FF:11689-122I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004906 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008443;DRR009315;DRZ000740;DRZ002125;DRZ012090;DRZ013475 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0005388,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0001781,UBERON:0001032,UBERON:0010317,UBERON:0001782,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000255,CL:0000149,CL:0002586 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000158 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11689-122I6 | |id=FF:11689-122I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000158 | ||
|is_obsolete= | |||
|library_id=CNhs12733 | |||
|library_id_phase_based=2:CNhs12733 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11689 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11689 | |||
|name=Retinal Pigment Epithelial Cells, donor3 | |name=Retinal Pigment Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12733,LSID960,release012,COMPLETED | |profile_hcage=CNhs12733,LSID960,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.27483329820609,-0.221233617193838,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.147942571412871,0,0,0,0,0,0,0,0,0.210863042648906,0,0,0,0,0,0,0.122339886766207,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.122339886766207,0,0,0,0,0,0,0,0,-0.0936405020795325,0,0,0,0,0,0,0,0,0,0,0.159236265328519,-0.150027459312766,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0352036505393575,0,0,0,-0.134268397006542,-0.154232232462649,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.124838988519358,0.057636836509138,0.154689209183399,-0.143515142523472,0,0,-0.257267597456295,0,0.217683092140345,0,0,0,0,0,0,0,0.0895632251877799,0,0.071927335176892,0,0,0,0,0,-0.305472230898407,0,0.06082000261223,0.0539956256888387,0,0,0,0,-0.100229179881049,0,-0.120879483793741,0.134962923816927,0.515562412133864,-0.290096223055195,-0.055712496781182,0,0,0,-0.166540479797817,-0.273671589965523,0,0,-0.0606099083687705,-0.0725080724904865,0,0,0.237730846383773,0.89392514851034,-0.108556511460722,-0.0604397418968705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199256404550149,-0.204648709912762,0,0,0.122339886766207,0.055848087060941,-0.339232431543349,0.111906146269911,0,0.0968699715669129,0.0285276977077564,0.0297868313820227,0.537941292365277,0,-0.0847066348695686,0.0338742455509735,0.00622593349016505,0.191501816414597,0.322754278152341,0.404234596605484,0,-0.427354153656445,-0.270710216980148,-0.0111724637683678,-0.319998802269564,-0.00405083766486631,-0.212875542936503,-0.103739276819635,0,0,0,-0.020436463810064,0,0,-0.272431622336429,0.0685224186307495,-0.148585696334232,-0.0829945365128885,-0.0488398591167067,-0.0180844584879325,0.347642785397981,0.261058520599723,-0.000755437426377405,-0.125755674300874,-0.0244359090261939,0,0,0.0719732214899775,0.218864609273722,-0.145670045655199,0,-0.121963920287483,0.149338831062976,0,0.182860321044553,-0.00892995976387745,0,0,-0.108621103347932,0,0,0,0,0,-0.228379824388663,-0.177478601506668,-0.232855561555545,0,-0.0474598345550898,0,-0.236116136969483,0,-0.0992373499707606,-0.0790771540881303,-0.00225750175846695,0.187219153024331,0,-0.109981314126033,-0.102445552792782,-0.0267775540439732,-0.300054918625531,0.159236265328519,0.326893963179046,-0.288938438254323,0.249786673699923,-0.571256772649882,0.0862606085312408,0.427435579658576,0,0.328450564055066,-0.383681481018699,-0.0628540350643486,0.0612508299824551,0,0.119291482009172,0,0.0758217180770329,0,-0.135258807239505,-0.120991537977238,0.0308667529427935,-0.145818080343421,0,-0.0295812212439985,0.21664577860707,0.122339886766207,-0.0954052650926146,0.0319384456080838,0.217683092140345,0.0673160088057053,-0.401879315909757,0.127853283302994,-0.0166495699129877,0,-0.161304730454249,0,0,0.248945609331513,-0.235476037764389,0,-0.309695191852254,-0.0936405020795325,-0.242202499671797,-0.115971073434934,0,0,-0.0169249100573172,0,0.122339886766207,0.745771135101823,-0.0384121399270947,-0.323966673355808,-0.130986454720549,-0.074598076891206,0.100455459230261,0,0,-0.0551878791989687,0,0.435589871600713,0,0,0.137294017255828,0.00571177377607414,0,0.209721106748001,0,0,0,0.122376017933272,0,0,0,0,0,-0.143959590093517,-0.0590166796136226,0,0.188011253237002,0,0,0,0,0,0,0,0,-0.00779026048957854,0.0909697661522098,-0.000677528910213346,0.122339886766207,0,0,0,0.00195968958686993,-0.203236562094724,0,0.0858203856427129,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.353072303003675,0,0,0,-0.27695440160179,0,0,0,0,-0.0166397177166586,0,0,0,0,-0.0288147101782885,0.214234771055984,0,-0.115253327658223,0.250639891263971,0.681440678914285,0,0,-0.139007245023681,0,0.0267862280791489,-0.00407749084706244,-0.0823702229656663,0,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.0279151330753469,-0.0922240566585104,-0.0485147813600729,0,0,0,0,0,0,-0.0241060230789031,-0.118266961817251,0,0,0,0,0,0.122339886766207,0,0,-0.253742847522897,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.442467234387677,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392243326098416,-0.151339388069633,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.38491539226329,0,-0.154686884163427,-0.123202864573785,0,0,-0.232628352633041,0,0,0,0,0,0,0.077501122041645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119638843276834,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0303070769656808,0,0,0,0,0,0,-0.045800126511857,0.162663166754493,0.0141969634879636,0,0,0,0.203395633584477,0,0,0,0.122339886766207,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108841546070173,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0.0611699433831035,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0907463428908368,0,0,0,0,0,0,0.122339886766207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.18774577481005,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.122339886766207,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.148016989269679,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.421726085297811,0,0,0,0,0,0,0,0,0.122339886766207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.162297663868097,-0.154232232462649,0,0,0,0,0,0,0,0,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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC6545 | |rna_catalog_number=SC6545 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.6530188381742e-235!GO:0005737;cytoplasm;2.98082705085494e-191!GO:0043226;organelle;2.72433198869468e-186!GO:0043229;intracellular organelle;6.63168106354645e-186!GO:0043231;intracellular membrane-bound organelle;2.66925917896355e-185!GO:0043227;membrane-bound organelle;4.67231381707136e-185!GO:0044444;cytoplasmic part;2.09391250723065e-137!GO:0044422;organelle part;4.89898900604472e-134!GO:0044446;intracellular organelle part;1.08039740670475e-132!GO:0030529;ribonucleoprotein complex;2.55936619517964e-88!GO:0032991;macromolecular complex;5.94708206803023e-88!GO:0044237;cellular metabolic process;1.7352592937237e-87!GO:0044238;primary metabolic process;5.21610096649026e-84!GO:0043233;organelle lumen;2.05462599067262e-72!GO:0031974;membrane-enclosed lumen;2.05462599067262e-72!GO:0005739;mitochondrion;4.63853678665192e-72!GO:0043170;macromolecule metabolic process;4.86242559193443e-70!GO:0003723;RNA binding;5.77874263336499e-70!GO:0044428;nuclear part;3.82244879086263e-68!GO:0005515;protein binding;6.11037212974218e-68!GO:0005634;nucleus;2.64095139611421e-66!GO:0005840;ribosome;2.80822924450231e-53!GO:0006396;RNA processing;6.10330024829154e-53!GO:0031090;organelle membrane;1.62252532611587e-50!GO:0006412;translation;5.17638813083746e-50!GO:0009058;biosynthetic process;3.63141846560787e-47!GO:0044429;mitochondrial part;6.18809103991286e-46!GO:0044249;cellular biosynthetic process;1.71123302109251e-45!GO:0003735;structural constituent of ribosome;3.31268804699503e-45!GO:0016043;cellular component organization and biogenesis;4.21171649030592e-45!GO:0015031;protein transport;8.97034403722068e-44!GO:0033036;macromolecule localization;1.4709356725497e-43!GO:0019538;protein metabolic process;2.86383181607898e-43!GO:0031981;nuclear lumen;4.49154035673413e-41!GO:0043234;protein complex;5.12445325143665e-41!GO:0033279;ribosomal subunit;5.64990774981242e-40!GO:0008104;protein localization;7.12031252950728e-40!GO:0010467;gene expression;7.78023843316176e-40!GO:0045184;establishment of protein localization;1.31752262746554e-39!GO:0031967;organelle envelope;2.42903522113798e-39!GO:0044260;cellular macromolecule metabolic process;5.86077189789859e-39!GO:0031975;envelope;6.05991066077155e-39!GO:0009059;macromolecule biosynthetic process;1.11779792029172e-38!GO:0044267;cellular protein metabolic process;2.15765159214672e-38!GO:0016071;mRNA metabolic process;4.93511688096293e-38!GO:0043283;biopolymer metabolic process;1.53079825092616e-37!GO:0005829;cytosol;3.1420798171732e-36!GO:0046907;intracellular transport;1.61278915341902e-35!GO:0008380;RNA splicing;3.04102676216993e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.45007847286266e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.19579835740574e-33!GO:0006397;mRNA processing;7.54064044636017e-33!GO:0006996;organelle organization and biogenesis;1.66868248990742e-31!GO:0065003;macromolecular complex assembly;3.12414624536402e-30!GO:0006886;intracellular protein transport;9.20702993062254e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.06029299487785e-28!GO:0043228;non-membrane-bound organelle;7.67029043674545e-28!GO:0043232;intracellular non-membrane-bound organelle;7.67029043674545e-28!GO:0005740;mitochondrial envelope;2.2636089862301e-27!GO:0048770;pigment granule;2.4208851572891e-27!GO:0042470;melanosome;2.4208851572891e-27!GO:0022607;cellular component assembly;3.06496595386323e-27!GO:0019866;organelle inner membrane;1.01014383284611e-26!GO:0031966;mitochondrial membrane;1.10241589625563e-25!GO:0005681;spliceosome;2.36865676125809e-25!GO:0005743;mitochondrial inner membrane;3.20261036856734e-25!GO:0005654;nucleoplasm;4.58119353664559e-23!GO:0031980;mitochondrial lumen;2.0385595699361e-22!GO:0005759;mitochondrial matrix;2.0385595699361e-22!GO:0006119;oxidative phosphorylation;4.76641695706314e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;7.04198265128107e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.32060877593191e-22!GO:0051649;establishment of cellular localization;8.27041522174061e-22!GO:0016462;pyrophosphatase activity;9.23057224560673e-22!GO:0044445;cytosolic part;1.74890634338367e-21!GO:0051641;cellular localization;2.35138559403006e-21!GO:0006457;protein folding;2.73927619743671e-21!GO:0000166;nucleotide binding;3.33846651259157e-21!GO:0012505;endomembrane system;1.2530041725889e-20!GO:0015935;small ribosomal subunit;1.39201150064922e-20!GO:0015934;large ribosomal subunit;1.96732660245239e-20!GO:0005730;nucleolus;2.85717052580523e-20!GO:0017111;nucleoside-triphosphatase activity;3.56495479799052e-20!GO:0003676;nucleic acid binding;5.50737671668196e-20!GO:0006259;DNA metabolic process;2.36940096845389e-19!GO:0044451;nucleoplasm part;4.8176318973464e-19!GO:0044455;mitochondrial membrane part;1.19262158269814e-18!GO:0016874;ligase activity;2.57145320881722e-18!GO:0005783;endoplasmic reticulum;8.90284925658338e-18!GO:0022618;protein-RNA complex assembly;1.54420348122276e-17!GO:0051186;cofactor metabolic process;2.79112040592408e-17!GO:0016070;RNA metabolic process;2.80592214935426e-16!GO:0005761;mitochondrial ribosome;4.72933048170553e-16!GO:0000313;organellar ribosome;4.72933048170553e-16!GO:0042254;ribosome biogenesis and assembly;5.80282395347877e-16!GO:0044265;cellular macromolecule catabolic process;6.13169295660648e-16!GO:0008135;translation factor activity, nucleic acid binding;9.61875302419477e-16!GO:0008134;transcription factor binding;1.33852357128476e-15!GO:0005746;mitochondrial respiratory chain;3.29733700339015e-15!GO:0051082;unfolded protein binding;6.7068122909438e-15!GO:0006605;protein targeting;1.00591711620145e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.0568366699998e-14!GO:0044432;endoplasmic reticulum part;1.07032302125408e-14!GO:0044248;cellular catabolic process;1.15459549325587e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.4438062833573e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.66840363044714e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.99295001793994e-14!GO:0006512;ubiquitin cycle;3.19636765228922e-14!GO:0019941;modification-dependent protein catabolic process;4.06537860442591e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.06537860442591e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.97223626314262e-14!GO:0032553;ribonucleotide binding;5.11675680620028e-14!GO:0032555;purine ribonucleotide binding;5.11675680620028e-14!GO:0043285;biopolymer catabolic process;5.63906628884882e-14!GO:0006732;coenzyme metabolic process;6.73751722079299e-14!GO:0017076;purine nucleotide binding;7.62450759838227e-14!GO:0044257;cellular protein catabolic process;7.85314868417963e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.0759864103395e-13!GO:0003954;NADH dehydrogenase activity;1.0759864103395e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0759864103395e-13!GO:0009057;macromolecule catabolic process;1.5152552194773e-13!GO:0005794;Golgi apparatus;1.85263438616894e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.40264461244772e-13!GO:0007049;cell cycle;3.3044747187757e-13!GO:0005635;nuclear envelope;9.62753742861636e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.42825381834333e-12!GO:0048193;Golgi vesicle transport;2.21792781887289e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.6052587692604e-12!GO:0042773;ATP synthesis coupled electron transport;4.6052587692604e-12!GO:0031965;nuclear membrane;6.79401474011579e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.79401474011579e-12!GO:0045271;respiratory chain complex I;6.79401474011579e-12!GO:0005747;mitochondrial respiratory chain complex I;6.79401474011579e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;8.776907550046e-12!GO:0000375;RNA splicing, via transesterification reactions;8.776907550046e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.776907550046e-12!GO:0030163;protein catabolic process;1.05372043090217e-11!GO:0003743;translation initiation factor activity;1.07233466203476e-11!GO:0006399;tRNA metabolic process;1.07984688354659e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.70075345494175e-11!GO:0006974;response to DNA damage stimulus;1.7925948699118e-11!GO:0006413;translational initiation;3.19213335798986e-11!GO:0009259;ribonucleotide metabolic process;4.34980698611822e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.5143802192579e-11!GO:0006163;purine nucleotide metabolic process;6.27420747183473e-11!GO:0006446;regulation of translational initiation;6.4364466387424e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.57109242618148e-11!GO:0005789;endoplasmic reticulum membrane;9.15782781048132e-11!GO:0016192;vesicle-mediated transport;9.79360405757131e-11!GO:0044453;nuclear membrane part;1.03397551480763e-10!GO:0006364;rRNA processing;1.49488243927102e-10!GO:0009055;electron carrier activity;1.93586713795936e-10!GO:0008565;protein transporter activity;2.13814107331518e-10!GO:0016072;rRNA metabolic process;2.20082878020784e-10!GO:0003712;transcription cofactor activity;2.32686202508727e-10!GO:0009150;purine ribonucleotide metabolic process;2.48481739948986e-10!GO:0016887;ATPase activity;2.94738196273989e-10!GO:0043412;biopolymer modification;3.05082412393604e-10!GO:0042623;ATPase activity, coupled;3.28313084657571e-10!GO:0006164;purine nucleotide biosynthetic process;3.57025535879262e-10!GO:0005524;ATP binding;3.66670688321669e-10!GO:0009260;ribonucleotide biosynthetic process;7.30444780522224e-10!GO:0032559;adenyl ribonucleotide binding;8.0050543957488e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.15616162307045e-09!GO:0045333;cellular respiration;1.3951478650942e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.40734835932323e-09!GO:0030554;adenyl nucleotide binding;1.47637953517234e-09!GO:0022402;cell cycle process;1.97345740093242e-09!GO:0016604;nuclear body;2.06618494159067e-09!GO:0009060;aerobic respiration;3.1337765468297e-09!GO:0005643;nuclear pore;3.56380745798164e-09!GO:0015986;ATP synthesis coupled proton transport;3.62794088729017e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.62794088729017e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.55664818869787e-09!GO:0051188;cofactor biosynthetic process;4.58243928708282e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.14023372723184e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.14023372723184e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.14023372723184e-09!GO:0006464;protein modification process;5.30331796268863e-09!GO:0065002;intracellular protein transport across a membrane;6.09359780359512e-09!GO:0003924;GTPase activity;6.47196618995256e-09!GO:0009056;catabolic process;6.61057613248491e-09!GO:0006913;nucleocytoplasmic transport;6.69213555579427e-09!GO:0006281;DNA repair;6.94171110256225e-09!GO:0009141;nucleoside triphosphate metabolic process;7.16704436854082e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.78869245168942e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.78869245168942e-09!GO:0019829;cation-transporting ATPase activity;8.32521777847564e-09!GO:0006461;protein complex assembly;1.0649304119604e-08!GO:0012501;programmed cell death;1.20877284889895e-08!GO:0043038;amino acid activation;1.20877284889895e-08!GO:0006418;tRNA aminoacylation for protein translation;1.20877284889895e-08!GO:0043039;tRNA aminoacylation;1.20877284889895e-08!GO:0051169;nuclear transport;1.25181516896873e-08!GO:0005768;endosome;1.27385877523396e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.50177551730099e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.60017911666908e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.60017911666908e-08!GO:0051276;chromosome organization and biogenesis;1.93440260679928e-08!GO:0004386;helicase activity;2.07206329557074e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.19161099439113e-08!GO:0005793;ER-Golgi intermediate compartment;2.46195136377168e-08!GO:0006915;apoptosis;2.51009647583376e-08!GO:0016607;nuclear speck;2.65257667669555e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.82537299255299e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.82537299255299e-08!GO:0009719;response to endogenous stimulus;3.01129920857368e-08!GO:0006403;RNA localization;3.03241453899818e-08!GO:0050657;nucleic acid transport;3.1629416292042e-08!GO:0051236;establishment of RNA localization;3.1629416292042e-08!GO:0050658;RNA transport;3.1629416292042e-08!GO:0016491;oxidoreductase activity;3.29012310272327e-08!GO:0031988;membrane-bound vesicle;3.30815717176095e-08!GO:0046034;ATP metabolic process;3.36152048514542e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.37501055473488e-08!GO:0008639;small protein conjugating enzyme activity;4.18581537540485e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.23398442785191e-08!GO:0007005;mitochondrion organization and biogenesis;4.28733365996532e-08!GO:0065004;protein-DNA complex assembly;5.07109323862813e-08!GO:0008026;ATP-dependent helicase activity;5.49291547866431e-08!GO:0005773;vacuole;8.2317694538044e-08!GO:0004842;ubiquitin-protein ligase activity;8.26548082368546e-08!GO:0008219;cell death;8.91069063100836e-08!GO:0016265;death;8.91069063100836e-08!GO:0006754;ATP biosynthetic process;9.8992394653815e-08!GO:0006753;nucleoside phosphate metabolic process;9.8992394653815e-08!GO:0006323;DNA packaging;1.00895144448663e-07!GO:0017038;protein import;1.1246843959556e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.16490929721218e-07!GO:0006099;tricarboxylic acid cycle;1.22155269489188e-07!GO:0046356;acetyl-CoA catabolic process;1.22155269489188e-07!GO:0048475;coated membrane;1.23424890661781e-07!GO:0030117;membrane coat;1.23424890661781e-07!GO:0000278;mitotic cell cycle;1.39746653274592e-07!GO:0019787;small conjugating protein ligase activity;2.29047451607326e-07!GO:0009108;coenzyme biosynthetic process;2.34313887932819e-07!GO:0046930;pore complex;2.55904972809589e-07!GO:0009117;nucleotide metabolic process;2.57753575526752e-07!GO:0006084;acetyl-CoA metabolic process;2.83691097404012e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.0305512784714e-07!GO:0051187;cofactor catabolic process;3.47671624782877e-07!GO:0043687;post-translational protein modification;3.99460590332533e-07!GO:0005667;transcription factor complex;4.07365602643343e-07!GO:0006366;transcription from RNA polymerase II promoter;4.67857741408128e-07!GO:0003714;transcription corepressor activity;5.42675376241643e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.75853191665766e-07!GO:0009109;coenzyme catabolic process;6.19289582891604e-07!GO:0000323;lytic vacuole;6.80924073736498e-07!GO:0005764;lysosome;6.80924073736498e-07!GO:0005694;chromosome;7.70240112857495e-07!GO:0005770;late endosome;7.76948466925666e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.42925868515644e-07!GO:0005525;GTP binding;8.59366591118215e-07!GO:0006260;DNA replication;8.97134531717788e-07!GO:0030120;vesicle coat;1.00040624015978e-06!GO:0030662;coated vesicle membrane;1.00040624015978e-06!GO:0031982;vesicle;1.16547130424355e-06!GO:0000074;regulation of progression through cell cycle;1.2703429382935e-06!GO:0016881;acid-amino acid ligase activity;1.2834953522873e-06!GO:0051726;regulation of cell cycle;1.31778449771419e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.31799691297711e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.39334523729688e-06!GO:0051028;mRNA transport;1.40696447691077e-06!GO:0031410;cytoplasmic vesicle;1.60263746133402e-06!GO:0048523;negative regulation of cellular process;1.65851099766724e-06!GO:0008654;phospholipid biosynthetic process;2.0096569911969e-06!GO:0015630;microtubule cytoskeleton;2.43172509010428e-06!GO:0006752;group transfer coenzyme metabolic process;3.56942103151358e-06!GO:0044431;Golgi apparatus part;3.9719208826388e-06!GO:0043566;structure-specific DNA binding;4.11679649156559e-06!GO:0045259;proton-transporting ATP synthase complex;4.27059145603945e-06!GO:0044440;endosomal part;4.94192182346881e-06!GO:0010008;endosome membrane;4.94192182346881e-06!GO:0044427;chromosomal part;5.02113853213612e-06!GO:0032561;guanyl ribonucleotide binding;5.28122134538441e-06!GO:0019001;guanyl nucleotide binding;5.28122134538441e-06!GO:0005798;Golgi-associated vesicle;5.46268720959288e-06!GO:0016853;isomerase activity;5.70794246921141e-06!GO:0015980;energy derivation by oxidation of organic compounds;6.07869921564848e-06!GO:0006333;chromatin assembly or disassembly;7.8642934532789e-06!GO:0005762;mitochondrial large ribosomal subunit;8.54742859103971e-06!GO:0000315;organellar large ribosomal subunit;8.54742859103971e-06!GO:0051246;regulation of protein metabolic process;8.90329325615098e-06!GO:0006613;cotranslational protein targeting to membrane;1.17080613846451e-05!GO:0043069;negative regulation of programmed cell death;1.17948741691546e-05!GO:0003697;single-stranded DNA binding;1.2323136821283e-05!GO:0000245;spliceosome assembly;1.38145704911484e-05!GO:0016787;hydrolase activity;1.39065940325979e-05!GO:0031252;leading edge;1.5390680515208e-05!GO:0048471;perinuclear region of cytoplasm;1.65974910354751e-05!GO:0050794;regulation of cellular process;1.73724355969547e-05!GO:0005788;endoplasmic reticulum lumen;1.94344508276706e-05!GO:0016740;transferase activity;1.95637300149606e-05!GO:0045786;negative regulation of progression through cell cycle;1.9785058311127e-05!GO:0003724;RNA helicase activity;2.04019057586609e-05!GO:0006414;translational elongation;2.13201413749295e-05!GO:0043021;ribonucleoprotein binding;2.31994068924622e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.38684986521804e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.52696770443769e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.52696770443769e-05!GO:0016567;protein ubiquitination;2.59255894439696e-05!GO:0032446;protein modification by small protein conjugation;2.62014083819485e-05!GO:0043066;negative regulation of apoptosis;2.68767010609527e-05!GO:0000314;organellar small ribosomal subunit;3.19966978235782e-05!GO:0005763;mitochondrial small ribosomal subunit;3.19966978235782e-05!GO:0016564;transcription repressor activity;3.2072701412079e-05!GO:0000785;chromatin;3.36168339158495e-05!GO:0022403;cell cycle phase;3.60614002337292e-05!GO:0006916;anti-apoptosis;3.86593546775252e-05!GO:0043623;cellular protein complex assembly;3.88646331598406e-05!GO:0016568;chromatin modification;3.94354134224497e-05!GO:0006091;generation of precursor metabolites and energy;3.98568160029484e-05!GO:0048519;negative regulation of biological process;4.43929377026319e-05!GO:0006334;nucleosome assembly;4.57625900960278e-05!GO:0000087;M phase of mitotic cell cycle;4.72882366967544e-05!GO:0051427;hormone receptor binding;4.7598243567164e-05!GO:0043067;regulation of programmed cell death;5.24420359533512e-05!GO:0007067;mitosis;5.9780912053218e-05!GO:0042981;regulation of apoptosis;7.5409498877601e-05!GO:0030867;rough endoplasmic reticulum membrane;8.42048042661147e-05!GO:0035257;nuclear hormone receptor binding;0.000102265579797547!GO:0046474;glycerophospholipid biosynthetic process;0.000109219763850391!GO:0003713;transcription coactivator activity;0.000110668195417226!GO:0005905;coated pit;0.00011826921564979!GO:0045454;cell redox homeostasis;0.000123996830107784!GO:0031497;chromatin assembly;0.000127761886903254!GO:0051789;response to protein stimulus;0.000139109214812633!GO:0006986;response to unfolded protein;0.000139109214812633!GO:0003899;DNA-directed RNA polymerase activity;0.000140360946134506!GO:0000151;ubiquitin ligase complex;0.000141635746810504!GO:0051170;nuclear import;0.000142525731037405!GO:0004298;threonine endopeptidase activity;0.000159565546250417!GO:0016779;nucleotidyltransferase activity;0.000162064393390731!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000163341289506328!GO:0051301;cell division;0.000169347552345465!GO:0019752;carboxylic acid metabolic process;0.000194142799353842!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00020989522464554!GO:0015399;primary active transmembrane transporter activity;0.00020989522464554!GO:0006082;organic acid metabolic process;0.00021442786120518!GO:0008033;tRNA processing;0.000221154050358179!GO:0008186;RNA-dependent ATPase activity;0.000232412475105337!GO:0005791;rough endoplasmic reticulum;0.000241839157984598!GO:0006612;protein targeting to membrane;0.0002444362049613!GO:0006606;protein import into nucleus;0.000248591041782579!GO:0043681;protein import into mitochondrion;0.000264442150757962!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000267957994528998!GO:0006383;transcription from RNA polymerase III promoter;0.000276047311095322!GO:0044452;nucleolar part;0.000277225922754625!GO:0006793;phosphorus metabolic process;0.000291167629696941!GO:0006796;phosphate metabolic process;0.000291167629696941!GO:0009165;nucleotide biosynthetic process;0.000295863422369698!GO:0019748;secondary metabolic process;0.000324424136127576!GO:0030118;clathrin coat;0.000333127065622491!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000340543254924561!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000342125832902571!GO:0006626;protein targeting to mitochondrion;0.000345855806325871!GO:0006839;mitochondrial transport;0.000353039462538943!GO:0016859;cis-trans isomerase activity;0.000399058025701514!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000436717136552931!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000437564591897338!GO:0031072;heat shock protein binding;0.000441521605642479!GO:0044262;cellular carbohydrate metabolic process;0.00044890051700479!GO:0000139;Golgi membrane;0.000449355880688869!GO:0008250;oligosaccharyl transferase complex;0.00048845001767558!GO:0030659;cytoplasmic vesicle membrane;0.000492325911000601!GO:0005769;early endosome;0.000529496840122952!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000579674127342171!GO:0043284;biopolymer biosynthetic process;0.000614688760532434!GO:0004004;ATP-dependent RNA helicase activity;0.000673587327422744!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000680841725965942!GO:0051168;nuclear export;0.000693167780464816!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000702729954250187!GO:0016363;nuclear matrix;0.000706059692736894!GO:0051920;peroxiredoxin activity;0.000729076862284705!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000846291126938558!GO:0004576;oligosaccharyl transferase activity;0.000879575866589874!GO:0016563;transcription activator activity;0.000897642249899349!GO:0006520;amino acid metabolic process;0.000920789737661898!GO:0007010;cytoskeleton organization and biogenesis;0.000924065939176809!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000925176549802912!GO:0044433;cytoplasmic vesicle part;0.000938638316276947!GO:0030036;actin cytoskeleton organization and biogenesis;0.000977908765968311!GO:0050789;regulation of biological process;0.000978721241528367!GO:0006402;mRNA catabolic process;0.000997109341811889!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00104358099590553!GO:0003729;mRNA binding;0.00105760889449706!GO:0016126;sterol biosynthetic process;0.00106002355307795!GO:0031968;organelle outer membrane;0.00109080178005395!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00115958657031261!GO:0019867;outer membrane;0.00120015749121292!GO:0046489;phosphoinositide biosynthetic process;0.00120475448564498!GO:0005813;centrosome;0.00125306519291765!GO:0005885;Arp2/3 protein complex;0.00141721913714969!GO:0051087;chaperone binding;0.00143125765714526!GO:0006891;intra-Golgi vesicle-mediated transport;0.00145490075499239!GO:0033116;ER-Golgi intermediate compartment membrane;0.00145947881081716!GO:0007040;lysosome organization and biogenesis;0.0015033188346665!GO:0003690;double-stranded DNA binding;0.0015033188346665!GO:0005048;signal sequence binding;0.0015033188346665!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0015033188346665!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0015033188346665!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0015033188346665!GO:0012506;vesicle membrane;0.0015033188346665!GO:0051287;NAD binding;0.00155913775796898!GO:0031124;mRNA 3'-end processing;0.00156184774192757!GO:0008610;lipid biosynthetic process;0.00158411204506374!GO:0006352;transcription initiation;0.00158411204506374!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00159112974634838!GO:0000049;tRNA binding;0.00159851357206655!GO:0042440;pigment metabolic process;0.00166514077021131!GO:0019899;enzyme binding;0.00175268750633032!GO:0016310;phosphorylation;0.00183820815222334!GO:0030133;transport vesicle;0.00184078537027888!GO:0005815;microtubule organizing center;0.00189527738566767!GO:0006650;glycerophospholipid metabolic process;0.00195178466986608!GO:0031324;negative regulation of cellular metabolic process;0.0019937193112505!GO:0007033;vacuole organization and biogenesis;0.0019937193112505!GO:0000279;M phase;0.00210244385730435!GO:0007050;cell cycle arrest;0.00216008499462409!GO:0008092;cytoskeletal protein binding;0.00222095873353442!GO:0051252;regulation of RNA metabolic process;0.00236286698997523!GO:0048500;signal recognition particle;0.00236558001948544!GO:0046467;membrane lipid biosynthetic process;0.00238093384344902!GO:0003746;translation elongation factor activity;0.00242736761524841!GO:0031902;late endosome membrane;0.00252753470548122!GO:0006401;RNA catabolic process;0.002574769039883!GO:0051329;interphase of mitotic cell cycle;0.00262379725682575!GO:0043492;ATPase activity, coupled to movement of substances;0.00262379725682575!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00268074446789792!GO:0005741;mitochondrial outer membrane;0.00283727034079152!GO:0008361;regulation of cell size;0.0028402510153582!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0028470973449536!GO:0019843;rRNA binding;0.00285415139669786!GO:0007006;mitochondrial membrane organization and biogenesis;0.00299445128920235!GO:0051325;interphase;0.0029955900088531!GO:0030658;transport vesicle membrane;0.00309501810598236!GO:0048487;beta-tubulin binding;0.0031126960275537!GO:0015992;proton transport;0.00314337208606795!GO:0018196;peptidyl-asparagine modification;0.00316211878669414!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00316211878669414!GO:0035258;steroid hormone receptor binding;0.00327818341108327!GO:0050662;coenzyme binding;0.00359545890689384!GO:0043488;regulation of mRNA stability;0.00359545890689384!GO:0043487;regulation of RNA stability;0.00359545890689384!GO:0019222;regulation of metabolic process;0.00362428288029625!GO:0030029;actin filament-based process;0.00363984525097821!GO:0005774;vacuolar membrane;0.00363984525097821!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00381331679097816!GO:0051539;4 iron, 4 sulfur cluster binding;0.00389206358012599!GO:0030131;clathrin adaptor complex;0.00396168186234532!GO:0016251;general RNA polymerase II transcription factor activity;0.00396168186234532!GO:0046148;pigment biosynthetic process;0.00396168186234532!GO:0006818;hydrogen transport;0.00396168186234532!GO:0030663;COPI coated vesicle membrane;0.00396168186234532!GO:0030126;COPI vesicle coat;0.00396168186234532!GO:0008312;7S RNA binding;0.00398273296075658!GO:0016049;cell growth;0.00402372558170391!GO:0003684;damaged DNA binding;0.00409342830149211!GO:0030880;RNA polymerase complex;0.00409633102973406!GO:0046483;heterocycle metabolic process;0.00423514091226086!GO:0030119;AP-type membrane coat adaptor complex;0.00443392458974973!GO:0001558;regulation of cell growth;0.00453525146100502!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00457414334831687!GO:0006289;nucleotide-excision repair;0.00479022212269354!GO:0006695;cholesterol biosynthetic process;0.0049711444967102!GO:0000059;protein import into nucleus, docking;0.00504556846999065!GO:0031123;RNA 3'-end processing;0.0052007623473141!GO:0006519;amino acid and derivative metabolic process;0.00526628747914177!GO:0015631;tubulin binding;0.00532106886649716!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00538313868080898!GO:0045047;protein targeting to ER;0.00538313868080898!GO:0016044;membrane organization and biogenesis;0.00548786079725292!GO:0043433;negative regulation of transcription factor activity;0.00548786079725292!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00553160241830332!GO:0030176;integral to endoplasmic reticulum membrane;0.00582593138006315!GO:0030660;Golgi-associated vesicle membrane;0.00589533836711814!GO:0043022;ribosome binding;0.00598430593714795!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00629317621536186!GO:0016741;transferase activity, transferring one-carbon groups;0.0066523914862703!GO:0030521;androgen receptor signaling pathway;0.00667540810454844!GO:0008168;methyltransferase activity;0.00690669556453377!GO:0022890;inorganic cation transmembrane transporter activity;0.00690669556453377!GO:0005869;dynactin complex;0.00707274732707971!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00746830596528845!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00746830596528845!GO:0008097;5S rRNA binding;0.0074719425195633!GO:0030137;COPI-coated vesicle;0.0074719425195633!GO:0008139;nuclear localization sequence binding;0.00750911980864946!GO:0009892;negative regulation of metabolic process;0.00764768808408742!GO:0030027;lamellipodium;0.00765317597821637!GO:0051098;regulation of binding;0.00790506594661015!GO:0006807;nitrogen compound metabolic process;0.00791551069400331!GO:0030132;clathrin coat of coated pit;0.00802814647651135!GO:0001726;ruffle;0.00818570967151139!GO:0051101;regulation of DNA binding;0.00824600477160566!GO:0008652;amino acid biosynthetic process;0.0082645950763645!GO:0006378;mRNA polyadenylation;0.00827247649558108!GO:0000096;sulfur amino acid metabolic process;0.00880784722430763!GO:0005874;microtubule;0.00890394954645052!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00897520009449759!GO:0000428;DNA-directed RNA polymerase complex;0.00897520009449759!GO:0009308;amine metabolic process;0.00898726104331502!GO:0009303;rRNA transcription;0.00951424991992844!GO:0007264;small GTPase mediated signal transduction;0.00953189798916355!GO:0005669;transcription factor TFIID complex;0.00972134801611882!GO:0044437;vacuolar part;0.00988296855038937!GO:0006595;polyamine metabolic process;0.0100491250558337!GO:0016860;intramolecular oxidoreductase activity;0.0100861932234886!GO:0006007;glucose catabolic process;0.0102845996007857!GO:0006261;DNA-dependent DNA replication;0.0107482566481477!GO:0042802;identical protein binding;0.010851678522776!GO:0003711;transcription elongation regulator activity;0.0108997603351716!GO:0006509;membrane protein ectodomain proteolysis;0.0109097671360912!GO:0033619;membrane protein proteolysis;0.0109097671360912!GO:0016272;prefoldin complex;0.0111879720163181!GO:0001666;response to hypoxia;0.0113798602527938!GO:0007034;vacuolar transport;0.0115053680748554!GO:0007021;tubulin folding;0.0118382518391784!GO:0031970;organelle envelope lumen;0.0120263588982076!GO:0006497;protein amino acid lipidation;0.0122654008510443!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0123310252219614!GO:0005765;lysosomal membrane;0.0124108461906479!GO:0048037;cofactor binding;0.0127046007774266!GO:0008180;signalosome;0.0127076426148199!GO:0046519;sphingoid metabolic process;0.0128448484501798!GO:0030384;phosphoinositide metabolic process;0.012948029471162!GO:0006405;RNA export from nucleus;0.0129747815047841!GO:0051540;metal cluster binding;0.013008010747088!GO:0051536;iron-sulfur cluster binding;0.013008010747088!GO:0042158;lipoprotein biosynthetic process;0.013121755186793!GO:0000786;nucleosome;0.0135499892203748!GO:0005832;chaperonin-containing T-complex;0.0136994976150689!GO:0005684;U2-dependent spliceosome;0.0145009331883188!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0145009331883188!GO:0004667;prostaglandin-D synthase activity;0.0145009331883188!GO:0050802;circadian sleep/wake cycle, sleep;0.0145009331883188!GO:0022410;circadian sleep/wake cycle process;0.0145009331883188!GO:0042749;regulation of circadian sleep/wake cycle;0.0145009331883188!GO:0006778;porphyrin metabolic process;0.0145009331883188!GO:0033013;tetrapyrrole metabolic process;0.0145009331883188!GO:0006643;membrane lipid metabolic process;0.0145009331883188!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0145090411784647!GO:0050681;androgen receptor binding;0.0146519333380661!GO:0006740;NADPH regeneration;0.0146519333380661!GO:0006098;pentose-phosphate shunt;0.0146519333380661!GO:0065009;regulation of a molecular function;0.0147731857475101!GO:0006144;purine base metabolic process;0.0147753408821963!GO:0006672;ceramide metabolic process;0.0148365997453098!GO:0000339;RNA cap binding;0.0152264278356894!GO:0051128;regulation of cellular component organization and biogenesis;0.0153541883344118!GO:0006376;mRNA splice site selection;0.0157701046847932!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0157701046847932!GO:0005758;mitochondrial intermembrane space;0.0163308288975861!GO:0006611;protein export from nucleus;0.0164484241485891!GO:0044438;microbody part;0.0164484241485891!GO:0044439;peroxisomal part;0.0164484241485891!GO:0008022;protein C-terminus binding;0.016983919804351!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0171779578166699!GO:0031369;translation initiation factor binding;0.0172166209585736!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0175449447697563!GO:0017166;vinculin binding;0.0185892525055538!GO:0009112;nucleobase metabolic process;0.0186056436687215!GO:0030134;ER to Golgi transport vesicle;0.0188911239956966!GO:0009116;nucleoside metabolic process;0.0194195815323486!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0196178265417082!GO:0030125;clathrin vesicle coat;0.0202416504701671!GO:0030665;clathrin coated vesicle membrane;0.0202416504701671!GO:0051052;regulation of DNA metabolic process;0.0204731241108503!GO:0005637;nuclear inner membrane;0.0208375183471056!GO:0000178;exosome (RNase complex);0.0210461579451212!GO:0006506;GPI anchor biosynthetic process;0.0212170005883767!GO:0050811;GABA receptor binding;0.021236720723041!GO:0008190;eukaryotic initiation factor 4E binding;0.0222911621764478!GO:0030127;COPII vesicle coat;0.0229008460747399!GO:0012507;ER to Golgi transport vesicle membrane;0.0229008460747399!GO:0031903;microbody membrane;0.0229464001128495!GO:0005778;peroxisomal membrane;0.0229464001128495!GO:0016481;negative regulation of transcription;0.0233049644945362!GO:0016197;endosome transport;0.024312168249703!GO:0000209;protein polyubiquitination;0.0243362170001668!GO:0004527;exonuclease activity;0.0243982242244032!GO:0006302;double-strand break repair;0.0250068574768864!GO:0003923;GPI-anchor transamidase activity;0.0250068574768864!GO:0016255;attachment of GPI anchor to protein;0.0250068574768864!GO:0042765;GPI-anchor transamidase complex;0.0250068574768864!GO:0033673;negative regulation of kinase activity;0.0252561691375476!GO:0006469;negative regulation of protein kinase activity;0.0252561691375476!GO:0005862;muscle thin filament tropomyosin;0.0255272939405065!GO:0009081;branched chain family amino acid metabolic process;0.0258507222115179!GO:0000097;sulfur amino acid biosynthetic process;0.0259900014081216!GO:0005996;monosaccharide metabolic process;0.0264012718752738!GO:0035035;histone acetyltransferase binding;0.02658137201406!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0267136760228826!GO:0015002;heme-copper terminal oxidase activity;0.0267136760228826!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0267136760228826!GO:0004129;cytochrome-c oxidase activity;0.0267136760228826!GO:0045045;secretory pathway;0.0269124379583899!GO:0004532;exoribonuclease activity;0.0271235896316715!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0271235896316715!GO:0008234;cysteine-type peptidase activity;0.0271235896316715!GO:0016615;malate dehydrogenase activity;0.0273049303422861!GO:0006733;oxidoreduction coenzyme metabolic process;0.027533599211426!GO:0030503;regulation of cell redox homeostasis;0.0284540771430048!GO:0006720;isoprenoid metabolic process;0.0291871473649277!GO:0006505;GPI anchor metabolic process;0.0294699085382599!GO:0009451;RNA modification;0.0297270882541915!GO:0016408;C-acyltransferase activity;0.0297363818521465!GO:0006979;response to oxidative stress;0.0298592546764813!GO:0030032;lamellipodium biogenesis;0.030271975257321!GO:0030100;regulation of endocytosis;0.0306605549952248!GO:0031901;early endosome membrane;0.0314837101932513!GO:0006417;regulation of translation;0.0315656011344724!GO:0006644;phospholipid metabolic process;0.0316676234878497!GO:0019318;hexose metabolic process;0.0316676234878497!GO:0030518;steroid hormone receptor signaling pathway;0.0335213102598874!GO:0045947;negative regulation of translational initiation;0.0337616137998668!GO:0006779;porphyrin biosynthetic process;0.0338479154764887!GO:0033014;tetrapyrrole biosynthetic process;0.0338479154764887!GO:0016791;phosphoric monoester hydrolase activity;0.0341229145530376!GO:0042168;heme metabolic process;0.0345176454535389!GO:0006220;pyrimidine nucleotide metabolic process;0.0351248857539917!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0354205198378669!GO:0030145;manganese ion binding;0.0356308139309581!GO:0043631;RNA polyadenylation;0.0356308139309581!GO:0017134;fibroblast growth factor binding;0.0358384483765136!GO:0007041;lysosomal transport;0.0358713608548981!GO:0007004;telomere maintenance via telomerase;0.0374030513378439!GO:0003678;DNA helicase activity;0.0374708875208265!GO:0042769;DNA damage response, detection of DNA damage;0.0374708875208265!GO:0004192;cathepsin D activity;0.0376218042259318!GO:0006400;tRNA modification;0.0377720377344053!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.037898395250807!GO:0006767;water-soluble vitamin metabolic process;0.0380053731246008!GO:0030508;thiol-disulfide exchange intermediate activity;0.0388434401520934!GO:0006984;ER-nuclear signaling pathway;0.0390289993007989!GO:0033559;unsaturated fatty acid metabolic process;0.0392152992257581!GO:0006636;unsaturated fatty acid biosynthetic process;0.0392152992257581!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0398726607837123!GO:0051348;negative regulation of transferase activity;0.0404461031862863!GO:0044255;cellular lipid metabolic process;0.0404724107253027!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0412264887968423!GO:0040008;regulation of growth;0.0414745151887957!GO:0045862;positive regulation of proteolysis;0.0424589331305869!GO:0005819;spindle;0.0424589331305869!GO:0048144;fibroblast proliferation;0.0428009864828754!GO:0048145;regulation of fibroblast proliferation;0.0428009864828754!GO:0030149;sphingolipid catabolic process;0.0430805299671546!GO:0008637;apoptotic mitochondrial changes;0.0437739588615465!GO:0003682;chromatin binding;0.0437739588615465!GO:0005784;translocon complex;0.0439756029070519!GO:0016584;nucleosome positioning;0.0441080077872403!GO:0003702;RNA polymerase II transcription factor activity;0.0441197469760901!GO:0008320;protein transmembrane transporter activity;0.0441725607852359!GO:0022408;negative regulation of cell-cell adhesion;0.04449306005849!GO:0008632;apoptotic program;0.0447664542203707!GO:0006066;alcohol metabolic process;0.045061930624349!GO:0000075;cell cycle checkpoint;0.0452277685412108!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0454670020089602!GO:0007243;protein kinase cascade;0.0467599726005352!GO:0022884;macromolecule transmembrane transporter activity;0.0469882617261435!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0469882617261435!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0469882617261435!GO:0045039;protein import into mitochondrial inner membrane;0.0469882617261435!GO:0008538;proteasome activator activity;0.0470215485079432!GO:0031575;G1/S transition checkpoint;0.0473263723524319!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0473519992345749!GO:0048146;positive regulation of fibroblast proliferation;0.0473519992345749!GO:0015036;disulfide oxidoreductase activity;0.0478972324629217!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0480602975165494!GO:0006739;NADP metabolic process;0.0482921126332039!GO:0006892;post-Golgi vesicle-mediated transport;0.048626849870648!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0486516048366776!GO:0006635;fatty acid beta-oxidation;0.0489277888053499!GO:0005732;small nucleolar ribonucleoprotein complex;0.0489277888053499!GO:0045941;positive regulation of transcription;0.0489277888053499!GO:0006360;transcription from RNA polymerase I promoter;0.0495350799151062!GO:0008287;protein serine/threonine phosphatase complex;0.0498212005048223!GO:0006661;phosphatidylinositol biosynthetic process;0.0498393749086726!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0498398175456913!GO:0031529;ruffle organization and biogenesis;0.049864011728639!GO:0031323;regulation of cellular metabolic process;0.0498870879758183 | |||
|sample_id=11689 | |sample_id=11689 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=HOX{A6,A7,B6,B7}:2.3380136313;bHLH_family:2.13861081923;CRX:1.8579068626;MYOD1:1.82739808369;NKX2-1,4:1.41975001485;NANOG:1.33052991749;EN1,2:1.29920994634;NR3C1:1.28025603887;PAX1,9:1.15881046658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.08086196925;RXR{A,B,G}:1.03822003924;PAX8:1.00635883071;EBF1:0.994424267142;ADNP_IRX_SIX_ZHX:0.972811114742;SREBF1,2:0.950591897996;SOX17:0.944346684071;RFX1:0.931233558205;SMAD1..7,9:0.910599845692;TLX1..3_NFIC{dimer}:0.868306950862;ZNF148:0.839666044379;LHX3,4:0.815143495045;ESRRA:0.79193029875;RBPJ:0.78895763795;HOXA9_MEIS1:0.709554443025;ZEB1:0.684269421289;TEAD1:0.670125489329;TFAP4:0.651654297908;GTF2A1,2:0.648795409825;PAX5:0.586734842498;GLI1..3:0.584518993309;NKX6-1,2:0.579472761231;VSX1,2:0.553099729664;HSF1,2:0.545604779256;ELK1,4_GABP{A,B1}:0.523257505133;JUN:0.510325017175;TFAP2{A,C}:0.482432426832;ZNF143:0.480186484404;EVI1:0.479586332416;ZBTB6:0.478167977608;ARID5B:0.46815223638;NFIL3:0.454632410301;CDC5L:0.453621970549;HES1:0.452490559062;LMO2:0.449207252856;NFE2L1:0.435107023907;STAT5{A,B}:0.427585637683;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.420816893941;NR6A1:0.395675907859;TBP:0.393964779238;PRRX1,2:0.381277388639;PATZ1:0.362654538986;HIF1A:0.330034001534;CEBPA,B_DDIT3:0.325005906935;HAND1,2:0.324079286626;PBX1:0.317795401252;TEF:0.314495424411;T:0.312668321232;SP1:0.294077212026;NRF1:0.273922095444;NKX2-2,8:0.270347152174;MAFB:0.258755792725;MYFfamily:0.255147226632;SNAI1..3:0.254055597837;HNF4A_NR2F1,2:0.244798438588;TP53:0.243693108461;MEF2{A,B,C,D}:0.238878145772;ZNF423:0.223238816836;ALX1:0.219549900714;AIRE:0.216752483161;SOX2:0.206102203595;STAT1,3:0.201234252461;IKZF1:0.18129572246;ZIC1..3:0.180317523508;TAL1_TCF{3,4,12}:0.177588382005;ATF4:0.167447031422;YY1:0.161433675284;FOSL2:0.139659941463;ATF2:0.13698281635;NHLH1,2:0.126688989736;ONECUT1,2:0.0979383139334;AHR_ARNT_ARNT2:0.0886563646502;KLF4:0.0874119435334;GFI1B:0.0865309936148;PDX1:0.0854637609255;GTF2I:0.0788000910387;MTE{core}:0.0697923857037;FOX{D1,D2}:0.0681779891719;HIC1:0.0575956139523;SPZ1:0.0543601470711;MTF1:0.0291414768054;RFX2..5_RFXANK_RFXAP:0.0253687755787;PPARG:0.0230295928032;TFCP2:0.00981568441276;NR5A1,2:0.00726037482316;HLF:0.00392693144911;SOX{8,9,10}:0.00197183445248;UFEwm:0.00196264943297;REST:0.00102322806183;SRF:-0.00387238966186;GFI1:-0.00642180095166;NFIX:-0.00891362414466;SOX5:-0.00972219802868;HNF1A:-0.0200726056333;XBP1:-0.0221181086807;FOS_FOS{B,L1}_JUN{B,D}:-0.0293491290059;ZFP161:-0.0310378270842;E2F1..5:-0.0355014028408;PAX6:-0.0444521858454;BACH2:-0.0460829278575;HOX{A5,B5}:-0.0517751220058;MAZ:-0.0529346383613;FOXL1:-0.0617974421946;RREB1:-0.081494380683;NKX3-1:-0.0928637926317;MYBL2:-0.10747493212;FOX{F1,F2,J1}:-0.10855136914;NFATC1..3:-0.114033923231;POU6F1:-0.115351353579;FOX{I1,J2}:-0.137008716164;GATA6:-0.14578440643;ALX4:-0.146039656135;CUX2:-0.153765729032;NFE2:-0.154377151082;OCT4_SOX2{dimer}:-0.155539741613;FOXM1:-0.161453062754;NR1H4:-0.167882839898;TBX4,5:-0.171363612086;TFAP2B:-0.174619654141;PRDM1:-0.175260996311;RXRA_VDR{dimer}:-0.178921443681;HMGA1,2:-0.223122686917;CDX1,2,4:-0.224868095562;FOXQ1:-0.229495336379;NFY{A,B,C}:-0.235850107789;HOX{A4,D4}:-0.236276298912;FOXN1:-0.239903658809;TFDP1:-0.255046448544;FOXD3:-0.256749528354;HBP1_HMGB_SSRP1_UBTF:-0.267482846902;MYB:-0.271426666779;GCM1,2:-0.286265166751;LEF1_TCF7_TCF7L1,2:-0.300383970704;NFKB1_REL_RELA:-0.31907617412;FOXA2:-0.332581731003;NKX3-2:-0.353313023998;FOXO1,3,4:-0.379929489561;RORA:-0.383953535124;XCPE1{core}:-0.390918330496;AR:-0.405194386334;GZF1:-0.409870075935;POU3F1..4:-0.411526603231;EGR1..3:-0.414225848738;MZF1:-0.417752707325;NKX2-3_NKX2-5:-0.443530452279;FOXP3:-0.443799553489;PAX2:-0.44952739264;MED-1{core}:-0.476528944093;CREB1:-0.481082828996;BPTF:-0.490451135851;RUNX1..3:-0.494027307219;ESR1:-0.515290574277;IKZF2:-0.526006007647;ZNF238:-0.555545491614;ELF1,2,4:-0.572488385299;SPIB:-0.575439573576;ETS1,2:-0.583013457098;PAX4:-0.593581939079;POU1F1:-0.613131996006;HMX1:-0.645151662718;DBP:-0.647281200965;GATA4:-0.647640244447;POU2F1..3:-0.651837780683;NFE2L2:-0.666427691597;SPI1:-0.670259893862;ATF5_CREB3:-0.680715999471;EP300:-0.680869801047;POU5F1:-0.680968799628;STAT2,4,6:-0.687233411232;TOPORS:-0.702235576254;DMAP1_NCOR{1,2}_SMARC:-0.796313194714;TGIF1:-0.803680980767;IRF7:-0.842338627958;FOXP1:-0.876358659372;IRF1,2:-0.916156822185;TLX2:-0.923405154024;PITX1..3:-0.927451853266;BREu{core}:-0.931289050114;PAX3,7:-0.962153780433;ZNF384:-1.02669805313;ZBTB16:-1.04136618715;ATF6:-1.16100010966;NANOG{mouse}:-1.3235861872 | |top_motifs=HOX{A6,A7,B6,B7}:2.3380136313;bHLH_family:2.13861081923;CRX:1.8579068626;MYOD1:1.82739808369;NKX2-1,4:1.41975001485;NANOG:1.33052991749;EN1,2:1.29920994634;NR3C1:1.28025603887;PAX1,9:1.15881046658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.08086196925;RXR{A,B,G}:1.03822003924;PAX8:1.00635883071;EBF1:0.994424267142;ADNP_IRX_SIX_ZHX:0.972811114742;SREBF1,2:0.950591897996;SOX17:0.944346684071;RFX1:0.931233558205;SMAD1..7,9:0.910599845692;TLX1..3_NFIC{dimer}:0.868306950862;ZNF148:0.839666044379;LHX3,4:0.815143495045;ESRRA:0.79193029875;RBPJ:0.78895763795;HOXA9_MEIS1:0.709554443025;ZEB1:0.684269421289;TEAD1:0.670125489329;TFAP4:0.651654297908;GTF2A1,2:0.648795409825;PAX5:0.586734842498;GLI1..3:0.584518993309;NKX6-1,2:0.579472761231;VSX1,2:0.553099729664;HSF1,2:0.545604779256;ELK1,4_GABP{A,B1}:0.523257505133;JUN:0.510325017175;TFAP2{A,C}:0.482432426832;ZNF143:0.480186484404;EVI1:0.479586332416;ZBTB6:0.478167977608;ARID5B:0.46815223638;NFIL3:0.454632410301;CDC5L:0.453621970549;HES1:0.452490559062;LMO2:0.449207252856;NFE2L1:0.435107023907;STAT5{A,B}:0.427585637683;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.420816893941;NR6A1:0.395675907859;TBP:0.393964779238;PRRX1,2:0.381277388639;PATZ1:0.362654538986;HIF1A:0.330034001534;CEBPA,B_DDIT3:0.325005906935;HAND1,2:0.324079286626;PBX1:0.317795401252;TEF:0.314495424411;T:0.312668321232;SP1:0.294077212026;NRF1:0.273922095444;NKX2-2,8:0.270347152174;MAFB:0.258755792725;MYFfamily:0.255147226632;SNAI1..3:0.254055597837;HNF4A_NR2F1,2:0.244798438588;TP53:0.243693108461;MEF2{A,B,C,D}:0.238878145772;ZNF423:0.223238816836;ALX1:0.219549900714;AIRE:0.216752483161;SOX2:0.206102203595;STAT1,3:0.201234252461;IKZF1:0.18129572246;ZIC1..3:0.180317523508;TAL1_TCF{3,4,12}:0.177588382005;ATF4:0.167447031422;YY1:0.161433675284;FOSL2:0.139659941463;ATF2:0.13698281635;NHLH1,2:0.126688989736;ONECUT1,2:0.0979383139334;AHR_ARNT_ARNT2:0.0886563646502;KLF4:0.0874119435334;GFI1B:0.0865309936148;PDX1:0.0854637609255;GTF2I:0.0788000910387;MTE{core}:0.0697923857037;FOX{D1,D2}:0.0681779891719;HIC1:0.0575956139523;SPZ1:0.0543601470711;MTF1:0.0291414768054;RFX2..5_RFXANK_RFXAP:0.0253687755787;PPARG:0.0230295928032;TFCP2:0.00981568441276;NR5A1,2:0.00726037482316;HLF:0.00392693144911;SOX{8,9,10}:0.00197183445248;UFEwm:0.00196264943297;REST:0.00102322806183;SRF:-0.00387238966186;GFI1:-0.00642180095166;NFIX:-0.00891362414466;SOX5:-0.00972219802868;HNF1A:-0.0200726056333;XBP1:-0.0221181086807;FOS_FOS{B,L1}_JUN{B,D}:-0.0293491290059;ZFP161:-0.0310378270842;E2F1..5:-0.0355014028408;PAX6:-0.0444521858454;BACH2:-0.0460829278575;HOX{A5,B5}:-0.0517751220058;MAZ:-0.0529346383613;FOXL1:-0.0617974421946;RREB1:-0.081494380683;NKX3-1:-0.0928637926317;MYBL2:-0.10747493212;FOX{F1,F2,J1}:-0.10855136914;NFATC1..3:-0.114033923231;POU6F1:-0.115351353579;FOX{I1,J2}:-0.137008716164;GATA6:-0.14578440643;ALX4:-0.146039656135;CUX2:-0.153765729032;NFE2:-0.154377151082;OCT4_SOX2{dimer}:-0.155539741613;FOXM1:-0.161453062754;NR1H4:-0.167882839898;TBX4,5:-0.171363612086;TFAP2B:-0.174619654141;PRDM1:-0.175260996311;RXRA_VDR{dimer}:-0.178921443681;HMGA1,2:-0.223122686917;CDX1,2,4:-0.224868095562;FOXQ1:-0.229495336379;NFY{A,B,C}:-0.235850107789;HOX{A4,D4}:-0.236276298912;FOXN1:-0.239903658809;TFDP1:-0.255046448544;FOXD3:-0.256749528354;HBP1_HMGB_SSRP1_UBTF:-0.267482846902;MYB:-0.271426666779;GCM1,2:-0.286265166751;LEF1_TCF7_TCF7L1,2:-0.300383970704;NFKB1_REL_RELA:-0.31907617412;FOXA2:-0.332581731003;NKX3-2:-0.353313023998;FOXO1,3,4:-0.379929489561;RORA:-0.383953535124;XCPE1{core}:-0.390918330496;AR:-0.405194386334;GZF1:-0.409870075935;POU3F1..4:-0.411526603231;EGR1..3:-0.414225848738;MZF1:-0.417752707325;NKX2-3_NKX2-5:-0.443530452279;FOXP3:-0.443799553489;PAX2:-0.44952739264;MED-1{core}:-0.476528944093;CREB1:-0.481082828996;BPTF:-0.490451135851;RUNX1..3:-0.494027307219;ESR1:-0.515290574277;IKZF2:-0.526006007647;ZNF238:-0.555545491614;ELF1,2,4:-0.572488385299;SPIB:-0.575439573576;ETS1,2:-0.583013457098;PAX4:-0.593581939079;POU1F1:-0.613131996006;HMX1:-0.645151662718;DBP:-0.647281200965;GATA4:-0.647640244447;POU2F1..3:-0.651837780683;NFE2L2:-0.666427691597;SPI1:-0.670259893862;ATF5_CREB3:-0.680715999471;EP300:-0.680869801047;POU5F1:-0.680968799628;STAT2,4,6:-0.687233411232;TOPORS:-0.702235576254;DMAP1_NCOR{1,2}_SMARC:-0.796313194714;TGIF1:-0.803680980767;IRF7:-0.842338627958;FOXP1:-0.876358659372;IRF1,2:-0.916156822185;TLX2:-0.923405154024;PITX1..3:-0.927451853266;BREu{core}:-0.931289050114;PAX3,7:-0.962153780433;ZNF384:-1.02669805313;ZBTB16:-1.04136618715;ATF6:-1.16100010966;NANOG{mouse}:-1.3235861872 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11689-122I6;search_select_hide=table117:FF:11689-122I6 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Retinal Pigment Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12733 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12733
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12733
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.622 |
| 10 | 10 | 0.00906 |
| 100 | 100 | 0.308 |
| 101 | 101 | 0.366 |
| 102 | 102 | 0.723 |
| 103 | 103 | 0.537 |
| 104 | 104 | 0.922 |
| 105 | 105 | 0.545 |
| 106 | 106 | 0.0535 |
| 107 | 107 | 0.864 |
| 108 | 108 | 0.777 |
| 109 | 109 | 0.123 |
| 11 | 11 | 0.455 |
| 110 | 110 | 0.552 |
| 111 | 111 | 0.0919 |
| 112 | 112 | 0.133 |
| 113 | 113 | 0.00982 |
| 114 | 114 | 0.405 |
| 115 | 115 | 0.284 |
| 116 | 116 | 0.935 |
| 117 | 117 | 0.153 |
| 118 | 118 | 0.293 |
| 119 | 119 | 0.069 |
| 12 | 12 | 0.696 |
| 120 | 120 | 0.75 |
| 121 | 121 | 0.9 |
| 122 | 122 | 0.149 |
| 123 | 123 | 5.88927e-4 |
| 124 | 124 | 0.822 |
| 125 | 125 | 0.262 |
| 126 | 126 | 0.333 |
| 127 | 127 | 0.456 |
| 128 | 128 | 0.177 |
| 129 | 129 | 0.782 |
| 13 | 13 | 0.588 |
| 130 | 130 | 0.117 |
| 131 | 131 | 0.506 |
| 132 | 132 | 0.758 |
| 133 | 133 | 0.98 |
| 134 | 134 | 0.642 |
| 135 | 135 | 0.0376 |
| 136 | 136 | 0.442 |
| 137 | 137 | 0.605 |
| 138 | 138 | 0.0133 |
| 139 | 139 | 0.524 |
| 14 | 14 | 0.502 |
| 140 | 140 | 0.486 |
| 141 | 141 | 0.183 |
| 142 | 142 | 0.598 |
| 143 | 143 | 0.298 |
| 144 | 144 | 0.331 |
| 145 | 145 | 0.963 |
| 146 | 146 | 0.949 |
| 147 | 147 | 0.7 |
| 148 | 148 | 0.131 |
| 149 | 149 | 0.0329 |
| 15 | 15 | 0.796 |
| 150 | 150 | 0.269 |
| 151 | 151 | 0.305 |
| 152 | 152 | 0.0167 |
| 153 | 153 | 0.21 |
| 154 | 154 | 0.269 |
| 155 | 155 | 0.079 |
| 156 | 156 | 0.0688 |
| 157 | 157 | 0.0412 |
| 158 | 158 | 0.0123 |
| 159 | 159 | 0.305 |
| 16 | 16 | 0.192 |
| 160 | 160 | 0.976 |
| 161 | 161 | 0.606 |
| 162 | 162 | 0.294 |
| 163 | 163 | 0.572 |
| 164 | 164 | 0.351 |
| 165 | 165 | 0.215 |
| 166 | 166 | 0.881 |
| 167 | 167 | 0.215 |
| 168 | 168 | 0.695 |
| 169 | 169 | 0.536 |
| 17 | 17 | 0.623 |
| 18 | 18 | 0.717 |
| 19 | 19 | 0.742 |
| 2 | 2 | 0.884 |
| 20 | 20 | 0.152 |
| 21 | 21 | 0.787 |
| 22 | 22 | 0.316 |
| 23 | 23 | 0.299 |
| 24 | 24 | 0.9 |
| 25 | 25 | 0.955 |
| 26 | 26 | 0.0983 |
| 27 | 27 | 0.607 |
| 28 | 28 | 0.49 |
| 29 | 29 | 0.746 |
| 3 | 3 | 0.0999 |
| 30 | 30 | 0.0715 |
| 31 | 31 | 0.774 |
| 32 | 32 | 0.175 |
| 33 | 33 | 0.314 |
| 34 | 34 | 0.718 |
| 35 | 35 | 0.547 |
| 36 | 36 | 0.827 |
| 37 | 37 | 0.14 |
| 38 | 38 | 0.301 |
| 39 | 39 | 0.338 |
| 4 | 4 | 0.985 |
| 40 | 40 | 0.0689 |
| 41 | 41 | 0.0713 |
| 42 | 42 | 0.11 |
| 43 | 43 | 0.242 |
| 44 | 44 | 0.705 |
| 45 | 45 | 0.144 |
| 46 | 46 | 0.192 |
| 47 | 47 | 0.801 |
| 48 | 48 | 0.688 |
| 49 | 49 | 0.225 |
| 5 | 5 | 0.483 |
| 50 | 50 | 0.964 |
| 51 | 51 | 0.712 |
| 52 | 52 | 0.944 |
| 53 | 53 | 0.259 |
| 54 | 54 | 0.425 |
| 55 | 55 | 0.904 |
| 56 | 56 | 0.793 |
| 57 | 57 | 0.9 |
| 58 | 58 | 0.185 |
| 59 | 59 | 0.504 |
| 6 | 6 | 0.814 |
| 60 | 60 | 0.12 |
| 61 | 61 | 0.527 |
| 62 | 62 | 0.232 |
| 63 | 63 | 0.319 |
| 64 | 64 | 0.895 |
| 65 | 65 | 0.442 |
| 66 | 66 | 0.603 |
| 67 | 67 | 0.865 |
| 68 | 68 | 0.94 |
| 69 | 69 | 0.115 |
| 7 | 7 | 0.385 |
| 70 | 70 | 0.672 |
| 71 | 71 | 0.591 |
| 72 | 72 | 0.307 |
| 73 | 73 | 0.0849 |
| 74 | 74 | 0.657 |
| 75 | 75 | 0.845 |
| 76 | 76 | 0.00585 |
| 77 | 77 | 0.362 |
| 78 | 78 | 0.208 |
| 79 | 79 | 0.438 |
| 8 | 8 | 0.713 |
| 80 | 80 | 0.954 |
| 81 | 81 | 0.44 |
| 82 | 82 | 0.4 |
| 83 | 83 | 0.0247 |
| 84 | 84 | 0.289 |
| 85 | 85 | 0.481 |
| 86 | 86 | 0.502 |
| 87 | 87 | 0.265 |
| 88 | 88 | 0.514 |
| 89 | 89 | 0.512 |
| 9 | 9 | 0.929 |
| 90 | 90 | 0.393 |
| 91 | 91 | 0.12 |
| 92 | 92 | 0.531 |
| 93 | 93 | 0.631 |
| 94 | 94 | 0.355 |
| 95 | 95 | 0.00491 |
| 96 | 96 | 0.881 |
| 97 | 97 | 0.371 |
| 98 | 98 | 0.0867 |
| 99 | 99 | 0.113 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12733
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000158 human retinal pigment epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000255 (eukaryotic cell)
0000149 (visual pigment cell)
0002586 (retinal pigment epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0005388 (photoreceptor array)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0001781 (layer of retina)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001782 (pigmented layer of retina)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000158 (human retinal pigment epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
