FF:11746-123F9: Difference between revisions

Latest revision as of 18:17, 4 June 2020

Name:	Schwann, donor2
Species:	Mouse (Mus musculus)
Library ID:	CNhs12573
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	peripheral nervous system
dev stage	NA
sex	NA
age	NA
cell type	schwann cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4232
catalog number	M4100
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005863

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12573		CAGE		DRX008853		DRR009725

Accession ID Mm9

Library id		BAM		CTSS
CNhs12573		DRZ001150		DRZ002535

Accession ID Mm10

Library id		BAM		CTSS
CNhs12573		DRZ012500		DRZ013885

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12573

0	0
1	0.0316
10	0
100	0
1000	0
1001	-0.0286
1002	0.0101
1003	-0.151
1004	0
1005	-0.0389
1006	0.0316
1007	-0.0466
1008	0
1009	-0.129
101	0.027
1010	0
1011	-0.132
1012	0
1013	0.0119
1014	-0.0535
1015	-0.0463
1016	0.079
1017	0
1018	0
1019	0
102	0
1020	0.0316
1021	0.0887
1022	-0.315
1023	0
1024	0
1025	0
1026	0
1027	0.157
1028	0
1029	-0.116
103	-0.0578
1030	0
1031	0.0976
1032	0.321
1033	-0.0197
1034	0
1035	0.0202
1036	-0.018
1037	0
1038	0.013
1039	-0.28
104	0
1040	-0.00617
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12573

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.497
MA0003.1	MA0003.1	0.648
MA0004.1	MA0004.1	0.623
MA0006.1	MA0006.1	0.801
MA0007.1	MA0007.1	0.146
MA0009.1	MA0009.1	0.0119
MA0014.1	MA0014.1	0.0651
MA0017.1	MA0017.1	1.26118e-5
MA0018.2	MA0018.2	2.72458e-5
MA0019.1	MA0019.1	0.749
MA0024.1	MA0024.1	0.109
MA0025.1	MA0025.1	0.314
MA0027.1	MA0027.1	0.108
MA0028.1	MA0028.1	0.0202
MA0029.1	MA0029.1	0.757
MA0030.1	MA0030.1	0.232
MA0031.1	MA0031.1	0.486
MA0035.2	MA0035.2	0.00131
MA0038.1	MA0038.1	0.0432
MA0039.2	MA0039.2	0.00671
MA0040.1	MA0040.1	0.899
MA0041.1	MA0041.1	0.389
MA0042.1	MA0042.1	0.73
MA0043.1	MA0043.1	0.173
MA0046.1	MA0046.1	5.39693e-16
MA0047.2	MA0047.2	0.00144
MA0048.1	MA0048.1	0.342
MA0050.1	MA0050.1	0.0787
MA0051.1	MA0051.1	0.482
MA0052.1	MA0052.1	0.797
MA0055.1	MA0055.1	0.0359
MA0057.1	MA0057.1	0.379
MA0058.1	MA0058.1	0.128
MA0059.1	MA0059.1	0.371
MA0060.1	MA0060.1	0.00636
MA0061.1	MA0061.1	0.0617
MA0062.2	MA0062.2	0.0101
MA0065.2	MA0065.2	0.00249
MA0066.1	MA0066.1	0.366
MA0067.1	MA0067.1	0.0139
MA0068.1	MA0068.1	0.285
MA0069.1	MA0069.1	0.0958
MA0070.1	MA0070.1	0.939
MA0071.1	MA0071.1	0.144
MA0072.1	MA0072.1	0.18
MA0073.1	MA0073.1	0.732
MA0074.1	MA0074.1	0.236
MA0076.1	MA0076.1	0.0291
MA0077.1	MA0077.1	0.0884
MA0078.1	MA0078.1	0.0207
MA0079.2	MA0079.2	0.194
MA0080.2	MA0080.2	0.017
MA0081.1	MA0081.1	0.512
MA0083.1	MA0083.1	0.0846
MA0084.1	MA0084.1	0.626
MA0087.1	MA0087.1	0.354
MA0088.1	MA0088.1	0.122
MA0090.1	MA0090.1	0.573
MA0091.1	MA0091.1	0.585
MA0092.1	MA0092.1	0.737
MA0093.1	MA0093.1	0.496
MA0099.2	MA0099.2	2.97131e-19
MA0100.1	MA0100.1	0.432
MA0101.1	MA0101.1	0.805
MA0102.2	MA0102.2	0.568
MA0103.1	MA0103.1	5.28631e-7
MA0104.2	MA0104.2	0.799
MA0105.1	MA0105.1	1.11067e-5
MA0106.1	MA0106.1	0.056
MA0107.1	MA0107.1	0.838
MA0108.2	MA0108.2	0.227
MA0111.1	MA0111.1	0.131
MA0112.2	MA0112.2	6.02138e-4
MA0113.1	MA0113.1	0.863
MA0114.1	MA0114.1	7.90889e-5
MA0115.1	MA0115.1	0.0852
MA0116.1	MA0116.1	6.53325e-4
MA0117.1	MA0117.1	0.408
MA0119.1	MA0119.1	0.102
MA0122.1	MA0122.1	0.401
MA0124.1	MA0124.1	0.866
MA0125.1	MA0125.1	0.696
MA0131.1	MA0131.1	0.245
MA0135.1	MA0135.1	0.838
MA0136.1	MA0136.1	0.12
MA0137.2	MA0137.2	0.0251
MA0138.2	MA0138.2	0.0405
MA0139.1	MA0139.1	0.00264
MA0140.1	MA0140.1	0.00341
MA0141.1	MA0141.1	0.0112
MA0142.1	MA0142.1	0.618
MA0143.1	MA0143.1	0.462
MA0144.1	MA0144.1	0.573
MA0145.1	MA0145.1	0.858
MA0146.1	MA0146.1	0.868
MA0147.1	MA0147.1	0.409
MA0148.1	MA0148.1	2.28806e-4
MA0149.1	MA0149.1	0.0563
MA0150.1	MA0150.1	0.0129
MA0152.1	MA0152.1	0.655
MA0153.1	MA0153.1	1.4627e-9
MA0154.1	MA0154.1	0.0227
MA0155.1	MA0155.1	0.11
MA0156.1	MA0156.1	0.55
MA0157.1	MA0157.1	0.472
MA0159.1	MA0159.1	0.105
MA0160.1	MA0160.1	0.303
MA0162.1	MA0162.1	0.948
MA0163.1	MA0163.1	8.92049e-4
MA0164.1	MA0164.1	0.671
MA0258.1	MA0258.1	0.00878
MA0259.1	MA0259.1	0.981

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12573

Novel motif	Logo	P-value
1	1	0.324
10	10	0.192
100	100	0.809
101	101	0.0445
102	102	0.838
103	103	0.0463
104	104	0.773
105	105	0.397
106	106	0.0488
107	107	0.0552
108	108	0.855
109	109	0.323
11	11	0.353
110	110	0.317
111	111	0.274
112	112	0.133
113	113	0.507
114	114	0.0757
115	115	0.441
116	116	0.763
117	117	0.607
118	118	0.507
119	119	0.0424
12	12	0.942
120	120	0.651
121	121	0.733
122	122	0.191
123	123	0.185
124	124	0.687
125	125	0.843
126	126	0.00916
127	127	0.229
128	128	0.0421
129	129	0.841
13	13	0.33
130	130	0.319
131	131	0.845
132	132	0.147
133	133	0.99
134	134	0.404
135	135	0.377
136	136	0.553
137	137	0.731
138	138	0.737
139	139	0.164
14	14	0.509
140	140	0.741
141	141	0.0497
142	142	0.574
143	143	0.616
144	144	0.37
145	145	0.0961
146	146	0.558
147	147	0.288
148	148	0.6
149	149	0.397
15	15	0.849
150	150	0.89
151	151	0.68
152	152	0.83
153	153	0.32
154	154	0.813
155	155	0.801
156	156	0.00133
157	157	0.599
158	158	0.516
159	159	0.00185
160	160	0.0116
161	161	0.883
162	162	0.508
163	163	0.266
164	164	0.27
165	165	0.939
166	166	0.819
167	167	0.791
168	168	0.112
169	169	0.199
17	17	0.183
18	18	0.615
19	19	0.149
2	2	0.289
20	20	0.513
21	21	0.952
22	22	0.552
23	23	0.201
24	24	0.782
25	25	0.826
26	26	0.0537
27	27	0.0997
28	28	0.889
29	29	0.584
3	3	0.12
30	30	0.562
31	31	0.669
32	32	0.203
33	33	0.995
34	34	0.327
35	35	0.0174
36	36	0.387
37	37	0.855
38	38	0.438
39	39	0.999
4	4	0.507
40	40	0.445
41	41	0.366
42	42	0.189
43	43	0.319
44	44	0.338
45	45	0.702
46	46	0.0375
47	47	0.502
48	48	0.324
49	49	0.284
5	5	0.518
50	50	0.984
51	51	0.563
52	52	0.401
53	53	0.462
54	54	0.722
55	55	0.945
56	56	0.68
57	57	0.313
58	58	0.148
59	59	0.0739
6	6	0.525
60	60	0.168
61	61	0.416
62	62	0.0953
63	63	0.42
64	64	0.19
65	65	0.381
66	66	0.144
67	67	0.279
68	68	0.0404
69	69	0.908
7	7	0.194
70	70	0.0819
71	71	0.0982
72	72	0.741
73	73	0.821
74	74	0.73
75	75	0.171
76	76	0.847
77	77	0.341
78	78	0.475
79	79	0.71
8	8	0.218
80	80	0.82
81	81	0.622
82	82	0.00545
83	83	0.508
84	84	0.921
85	85	0.261
86	86	0.271
87	87	0.0197
88	88	0.711
89	89	0.149
9	9	0.339
90	90	0.813
91	91	0.261
92	92	0.212
93	93	0.829
94	94	0.874
95	95	0.509
96	96	0.0814
97	97	0.213
98	98	0.164
99	99	0.171

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12573

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000116 mouse Schwann cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000325 (stuff accumulating cell)
0000215 (barrier cell)
0000630 (supportive cell)
0000217 (insulating cell)
0000328 (myelin accumulating cell)
0002573 (Schwann cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0002376 (non-myelinating Schwann cell)
0000218 (myelinating Schwann cell;;Schwann cell)
0000692 (terminal Schwann cell)
0002377 (immature Schwann cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000116 (mouse Schwann cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008743
+|DRA_sample_Accession=CAGE@SAMD00005863
-|accession_numbers=CAGE;DRX008853;DRR009725;DRZ001150;DRZ002535
+|accession_numbers=CAGE;DRX008853;DRR009725;DRZ001150;DRZ002535;DRZ012500;DRZ013885
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000325,CL:0000215,CL:0000630,CL:0000217,CL:0000328,CL:0002573,CL:0000125,CL:0000255,CL:0002376,CL:0000218,CL:0000692,CL:0002377
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:119913278..119913298,-!p2@Hmga2!2.06!245.08!Hmga2;;chr3:34548909..34548927,+!p1@Sox2!1.91!133.99!Sox2;;chr4:99322820..99322845,+!p1@Foxd3!1.87!92.58!Foxd3;;chr19:5447886..5447905,+!p1@Fosl1!1.85!69.75!Fosl1;;chr15:78994907..78994926,-!p1@Sox10!1.81!158.47!Sox10;;chr10:119913546..119913583,-!p3@Hmga2!1.76!115.70!Hmga2;;chr1:193007123..193007139,-!p1@Atf3!1.75!295.48!Atf3;;chr10:119913310..119913366,-!p1@Hmga2!1.74!400.98!Hmga2;;chr13:40829137..40829205,-!p1@Tfap2a!1.73!58.79!Tfap2a;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!1.68!111.69!Hmga1;;chr12:86814833..86814846,+!p1@Fos!1.59!840.58!Fos;;chr3:34548946..34548972,+!p2@Sox2!1.55!37.94!Sox2;;chr17:44951553..44951586,-!p2@Runx2!1.52!35.59!Runx2;;chr17:44951431..44951445,-!p3@Runx2!1.47!28.79!Runx2;;chr10:119913792..119913820,-!p5@Hmga2!1.46!47.08!Hmga2;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.39!30.08!Zbtb11;;chr10:119913266..119913277,-!p6@Hmga2!1.33!20.33!Hmga2;;chr5:138199361..138199441,+!p2@Tsc22d4!1.29!34.31!Tsc22d4;;chr17:44872561..44872615,-!p1@Runx2!1.28!40.20!Runx2;;chr17:27693746..27693759,+!p6@Hmga1-rs1,p7@Hmga1!1.27!34.54!Hmga1;;chr7:19895354..19895369,-!p1@Fosb!1.27!24.33!Fosb;;chr9:96653072..96653154,-!p1@Zbtb38!1.25!44.21!Zbtb38;;chr9:119893782..119893802,-!p1@Csrnp1!1.18!14.21!Csrnp1;;chr19:5447692..5447711,+!p2@Fosl1!1.18!13.98!Fosl1;;chr7:38558544..38558566,-!p4@Zfp536!1.17!15.72!Zfp536;;chr9:106356278..106356292,+!p3@Pcbp4!1.15!22.37!Pcbp4;;chr10:119914001..119914078,-!p4@Hmga2!1.14!17.38!Hmga2;;chr4:124334894..124334899,+!p1@Pou3f1!1.12!15.79!Pou3f1;;chr11:5761979..5761992,+!p2@Aebp1!1.10!23.35!Aebp1;;chr1:193041811..193041838,-!p2@Atf3!1.09!11.41!Atf3;;chr11:5761889..5761969,+!p1@Aebp1!1.06!443.38!Aebp1;;chr17:27693788..27693803,+!p3@Hmga1,p4@Hmga1-rs1!1.06!47.38!Hmga1;;chr13:40825465..40825469,-!p2@Tfap2a!1.06!10.50!Tfap2a;;chr10:114821393..114821431,-!p5@Thap2!1.05!28.41!Thap2;;chr10:119913954..119913972,-!p8@Hmga2!1.04!9.90!Hmga2;;chr4:94718861..94718872,-!p2@Jun!1.02!72.10!Jun;;chr4:99322855..99322867,+!p2@Foxd3!1.02!9.52!Foxd3;;chr4:99323046..99323073,+!p3@Foxd3!1.00!9.07!Foxd3;;chr13:40829337..40829360,-!p5@Tfap2a!0.96!8.09!Tfap2a;;chr4:94718879..94718898,-!p1@Jun!0.92!547.74!Jun;;chr2:173044380..173044432,-!p1@Zbp1!0.92!17.91!Zbp1;;chr17:27693818..27693830,+!p7@Hmga1-rs1,p8@Hmga1!0.91!16.47!Hmga1;;chr13:40826150..40826167,-!p3@Tfap2a!0.89!7.63!Tfap2a;;chr13:40825785..40825798,-!p9@Tfap2a!0.89!6.73!Tfap2a;;chr16:15887371..15887385,+!p1@Cebpd!0.88!234.12!Cebpd;;chr13:5860776..5860796,+!p1@Klf6!0.88!167.24!Klf6;;chr2:44965788..44965815,-!p11@Zeb2!0.88!12.77!Zeb2;;chr16:91270004..91270023,+!p1@Olig1!0.88!7.56!Olig1;;chr6:128250471..128250519,-!p1@Tead4!0.87!13.38!Tead4;;chr10:119913974..119913992,-!p9@Hmga2!0.85!6.12!Hmga2;;chr1:92895299..92895373,+!p2@Lrrfip1!0.83!128.24!Lrrfip1;;chr7:26067619..26067702,+!p2@Cic!0.83!34.54!Cic;;chr16:43363190..43363242,+!p2@Zbtb20!0.83!18.82!Zbtb20;;chr10:67000609..67000625,+!p1@Egr2!0.83!13.91!Egr2;;chr7:19895384..19895399,-!p2@Fosb!0.83!8.31!Fosb;;chr19:23215673..23215753,+!p1@Klf9!0.81!85.32!Klf9;;chr9:106356243..106356264,+!p2@Pcbp4!0.81!25.39!Pcbp4;;chr11:120624106..120624107,+!p13@Hmga1-rs1,p14@Hmga1!0.81!5.44!Hmga1;;chr8:87502608..87502623,-!p1@Junb!0.80!93.71!Junb;;chr9:106356265..106356276,+!p4@Pcbp4!0.80!9.07!Pcbp4;;chr2:44965761..44965785,-!p13@Zeb2!0.80!8.16!Zeb2;;chr10:119913839..119913869,-!p7@Hmga2!0.80!6.95!Hmga2;;chr14:104867201..104867258,-!p1@Pou4f1!0.79!7.56!Pou4f1;;chr2:44965856..44965896,-!p5@Zeb2!0.78!21.24!Zeb2;;chr2:31495237..31495243,+!p1@Prdm12!0.77!4.91!Prdm12;;chr18:83079981..83080037,+!p6@Zfp516!0.76!8.62!Zfp516;;chr3:34549096..34549111,+!p3@Sox2!0.76!4.76!Sox2;;chr9:106356211..106356242,+!p1@Pcbp4!0.75!98.85!Pcbp4;;chr13:5860872..5860883,+!p3@Klf6!0.75!9.75!Klf6;;chr6:128250521..128250543,-!p3@Tead4!0.75!7.71!Tead4;;chr10:119913301..119913302,-!p11@Hmga2!0.75!4.69!Hmga2;;chr8:125778192..125778217,+!p2@Zfp276!0.74!13.83!Zfp276;;chr17:44873599..44873623,-!p7@Runx2!0.74!4.46!Runx2;;chr7:38558574..38558611,-!p2@Zfp536!0.71!5.37!Zfp536;;chr18:35020854..35020869,+!p1@Egr1!0.69!172.61!Egr1;;chr7:38557752..38557793,-!p3@Zfp536!0.68!4.53!Zfp536;;chr13:40826100..40826108,-!p10@Tfap2a!0.68!3.78!Tfap2a;;chr17:27693622..27693635,+!p11@Hmga1-rs1,p12@Hmga1!0.67!4.84!Hmga1;;chr7:38557887..38557910,-!p5@Zfp536!0.66!3.55!Zfp536;;chr11:120624132..120624143,+!p10@Hmga1,p9@Hmga1-rs1!0.65!4.61!Hmga1;;chr17:27693558..27693580,+!p1@Hmga1-rs1,p1@Hmga1!0.64!182.88!Hmga1;;chr7:122968213..122968266,-!p4@Sox6!0.64!4.08!Sox6;;chr10:119913766..119913779,-!p10@Hmga2!0.64!3.33!Hmga2;;chr3:34548845..34548856,+!p4@Sox2!0.64!3.33!Sox2;;chr11:72990738..72990763,+!p2@LOC100047518,p2@Tax1bp3!0.63!21.39!Tax1bp3;;chr13:78339476..78339515,-!p1@Nr2f1!0.62!5.21!Nr2f1;;chr13:40826236..40826248,-!p8@Tfap2a!0.62!3.17!Tfap2a;;chr9:71743854..71743909,-!p1@Tcf12!0.61!28.87!Tcf12;;chr18:3281034..3281104,-!p1@Crem!0.61!26.22!Crem;;chr1:52176315..52176343,+!p1@Stat1!0.59!50.41!Stat1;;chr1:36364590..36364608,+!p1@Arid5a!0.59!35.97!Arid5a;;chr8:107694742..107694823,+!p3@Cbfb!0.59!20.56!Cbfb;;chr13:40824310..40824314,-!p6@Tfap2a!0.59!2.87!Tfap2a;;chr16:91225808..91225824,+!p1@Olig2!0.59!2.87!Olig2;;chr11:5761871..5761882,+!p3@Aebp1!0.58!8.54!Aebp1;;chr13:78339428..78339466,-!p2@Nr2f1!0.58!4.08!Nr2f1;;chr19:5637501..5637517,+!p4@Rela!0.57!13.30!Rela;;chr6:53523358..53523388,+!p1@Creb5!0.56!39.52!Creb5;;chr19:5637528..5637548,+!p2@Rela!0.56!19.12!Rela;;chr1:138521574..138521597,+!p3@Zfp281!0.55!7.18!Zfp281;;chr4:154010409..154010466,-!p2@Prdm16!0.55!7.03!Prdm16;;chr13:99124189..99124205,+!p1@Foxd1!0.55!4.31!Foxd1;;chr6:83020355..83020371,-!p1@Tlx2!0.55!2.57!Tlx2;;chr4:99323019..99323031,+!p4@Foxd3!0.55!2.57!Foxd3;;chr13:78338076..78338104,-!p4@Nr2f1!0.54!3.33!Nr2f1;;chr10:88996295..88996335,-!p3@Nr1h4!0.54!3.10!Nr1h4;;chr11:85646263..85646278,+!p2@Tbx2!0.53!7.18!Tbx2;;chr13:5860749..5860772,+!p2@Klf6!0.52!28.87!Klf6;;chr16:87699206..87699229,+!p3@Bach1!0.52!15.95!Bach1;;chr14:17407970..17408015,-!p2@Rarb!0.52!7.56!Rarb;;chr13:117099847..117099907,-!p1@Isl1!0.52!4.91!Isl1;;chr13:40826119..40826131,-!p7@Tfap2a!0.52!2.34!Tfap2a;;chr7:38559002..38559009,-!p15@Zfp536!0.52!2.34!Zfp536;;chr8:107694661..107694713,+!p2@Cbfb!0.51!19.20!Cbfb;;chr4:154010918..154010931,-!p1@Prdm16!0.51!7.94!Prdm16;;chr16:43363152..43363186,+!p3@Zbtb20!0.51!6.12!Zbtb20;;chr7:52960555..52960662,+!p1@Dbp!0.50!24.03!Dbp;;chr3:95032091..95032183,-!p1@Mllt11!0.50!23.88!Mllt11;;chr8:107694596..107694619,+!p4@Cbfb!0.50!7.78!Cbfb;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.50!6.35!Zbtb11;;chr19:19185671..19185693,-!p1@Rorb!0.50!6.27!Rorb;;chr1:135320989..135321043,-!p1@Sox13!0.49!30.61!Sox13;;chr15:101097270..101097290,+!p1@Nr4a1!0.49!28.26!Nr4a1;;chrX:137077716..137077734,-!p1@Tsc22d3!0.49!19.88!Tsc22d3;;chrX:7339938..7339963,+!p1@Tfe3!0.49!13.60!Tfe3;;chr17:71200967..71200983,-!p8@Tgif1!0.49!2.87!Tgif1;;chr17:71201096..71201114,-!p6@Tgif1!0.49!2.57!Tgif1;;chr17:44951598..44951609,-!p12@Runx2!0.49!2.12!Runx2;;chr14:56223010..56223067,+!p1@Irf9!0.48!21.08!Irf9;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.48!19.20!Hmga1;;chr7:26067242..26067273,+!p3@Cic!0.48!11.26!Cic;;chr1:52176378..52176401,+!p3@Stat1!0.48!7.56!Stat1;;chr12:74147689..74147711,-!p1@Six1!0.48!5.37!Six1;;chr2:173044357..173044377,-!p2@Zbp1!0.48!3.25!Zbp1;;chr16:87699237..87699279,+!p1@Bach1!0.47!27.36!Bach1;;chr8:107694628..107694659,+!p1@Cbfb!0.47!23.50!Cbfb;;chr1:135320962..135320981,-!p2@Sox13!0.47!8.39!Sox13;;chr11:85646303..85646329,+!p1@Tbx2!0.46!16.78!Tbx2;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.46!14.89!Zbtb11;;chr5:32438395..32438406,+!p3@Fosl2!0.46!3.33!Fosl2;;chr1:165243591..165243625,-!p2@Prrx1!0.46!3.25!Prrx1;;chr19:23215509..23215523,+!p4@Klf9!0.46!2.65!Klf9;;chr17:44872524..44872537,-!p9@Runx2!0.46!1.89!Runx2;;chr7:52071956..52071978,-!p1@Atf5!0.45!81.92!Atf5;;chr2:44968721..44968734,-!p6@Zeb2!0.45!8.92!Zeb2;;chr2:44965662..44965685,-!p9@Zeb2!0.45!5.29!Zeb2;;chr12:86815639..86815664,+!p2@Fos!0.45!1.81!Fos;;chr4:41678256..41678295,-!p1@Arid3c!0.45!1.81!Arid3c;;chr10:67599319..67599360,-!p2@Arid5b!0.44!26.90!Arid5b;;chr10:114821444..114821491,-!p1@Thap2!0.44!19.20!Thap2;;chr14:19071466..19071550,-!p1@Nr1d2!0.44!16.47!Nr1d2;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.44!2.80!Carhsp1;;chr17:44951539..44951544,-!p28@Runx2!0.44!1.74!Runx2;;chr17:44951365..44951368,-!p21@Runx2!0.44!1.74!Runx2;;chr17:71201050..71201078,-!p9@Tgif1!0.44!1.74!Tgif1;;chr7:38554684..38554696,-!p10@Zfp536!0.44!1.74!Zfp536;;chr18:5591866..5591900,+!p1@Zeb1!0.43!59.17!Zeb1;;chr7:28516417..28516460,+!p1@Zfp60!0.43!20.33!Zfp60;;chr7:148452314..148452329,-!p1@Irf7!0.43!16.55!Irf7;;chr2:44968775..44968795,-!p4@Zeb2!0.43!11.11!Zeb2;;chr4:154010940..154010962,-!p3@Prdm16!0.43!4.61!Prdm16;;chr14:52935788..52935817,-!p2@Sall2!0.43!4.61!Sall2;;chr7:26067803..26067814,+!p11@Cic!0.43!1.96!Cic;;chr4:22415443..22415506,-!p1@Pou3f2!0.43!1.66!Pou3f2;;chr9:32503590..32503680,+!p1@Ets1!0.42!86.15!Ets1;;chr7:26035739..26035757,-!p1@Erf!0.42!58.79!Erf;;chr7:20408047..20408125,-!p1@Bcl3!0.42!26.83!Bcl3;;chr1:138521528..138521572,+!p1@Zfp281!0.42!13.60!Zfp281;;chr6:39068181..39068206,-!p3@Parp12!0.42!4.23!Parp12;;chr6:145813964..145813994,-!p3@Bhlhe41!0.42!2.27!Bhlhe41;;chr13:78339382..78339420,-!p3@Nr2f1!0.42!2.04!Nr2f1;;chr12:77471524..77471607,+!p1@Zbtb1!0.41!29.70!Zbtb1;;chr2:44968737..44968758,-!p2@Zeb2!0.41!12.70!Zeb2;;chr16:92697560..92697592,-!p2@Runx1!0.40!13.60!Runx1;;chr7:91558392..91558434,-!p1@Arnt2!0.40!5.67!Arnt2;;chr19:5637489..5637500,+!p5@Rela!0.40!5.06!Rela;;chr17:71200415..71200427,-!p5@Tgif1!0.40!2.95!Tgif1;;chr18:5593345..5593349,+!p14@Zeb1!0.40!1.51!Zeb1;;chr7:77505617..77505632,-!p1@Nr2f2!0.39!103.91!Nr2f2;;chr18:5593564..5593584,+!p2@Zeb1!0.39!1.89!Zeb1;;chr18:3281015..3281028,-!p18@Crem!0.39!1.44!Crem;;chr1:136186574..136186592,+!p1@Myog!0.39!1.44!Myog;;chr3:34549144..34549155,+!p5@Sox2!0.39!1.44!Sox2;;chr13:29045559..29045574,-!p1@Sox4!0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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs12573
-|library_id_phase_based=1:CNhs12573
+|library_id_phase_based=2:CNhs12573
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11746
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11746
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Schwann%252c%2520donor2.CNhs12573.11746-123F9.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Schwann%252c%2520donor2.CNhs12573.11746-123F9.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Schwann%252c%2520donor2.CNhs12573.11746-123F9.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Schwann%252c%2520donor2.CNhs12573.11746-123F9.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Schwann%252c%2520donor2.CNhs12573.11746-123F9.mm9.nobarcode.rdna.fa.gz
 |name=Schwann, donor2
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12573,LSID917,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.0734238150468325,0,0,0,0,0,-0.0998092891934195,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.160254040644793,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.396028863220985,0,0,0,0,0,-0.0837539796507557,0.0316393102377815,-0.0223106705203464,-0.450402471697425,-0.269868638010351,0.114706451955019,0,0,0.0316393102377815,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0.081196964551523,0.0611293222874226,0.0611293222874226,0,-0.0571983664958883,-0.310650657339386,-0.126451732533301,-0.0801593373055954,0,-0.0780086007519514,0,0,0,0,-0.0233076726913007,-0.134406662545756,-0.00801101914041402,-0.047192284602126,0,0,0,0,0,0,-0.0724466925873073,-0.157707615021774,0.289930222892353,0,0,0.114706451955019,0,0
@@ Line 88: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11746-123F9;search_select_hide=table117:11746-123F9
 }}

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FF:11746-123F9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:17, 4 June 2020

CNhs12573

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0