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(Created page with "{{f5samples |id=FF:11609-120I7 |name=Lens Epithelial Cells, donor2 |sample_id=11609 |rna_tube_id=120I7 |rna_box=120 |rna_position=I7 |sample_cell_lot=N/A |sample_cell_...")
 
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{{f5samples
{{f5samples
|id=FF:11609-120I7
|DRA_sample_Accession=CAGE@SAMD00005741
|name=Lens Epithelial Cells, donor2
|accession_numbers=CAGE;DRX008320;DRR009192;DRZ000617;DRZ002002;DRZ011967;DRZ013352
|sample_id=11609
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230
|rna_tube_id=120I7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
|rna_box=120
|rna_position=I7
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=1357.00000
|rna_catalog_number=SC6555
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=eye
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=lens epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.33400
|sample_note=
|profile_hcage=CNhs12568,LSID917,release011,MAPPING
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000075,CL:0000144,CL:0000255,CL:0000306,CL:0000325,CL:0000548,CL:0002222,CL:0002224,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000076,UBERON:0000119,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000484,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000965,UBERON:0000970,UBERON:0001032,UBERON:0001048,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001801,UBERON:0001803,UBERON:0002050,UBERON:0002104,UBERON:0002532,UBERON:0002546,UBERON:0003073,UBERON:0004121,UBERON:0004456,UBERON:0005085,UBERON:0005389,UBERON:0005423,UBERON:0005426,UBERON:0007625
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000085
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002224;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg38.nobarcode.ctss.bed.gz
|id=FF:11609-120I7
|is_a=EFO:0002091;;FF:0000085
|is_obsolete=
|library_id=CNhs12568
|library_id_phase_based=2:CNhs12568
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11609
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11609
|name=Lens Epithelial Cells, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12568,LSID917,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=120
|rna_catalog_number=SC6555
|rna_concentration=0.334
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=1357
|rna_od260/230=
|rna_od260/280=
|rna_position=I7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=120I7
|rna_weight_ug=10
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=lens epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.11217466408709e-242!GO:0005737;cytoplasm;1.65562217830587e-191!GO:0043226;organelle;4.71217519192552e-191!GO:0043229;intracellular organelle;9.02031497244745e-191!GO:0043231;intracellular membrane-bound organelle;1.07676529275933e-189!GO:0043227;membrane-bound organelle;2.43959706056019e-189!GO:0044422;organelle part;1.10124363740392e-138!GO:0044446;intracellular organelle part;3.02581538974919e-137!GO:0044444;cytoplasmic part;7.28061788919913e-130!GO:0032991;macromolecular complex;1.57593307005258e-97!GO:0030529;ribonucleoprotein complex;2.93904716813774e-80!GO:0044238;primary metabolic process;5.51583696228987e-79!GO:0044237;cellular metabolic process;5.51583696228987e-79!GO:0005515;protein binding;6.37883180818932e-79!GO:0005634;nucleus;4.92969796973485e-74!GO:0043170;macromolecule metabolic process;2.00822928767616e-70!GO:0043233;organelle lumen;3.85993744564777e-67!GO:0031974;membrane-enclosed lumen;3.85993744564777e-67!GO:0044428;nuclear part;6.74249696927158e-66!GO:0003723;RNA binding;2.51541959186951e-64!GO:0016043;cellular component organization and biogenesis;4.4617760370526e-59!GO:0005739;mitochondrion;4.81770124664255e-59!GO:0043234;protein complex;2.20411507522096e-50!GO:0031090;organelle membrane;4.09114545691358e-49!GO:0005840;ribosome;3.7316519833625e-47!GO:0033036;macromolecule localization;3.17339293920234e-45!GO:0015031;protein transport;1.21213043157287e-44!GO:0006396;RNA processing;1.06874427766971e-41!GO:0044429;mitochondrial part;2.09456668534789e-41!GO:0008104;protein localization;2.6235310806593e-41!GO:0003735;structural constituent of ribosome;2.83229673718667e-41!GO:0045184;establishment of protein localization;5.17143921299316e-41!GO:0043283;biopolymer metabolic process;7.99605294492998e-41!GO:0006412;translation;2.00116575195787e-40!GO:0019538;protein metabolic process;7.36010450155622e-40!GO:0031981;nuclear lumen;3.0273607710208e-39!GO:0016071;mRNA metabolic process;7.95447915028934e-39!GO:0031967;organelle envelope;1.89093713763274e-37!GO:0031975;envelope;3.40834472063426e-37!GO:0010467;gene expression;6.15424087909082e-37!GO:0033279;ribosomal subunit;6.47925123062996e-37!GO:0008380;RNA splicing;1.99349302336895e-36!GO:0005829;cytosol;5.58339822778053e-36!GO:0046907;intracellular transport;8.64878302627076e-36!GO:0044260;cellular macromolecule metabolic process;2.16439715836477e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.26720582147631e-35!GO:0009058;biosynthetic process;4.92486550524039e-35!GO:0006996;organelle organization and biogenesis;6.87995514092423e-35!GO:0044267;cellular protein metabolic process;9.28569286965865e-35!GO:0065003;macromolecular complex assembly;1.91751758924788e-33!GO:0006397;mRNA processing;2.75854786728012e-33!GO:0044249;cellular biosynthetic process;3.44828276648654e-32!GO:0043228;non-membrane-bound organelle;2.51997119421858e-31!GO:0043232;intracellular non-membrane-bound organelle;2.51997119421858e-31!GO:0009059;macromolecule biosynthetic process;2.53689827339956e-31!GO:0022607;cellular component assembly;3.72589775525014e-30!GO:0006886;intracellular protein transport;8.68858631407056e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.49054291183247e-27!GO:0006259;DNA metabolic process;3.5224156913184e-26!GO:0005740;mitochondrial envelope;5.31162085172769e-26!GO:0005654;nucleoplasm;1.98700618790361e-25!GO:0005681;spliceosome;3.35595947864681e-25!GO:0019866;organelle inner membrane;1.80685490628499e-24!GO:0031966;mitochondrial membrane;2.14248964933386e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.63415443563142e-24!GO:0051641;cellular localization;4.81187975082066e-24!GO:0051649;establishment of cellular localization;5.21229435784232e-24!GO:0005743;mitochondrial inner membrane;2.60299769191674e-22!GO:0006119;oxidative phosphorylation;2.85590354483632e-22!GO:0044445;cytosolic part;7.80692502152037e-22!GO:0006457;protein folding;1.64105786508343e-21!GO:0003676;nucleic acid binding;2.52415805638513e-21!GO:0044451;nucleoplasm part;2.89707971199872e-21!GO:0012505;endomembrane system;3.13632721981965e-21!GO:0048770;pigment granule;6.29583366394318e-20!GO:0042470;melanosome;6.29583366394318e-20!GO:0007049;cell cycle;4.11153466893784e-19!GO:0015935;small ribosomal subunit;6.45146770434902e-19!GO:0044455;mitochondrial membrane part;7.22301956610197e-19!GO:0015934;large ribosomal subunit;7.37488092958658e-19!GO:0031980;mitochondrial lumen;3.13058710768357e-18!GO:0005759;mitochondrial matrix;3.13058710768357e-18!GO:0000166;nucleotide binding;3.80857242850644e-18!GO:0005783;endoplasmic reticulum;4.54959843895392e-18!GO:0016462;pyrophosphatase activity;5.58403161651172e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.77503920418406e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;8.02556229676347e-18!GO:0022618;protein-RNA complex assembly;1.64595237010481e-17!GO:0017111;nucleoside-triphosphatase activity;4.03593550331097e-17!GO:0005794;Golgi apparatus;5.19879575531796e-17!GO:0016070;RNA metabolic process;2.33326048082007e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.43217262708108e-16!GO:0000502;proteasome complex (sensu Eukaryota);6.4084411569716e-16!GO:0005746;mitochondrial respiratory chain;7.11072341229646e-16!GO:0044265;cellular macromolecule catabolic process;7.11072341229646e-16!GO:0051276;chromosome organization and biogenesis;7.11072341229646e-16!GO:0016874;ligase activity;4.43517045088833e-15!GO:0006512;ubiquitin cycle;7.2227314660605e-15!GO:0051082;unfolded protein binding;1.02353778204506e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.02353778204506e-14!GO:0003954;NADH dehydrogenase activity;1.02353778204506e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02353778204506e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.18328802060929e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.32580961678307e-14!GO:0044432;endoplasmic reticulum part;1.34952895489493e-14!GO:0000278;mitotic cell cycle;2.10364834526092e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.16630121994844e-14!GO:0005694;chromosome;2.45555087669365e-14!GO:0019941;modification-dependent protein catabolic process;2.64057072992e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.64057072992e-14!GO:0016192;vesicle-mediated transport;3.38985319991863e-14!GO:0044257;cellular protein catabolic process;4.32484569226765e-14!GO:0006323;DNA packaging;6.0571379133272e-14!GO:0044248;cellular catabolic process;7.42049640738426e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.63439786480281e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.549250221935e-14!GO:0008135;translation factor activity, nucleic acid binding;9.76788165511982e-14!GO:0005761;mitochondrial ribosome;1.01141754942972e-13!GO:0000313;organellar ribosome;1.01141754942972e-13!GO:0022402;cell cycle process;1.47655946953985e-13!GO:0009057;macromolecule catabolic process;1.69096971876696e-13!GO:0044427;chromosomal part;1.77995868861515e-13!GO:0043285;biopolymer catabolic process;2.05495084338624e-13!GO:0008134;transcription factor binding;3.0813755683737e-13!GO:0048193;Golgi vesicle transport;4.41308949371667e-13!GO:0051186;cofactor metabolic process;6.5407462901414e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.89162960872664e-13!GO:0042773;ATP synthesis coupled electron transport;6.89162960872664e-13!GO:0005730;nucleolus;7.72612963437663e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.73619472661661e-13!GO:0045271;respiratory chain complex I;8.73619472661661e-13!GO:0005747;mitochondrial respiratory chain complex I;8.73619472661661e-13!GO:0006605;protein targeting;1.21461054516767e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.21461054516767e-12!GO:0005635;nuclear envelope;1.37784027599944e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.55524224166061e-12!GO:0000375;RNA splicing, via transesterification reactions;1.55524224166061e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.55524224166061e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.31408974819199e-12!GO:0030163;protein catabolic process;2.91355510259846e-12!GO:0032553;ribonucleotide binding;5.34783404782816e-12!GO:0032555;purine ribonucleotide binding;5.34783404782816e-12!GO:0006974;response to DNA damage stimulus;6.36777192762667e-12!GO:0031965;nuclear membrane;1.06948207258152e-11!GO:0065004;protein-DNA complex assembly;2.19698215465116e-11!GO:0006413;translational initiation;2.90319428607046e-11!GO:0017076;purine nucleotide binding;3.60828482180776e-11!GO:0006333;chromatin assembly or disassembly;4.67883836067325e-11!GO:0003743;translation initiation factor activity;5.24211647967071e-11!GO:0000087;M phase of mitotic cell cycle;5.30518749209615e-11!GO:0043412;biopolymer modification;7.48616101273266e-11!GO:0007067;mitosis;8.51691679457692e-11!GO:0044453;nuclear membrane part;8.8645178723282e-11!GO:0051301;cell division;8.9304720819844e-11!GO:0000785;chromatin;1.08265187565343e-10!GO:0006163;purine nucleotide metabolic process;1.19395923570265e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.21783496408762e-10!GO:0006732;coenzyme metabolic process;1.45184620642707e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.61176970832417e-10!GO:0016604;nuclear body;1.61915087927031e-10!GO:0009259;ribonucleotide metabolic process;2.36711638794963e-10!GO:0008565;protein transporter activity;3.29551187165719e-10!GO:0006164;purine nucleotide biosynthetic process;3.29551187165719e-10!GO:0005789;endoplasmic reticulum membrane;3.91251210807405e-10!GO:0006446;regulation of translational initiation;3.93101883945908e-10!GO:0009150;purine ribonucleotide metabolic process;4.23493227119058e-10!GO:0006281;DNA repair;5.96170045375937e-10!GO:0006464;protein modification process;6.02418253484289e-10!GO:0005793;ER-Golgi intermediate compartment;8.45820832741711e-10!GO:0022403;cell cycle phase;9.43248603090224e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.11770283766934e-09!GO:0009055;electron carrier activity;1.21517749476237e-09!GO:0015630;microtubule cytoskeleton;1.21677574040598e-09!GO:0006334;nucleosome assembly;1.41094216035438e-09!GO:0003924;GTPase activity;1.46416243130413e-09!GO:0048475;coated membrane;1.60883760439283e-09!GO:0030117;membrane coat;1.60883760439283e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.42392344283115e-09!GO:0009260;ribonucleotide biosynthetic process;2.53323354085505e-09!GO:0031497;chromatin assembly;5.3157972602902e-09!GO:0048523;negative regulation of cellular process;6.8069682029516e-09!GO:0016607;nuclear speck;7.429365304456e-09!GO:0006461;protein complex assembly;7.63587858021505e-09!GO:0009060;aerobic respiration;8.15377934925133e-09!GO:0009719;response to endogenous stimulus;8.15377934925133e-09!GO:0006913;nucleocytoplasmic transport;9.01899386753146e-09!GO:0031988;membrane-bound vesicle;9.58815130640551e-09!GO:0045333;cellular respiration;1.00448885865457e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.01970478690962e-08!GO:0050794;regulation of cellular process;1.07351636818675e-08!GO:0015986;ATP synthesis coupled proton transport;1.17300511432237e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.17300511432237e-08!GO:0009141;nucleoside triphosphate metabolic process;1.74165322536564e-08!GO:0005768;endosome;1.95488015757887e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.11739604022531e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.29222039973106e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.29222039973106e-08!GO:0051169;nuclear transport;2.3479689806878e-08!GO:0043687;post-translational protein modification;2.72940488140062e-08!GO:0005643;nuclear pore;2.76728874546302e-08!GO:0005524;ATP binding;2.87992450010126e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.01445289222845e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.01445289222845e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.18241637891281e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.18241637891281e-08!GO:0003712;transcription cofactor activity;3.38958489090661e-08!GO:0012501;programmed cell death;3.74164613407204e-08!GO:0030120;vesicle coat;3.90848683653763e-08!GO:0030662;coated vesicle membrane;3.90848683653763e-08!GO:0006403;RNA localization;4.32623540609776e-08!GO:0042254;ribosome biogenesis and assembly;4.68690261510698e-08!GO:0009056;catabolic process;4.77550604911232e-08!GO:0050657;nucleic acid transport;4.7898188832145e-08!GO:0051236;establishment of RNA localization;4.7898188832145e-08!GO:0050658;RNA transport;4.7898188832145e-08!GO:0032559;adenyl ribonucleotide binding;5.18158007933018e-08!GO:0006915;apoptosis;5.21423433118644e-08!GO:0031982;vesicle;5.43524866250037e-08!GO:0042623;ATPase activity, coupled;5.61603483730905e-08!GO:0044431;Golgi apparatus part;5.69359108460943e-08!GO:0031410;cytoplasmic vesicle;6.13117892468206e-08!GO:0006260;DNA replication;6.82639687807968e-08!GO:0008639;small protein conjugating enzyme activity;6.87840529138843e-08!GO:0006366;transcription from RNA polymerase II promoter;7.34632140423143e-08!GO:0019829;cation-transporting ATPase activity;7.67991005544192e-08!GO:0000279;M phase;8.2897890360951e-08!GO:0004842;ubiquitin-protein ligase activity;8.83592910848752e-08!GO:0019787;small conjugating protein ligase activity;9.88829667656167e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.000883573001e-07!GO:0051726;regulation of cell cycle;1.04956210306917e-07!GO:0000074;regulation of progression through cell cycle;1.18432502642454e-07!GO:0016887;ATPase activity;1.27595740953444e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.51698768457409e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.5540318221981e-07!GO:0046034;ATP metabolic process;2.72089596539415e-07!GO:0030554;adenyl nucleotide binding;3.00235438528298e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.00235438528298e-07!GO:0006099;tricarboxylic acid cycle;3.14302597133712e-07!GO:0046356;acetyl-CoA catabolic process;3.14302597133712e-07!GO:0006754;ATP biosynthetic process;3.1721101340521e-07!GO:0006753;nucleoside phosphate metabolic process;3.1721101340521e-07!GO:0048519;negative regulation of biological process;3.23559153031781e-07!GO:0065002;intracellular protein transport across a membrane;3.9743214037976e-07!GO:0043566;structure-specific DNA binding;4.07562424734839e-07!GO:0008219;cell death;4.3384993844027e-07!GO:0016265;death;4.3384993844027e-07!GO:0017038;protein import;4.34711077098717e-07!GO:0004386;helicase activity;4.71848538740301e-07!GO:0050789;regulation of biological process;4.90335790469689e-07!GO:0005525;GTP binding;5.87059756879146e-07!GO:0005667;transcription factor complex;5.97356550003942e-07!GO:0016568;chromatin modification;7.38204664922106e-07!GO:0009117;nucleotide metabolic process;8.65715111223761e-07!GO:0016881;acid-amino acid ligase activity;9.43840334070716e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.05356514537762e-06!GO:0006084;acetyl-CoA metabolic process;1.10759460336051e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.17863601761486e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.23433579332166e-06!GO:0051028;mRNA transport;1.89055802887718e-06!GO:0003697;single-stranded DNA binding;2.25305603470324e-06!GO:0031252;leading edge;2.31703556489347e-06!GO:0016853;isomerase activity;2.40213543367481e-06!GO:0005788;endoplasmic reticulum lumen;2.41460545806354e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.86409813509141e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.86409813509141e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.86409813509141e-06!GO:0051188;cofactor biosynthetic process;3.03737799914669e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.12458085668928e-06!GO:0000245;spliceosome assembly;3.35131492644963e-06!GO:0046930;pore complex;3.59499326368629e-06!GO:0007005;mitochondrion organization and biogenesis;3.69516550617611e-06!GO:0044440;endosomal part;3.69722521588247e-06!GO:0010008;endosome membrane;3.69722521588247e-06!GO:0008026;ATP-dependent helicase activity;3.86952297626146e-06!GO:0043038;amino acid activation;4.02533561629905e-06!GO:0006418;tRNA aminoacylation for protein translation;4.02533561629905e-06!GO:0043039;tRNA aminoacylation;4.02533561629905e-06!GO:0009109;coenzyme catabolic process;4.18596673186719e-06!GO:0006399;tRNA metabolic process;4.7160565925416e-06!GO:0005798;Golgi-associated vesicle;4.83926343469805e-06!GO:0045259;proton-transporting ATP synthase complex;5.01435590875746e-06!GO:0016126;sterol biosynthetic process;5.56674737075009e-06!GO:0006916;anti-apoptosis;5.64459499934414e-06!GO:0015078;hydrogen ion transmembrane transporter activity;5.9514326640405e-06!GO:0043069;negative regulation of programmed cell death;6.01030036464032e-06!GO:0032561;guanyl ribonucleotide binding;6.6994250070564e-06!GO:0019001;guanyl nucleotide binding;6.6994250070564e-06!GO:0048471;perinuclear region of cytoplasm;7.02784237365645e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.47604004871015e-06!GO:0000139;Golgi membrane;7.59912503131381e-06!GO:0051187;cofactor catabolic process;7.96456232090936e-06!GO:0043066;negative regulation of apoptosis;8.0102071916826e-06!GO:0007010;cytoskeleton organization and biogenesis;8.02304662890874e-06!GO:0006613;cotranslational protein targeting to membrane;9.39377231474798e-06!GO:0051246;regulation of protein metabolic process;9.40131471223295e-06!GO:0005905;coated pit;1.05889071079038e-05!GO:0016859;cis-trans isomerase activity;1.07079956186194e-05!GO:0004298;threonine endopeptidase activity;1.08794355842606e-05!GO:0032446;protein modification by small protein conjugation;1.12095313578165e-05!GO:0030118;clathrin coat;1.2081558530648e-05!GO:0031324;negative regulation of cellular metabolic process;1.22396800649704e-05!GO:0006752;group transfer coenzyme metabolic process;1.25600713079466e-05!GO:0008654;phospholipid biosynthetic process;1.45443203516088e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.61101275282057e-05!GO:0005773;vacuole;1.71093443585588e-05!GO:0016567;protein ubiquitination;2.42657942772356e-05!GO:0043623;cellular protein complex assembly;2.70420861901945e-05!GO:0005770;late endosome;2.97441381452771e-05!GO:0006364;rRNA processing;3.37381710770088e-05!GO:0009892;negative regulation of metabolic process;3.69915016422606e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.17416752344685e-05!GO:0005762;mitochondrial large ribosomal subunit;4.22673592780586e-05!GO:0000315;organellar large ribosomal subunit;4.22673592780586e-05!GO:0016481;negative regulation of transcription;4.30248042915586e-05!GO:0003724;RNA helicase activity;4.56082795703546e-05!GO:0000786;nucleosome;4.56719031290469e-05!GO:0016564;transcription repressor activity;4.6246041508203e-05!GO:0042981;regulation of apoptosis;4.71119959693132e-05!GO:0006793;phosphorus metabolic process;4.79004420965706e-05!GO:0006796;phosphate metabolic process;4.79004420965706e-05!GO:0006695;cholesterol biosynthetic process;5.0895500727398e-05!GO:0043067;regulation of programmed cell death;5.18801998805768e-05!GO:0016072;rRNA metabolic process;5.22456901762232e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.79627151847536e-05!GO:0005874;microtubule;5.96280017254805e-05!GO:0051427;hormone receptor binding;6.01385199467532e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.57503887799859e-05!GO:0009108;coenzyme biosynthetic process;6.66292203321577e-05!GO:0030867;rough endoplasmic reticulum membrane;7.15523403286845e-05!GO:0008092;cytoskeletal protein binding;7.73737783399111e-05!GO:0005769;early endosome;8.34673544262098e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.73145867001371e-05!GO:0042802;identical protein binding;9.48683483636008e-05!GO:0005819;spindle;9.84928050570201e-05!GO:0051170;nuclear import;0.000103277887497147!GO:0005791;rough endoplasmic reticulum;0.000108369706289893!GO:0000151;ubiquitin ligase complex;0.000109622268984416!GO:0035257;nuclear hormone receptor binding;0.000124713422793355!GO:0030133;transport vesicle;0.000126136002217554!GO:0016740;transferase activity;0.000126374921085074!GO:0006606;protein import into nucleus;0.00013275531291659!GO:0016363;nuclear matrix;0.000133820916965716!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000133820916965716!GO:0005813;centrosome;0.000144020411869894!GO:0007264;small GTPase mediated signal transduction;0.000144560314201562!GO:0000323;lytic vacuole;0.000154104003636637!GO:0005764;lysosome;0.000154104003636637!GO:0043021;ribonucleoprotein binding;0.000155767491767372!GO:0008361;regulation of cell size;0.00016136449806808!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000161984053632009!GO:0045786;negative regulation of progression through cell cycle;0.000172860615041185!GO:0003714;transcription corepressor activity;0.000197065310242981!GO:0016491;oxidoreductase activity;0.000211658621092212!GO:0019222;regulation of metabolic process;0.000222209753651081!GO:0030119;AP-type membrane coat adaptor complex;0.000225172936755412!GO:0016049;cell growth;0.000233269490856815!GO:0000314;organellar small ribosomal subunit;0.000239181565058226!GO:0005763;mitochondrial small ribosomal subunit;0.000239181565058226!GO:0016310;phosphorylation;0.000257556953302118!GO:0003713;transcription coactivator activity;0.000270474389598528!GO:0016044;membrane organization and biogenesis;0.000283303999382041!GO:0030036;actin cytoskeleton organization and biogenesis;0.000287269488240473!GO:0045454;cell redox homeostasis;0.000292660107061523!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000295644744046647!GO:0005815;microtubule organizing center;0.00030168944287913!GO:0007051;spindle organization and biogenesis;0.000309442687480429!GO:0033116;ER-Golgi intermediate compartment membrane;0.000328547955386937!GO:0030131;clathrin adaptor complex;0.000356162087243498!GO:0008250;oligosaccharyl transferase complex;0.00037359897385271!GO:0051329;interphase of mitotic cell cycle;0.000410261949674164!GO:0015631;tubulin binding;0.000435453644230386!GO:0000902;cell morphogenesis;0.000445752970166136!GO:0032989;cellular structure morphogenesis;0.000445752970166136!GO:0031968;organelle outer membrane;0.000475510164103404!GO:0030658;transport vesicle membrane;0.000479258400519415!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000491720841720617!GO:0048468;cell development;0.000520158509513855!GO:0001558;regulation of cell growth;0.000524707160400781!GO:0051168;nuclear export;0.000527984900477208!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000538308530670355!GO:0005048;signal sequence binding;0.000566701684617201!GO:0005885;Arp2/3 protein complex;0.000584987648776993!GO:0003729;mRNA binding;0.000605084120979697!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00060527921788187!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000623845917523934!GO:0051920;peroxiredoxin activity;0.000664199372713231!GO:0006612;protein targeting to membrane;0.000723342423795709!GO:0019867;outer membrane;0.000727726221847169!GO:0009165;nucleotide biosynthetic process;0.000770143890746177!GO:0016563;transcription activator activity;0.000809936888099865!GO:0004576;oligosaccharyl transferase activity;0.000814497874067697!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00084030218578911!GO:0019899;enzyme binding;0.000849117614003058!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000915832303069476!GO:0008186;RNA-dependent ATPase activity;0.000962401873404383!GO:0046474;glycerophospholipid biosynthetic process;0.00100463824852037!GO:0003690;double-stranded DNA binding;0.00105091324550016!GO:0016787;hydrolase activity;0.00110308884735703!GO:0030660;Golgi-associated vesicle membrane;0.00114501862296375!GO:0018196;peptidyl-asparagine modification;0.00117411070125599!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00117411070125599!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.001280486429695!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00128229199888717!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00128229199888717!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00128229199888717!GO:0051325;interphase;0.00131029628125182!GO:0001726;ruffle;0.00138723191245298!GO:0044262;cellular carbohydrate metabolic process;0.00142156579372403!GO:0065007;biological regulation;0.00144580236263284!GO:0008610;lipid biosynthetic process;0.00145062445961393!GO:0005741;mitochondrial outer membrane;0.00147901364474222!GO:0016779;nucleotidyltransferase activity;0.00148196706720502!GO:0051789;response to protein stimulus;0.00149419969913234!GO:0006986;response to unfolded protein;0.00149419969913234!GO:0006402;mRNA catabolic process;0.00152767194090551!GO:0046467;membrane lipid biosynthetic process;0.00152767194090551!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00155908421455325!GO:0030029;actin filament-based process;0.00187521901946096!GO:0007017;microtubule-based process;0.00197046093135804!GO:0006261;DNA-dependent DNA replication;0.00208030693167977!GO:0031072;heat shock protein binding;0.00214191094480643!GO:0043681;protein import into mitochondrion;0.00219136181544546!GO:0006650;glycerophospholipid metabolic process;0.00221189596976985!GO:0006414;translational elongation;0.00221318503313314!GO:0006383;transcription from RNA polymerase III promoter;0.00230334955312425!GO:0051087;chaperone binding;0.00235734832130524!GO:0006007;glucose catabolic process;0.00256653943131893!GO:0004004;ATP-dependent RNA helicase activity;0.00260840619850497!GO:0048500;signal recognition particle;0.00275109602542734!GO:0006891;intra-Golgi vesicle-mediated transport;0.00285248105497731!GO:0030027;lamellipodium;0.00290390155747623!GO:0003899;DNA-directed RNA polymerase activity;0.00293204227481583!GO:0030125;clathrin vesicle coat;0.00294854181196239!GO:0030665;clathrin coated vesicle membrane;0.00294854181196239!GO:0031124;mRNA 3'-end processing;0.00297650064196008!GO:0048487;beta-tubulin binding;0.00301183363629519!GO:0005637;nuclear inner membrane;0.00309174838744525!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00313877318796294!GO:0045892;negative regulation of transcription, DNA-dependent;0.00319650945984445!GO:0019843;rRNA binding;0.00359528967960797!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0036085699109019!GO:0030663;COPI coated vesicle membrane;0.00365894616020999!GO:0030126;COPI vesicle coat;0.00365894616020999!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00368655036270851!GO:0030659;cytoplasmic vesicle membrane;0.00375388458922413!GO:0045045;secretory pathway;0.00375388458922413!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00385195267773441!GO:0003682;chromatin binding;0.0038937422322819!GO:0043488;regulation of mRNA stability;0.00397031891087618!GO:0043487;regulation of RNA stability;0.00397031891087618!GO:0000075;cell cycle checkpoint;0.0040278325394542!GO:0044433;cytoplasmic vesicle part;0.00416289483308101!GO:0000775;chromosome, pericentric region;0.00416662752410951!GO:0051287;NAD binding;0.00418412759373151!GO:0051252;regulation of RNA metabolic process;0.00428313431045604!GO:0000059;protein import into nucleus, docking;0.00434709704008977!GO:0006643;membrane lipid metabolic process;0.0045309322300974!GO:0030521;androgen receptor signaling pathway;0.00456846877125751!GO:0046489;phosphoinositide biosynthetic process;0.00472489524744201!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00473750891268605!GO:0005869;dynactin complex;0.00481390029727393!GO:0008180;signalosome;0.00500871272482117!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00527515965309814!GO:0015399;primary active transmembrane transporter activity;0.00527515965309814!GO:0006338;chromatin remodeling;0.00549304530910411!GO:0008139;nuclear localization sequence binding;0.00551014636501843!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00559971088561809!GO:0045047;protein targeting to ER;0.00559971088561809!GO:0007052;mitotic spindle organization and biogenesis;0.00559971088561809!GO:0000118;histone deacetylase complex;0.0056072918505359!GO:0012506;vesicle membrane;0.00566837192808145!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00585318278184175!GO:0006626;protein targeting to mitochondrion;0.00585318278184175!GO:0006352;transcription initiation;0.00595194947324069!GO:0000776;kinetochore;0.00646654703949089!GO:0008312;7S RNA binding;0.00666066724853977!GO:0008286;insulin receptor signaling pathway;0.00675571333674728!GO:0030132;clathrin coat of coated pit;0.00689814622387526!GO:0030134;ER to Golgi transport vesicle;0.00733476798111024!GO:0005657;replication fork;0.00738113319770139!GO:0006509;membrane protein ectodomain proteolysis;0.00738113319770139!GO:0033619;membrane protein proteolysis;0.00738113319770139!GO:0006740;NADPH regeneration;0.00751224757961678!GO:0006098;pentose-phosphate shunt;0.00751224757961678!GO:0006839;mitochondrial transport;0.00751224757961678!GO:0030137;COPI-coated vesicle;0.00758524146617798!GO:0007006;mitochondrial membrane organization and biogenesis;0.0076582447376618!GO:0005684;U2-dependent spliceosome;0.0083159825803084!GO:0003684;damaged DNA binding;0.0083555402232465!GO:0031123;RNA 3'-end processing;0.0084548199358811!GO:0035258;steroid hormone receptor binding;0.00854622055740678!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0085700756429616!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0085700756429616!GO:0031901;early endosome membrane;0.00884870086295795!GO:0022890;inorganic cation transmembrane transporter activity;0.00884870086295795!GO:0006401;RNA catabolic process;0.00889609064328113!GO:0015992;proton transport;0.00889980932433888!GO:0017166;vinculin binding;0.00895680544730122!GO:0045893;positive regulation of transcription, DNA-dependent;0.00922884603464008!GO:0031323;regulation of cellular metabolic process;0.00935551459970526!GO:0040008;regulation of growth;0.00987460886924078!GO:0006818;hydrogen transport;0.010080579068762!GO:0030127;COPII vesicle coat;0.010080579068762!GO:0012507;ER to Golgi transport vesicle membrane;0.010080579068762!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0102531877774633!GO:0043284;biopolymer biosynthetic process;0.0107656035698861!GO:0003711;transcription elongation regulator activity;0.0109723941245185!GO:0051128;regulation of cellular component organization and biogenesis;0.01102051270597!GO:0007040;lysosome organization and biogenesis;0.011372845553924!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0119830392925811!GO:0007021;tubulin folding;0.0122224346579145!GO:0003746;translation elongation factor activity;0.0124059031597728!GO:0006378;mRNA polyadenylation;0.0128624537656165!GO:0007033;vacuole organization and biogenesis;0.0130856870407216!GO:0016197;endosome transport;0.0131819432358817!GO:0006350;transcription;0.0132833774019876!GO:0030384;phosphoinositide metabolic process;0.0132953266416712!GO:0008022;protein C-terminus binding;0.0133772018069621!GO:0016584;nucleosome positioning;0.0137223783513267!GO:0050750;low-density lipoprotein receptor binding;0.013881930646787!GO:0005832;chaperonin-containing T-complex;0.0139272350852723!GO:0006405;RNA export from nucleus;0.0139681284935014!GO:0016125;sterol metabolic process;0.0140607700471661!GO:0007093;mitotic cell cycle checkpoint;0.0145141513306181!GO:0030176;integral to endoplasmic reticulum membrane;0.0150581109498684!GO:0006897;endocytosis;0.0153253840695899!GO:0010324;membrane invagination;0.0153253840695899!GO:0043624;cellular protein complex disassembly;0.0160041337103328!GO:0031543;peptidyl-proline dioxygenase activity;0.0160059609567072!GO:0008094;DNA-dependent ATPase activity;0.0160707278672482!GO:0007050;cell cycle arrest;0.0161172754500001!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163779078989685!GO:0005875;microtubule associated complex;0.0168012639672699!GO:0043130;ubiquitin binding;0.0168961126712167!GO:0032182;small conjugating protein binding;0.0168961126712167!GO:0006672;ceramide metabolic process;0.0169558875239301!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0169881699759552!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0170858174897559!GO:0055083;monovalent inorganic anion homeostasis;0.0170858174897559!GO:0055064;chloride ion homeostasis;0.0170858174897559!GO:0030644;cellular chloride ion homeostasis;0.0170858174897559!GO:0042393;histone binding;0.0171601020817624!GO:0032984;macromolecular complex disassembly;0.0172887359314639!GO:0050681;androgen receptor binding;0.0173530153684326!GO:0016251;general RNA polymerase II transcription factor activity;0.0176439878695195!GO:0065009;regulation of a molecular function;0.0180449086602087!GO:0046519;sphingoid metabolic process;0.0180611606436872!GO:0051052;regulation of DNA metabolic process;0.0181542081164648!GO:0003702;RNA polymerase II transcription factor activity;0.0182052604229508!GO:0031902;late endosome membrane;0.0188268829123076!GO:0000339;RNA cap binding;0.0194254087319007!GO:0005862;muscle thin filament tropomyosin;0.0194254087319007!GO:0016272;prefoldin complex;0.0196939313676128!GO:0006595;polyamine metabolic process;0.0199258542874732!GO:0005212;structural constituent of eye lens;0.0199342857736513!GO:0007088;regulation of mitosis;0.0199468417968926!GO:0006644;phospholipid metabolic process;0.0201672526958229!GO:0008097;5S rRNA binding;0.0202885579238127!GO:0007243;protein kinase cascade;0.0204396822988019!GO:0040029;regulation of gene expression, epigenetic;0.0212386991543227!GO:0006091;generation of precursor metabolites and energy;0.0212386991543227!GO:0000209;protein polyubiquitination;0.021337745087875!GO:0030032;lamellipodium biogenesis;0.0213824456348168!GO:0016408;C-acyltransferase activity;0.0214895063806886!GO:0030880;RNA polymerase complex;0.0217967516575262!GO:0043022;ribosome binding;0.0218347031599606!GO:0032906;transforming growth factor-beta2 production;0.0222377031900927!GO:0032909;regulation of transforming growth factor-beta2 production;0.0222377031900927!GO:0019798;procollagen-proline dioxygenase activity;0.0224998915503282!GO:0005938;cell cortex;0.0227704123113079!GO:0006720;isoprenoid metabolic process;0.0230436711802112!GO:0016860;intramolecular oxidoreductase activity;0.0230436711802112!GO:0050811;GABA receptor binding;0.0239113902427453!GO:0006302;double-strand break repair;0.0242646618025284!GO:0042158;lipoprotein biosynthetic process;0.0243298891328405!GO:0005876;spindle microtubule;0.0255105438162637!GO:0006289;nucleotide-excision repair;0.0261231542170281!GO:0051101;regulation of DNA binding;0.0265260372047341!GO:0045941;positive regulation of transcription;0.0266076303066251!GO:0008047;enzyme activator activity;0.0269236958652688!GO:0008017;microtubule binding;0.0272667963634736!GO:0031625;ubiquitin protein ligase binding;0.0275975305735594!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0277450775029115!GO:0032508;DNA duplex unwinding;0.0277450775029115!GO:0032392;DNA geometric change;0.0277450775029115!GO:0006376;mRNA splice site selection;0.0277953490896237!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0277953490896237!GO:0043492;ATPase activity, coupled to movement of substances;0.0282472326491122!GO:0006220;pyrimidine nucleotide metabolic process;0.0283970449095798!GO:0048522;positive regulation of cellular process;0.028592997008849!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.028720418011772!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0293637437496273!GO:0000082;G1/S transition of mitotic cell cycle;0.029878497772613!GO:0001666;response to hypoxia;0.0302789346628408!GO:0010468;regulation of gene expression;0.0308733570288973!GO:0006497;protein amino acid lipidation;0.0310256915608558!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0310679960279508!GO:0046365;monosaccharide catabolic process;0.0313689761339432!GO:0006144;purine base metabolic process;0.031699218184443!GO:0016407;acetyltransferase activity;0.0322746029322238!GO:0043241;protein complex disassembly;0.0322746029322238!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0327966766247287!GO:0006611;protein export from nucleus;0.0330496203330985!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0332795088861155!GO:0006739;NADP metabolic process;0.0334923424354799!GO:0031371;ubiquitin conjugating enzyme complex;0.0335773810084434!GO:0031970;organelle envelope lumen;0.0337685554845405!GO:0030140;trans-Golgi network transport vesicle;0.0337887339645159!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0342307793324261!GO:0006096;glycolysis;0.0345129052695363!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0347760142922526!GO:0005784;translocon complex;0.0347760142922526!GO:0051098;regulation of binding;0.0347760142922526!GO:0006730;one-carbon compound metabolic process;0.0363787557033715!GO:0009081;branched chain family amino acid metabolic process;0.0364472913235334!GO:0006268;DNA unwinding during replication;0.0364698838925943!GO:0006066;alcohol metabolic process;0.0367650799683018!GO:0000049;tRNA binding;0.0368055418582248!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0369145889071253!GO:0017134;fibroblast growth factor binding;0.0374598563570081!GO:0003678;DNA helicase activity;0.0374598563570081!GO:0000792;heterochromatin;0.0374797692494645!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0378372652484589!GO:0046164;alcohol catabolic process;0.0382776473869368!GO:0008154;actin polymerization and/or depolymerization;0.0383908062904219!GO:0005774;vacuolar membrane;0.0392144301773278!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0402725562645114!GO:0000428;DNA-directed RNA polymerase complex;0.0402725562645114!GO:0051539;4 iron, 4 sulfur cluster binding;0.042128830297921!GO:0007059;chromosome segregation;0.0422718818585433!GO:0016585;chromatin remodeling complex;0.0435232058909385!GO:0033673;negative regulation of kinase activity;0.0437256306315271!GO:0006469;negative regulation of protein kinase activity;0.0437256306315271!GO:0030496;midbody;0.0446263801106128!GO:0005996;monosaccharide metabolic process;0.044860820595266!GO:0043631;RNA polyadenylation;0.044860820595266!GO:0008538;proteasome activator activity;0.0449219877131005!GO:0004674;protein serine/threonine kinase activity;0.0449219877131005!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.044924391872537!GO:0015002;heme-copper terminal oxidase activity;0.044924391872537!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.044924391872537!GO:0004129;cytochrome-c oxidase activity;0.044924391872537!GO:0004563;beta-N-acetylhexosaminidase activity;0.0453184555109324!GO:0000096;sulfur amino acid metabolic process;0.0453863009174165!GO:0019904;protein domain specific binding;0.0462269910290682!GO:0019320;hexose catabolic process;0.0462269910290682!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0466647208057512!GO:0000910;cytokinesis;0.047151214570637!GO:0019318;hexose metabolic process;0.0471744514300648!GO:0030911;TPR domain binding;0.0471978010099626!GO:0005844;polysome;0.0477079038708595!GO:0044452;nucleolar part;0.0477569965690791!GO:0022406;membrane docking;0.0477859055829671!GO:0048278;vesicle docking;0.0477859055829671!GO:0006518;peptide metabolic process;0.04792680427717!GO:0032981;mitochondrial respiratory chain complex I assembly;0.04792680427717!GO:0010257;NADH dehydrogenase complex assembly;0.04792680427717!GO:0033108;mitochondrial respiratory chain complex assembly;0.04792680427717!GO:0030518;steroid hormone receptor signaling pathway;0.0490927284827433!GO:0004448;isocitrate dehydrogenase activity;0.0491531258178613!GO:0008287;protein serine/threonine phosphatase complex;0.0491531258178613!GO:0031418;L-ascorbic acid binding;0.0491576622739901!GO:0003923;GPI-anchor transamidase activity;0.0493422025188597!GO:0016255;attachment of GPI anchor to protein;0.0493422025188597!GO:0042765;GPI-anchor transamidase complex;0.0493422025188597!GO:0046983;protein dimerization activity;0.0494223822519662!GO:0050662;coenzyme binding;0.049659066749109!GO:0043433;negative regulation of transcription factor activity;0.0497257017970737
|sample_id=11609
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=eye
|top_motifs=NANOG:2.85379555922;PAX1,9:2.69123322933;SOX2:2.42607685551;T:2.21164932884;RBPJ:1.98299030759;NKX2-1,4:1.86608885439;GFI1:1.76234102644;ZIC1..3:1.75114056344;OCT4_SOX2{dimer}:1.63681701236;LHX3,4:1.5390403069;SOX{8,9,10}:1.48925696968;SOX17:1.45319473946;SP1:1.42537245533;VSX1,2:1.37526683105;NFY{A,B,C}:1.32036375753;GTF2A1,2:1.28414176308;PBX1:1.26928381328;FOXM1:1.24820076219;PATZ1:1.24041229649;ALX1:1.22951991181;TFDP1:1.22337065542;PAX5:1.22044082635;MZF1:1.19984268064;POU5F1:1.19766270917;MAZ:1.09659522;EBF1:1.08160720978;ZFP161:1.0739074322;PRRX1,2:1.0623779868;NKX2-3_NKX2-5:1.05683105506;HOX{A6,A7,B6,B7}:1.04640027335;MTE{core}:1.03040005565;LEF1_TCF7_TCF7L1,2:1.02841346592;ONECUT1,2:1.0261508476;HOX{A4,D4}:0.994024298258;GFI1B:0.979369352607;RREB1:0.97103180807;RORA:0.958334006181;ADNP_IRX_SIX_ZHX:0.929783943466;NHLH1,2:0.914019350568;STAT1,3:0.909053422209;CDX1,2,4:0.896447973127;NKX6-1,2:0.890677141452;GTF2I:0.880013770336;RFX1:0.853306208;CUX2:0.785246550716;LMO2:0.745366901872;TLX1..3_NFIC{dimer}:0.73780963632;DBP:0.698854574735;CRX:0.692874417409;XCPE1{core}:0.690552124828;RFX2..5_RFXANK_RFXAP:0.606704315497;ZBTB6:0.603073147472;POU1F1:0.594108780458;EVI1:0.58623985621;EGR1..3:0.584880484443;HIC1:0.577309865676;NRF1:0.556785093254;ZNF384:0.553085044443;CDC5L:0.550053154031;ZNF143:0.472502825056;JUN:0.47224625028;TFAP2B:0.453634069304;EP300:0.431632516153;TFAP4:0.413514763997;AHR_ARNT_ARNT2:0.413482980231;MED-1{core}:0.385077789771;MYFfamily:0.382849228825;PAX6:0.38075512186;E2F1..5:0.373049101504;PRDM1:0.367953144976;REST:0.333191363542;HAND1,2:0.292806348401;MYOD1:0.270790988869;GATA4:0.264744645327;SREBF1,2:0.250710355423;TGIF1:0.240871052092;NR3C1:0.234682531581;HNF4A_NR2F1,2:0.206299141057;KLF4:0.201459402801;SMAD1..7,9:0.169278822457;TEAD1:0.168130524084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.164790030922;PAX8:0.152606746662;NFE2:0.135315180787;NKX3-1:0.121510390276;PAX4:0.108433879197;TBP:0.104550260824;HOX{A5,B5}:0.103289393816;BPTF:0.0944549284775;TFCP2:0.0919179626891;YY1:0.0672646057492;ESRRA:0.0634652297419;FOXP1:0.0567675590263;ZEB1:0.0509786746587;FOXP3:0.040913209617;TAL1_TCF{3,4,12}:0.0277766467251;FOSL2:0.0197647015863;POU3F1..4:0.0031443104297;SOX5:-0.0207010013873;TFAP2{A,C}:-0.0254888846564;RXR{A,B,G}:-0.0294278841389;NFATC1..3:-0.0308515536536;HNF1A:-0.0408607381042;MYBL2:-0.0624116675226;BREu{core}:-0.0695820969786;ELK1,4_GABP{A,B1}:-0.07898932633;NR1H4:-0.0917697439702;HSF1,2:-0.0990700812571;GCM1,2:-0.105768047877;IKZF1:-0.114541942508;HMX1:-0.11498679717;SRF:-0.132490750007;ATF2:-0.134520261736;RUNX1..3:-0.166750020354;TP53:-0.167223105345;MYB:-0.168071710301;MEF2{A,B,C,D}:-0.181177182426;HIF1A:-0.198802928052;FOXQ1:-0.212024996961;FOX{I1,J2}:-0.212309327209;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.216127014572;POU2F1..3:-0.222966982376;FOS_FOS{B,L1}_JUN{B,D}:-0.22354404941;BACH2:-0.230905559238;POU6F1:-0.238753864561;SNAI1..3:-0.24614171694;NFIL3:-0.250360427406;ZNF148:-0.250938639974;IKZF2:-0.251735582486;NKX3-2:-0.258432454985;FOXL1:-0.262274733208;ZNF423:-0.262329877031;EN1,2:-0.262861054983;MTF1:-0.302431658961;ZBTB16:-0.319807012335;NR6A1:-0.322071996613;NFKB1_REL_RELA:-0.333113671878;GZF1:-0.336572948695;PDX1:-0.339269870059;UFEwm:-0.342430332332;NR5A1,2:-0.35136356496;NFE2L2:-0.355683476763;STAT5{A,B}:-0.370734622365;NFIX:-0.38087832894;STAT2,4,6:-0.390788722458;FOXN1:-0.397804877038;DMAP1_NCOR{1,2}_SMARC:-0.429914459402;TBX4,5:-0.457050472849;FOXA2:-0.459968967516;PITX1..3:-0.470542258948;IRF1,2:-0.475110331371;GATA6:-0.475773124121;CREB1:-0.506621923487;ATF4:-0.519407427714;IRF7:-0.528538703594;FOXD3:-0.533346525993;GLI1..3:-0.534776490717;TEF:-0.558447421201;XBP1:-0.559236923142;TOPORS:-0.56421218307;ALX4:-0.568243427151;MAFB:-0.576249731904;PAX2:-0.577431119093;CEBPA,B_DDIT3:-0.592951009306;FOX{D1,D2}:-0.606184688103;ARID5B:-0.611354322632;FOXO1,3,4:-0.627206466934;NKX2-2,8:-0.646413024531;SPIB:-0.655653863385;HMGA1,2:-0.666918096143;SPI1:-0.702139523604;AIRE:-0.730718873265;ZNF238:-0.758785528039;HLF:-0.763213233193;ELF1,2,4:-0.767558991038;ESR1:-0.781434172162;FOX{F1,F2,J1}:-0.786605517644;SPZ1:-0.795264397187;HOXA9_MEIS1:-0.798335533871;bHLH_family:-0.853969157008;RXRA_VDR{dimer}:-0.875146778547;ETS1,2:-0.903832894701;NANOG{mouse}:-0.906175283087;PPARG:-0.908548841655;ATF5_CREB3:-0.910294846571;HBP1_HMGB_SSRP1_UBTF:-0.920045315724;ATF6:-0.977585309886;NFE2L1:-1.01067764438;PAX3,7:-1.13824122954;TLX2:-1.1416498694;AR:-1.42860854997;HES1:-1.75643856365
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11609-120I7;search_select_hide=table117:FF:11609-120I7
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Lens Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12568
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typelens epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1357
catalog numberSC6555
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005741
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12568 CAGE DRX008320 DRR009192
Accession ID Hg19

Library idBAMCTSS
CNhs12568 DRZ000617 DRZ002002
Accession ID Hg38

Library idBAMCTSS
CNhs12568 DRZ011967 DRZ013352
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.107
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.207
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0476
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.08
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.173
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0476
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0476
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.17
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.112
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0149
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.642
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.0476
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.555
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0476
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.123
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.165
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0476
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0476
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0476
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0476
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12568

Jaspar motifP-value
MA0002.27.59982e-4
MA0003.10.0788
MA0004.10.269
MA0006.10.867
MA0007.10.158
MA0009.10.658
MA0014.10.874
MA0017.10.0254
MA0018.20.833
MA0019.10.522
MA0024.10.0133
MA0025.10.704
MA0027.10.453
MA0028.10.563
MA0029.10.17
MA0030.10.306
MA0031.10.0649
MA0035.20.501
MA0038.14.94677e-5
MA0039.20.725
MA0040.10.513
MA0041.10.288
MA0042.10.663
MA0043.10.279
MA0046.10.596
MA0047.20.00274
MA0048.10.687
MA0050.17.75419e-5
MA0051.10.0527
MA0052.10.0704
MA0055.10.478
MA0057.10.547
MA0058.10.287
MA0059.10.045
MA0060.11.31937e-13
MA0061.10.0132
MA0062.20.0195
MA0065.20.00731
MA0066.10.187
MA0067.10.277
MA0068.10.0883
MA0069.10.727
MA0070.10.00685
MA0071.10.212
MA0072.10.301
MA0073.10.67
MA0074.10.399
MA0076.10.589
MA0077.10.0122
MA0078.10.212
MA0079.20.563
MA0080.24.13381e-12
MA0081.10.0958
MA0083.10.807
MA0084.10.442
MA0087.10.877
MA0088.10.0531
MA0090.10.611
MA0091.10.106
MA0092.10.309
MA0093.10.328
MA0099.20.00654
MA0100.10.601
MA0101.10.144
MA0102.20.102
MA0103.10.155
MA0104.20.0723
MA0105.13.26908e-5
MA0106.10.0855
MA0107.10.0862
MA0108.23.17497e-6
MA0111.10.722
MA0112.22.85703e-5
MA0113.10.0513
MA0114.10.243
MA0115.10.548
MA0116.18.30218e-5
MA0117.10.578
MA0119.10.132
MA0122.10.342
MA0124.10.408
MA0125.10.00418
MA0131.10.75
MA0135.10.00123
MA0136.11.69793e-12
MA0137.20.886
MA0138.20.987
MA0139.10.473
MA0140.10.292
MA0141.10.0397
MA0142.10.00263
MA0143.10.0125
MA0144.10.203
MA0145.10.687
MA0146.10.0705
MA0147.10.0242
MA0148.10.00692
MA0149.10.00645
MA0150.18.80398e-4
MA0152.10.332
MA0153.10.429
MA0154.10.0042
MA0155.10.914
MA0156.11.44576e-7
MA0157.10.0396
MA0159.10.048
MA0160.10.0606
MA0162.10.493
MA0163.12.04598e-9
MA0164.10.512
MA0258.10.00545
MA0259.10.46



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12568

Novel motifP-value
10.0252
100.0111
1000.893
1010.524
1020.964
1030.152
1040.662
1050.47
1060.0365
1070.978
1080.337
1090.0307
110.0296
1100.249
1110.0207
1120.0523
1130.715
1140.0102
1150.0845
1160.577
1170.0152
1180.178
1190.242
120.67
1200.292
1210.711
1220.739
1230.0359
1240.694
1250.964
1260.324
1270.616
1280.293
1290.261
130.161
1300.0681
1310.478
1320.938
1330.863
1340.808
1350.401
1360.571
1370.0843
1380.235
1390.0025
140.84
1400.442
1410.216
1420.0988
1430.0321
1440.731
1450.788
1460.876
1470.864
1480.00687
1490.111
150.0719
1500.392
1510.311
1520.12
1530.419
1540.604
1550.0253
1560.25
1570.622
1580.334
1590.446
160.0999
1600.203
1610.452
1620.232
1630.867
1640.00292
1650.586
1660.294
1670.217
1680.496
1690.00389
170.0746
180.0764
190.307
20.696
200.664
210.293
220.362
230.21
240.59
250.348
260.0802
270.537
280.825
290.0283
30.0343
300.397
310.892
320.077
330.275
340.836
350.279
360.106
370.0729
380.163
390.744
40.755
400.49
410.293
420.232
430.135
440.151
450.936
460.0641
470.051
480.104
490.106
50.193
500.889
510.471
520.751
530.606
540.393
550.0741
560.616
570.366
580.0992
590.0978
60.51
600.0724
610.119
620.0445
630.162
640.287
650.107
660.714
670.682
680.463
690.37
70.243
700.00826
710.0142
720.398
730.0402
740.204
750.00993
760.142
770.234
780.149
790.159
80.147
800.7
810.221
820.0512
830.636
840.627
850.0929
860.0712
870.128
880.765
890.347
90.455
900.486
910.602
920.12
930.0541
940.0624
950.0259
960.541
970.717
980.229
990.871



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12568


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000085 (human lens epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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