FF:11788-124B6: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD14+CD16- Monocytes, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13224
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	5
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005516

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13224		CAGE		DRX008165		DRR009037

Accession ID Hg19

Library id		BAM		CTSS
CNhs13224		DRZ000462		DRZ001847

Accession ID Hg38

Library id		BAM		CTSS
CNhs13224		DRZ011812		DRZ013197

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.0462
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.102
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.374
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.088
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.088
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.154
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.524
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.194
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.224
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.088
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.541
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.304
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.155
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.511
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.194
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.303
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00732
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.194
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0462
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0144
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.025
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.619
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.901
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.41
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.526
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.751
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.439
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.278
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.467
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.327
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.469
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.681
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.387
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.41
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.999
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.156
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.455
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.873
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.859
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.494
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.126
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.119
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.0462
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0462
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.194
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.224
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.317
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13224

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.77261e-11
MA0003.1	MA0003.1	0.0839
MA0004.1	MA0004.1	0.64
MA0006.1	MA0006.1	0.917
MA0007.1	MA0007.1	0.83
MA0009.1	MA0009.1	0.267
MA0014.1	MA0014.1	0.428
MA0017.1	MA0017.1	0.0166
MA0018.2	MA0018.2	0.0063
MA0019.1	MA0019.1	0.352
MA0024.1	MA0024.1	0.00219
MA0025.1	MA0025.1	2.27203e-5
MA0027.1	MA0027.1	0.811
MA0028.1	MA0028.1	0.713
MA0029.1	MA0029.1	0.123
MA0030.1	MA0030.1	0.494
MA0031.1	MA0031.1	0.922
MA0035.2	MA0035.2	0.376
MA0038.1	MA0038.1	0.0886
MA0039.2	MA0039.2	0.353
MA0040.1	MA0040.1	0.228
MA0041.1	MA0041.1	0.687
MA0042.1	MA0042.1	0.287
MA0043.1	MA0043.1	7.75407e-10
MA0046.1	MA0046.1	0.138
MA0047.2	MA0047.2	0.342
MA0048.1	MA0048.1	0.899
MA0050.1	MA0050.1	1.74909e-9
MA0051.1	MA0051.1	3.91358e-4
MA0052.1	MA0052.1	0.186
MA0055.1	MA0055.1	0.85
MA0057.1	MA0057.1	0.601
MA0058.1	MA0058.1	0.39
MA0059.1	MA0059.1	0.529
MA0060.1	MA0060.1	9.27611e-8
MA0061.1	MA0061.1	6.00009e-5
MA0062.2	MA0062.2	4.95424e-4
MA0065.2	MA0065.2	0.0187
MA0066.1	MA0066.1	0.0446
MA0067.1	MA0067.1	2.26708e-5
MA0068.1	MA0068.1	0.444
MA0069.1	MA0069.1	0.635
MA0070.1	MA0070.1	0.0188
MA0071.1	MA0071.1	0.148
MA0072.1	MA0072.1	0.984
MA0073.1	MA0073.1	0.385
MA0074.1	MA0074.1	0.348
MA0076.1	MA0076.1	0.933
MA0077.1	MA0077.1	0.101
MA0078.1	MA0078.1	0.67
MA0079.2	MA0079.2	0.718
MA0080.2	MA0080.2	4.79165e-16
MA0081.1	MA0081.1	1.07846e-4
MA0083.1	MA0083.1	0.453
MA0084.1	MA0084.1	0.444
MA0087.1	MA0087.1	0.327
MA0088.1	MA0088.1	0.718
MA0090.1	MA0090.1	0.0439
MA0091.1	MA0091.1	0.709
MA0092.1	MA0092.1	0.654
MA0093.1	MA0093.1	0.686
MA0099.2	MA0099.2	1.77072e-11
MA0100.1	MA0100.1	0.88
MA0101.1	MA0101.1	0.00118
MA0102.2	MA0102.2	8.47201e-15
MA0103.1	MA0103.1	0.24
MA0104.2	MA0104.2	0.504
MA0105.1	MA0105.1	3.15515e-7
MA0106.1	MA0106.1	0.414
MA0107.1	MA0107.1	3.5333e-4
MA0108.2	MA0108.2	2.19885e-6
MA0111.1	MA0111.1	0.495
MA0112.2	MA0112.2	2.52136e-4
MA0113.1	MA0113.1	0.93
MA0114.1	MA0114.1	0.161
MA0115.1	MA0115.1	0.893
MA0116.1	MA0116.1	1.43203e-4
MA0117.1	MA0117.1	0.054
MA0119.1	MA0119.1	0.425
MA0122.1	MA0122.1	0.845
MA0124.1	MA0124.1	0.373
MA0125.1	MA0125.1	0.206
MA0131.1	MA0131.1	0.933
MA0135.1	MA0135.1	0.273
MA0136.1	MA0136.1	9.59547e-19
MA0137.2	MA0137.2	0.431
MA0138.2	MA0138.2	0.859
MA0139.1	MA0139.1	0.85
MA0140.1	MA0140.1	0.319
MA0141.1	MA0141.1	0.0386
MA0142.1	MA0142.1	0.395
MA0143.1	MA0143.1	0.762
MA0144.1	MA0144.1	0.245
MA0145.1	MA0145.1	0.233
MA0146.1	MA0146.1	0.0359
MA0147.1	MA0147.1	0.629
MA0148.1	MA0148.1	0.955
MA0149.1	MA0149.1	0.08
MA0150.1	MA0150.1	1.926e-8
MA0152.1	MA0152.1	0.13
MA0153.1	MA0153.1	0.0215
MA0154.1	MA0154.1	0.00184
MA0155.1	MA0155.1	0.805
MA0156.1	MA0156.1	1.20202e-12
MA0157.1	MA0157.1	0.469
MA0159.1	MA0159.1	0.0342
MA0160.1	MA0160.1	0.00982
MA0162.1	MA0162.1	0.593
MA0163.1	MA0163.1	8.52518e-8
MA0164.1	MA0164.1	0.731
MA0258.1	MA0258.1	0.00669
MA0259.1	MA0259.1	0.848

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13224

Novel motif	Logo	P-value
1	1	0.132
10	10	0.0179
100	100	0.943
101	101	0.516
102	102	0.614
103	103	0.284
104	104	0.674
105	105	0.157
106	106	0.00744
107	107	0.616
108	108	0.737
109	109	0.0695
11	11	0.153
110	110	0.305
111	111	0.0382
112	112	0.3
113	113	0.654
114	114	0.0138
115	115	0.14
116	116	0.856
117	117	0.028
118	118	0.0917
119	119	0.411
12	12	0.347
120	120	0.737
121	121	0.975
122	122	0.694
123	123	0.0388
124	124	0.875
125	125	0.215
126	126	0.176
127	127	0.256
128	128	0.0578
129	129	0.99
13	13	0.108
130	130	0.238
131	131	0.631
132	132	0.0263
133	133	0.676
134	134	0.568
135	135	0.137
136	136	0.801
137	137	1.19291e-4
138	138	0.121
139	139	0.0296
14	14	0.346
140	140	0.156
141	141	0.322
142	142	0.782
143	143	0.0398
144	144	0.724
145	145	0.798
146	146	0.691
147	147	0.347
148	148	0.0227
149	149	0.596
15	15	0.123
150	150	0.699
151	151	0.284
152	152	0.209
153	153	0.772
154	154	0.721
155	155	0.258
156	156	0.861
157	157	0.574
158	158	0.0422
159	159	0.888
16	16	0.426
160	160	0.519
161	161	0.531
162	162	0.258
163	163	0.99
164	164	0.0859
165	165	0.108
166	166	0.623
167	167	0.2
168	168	0.533
169	169	0.00821
17	17	0.292
18	18	0.141
19	19	0.25
2	2	0.984
20	20	0.534
21	21	0.639
22	22	0.201
23	23	0.147
24	24	0.204
25	25	0.186
26	26	0.025
27	27	0.577
28	28	0.572
29	29	0.0662
3	3	0.114
30	30	0.497
31	31	0.711
32	32	0.663
33	33	0.178
34	34	0.494
35	35	0.19
36	36	0.0593
37	37	0.0643
38	38	0.465
39	39	0.883
4	4	0.9
40	40	0.078
41	41	0.019
42	42	0.38
43	43	0.0903
44	44	0.988
45	45	0.88
46	46	0.217
47	47	0.516
48	48	0.409
49	49	0.127
5	5	0.12
50	50	0.944
51	51	0.334
52	52	0.42
53	53	0.277
54	54	0.402
55	55	0.572
56	56	0.775
57	57	0.798
58	58	0.093
59	59	0.174
6	6	0.795
60	60	0.0607
61	61	0.232
62	62	0.04
63	63	0.577
64	64	0.334
65	65	0.248
66	66	0.127
67	67	0.638
68	68	0.821
69	69	0.821
7	7	0.164
70	70	0.0355
71	71	0.0196
72	72	0.23
73	73	0.104
74	74	0.0807
75	75	0.064
76	76	0.199
77	77	0.549
78	78	0.143
79	79	0.133
8	8	0.533
80	80	0.293
81	81	0.275
82	82	0.114
83	83	0.701
84	84	0.689
85	85	0.0255
86	86	0.0702
87	87	0.339
88	88	0.551
89	89	0.365
9	9	0.297
90	90	0.0561
91	91	0.364
92	92	0.329
93	93	0.331
94	94	0.0307
95	95	0.089
96	96	0.509
97	97	0.936
98	98	0.14
99	99	0.0158

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13224

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011111 human CD14-positive CD16-negative Monocytes sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011111 (human CD14-positive CD16-negative Monocytes sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005516
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008165;DRR009037;DRZ000462;DRZ001847;DRZ011812;DRZ013197
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011111
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.70!497.50!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.56!363.05!PLEK;;chr12:54778471..54778528,-!p1@ZNF385A!2.25!176.13!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.15!140.64!IRF8;;chr14:75745523..75745537,+!p1@FOS!1.98!10441.96!FOS;;chr7:115670804..115670825,-!p1@TFEC!1.97!91.44!TFEC;;chr12:54694758..54694805,-!p1@NFE2!1.91!95.25!NFE2;;chr7:50344289..50344323,+!p1@IKZF1!1.89!76.83!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!1.87!73.13!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.68!47.40!OLIG1;;chr11:47399947..47399961,-!p3@SPI1!1.64!42.68!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.60!214.66!NCOA4;;chr11:47399996..47400014,-!p4@SPI1!1.55!34.15!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.51!402.59!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.47!142.77!NR4A2;;chr2:70142232..70142251,+!p1@MXD1!1.46!151.19!MXD1;;chr7:128577972..128578047,+!p1@IRF5!1.45!42.12!IRF5;;chr20:39317868..39317884,-!p1@MAFB!1.44!301.94!MAFB;;chr5:88178983..88179012,-!p1@MEF2C!1.44!196.58!MEF2C;;chr11:47400032..47400043,-!p5@SPI1!1.41!24.71!SPI1;;chr6:144385698..144385742,-!p2@PLAGL1!1.40!29.43!PLAGL1;;chr19:45971246..45971265,+!p1@FOSB!1.35!380.91!FOSB;;chr12:54694807..54694832,-!p3@NFE2!1.35!21.23!NFE2;;chr7:149470641..149470694,-!p1@ZNF467!1.34!93.01!ZNF467;;chr19:13213662..13213686,-!p1@LYL1!1.34!30.78!LYL1;;chr11:47400045..47400060,-!p6@SPI1!1.34!21.12!SPI1;;chr12:72056800..72056834,+!p1@THAP2!1.33!27.07!THAP2;;chr21:34442540..34442560,+!p2@OLIG1!1.33!20.56!OLIG1;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.66!KDM5D;;chr19:12902289..12902307,+!p1@JUNB!1.31!4260.06!JUNB;;chr14:75746722..75746777,+!p2@FOS!1.31!24.94!FOS;;chr9:110250697..110250738,-!p2@KLF4!1.31!22.80!KLF4;;chr2:28618532..28618610,+!p4@FOSL2!1.29!31.56!FOSL2;;chr7:50343634..50343717,+!p2@IKZF1!1.29!18.31!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.25!16.85!PLEK;;chr9:110252035..110252057,-!p1@KLF4!1.23!250.27!KLF4;;chr19:33793430..33793447,-!p1@CEBPA!1.23!67.28!CEBPA;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.03!POU2F2;;chr10:35416142..35416169,+!p3@CREM!1.22!41.00!CREM;;chr5:176735063..176735088,-!p2@MXD3!1.22!15.73!MXD3;;chr11:128563948..128564003,+!p1@FLI1!1.20!175.01!FLI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.20!14.94!ZNF385A;;chr9:102584262..102584276,+!p1@NR4A3!1.18!31.68!NR4A3;;chr4:106068026..106068084,+!p1@TET2!1.17!122.33!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.17!87.84!ELF1;;chr2:157198916..157198978,-!p2@NR4A2!1.17!47.74!NR4A2;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.40!CEBPB;;chr12:52445218..52445237,+!p1@NR4A1!1.15!162.65!NR4A1;;chr9:117150254..117150271,-!p1@AKNA!1.14!34.82!AKNA;;chr20:48807430..48807439,+!p8@CEBPB!1.14!19.43!CEBPB;;chr7:28725715..28725727,+!p3@CREB5!1.13!14.60!CREB5;;chr17:38497662..38497713,+!p4@RARA!1.13!14.38!RARA;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!75.71!CSRNP1;;chr21:36421535..36421610,-!p2@RUNX1!1.12!43.92!RUNX1;;chr2:208031943..208031978,-!p5@KLF7!1.12!16.29!KLF7;;chr16:88752889..88752921,-!p1@SNAI3!1.12!14.27!SNAI3;;chr19:54041669..54041697,+!p2@ZNF331!1.11!11.91!ZNF331;;chr8:48650715..48650735,-!p1@CEBPD!1.10!1478.92!CEBPD;;chr10:94449703..94449718,+!p1@HHEX!1.10!45.16!HHEX;;chr10:51572339..51572376,+!p4@NCOA4!1.10!26.06!NCOA4;;chr9:102584241..102584261,+!p4@NR4A3!1.09!17.52!NR4A3;;chr12:54694653..54694672,-!p2@NFE2!1.08!11.01!NFE2;;chr2:61108695..61108753,+!p1@REL!1.07!74.36!REL;;chr5:88179017..88179046,-!p2@MEF2C!1.07!43.81!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!1.07!41.34!TSC22D3;;chr2:145277882..145277967,-!p3@ZEB2!1.07!18.65!ZEB2;;chr6:44233252..44233296,-!p1@NFKBIE!1.06!103.57!NFKBIE;;chr7:28725740..28725778,+!p1@CREB5!1.06!95.25!CREB5;;chr17:38498594..38498661,+!p2@RARA!1.05!34.37!RARA;;chr1:40367530..40367597,-!p1@MYCL1!1.05!18.65!MYCL1;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.86!PRDM1;;chr14:35872962..35873025,-!p3@NFKBIA!1.02!24.38!NFKBIA;;chr14:75988771..75988826,+!p1@BATF!1.01!12.47!BATF;;chr12:72056773..72056796,+!p3@THAP2!1.01!12.02!THAP2;;chr19:45251395..45251432,+!p8@BCL3!1.01!9.21!BCL3;;chr14:35873947..35873965,-!p1@NFKBIA!1.00!584.90!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.00!16.96!RUNX3;;chr6:15246261..15246312,+!p1@JARID2!0.99!217.24!JARID2;;chr8:48650697..48650708,-!p2@CEBPD!0.98!67.17!CEBPD;;chr7:149470540..149470596,-!p2@ZNF467!0.98!11.23!ZNF467;;chr6:391743..391759,+!p1@IRF4!0.98!8.65!IRF4;;chr3:101568349..101568365,+!p1@NFKBIZ!0.97!444.15!NFKBIZ;;chr1:156470515..156470542,-!p2@MEF2D!0.97!44.48!MEF2D;;chr20:56195474..56195506,-!p1@ZBP1!0.97!8.42!ZBP1;;chr7:137620684..137620711,-!p4@CREB3L2!0.97!8.42!CREB3L2;;chr19:54058073..54058088,+!p1@ZNF331!0.97!8.31!ZNF331;;chr14:75746340..75746368,+!p3@FOS!0.97!8.31!FOS;;chr7:150974206..150974255,-!p1@SMARCD3!0.96!51.78!SMARCD3;;chr6:15246200..15246214,+!p2@JARID2!0.96!22.80!JARID2;;chr19:36391434..36391450,-!p1@NFKBID!0.95!15.84!NFKBID;;chr4:185395633..185395651,-!p2@IRF2!0.95!12.92!IRF2;;chr16:3313791..3313834,+!p2@ZNF263!0.94!17.41!ZNF263;;chr16:31885093..31885165,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11788-124B6
 |is_a=EFO:0002091;;FF:0011111
 |is_obsolete=
+|library_id=CNhs13224
+|library_id_phase_based=2:CNhs13224
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11788
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11788
 |name=CD14+CD16- Monocytes, donor1
 |namespace=
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13224,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 58: / Line 79: @@
 |rna_weight_ug=2.8996
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=NFIL3:2.68422444297;SPIB:2.59691480335;SPI1:2.40845387962;CEBPA,B_DDIT3:2.32829965322;MAFB:2.28829319847;ETS1,2:2.18447159891;ATF5_CREB3:2.10386308795;PAX2:1.89878970228;RUNX1..3:1.83716487262;HIF1A:1.81829940877;NANOG{mouse}:1.75327691879;IRF1,2:1.74709548767;CREB1:1.6981258258;EP300:1.63787046123;DMAP1_NCOR{1,2}_SMARC:1.60235027352;FOXP3:1.57172316205;ATF4:1.55638987294;ELF1,2,4:1.55307455706;HLF:1.52166279593;IRF7:1.41162444678;SREBF1,2:1.39131322561;TLX2:1.32681185693;FOXN1:1.32417151968;ESRRA:1.29481440354;RXRA_VDR{dimer}:1.18931666475;NFE2L2:1.14233459531;HMX1:1.13693649816;TGIF1:1.13122280404;RFX2..5_RFXANK_RFXAP:1.080748349;NFKB1_REL_RELA:1.04764338582;FOSL2:0.913935578784;NFE2L1:0.882295541778;FOXO1,3,4:0.78767927867;JUN:0.761842099058;BACH2:0.681536813199;HMGA1,2:0.658611109941;NR6A1:0.603508812108;FOX{D1,D2}:0.582456079691;ATF2:0.579109837398;FOS_FOS{B,L1}_JUN{B,D}:0.573697820278;NFE2:0.558120098217;TAL1_TCF{3,4,12}:0.525574056934;GLI1..3:0.498473368289;HOXA9_MEIS1:0.466946738478;ATF6:0.448219152641;NR1H4:0.447742389225;HBP1_HMGB_SSRP1_UBTF:0.386389402101;STAT2,4,6:0.383349148307;FOXA2:0.294318239989;FOX{F1,F2,J1}:0.273913127715;BPTF:0.239278448403;NANOG:0.222177491131;NKX2-2,8:0.216164883868;NFIX:0.175123235207;FOX{I1,J2}:0.169486151971;PPARG:0.157353498099;ALX4:0.14541704259;ESR1:0.132293446999;OCT4_SOX2{dimer}:0.12325319367;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.113433934139;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0744616646474;CDX1,2,4:0.0636716133559;AHR_ARNT_ARNT2:0.00142435926047;MYB:-0.0044661733794;TFCP2:-0.0244517345522;TFAP4:-0.0464945726988;MEF2{A,B,C,D}:-0.0864242687243;ALX1:-0.0952385267232;XBP1:-0.103161268918;GATA4:-0.107859678699;PAX3,7:-0.144420510973;EN1,2:-0.151329146308;HNF4A_NR2F1,2:-0.170794894906;FOXP1:-0.192825492502;T:-0.216654375295;PITX1..3:-0.217507736818;HES1:-0.227914950575;RORA:-0.259796147197;STAT5{A,B}:-0.263408138174;FOXD3:-0.276225250335;ZNF148:-0.283665767354;STAT1,3:-0.350321861861;RXR{A,B,G}:-0.377276911921;FOXQ1:-0.378092980105;PAX8:-0.39034970469;GATA6:-0.390793150541;SOX2:-0.401244272572;VSX1,2:-0.416314047984;ZBTB16:-0.427191398499;EBF1:-0.439921177687;SRF:-0.443399670714;NR5A1,2:-0.446138623514;IKZF2:-0.453533162025;PAX5:-0.483833551135;ELK1,4_GABP{A,B1}:-0.491240160483;TFAP2{A,C}:-0.521158220716;MYFfamily:-0.522529487727;TOPORS:-0.523192831695;POU5F1:-0.530660236062;AIRE:-0.564373813204;PAX4:-0.572367757001;CUX2:-0.581312423462;NHLH1,2:-0.618377187788;MTF1:-0.627841591222;MYOD1:-0.633505346395;REST:-0.638938572897;CRX:-0.657598833957;PRRX1,2:-0.657631363645;NKX3-1:-0.663650937671;POU2F1..3:-0.668410590995;HNF1A:-0.670480683935;SP1:-0.672882807124;BREu{core}:-0.673967833748;PRDM1:-0.710584045141;SPZ1:-0.732170916085;RREB1:-0.752897848615;MZF1:-0.776799303285;GCM1,2:-0.777150399776;ZNF238:-0.786721152572;POU1F1:-0.809608659128;PATZ1:-0.819788012047;ZNF423:-0.828182951176;HOX{A5,B5}:-0.839255072289;NR3C1:-0.845727564232;FOXL1:-0.848304175816;RFX1:-0.852240887459;ZEB1:-0.854999227415;SMAD1..7,9:-0.871425612947;SOX{8,9,10}:-0.897376645237;NKX3-2:-0.918163071312;PAX1,9:-0.979815078752;YY1:-0.998913575977;SOX5:-0.999247044643;ARID5B:-0.999385582516;PBX1:-1.00126849138;NFATC1..3:-1.02034584681;ZFP161:-1.02267419969;MTE{core}:-1.02864299889;GZF1:-1.03539363415;MED-1{core}:-1.08439702657;PDX1:-1.09402656392;DBP:-1.10503950226;EGR1..3:-1.10646886662;NKX2-1,4:-1.11139801461;HSF1,2:-1.11994054352;AR:-1.12431853626;HOX{A6,A7,B6,B7}:-1.13409885799;NKX2-3_NKX2-5:-1.14840814992;NKX6-1,2:-1.15047537127;E2F1..5:-1.16104792779;KLF4:-1.16518715101;IKZF1:-1.20706656028;ADNP_IRX_SIX_ZHX:-1.21623002309;PAX6:-1.22341687914;TBX4,5:-1.24654466633;MAZ:-1.24802163015;GTF2I:-1.25245597572;ZIC1..3:-1.25612007534;TFAP2B:-1.26072310852;TBP:-1.26759571282;NFY{A,B,C}:-1.26913836371;HIC1:-1.27292237354;SNAI1..3:-1.27743070654;TLX1..3_NFIC{dimer}:-1.27762515181;TEF:-1.28874741489;ZBTB6:-1.29121715341;LMO2:-1.35142614672;NRF1:-1.35501389868;TP53:-1.37696836384;GTF2A1,2:-1.37857870673;LHX3,4:-1.38122566016;HAND1,2:-1.38391270624;RBPJ:-1.418483387;LEF1_TCF7_TCF7L1,2:-1.52278926838;TEAD1:-1.55778316139;EVI1:-1.59070076093;FOXM1:-1.59646727252;HOX{A4,D4}:-1.6003669906;GFI1B:-1.60196468777;UFEwm:-1.60374238644;ZNF143:-1.61236578486;XCPE1{core}:-1.63525959975;TFDP1:-1.71918479149;bHLH_family:-1.77095767329;MYBL2:-1.82105293811;ZNF384:-1.86947743137;GFI1:-1.89185267225;ONECUT1,2:-1.95612335079;CDC5L:-1.99792382966;SOX17:-2.03672259215;POU6F1:-2.13502984114;POU3F1..4:-2.45735864161
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11788-124B6;search_select_hide=table117:FF:11788-124B6
 }}

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FF:11788-124B6: Difference between revisions

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Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0