutathione metabolic process;0.0432240629174138!GO:0000030;mannosyltransferase activity;0.0439762270131873!GO:0004128;cytochrome-b5 reductase activity;0.0441027354483461!GO:0006402;mRNA catabolic process;0.0442268857137878!GO:0006383;transcription from RNA polymerase III promoter;0.0447396023471642!GO:0006289;nucleotide-excision repair;0.0448188382044264!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0455172312051385!GO:0008283;cell proliferation;0.0455490833396472!GO:0044255;cellular lipid metabolic process;0.0456389650678446!GO:0003724;RNA helicase activity;0.0459136647758884!GO:0046519;sphingoid metabolic process;0.0460029003279168!GO:0046394;carboxylic acid biosynthetic process;0.046101975583363!GO:0016053;organic acid biosynthetic process;0.046101975583363!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0475117237133693!GO:0007040;lysosome organization and biogenesis;0.0475117237133693!GO:0006284;base-excision repair;0.047979986308748!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.047979986308748!GO:0000428;DNA-directed RNA polymerase complex;0.047979986308748!GO:0008213;protein amino acid alkylation;0.0480080703270976!GO:0006479;protein amino acid methylation;0.0480080703270976!GO:0006650;glycerophospholipid metabolic process;0.0481918419850447!GO:0032507;maintenance of cellular protein localization;0.0483290095436969!GO:0005862;muscle thin filament tropomyosin;0.0487190252385627!GO:0006506;GPI anchor biosynthetic process;0.0488932745587106!GO:0005657;replication fork;0.0495525609594476
|sample_id=11590
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=XCPE1{core}:3.31109148283;ZNF423:3.22258636159;ZNF148:2.58215693175;MYOD1:2.40637441649;POU2F1..3:2.38361292451;SP1:2.36821395205;SNAI1..3:2.20949378969;TFCP2:2.08798183657;GTF2A1,2:2.08254914832;ZEB1:1.916704322;RXRA_VDR{dimer}:1.9137999835;ESRRA:1.85186127108;PPARG:1.71595657259;ESR1:1.68075419646;bHLH_family:1.55853568013;TFAP2{A,C}:1.5240793245;NR5A1,2:1.48014546226;EBF1:1.444847627;TBP:1.3444515749;EP300:1.26003242836;TP53:1.23037600148;HAND1,2:1.2087459471;TEAD1:1.08523718705;LMO2:1.06548143995;ZIC1..3:1.05339904245;TLX1..3_NFIC{dimer}:1.02407261157;T:0.995111363314;RXR{A,B,G}:0.991275038319;TFAP2B:0.975136772849;LEF1_TCF7_TCF7L1,2:0.946712341698;GLI1..3:0.879855175104;TBX4,5:0.782427173292;FOXL1:0.774457423222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.765939209103;ZBTB6:0.765357308499;RREB1:0.714440180289;JUN:0.683878139371;TFAP4:0.667404514824;IKZF1:0.666353373768;XBP1:0.651113259321;PAX5:0.609700656932;SOX{8,9,10}:0.566571188188;PBX1:0.551466805875;SRF:0.543938232392;SPZ1:0.531931310178;NKX2-3_NKX2-5:0.525388418807;HIC1:0.503360261292;MTF1:0.464591051891;ONECUT1,2:0.454032349029;ELK1,4_GABP{A,B1}:0.442391466457;NFE2L1:0.440923336697;BACH2:0.427363236012;HOX{A5,B5}:0.417500768995;FOS_FOS{B,L1}_JUN{B,D}:0.408592390493;ZNF143:0.383664597266;NR3C1:0.367965196168;REST:0.364418742715;PAX1,9:0.346625717545;NFY{A,B,C}:0.344522429837;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.338902173721;FOXM1:0.318541976971;HNF4A_NR2F1,2:0.308680190766;AR:0.295685068335;NFE2:0.291071483859;PAX8:0.246161490924;SOX2:0.231486373465;VSX1,2:0.230519749291;FOSL2:0.212338324047;NR6A1:0.210033675618;NFKB1_REL_RELA:0.175651079942;TAL1_TCF{3,4,12}:0.141258722363;MAZ:0.125092869121;HNF1A:0.0995383985906;PATZ1:0.0886429369866;NANOG:0.0704317229549;UFEwm:0.0632699277259;ARID5B:0.0626179406361;GZF1:0.0210019512068;KLF4:0.00607244471222;GFI1:0.00058547817252;CDC5L:-0.00025303847285;E2F1..5:-0.016632644947;STAT5{A,B}:-0.0206618469688;FOX{F1,F2,J1}:-0.0246286631453;TOPORS:-0.0257423880763;TFDP1:-0.10611824688;HMX1:-0.125555484654;GTF2I:-0.131585677431;FOXQ1:-0.154681624446;MED-1{core}:-0.158749931775;LHX3,4:-0.162822714446;HLF:-0.165578983316;HIF1A:-0.16864818627;MEF2{A,B,C,D}:-0.169929991609;GATA6:-0.180074188874;ETS1,2:-0.247438724084;CRX:-0.312315337577;STAT2,4,6:-0.344656717026;GFI1B:-0.357154717687;RFX1:-0.373037888487;POU3F1..4:-0.40880988799;RUNX1..3:-0.425236208141;NKX3-2:-0.48784045041;SOX17:-0.495392720374;ZNF238:-0.501287019096;GCM1,2:-0.504781799854;CEBPA,B_DDIT3:-0.519729180667;ATF2:-0.554607828172;MTE{core}:-0.574909564473;NFE2L2:-0.580022544947;PAX2:-0.587115865142;MAFB:-0.601032219796;SPIB:-0.609228751423;HOX{A4,D4}:-0.610660805657;PITX1..3:-0.631040945748;SMAD1..7,9:-0.669983321912;ATF6:-0.671885211835;NRF1:-0.67547062436;POU6F1:-0.675872277002;MZF1:-0.694061740231;ELF1,2,4:-0.695067377265;EGR1..3:-0.721549088304;NHLH1,2:-0.765021672065;ZFP161:-0.76946252911;CREB1:-0.776722609674;HES1:-0.793209471807;NR1H4:-0.810964148684;SPI1:-0.811164343012;HOXA9_MEIS1:-0.814881308238;YY1:-0.820897516608;MYB:-0.824518251689;NFIL3:-0.887122369217;ATF4:-0.90713538415;POU5F1:-0.940154567137;NKX2-2,8:-0.978946159256;RORA:-1.00570454524;PRRX1,2:-1.04013491542;OCT4_SOX2{dimer}:-1.04087608721;SOX5:-1.09446051837;FOXA2:-1.13753708749;PAX3,7:-1.1562339148;EN1,2:-1.15873428752;FOX{D1,D2}:-1.16184302125;FOX{I1,J2}:-1.1622699363;RFX2..5_RFXANK_RFXAP:-1.1702889843;HOX{A6,A7,B6,B7}:-1.20724710794;ATF5_CREB3:-1.21192217231;BREu{core}:-1.21349334131;FOXP3:-1.21892789147;TLX2:-1.22011502;CUX2:-1.22173846875;NANOG{mouse}:-1.26259972726;ADNP_IRX_SIX_ZHX:-1.26697695321;MYFfamily:-1.28052597453;ALX1:-1.28718912325;IRF7:-1.32267840795;POU1F1:-1.33484852588;IRF1,2:-1.34715243763;PAX6:-1.37271979708;ALX4:-1.40039868138;RBPJ:-1.43859671623;STAT1,3:-1.44368846579;TEF:-1.45951930332;DMAP1_NCOR{1,2}_SMARC:-1.46074418289;FOXP1:-1.49491901156;MYBL2:-1.56535622482;DBP:-1.62622768228;PRDM1:-1.62782388387;NFIX:-1.65441089461;TGIF1:-1.65954122898;NFATC1..3:-1.70549933549;ZNF384:-1.71027266307;FOXO1,3,4:-1.75294545046;PDX1:-1.79617127583;HBP1_HMGB_SSRP1_UBTF:-1.79688827176;FOXN1:-1.82746418448;AIRE:-1.83417094236;SREBF1,2:-1.84876455447;NKX3-1:-1.87175305588;EVI1:-1.9032145768;HSF1,2:-1.95064593208;AHR_ARNT_ARNT2:-1.97782811583;FOXD3:-2.246148566;NKX6-1,2:-2.35819501214;IKZF2:-2.37997674254;CDX1,2,4:-2.43019074416;ZBTB16:-2.50568375538;BPTF:-2.67436478872;PAX4:-2.68241926544;HMGA1,2:-2.70769965338;NKX2-1,4:-2.7762962283;GATA4:-2.85569157138
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11590-120G6;search_select_hide=table117:FF:11590-120G6
}}
}}

Latest revision as of 18:10, 4 June 2020

Name:Alveolar Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12084
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexNA
ageNA
cell typeepithelial cell of lung, small airway
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4978
catalog numberSC3205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005923
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12084 CAGE DRX008105 DRR008977
Accession ID Hg19

Library idBAMCTSS
CNhs12084 DRZ000402 DRZ001787
Accession ID Hg38

Library idBAMCTSS
CNhs12084 DRZ011752 DRZ013137
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005923
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.CTTGTA sRNA-Seq DRX036999 DRR041365
Accession ID Hg19

Library idBAMCTSS
SRhi10002.CTTGTA DRZ007007


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0233
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0972
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.23
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0936
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.473
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.246
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.34
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.83
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.23
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.059
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.596
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.23
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.652
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12084

Jaspar motifP-value
MA0002.20.729
MA0003.10.305
MA0004.10.822
MA0006.10.158
MA0007.10.0331
MA0009.10.475
MA0014.10.758
MA0017.10.171
MA0018.20.404
MA0019.10.0219
MA0024.10.936
MA0025.10.088
MA0027.10.937
MA0028.10.393
MA0029.10.0858
MA0030.10.995
MA0031.10.19
MA0035.20.0243
MA0038.10.251
MA0039.20.0175
MA0040.10.961
MA0041.10.206
MA0042.10.863
MA0043.10.545
MA0046.10.0115
MA0047.20.255
MA0048.10.979
MA0050.13.88392e-4
MA0051.10.0625
MA0052.10.0432
MA0055.10.025
MA0057.10.297
MA0058.10.793
MA0059.10.506
MA0060.13.6942e-5
MA0061.10.696
MA0062.20.2
MA0065.20.0281
MA0066.10.746
MA0067.10.29
MA0068.10.301
MA0069.10.581
MA0070.10.0534
MA0071.10.413
MA0072.10.932
MA0073.10.911
MA0074.10.325
MA0076.10.595
MA0077.10.461
MA0078.10.857
MA0079.20.261
MA0080.20.0106
MA0081.10.25
MA0083.10.00442
MA0084.10.108
MA0087.10.567
MA0088.10.793
MA0090.10.00586
MA0091.10.529
MA0092.10.876
MA0093.10.851
MA0099.20.00397
MA0100.10.0666
MA0101.10.577
MA0102.20.0707
MA0103.13.2009e-6
MA0104.20.636
MA0105.10.65
MA0106.10.234
MA0107.10.506
MA0108.25.12514e-13
MA0111.10.131
MA0112.20.123
MA0113.10.572
MA0114.10.088
MA0115.10.6
MA0116.10.793
MA0117.10.405
MA0119.10.827
MA0122.10.65
MA0124.10.914
MA0125.10.406
MA0131.10.145
MA0135.10.0383
MA0136.10.0536
MA0137.20.0668
MA0138.20.49
MA0139.10.302
MA0140.10.851
MA0141.10.0582
MA0142.10.162
MA0143.10.0463
MA0144.10.829
MA0145.10.0555
MA0146.10.0142
MA0147.10.719
MA0148.10.443
MA0149.10.349
MA0150.10.501
MA0152.10.162
MA0153.10.0203
MA0154.10.458
MA0155.10.114
MA0156.10.753
MA0157.10.0648
MA0159.10.0994
MA0160.10.212
MA0162.10.183
MA0163.10.885
MA0164.10.867
MA0258.10.255
MA0259.10.493



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12084

Novel motifP-value
10.617
100.281
1000.277
1010.0313
1020.295
1030.59
1040.833
1050.131
1060.184
1070.0896
1080.533
1090.00374
110.367
1100.289
1110.376
1120.788
1130.542
1140.379
1150.0334
1160.517
1170.582
1180.649
1190.613
120.363
1200.617
1210.478
1220.0992
1230.00472
1240.0326
1250.162
1260.666
1270.55
1280.806
1290.231
130.143
1300.434
1310.665
1320.124
1330.264
1340.986
1350.154
1360.0217
1370.0377
1380.0778
1390.223
140.749
1400.629
1410.269
1420.233
1430.928
1440.292
1450.878
1460.0939
1470.762
1480.00384
1490.142
150.317
1500.292
1510.64
1520.0348
1530.0452
1540.339
1550.237
1560.555
1570.47
1580.628
1590.441
160.519
1600.229
1610.856
1620.668
1630.518
1640.894
1650.0949
1660.149
1670.0593
1680.621
1690.107
170.29
180.94
190.516
20.161
200.902
210.554
220.169
230.925
240.823
250.366
260.101
270.373
280.335
290.553
30.52
300.0547
310.484
320.323
330.282
340.238
350.0728
360.849
370.385
380.259
390.757
40.543
400.00643
410.354
420.586
430.904
440.727
450.221
460.762
470.663
480.459
490.417
50.0809
500.292
510.675
520.477
530.297
540.922
550.138
560.466
570.431
580.274
590.0403
60.442
600.574
610.377
620.136
630.497
640.405
650.152
660.477
670.96
680.127
690.0397
70.79
700.84
710.929
720.63
730.0121
740.091
750.545
760.276
770.00237
780.639
790.519
80.48
800.455
810.0402
820.437
830.618
840.786
850.93
860.906
870.0254
880.651
890.29
90.577
903.32272e-4
910.851
920.318
930.442
940.32
950.0106
960.581
970.914
980.703
990.0952



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12084


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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