FF:11879-125C7: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with B-glucan, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13489
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-10
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004841

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13489		CAGE		DRX008136		DRR009008

Accession ID Hg19

Library id		BAM		CTSS
CNhs13489		DRZ000433		DRZ001818

Accession ID Hg38

Library id		BAM		CTSS
CNhs13489		DRZ011783		DRZ013168

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.422
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0562
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.485
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.493
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.15
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.212
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.773
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.261
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.422
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.349
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.386
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.426
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.107
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.773
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.261
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.261
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.309
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.15
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.137
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.54
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.771
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.485
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.784
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.627
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.485
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.897
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.494
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.15
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.556
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.773
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.349
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.302
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.705
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.731
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.261
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.742
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.228
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.15
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.54
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.15
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.349
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.15
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.924
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.15
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.261
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.15
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.15
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.15
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13489

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.07849e-6
MA0003.1	MA0003.1	0.46
MA0004.1	MA0004.1	0.14
MA0006.1	MA0006.1	0.856
MA0007.1	MA0007.1	0.775
MA0009.1	MA0009.1	0.246
MA0014.1	MA0014.1	0.911
MA0017.1	MA0017.1	0.0816
MA0018.2	MA0018.2	0.0315
MA0019.1	MA0019.1	0.709
MA0024.1	MA0024.1	0.00202
MA0025.1	MA0025.1	0.00953
MA0027.1	MA0027.1	0.881
MA0028.1	MA0028.1	0.0628
MA0029.1	MA0029.1	0.339
MA0030.1	MA0030.1	0.2
MA0031.1	MA0031.1	0.398
MA0035.2	MA0035.2	0.281
MA0038.1	MA0038.1	0.146
MA0039.2	MA0039.2	0.79
MA0040.1	MA0040.1	0.626
MA0041.1	MA0041.1	0.278
MA0042.1	MA0042.1	0.326
MA0043.1	MA0043.1	3.69393e-6
MA0046.1	MA0046.1	0.0109
MA0047.2	MA0047.2	0.61
MA0048.1	MA0048.1	0.814
MA0050.1	MA0050.1	2.75947e-4
MA0051.1	MA0051.1	0.13
MA0052.1	MA0052.1	0.00128
MA0055.1	MA0055.1	0.92
MA0057.1	MA0057.1	0.445
MA0058.1	MA0058.1	0.0275
MA0059.1	MA0059.1	0.116
MA0060.1	MA0060.1	2.5311e-9
MA0061.1	MA0061.1	8.04001e-8
MA0062.2	MA0062.2	0.763
MA0065.2	MA0065.2	0.0155
MA0066.1	MA0066.1	0.0666
MA0067.1	MA0067.1	2.61233e-6
MA0068.1	MA0068.1	0.157
MA0069.1	MA0069.1	0.736
MA0070.1	MA0070.1	0.0228
MA0071.1	MA0071.1	0.291
MA0072.1	MA0072.1	0.98
MA0073.1	MA0073.1	0.438
MA0074.1	MA0074.1	0.186
MA0076.1	MA0076.1	0.0611
MA0077.1	MA0077.1	0.221
MA0078.1	MA0078.1	0.557
MA0079.2	MA0079.2	0.328
MA0080.2	MA0080.2	6.38771e-14
MA0081.1	MA0081.1	4.06515e-4
MA0083.1	MA0083.1	0.711
MA0084.1	MA0084.1	0.408
MA0087.1	MA0087.1	0.718
MA0088.1	MA0088.1	0.333
MA0090.1	MA0090.1	0.222
MA0091.1	MA0091.1	0.489
MA0092.1	MA0092.1	0.337
MA0093.1	MA0093.1	0.146
MA0099.2	MA0099.2	9.54845e-44
MA0100.1	MA0100.1	0.47
MA0101.1	MA0101.1	3.93478e-7
MA0102.2	MA0102.2	5.49247e-7
MA0103.1	MA0103.1	0.342
MA0104.2	MA0104.2	0.262
MA0105.1	MA0105.1	3.2548e-11
MA0106.1	MA0106.1	0.979
MA0107.1	MA0107.1	1.26037e-8
MA0108.2	MA0108.2	0.341
MA0111.1	MA0111.1	0.501
MA0112.2	MA0112.2	6.33189e-5
MA0113.1	MA0113.1	0.978
MA0114.1	MA0114.1	0.189
MA0115.1	MA0115.1	0.606
MA0116.1	MA0116.1	5.02966e-4
MA0117.1	MA0117.1	0.0684
MA0119.1	MA0119.1	0.428
MA0122.1	MA0122.1	0.81
MA0124.1	MA0124.1	0.393
MA0125.1	MA0125.1	0.303
MA0131.1	MA0131.1	0.385
MA0135.1	MA0135.1	0.81
MA0136.1	MA0136.1	8.62818e-15
MA0137.2	MA0137.2	0.465
MA0138.2	MA0138.2	0.557
MA0139.1	MA0139.1	0.806
MA0140.1	MA0140.1	0.267
MA0141.1	MA0141.1	0.12
MA0142.1	MA0142.1	0.402
MA0143.1	MA0143.1	0.623
MA0144.1	MA0144.1	0.142
MA0145.1	MA0145.1	0.378
MA0146.1	MA0146.1	0.141
MA0147.1	MA0147.1	0.387
MA0148.1	MA0148.1	0.498
MA0149.1	MA0149.1	0.151
MA0150.1	MA0150.1	2.7555e-22
MA0152.1	MA0152.1	0.855
MA0153.1	MA0153.1	0.00485
MA0154.1	MA0154.1	0.00165
MA0155.1	MA0155.1	0.943
MA0156.1	MA0156.1	3.45434e-7
MA0157.1	MA0157.1	0.924
MA0159.1	MA0159.1	0.0196
MA0160.1	MA0160.1	0.0255
MA0162.1	MA0162.1	0.705
MA0163.1	MA0163.1	3.53616e-7
MA0164.1	MA0164.1	0.562
MA0258.1	MA0258.1	0.00506
MA0259.1	MA0259.1	0.759

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13489

Novel motif	Logo	P-value
1	1	0.101
10	10	0.0212
100	100	0.773
101	101	0.871
102	102	0.604
103	103	0.386
104	104	0.604
105	105	0.145
106	106	3.19758e-4
107	107	0.244
108	108	0.969
109	109	0.315
11	11	0.191
110	110	0.255
111	111	0.0358
112	112	0.319
113	113	0.421
114	114	0.0193
115	115	0.25
116	116	0.944
117	117	0.0667
118	118	0.193
119	119	0.106
12	12	0.352
120	120	0.682
121	121	0.474
122	122	0.644
123	123	0.0871
124	124	0.455
125	125	0.436
126	126	0.284
127	127	0.458
128	128	0.031
129	129	0.507
13	13	0.153
130	130	0.128
131	131	0.805
132	132	0.0547
133	133	0.704
134	134	0.726
135	135	0.759
136	136	0.984
137	137	0.0138
138	138	0.289
139	139	0.0337
14	14	0.511
140	140	0.159
141	141	0.346
142	142	0.2
143	143	0.0304
144	144	0.602
145	145	0.521
146	146	0.479
147	147	0.462
148	148	0.0112
149	149	0.81
15	15	0.159
150	150	0.465
151	151	0.384
152	152	0.122
153	153	0.416
154	154	0.495
155	155	0.671
156	156	0.577
157	157	0.293
158	158	0.0132
159	159	0.818
16	16	0.352
160	160	0.428
161	161	0.549
162	162	0.248
163	163	0.144
164	164	0.0971
165	165	0.23
166	166	0.466
167	167	0.142
168	168	0.365
169	169	0.0091
17	17	0.224
18	18	0.119
19	19	0.424
2	2	0.813
20	20	0.261
21	21	0.432
22	22	0.233
23	23	0.0473
24	24	0.342
25	25	0.413
26	26	0.054
27	27	0.718
28	28	0.434
29	29	0.359
3	3	0.139
30	30	0.495
31	31	0.779
32	32	0.721
33	33	0.475
34	34	0.583
35	35	0.163
36	36	0.161
37	37	0.0606
38	38	0.377
39	39	0.796
4	4	0.938
40	40	0.182
41	41	0.00974
42	42	0.428
43	43	0.0287
44	44	0.941
45	45	0.679
46	46	0.18
47	47	0.638
48	48	0.589
49	49	0.0994
5	5	0.314
50	50	0.945
51	51	0.463
52	52	0.33
53	53	0.383
54	54	0.39
55	55	0.553
56	56	0.685
57	57	0.77
58	58	0.144
59	59	0.188
6	6	0.657
60	60	0.0539
61	61	0.642
62	62	0.0732
63	63	0.534
64	64	0.414
65	65	0.217
66	66	0.301
67	67	0.56
68	68	0.827
69	69	0.831
7	7	0.294
70	70	0.0283
71	71	0.0335
72	72	0.287
73	73	0.109
74	74	0.227
75	75	0.12
76	76	0.163
77	77	0.507
78	78	0.0835
79	79	0.559
8	8	0.44
80	80	0.327
81	81	0.354
82	82	0.157
83	83	0.0245
84	84	0.205
85	85	0.011
86	86	0.0305
87	87	0.633
88	88	0.657
89	89	0.249
9	9	0.435
90	90	0.111
91	91	0.256
92	92	0.187
93	93	0.277
94	94	0.0556
95	95	0.457
96	96	0.361
97	97	0.799
98	98	0.126
99	99	0.0565

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13489

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011102 human CD14-positive monocytes - treated with B-glucan sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000630 (beta-glucan treatment sample)
0011102 (human CD14-positive monocytes - treated with B-glucan sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004841
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008136;DRR009008;DRZ000433;DRZ001818;DRZ011783;DRZ013168
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000630,FF:0011102
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.17!1464.58!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.79!610.17!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.56!364.29!OLIG1;;chr7:115670804..115670825,-!p1@TFEC!2.44!277.13!TFEC;;chr10:64576105..64576133,-!p1@EGR2!2.38!474.90!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!2.38!237.66!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.28!189.14!IRF8;;chr11:47399947..47399961,-!p3@SPI1!2.11!127.46!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.07!1277.91!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.07!115.54!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!1.96!243.00!PRDM1;;chr21:34398234..34398250,+!p1@OLIG2!1.96!90.87!OLIG2;;chr10:64018918..64018936,+!p2@ZNF365!1.89!76.48!ZNF365;;chr11:47399996..47400014,-!p4@SPI1!1.86!71.54!SPI1;;chr19:50432132..50432217,+!p2@ATF5!1.83!78.94!ATF5;;chr1:25256756..25256774,-!p1@RUNX3!1.81!115.95!RUNX3;;chr11:47400032..47400043,-!p5@SPI1!1.78!58.80!SPI1;;chr10:35484053..35484076,+!p1@CREM!1.76!136.51!CREM;;chr10:31288370..31288393,-!p3@ZNF438!1.76!57.15!ZNF438;;chr10:31288398..31288455,-!p2@ZNF438!1.75!64.55!ZNF438;;chr2:70142232..70142251,+!p1@MXD1!1.74!290.28!MXD1;;chr3:12329397..12329433,+!p2@PPARG!1.72!114.72!PPARG;;chr19:45971246..45971265,+!p1@FOSB!1.71!884.42!FOSB;;chr14:35872453..35872485,-!p2@NFKBIA!1.71!120.06!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!1.69!83.88!NR4A3;;chr12:52445218..52445237,+!p1@NR4A1!1.68!560.42!NR4A1;;chr2:157189180..157189290,-!p1@NR4A2!1.68!235.19!NR4A2;;chr12:72056800..72056834,+!p1@THAP2!1.68!62.09!THAP2;;chr2:145277640..145277771,-!p1@ZEB2!1.67!577.69!ZEB2;;chr2:68592394..68592405,+!p2@PLEK!1.67!45.64!PLEK;;chr6:106534230..106534254,+!p2@PRDM1!1.66!108.96!PRDM1;;chr1:212782094..212782109,+!p1@ATF3!1.60!995.85!ATF3;;chr16:31885093..31885165,+!p1@ZNF267!1.59!553.43!ZNF267;;chr2:145275162..145275202,-!p2@ZEB2!1.59!215.86!ZEB2;;chr14:35873947..35873965,-!p1@NFKBIA!1.57!2151.64!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.57!237.24!REL;;chr22:38597987..38598021,+!p2@MAFF!1.56!208.05!MAFF;;chr8:22550982..22550999,-!p1@EGR3!1.56!96.21!EGR3;;chr12:72056749..72056767,+!p6@THAP2!1.56!38.65!THAP2;;chr20:48599506..48599526,+!p1@SNAI1!1.55!213.40!SNAI1;;chr10:51572408..51572454,+!p3@NCOA4!1.55!192.02!NCOA4;;chr11:47400045..47400060,-!p6@SPI1!1.55!34.54!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.54!33.72!ZNF385A;;chr21:34442540..34442560,+!p2@OLIG1!1.54!33.72!OLIG1;;chr3:12330560..12330579,+!p1@PPARG!1.53!37.83!PPARG;;chr4:103422499..103422632,+!p1@NFKB1!1.51!627.44!NFKB1;;chr19:36391434..36391450,-!p1@NFKBID!1.50!58.39!NFKBID;;chr9:102584128..102584144,+!p3@NR4A3!1.49!56.33!NR4A3;;chr6:15246200..15246214,+!p2@JARID2!1.48!79.36!JARID2;;chr14:35872962..35873025,-!p3@NFKBIA!1.48!72.37!NFKBIA;;chr12:72056773..72056796,+!p3@THAP2!1.48!37.83!THAP2;;chr20:48807351..48807384,+!p1@CEBPB!1.47!2758.94!CEBPB;;chr7:128577972..128578047,+!p1@IRF5!1.47!43.99!IRF5;;chr6:144385698..144385742,-!p2@PLAGL1!1.47!34.54!PLAGL1;;chr6:44233252..44233296,-!p1@NFKBIE!1.45!254.92!NFKBIE;;chr10:104155480..104155534,+!p2@NFKB2!1.45!171.46!NFKB2;;chr9:102584262..102584276,+!p1@NR4A3!1.45!59.62!NR4A3;;chr21:30671690..30671762,+!p2@BACH1!1.44!87.99!BACH1;;chrX:153305787..153305807,-!p3@MECP2!1.44!26.73!MECP2;;chrX:129244454..129244488,-!p1@ELF4!1.42!176.39!ELF4;;chr10:51572339..51572376,+!p4@NCOA4!1.42!55.51!NCOA4;;chr21:30671235..30671253,+!p1@BACH1!1.40!296.45!BACH1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!23.85!ZNF331;;chr19:19496539..19496576,+!p8@GATAD2A!1.39!40.71!GATAD2A;;chr10:104154246..104154347,+!p3@NFKB2!1.36!129.93!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.36!21.79!IKZF1;;chr19:45251395..45251432,+!p8@BCL3!1.36!21.79!BCL3;;chr21:36260295..36260310,-!p3@RUNX1!1.34!33.30!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.33!126.64!ELF1;;chr19:33793430..33793447,-!p1@CEBPA!1.32!81.41!CEBPA;;chr19:54058073..54058088,+!p1@ZNF331!1.32!19.74!ZNF331;;chr9:129567282..129567353,+!p1@ZBTB43!1.31!244.64!ZBTB43;;chr2:97202480..97202499,+!p1@ARID5A!1.30!186.26!ARID5A;;chr12:48298765..48298783,-!p2@VDR!1.30!38.65!VDR;;chr6:12012170..12012245,+!p1@HIVEP1!1.28!89.63!HIVEP1;;chr10:104155659..104155676,+!p4@NFKB2!1.28!22.61!NFKB2;;chr4:106068026..106068084,+!p1@TET2!1.27!156.24!TET2;;chr18:3449720..3449749,+!p2@TGIF1!1.27!37.42!TGIF1;;chr11:47399920..47399931,-!p7@SPI1!1.27!17.68!SPI1;;chr11:65430554..65430579,-!p3@RELA!1.26!43.17!RELA;;chr1:221052776..221052799,+!p1@HLX!1.26!30.43!HLX;;chr8:80679993..80680011,-!p1@HEY1!1.26!24.67!HEY1;;chr20:48809000..48809053,+!p12@CEBPB!1.26!22.61!CEBPB;;chr17:38497662..38497713,+!p4@RARA!1.26!19.74!RARA;;chrX:129244430..129244442,-!p5@ELF4!1.26!17.27!ELF4;;chr6:106535598..106535637,+!p7@PRDM1!1.26!17.27!PRDM1;;chr1:38325227..38325246,-!p2@MTF1!1.25!23.03!MTF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.23!191.60!ZC3H12A;;chr6:12012249..12012266,+!p5@HIVEP1!1.23!27.96!HIVEP1;;chr5:142782823..142782854,-!p3@NR3C1!1.23!22.61!NR3C1;;chr7:17338266..17338282,+!p1@AHR!1.22!165.70!AHR;;chr12:11802753..11802834,+!p2@ETV6!1.22!75.24!ETV6;;chr2:70314240..70314256,+!p4@PCBP1!1.22!31.66!PCBP1;;chr6:391743..391759,+!p1@IRF4!1.22!15.62!IRF4;;chr8:53373491..53373506,-!p4@ST18!1.22!15.62!ST18;;chr1:157108130..157108173,-!p1@ETV3!1.21!108.14!ETV3;;chr21:36421535..36421610,-!p2@RUNX1!1.21!53.45!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.21!38.24!BCL3;;chr8:72756637..72756664,-!p3@MSC!1.21!17.27!MSC;;chr2:238600933..238600985,+!p3@LRRFIP1!1.20!78.94!LRRFIP1;;chr19:45252008..45252024,+!p2@BCL3!1.20!48.52!BCL3;;chr8:72756063..72756125,-!p1@MSC!1.20!29.60!MSC;;chr20:48807456..48807475,+!p3@CEBPB!1.20!28.37!CEBPB;;chr19:50432104..50432126,+!p6@ATF5!1.20!14.80!ATF5;;chr1:25256439..25256476,-!p3@RUNX3!1.20!14.80!RUNX3;;chr20:48807648..48807671,+!p9@CEBPB!1.19!20.97!CEBPB;;chr14:35872926..35872951,-!p4@NFKBIA!1.18!19.74!NFKBIA;;chr1:221052733..221052749,+!p2@HLX!1.18!18.50!HLX;;chr10:31288329..31288353,-!p7@ZNF438!1.18!13.98!ZNF438;;chr10:35484090..35484104,+!p6@CREM!1.18!13.98!CREM;;chr7:17338324..17338341,+!p3@AHR!1.17!46.05!AHR;;chr2:192015701..192015743,-!p1@STAT4!1.17!18.91!STAT4;;chr2:28615716..28615733,+!p1@FOSL2!1.16!634.84!FOSL2;;chr3:170075436..170075520,+!p1@SKIL!1.16!289.05!SKIL;;chr12:96588219..96588263,+!p2@ELK3!1.16!97.04!ELK3;;chr2:145277882..145277967,-!p3@ZEB2!1.16!23.44!ZEB2;;chr2:113999360..113999386,-!p4@PAX8!1.16!13.57!PAX8;;chr18:77155922..77155939,+!p1@NFATC1!1.15!35.77!NFATC1;;chr10:3827371..3827386,-!p2@KLF6!1.14!107.31!KLF6;;chr6:12011943..12012015,+!p2@HIVEP1!1.14!41.53!HIVEP1;;chr14:64970670..64970712,-!p3@ZBTB25!1.14!27.96!ZBTB25;;chr6:15246217..15246228,+!p3@JARID2!1.14!22.61!JARID2;;chr2:61108808..61108821,+!p3@REL!1.14!16.04!REL;;chr14:64971014..64971044,+!p4@ZBTB1!1.12!20.15!ZBTB1;;chr18:3449586..3449617,+!p8@TGIF1!1.12!19.32!TGIF1;;chr18:3449618..3449634,+!p13@TGIF1!1.12!15.21!TGIF1;;chr21:30672433..30672464,+!p6@BACH1!1.12!12.34!BACH1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.12!12.34!LRRFIP1;;chr9:110252035..110252057,-!p1@KLF4!1.11!189.55!KLF4;;chr19:19496624..19496660,+!p3@GATAD2A!1.11!54.69!GATAD2A;;chr10:104155455..104155479,+!p1@NFKB2!1.10!168.99!NFKB2;;chr12:48298785..48298828,-!p1@VDR!1.10!61.26!VDR;;chr9:102584241..102584261,+!p4@NR4A3!1.10!18.09!NR4A3;;chr2:61108771..61108789,+!p4@REL!1.10!17.68!REL;;chr2:102091566..102091581,-!p1@RFX8!1.10!11.51!RFX8;;chr2:231090471..231090504,+!p2@SP140!1.10!11.51!SP140;;chr13:41593392..41593403,-!p7@ELF1!1.10!11.51!ELF1;;chr11:615942..615957,-!p1@IRF7!1.09!106.08!IRF7;;chr1:156470515..156470542,-!p2@MEF2D!1.09!60.03!MEF2D;;chr20:48807615..48807644,+!p6@CEBPB!1.09!18.91!CEBPB;;chr6:15246261..15246312,+!p1@JARID2!1.08!267.67!JARID2;;chr3:69788576..69788648,+!p1@MITF!1.08!59.62!MITF;;chr20:48807171..48807234,+!p4@CEBPB!1.08!24.26!CEBPB;;chr2:68615063..68615089,+!p4@PLEK!1.08!11.10!PLEK;;chr3:126191157..126191171,-!p4@ZXDC!1.08!11.10!ZXDC;;chr2:28618532..28618610,+!p4@FOSL2!1.07!18.50!FOSL2;;chr12:96588279..96588299,+!p4@ELK3!1.06!50.16!ELK3;;chr17:79885537..79885554,-!p2@MAFG!1.06!20.56!MAFG;;chr18:3448455..3448480,+!p5@TGIF1!1.06!19.32!TGIF1;;chr7:149470641..149470694,-!p1@ZNF467!1.05!46.87!ZNF467;;chr17:79881332..79881348,-!p3@MAFG!1.05!15.21!MAFG;;chr5:71803177..71803255,-!p1@ZNF366!1.05!10.28!ZNF366;;chr7:115670792..115670797,-!p2@TFEC!1.05!10.28!TFEC;;chr3:101568349..101568365,+!p1@NFKBIZ!1.04!518.89!NFKBIZ;;chr21:36260980..36261011,-!p1@RUNX1!1.04!293.16!RUNX1;;chr17:38474489..38474548,+!p1@RARA!1.03!313.31!RARA;;chr3:12329358..12329393,+!p3@PPARG!1.03!24.26!PPARG;;chr18:3449527..3449582,+!p6@TGIF1!1.03!18.91!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!1.03!15.21!TGIF1;;chr1:156470494..156470505,-!p3@MEF2D!1.03!14.39!MEF2D;;chr3:39195037..39195069,-!p2@CSRNP1!1.02!60.44!CSRNP1;;chr6:20403916..20403965,+!p3@E2F3!1.02!43.58!E2F3;;chr2:208394817..208394834,+!p3@CREB1!1.02!38.65!CREB1;;chr12:96588368..96588394,+!p3@ELK3!1.02!25.90!ELK3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.02!13.57!NFKBIZ;;chr14:35872494..35872511,-!p5@NFKBIA!1.02!12.75!NFKBIA;;chr2:145277589..145277612,-!p12@ZEB2!1.02!9.46!ZEB2;;chr3:12329464..12329472,+!p6@PPARG!1.02!9.46!PPARG;;chr19:36389839..36389857,-!p4@NFKBID!1.02!9.46!NFKBID;;chr6:106535687..106535706,+!p8@PRDM1!1.02!9.46!PRDM1;;chr21:40177845..40177863,+!p1@ETS2!1.01!550.14!ETS2;;chr2:157198916..157198978,-!p2@NR4A2!1.01!32.89!NR4A2;;chr10:35416142..35416169,+!p3@CREM!1.01!25.08!CREM;;chr20:48807430..48807439,+!p8@CEBPB!1.01!13.98!CEBPB;;chr19:42636586..42636607,-!p1@POU2F2!1.00!25.49!POU2F2;;chr9:110250697..110250738,-!p2@KLF4!1.00!10.69!KLF4;;chr8:72755203..72755239,-!p10@MSC!1.00!9.05!MSC;;chr1:25291620..25291635,-!p4@RUNX3!1.00!9.05!RUNX3;;chrX:153305962..153305995,-!p5@MECP2!1.00!9.05!MECP2;;chr19:45504688..45504782,+!p1@RELB!0.99!55.10!RELB;;chr10:35484804..35484902,+!p2@CREM!0.99!34.54!CREM;;chr8:123793988..123794016,+!p1@ZHX2!0.99!15.62!ZHX2;;chr3:150126101..150126118,+!p6@TSC22D2!0.99!14.39!TSC22D2;;chr3:5021113..5021180,+!p1@BHLHE40!0.98!611.00!BHLHE40;;chr1:935467..935484,-!p1@HES4!0.98!38.65!HES4;;chr4:103423079..10342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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000630,FF:0011102,FF:11879-125C7
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor2.CNhs13489.11879-125C7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor2.CNhs13489.11879-125C7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor2.CNhs13489.11879-125C7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor2.CNhs13489.11879-125C7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor2.CNhs13489.11879-125C7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11879-125C7
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011102
+|is_a=EFO:0002091;;FF:0011102
+|is_obsolete=
+|library_id=CNhs13489
+|library_id_phase_based=2:CNhs13489
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11879
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11879
 |name=CD14+ monocytes - treated with B-glucan, donor2
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13489,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=3.288015
 |sample_age=51
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=NFE2:3.95286249579;SREBF1,2:3.83448302003;NFE2L2:3.78980147112;FOSL2:3.55196189912;BACH2:3.39890520715;PAX2:3.36841430663;CEBPA,B_DDIT3:3.05577737735;FOS_FOS{B,L1}_JUN{B,D}:2.9852034978;HLF:2.77326054733;SPIB:2.54611411988;SPI1:2.5458834239;ATF5_CREB3:2.40722778889;ATF4:2.28507741119;EP300:2.2809175944;NFE2L1:2.254936677;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.22957962368;CREB1:2.20599570433;NFKB1_REL_RELA:2.18379411337;FOXP3:2.16744372319;NANOG{mouse}:2.14991503339;ETS1,2:2.10812048112;ATF6:1.98445812595;FOXN1:1.98043602446;DMAP1_NCOR{1,2}_SMARC:1.77917249547;JUN:1.65950717829;RUNX1..3:1.49412931276;NR1H4:1.47650532311;NFIL3:1.37608496235;HES1:1.35854628799;MAFB:1.30091154883;PAX3,7:1.27606220393;STAT2,4,6:1.18950263271;HSF1,2:1.13457483934;BPTF:1.13261310601;ELF1,2,4:1.00551910219;ATF2:1.0042662376;IRF1,2:1.00045869026;HMX1:0.973765387675;RXRA_VDR{dimer}:0.970053520596;TGIF1:0.927504522713;GLI1..3:0.92284246524;SMAD1..7,9:0.868264757968;PDX1:0.852814734699;FOXD3:0.766739753369;ZBTB16:0.76031389023;IRF7:0.755842471526;ESR1:0.738054758971;NANOG:0.736907423904;TLX2:0.621851602655;HIF1A:0.619530783544;PITX1..3:0.586494797302;TFCP2:0.558938696106;ESRRA:0.519267347442;NFATC1..3:0.513604224728;ALX1:0.503756204117;PAX8:0.379304336009;TBP:0.377784312491;HMGA1,2:0.359449674338;PPARG:0.336533961714;HBP1_HMGB_SSRP1_UBTF:0.302485401199;FOXO1,3,4:0.281863524867;FOXP1:0.246322996408;AHR_ARNT_ARNT2:0.182322447059;EGR1..3:0.148239458934;ALX4:0.140208107989;XBP1:0.110037141494;IKZF2:0.0559135483181;HOX{A5,B5}:0.0470045882197;FOX{F1,F2,J1}:0.0237956296191;MEF2{A,B,C,D}:0.0222549399541;SRF:-0.0169035194609;PRDM1:-0.0292350586324;NR6A1:-0.0299772865649;FOX{D1,D2}:-0.0395131493732;CDX1,2,4:-0.0953543840427;STAT5{A,B}:-0.122304247117;OCT4_SOX2{dimer}:-0.12298074693;MYB:-0.22225463839;GATA4:-0.242942709197;EN1,2:-0.305587989711;FOXL1:-0.316422588316;RFX2..5_RFXANK_RFXAP:-0.32423331176;POU2F1..3:-0.371800839248;MZF1:-0.413089620874;NKX6-1,2:-0.416253009534;STAT1,3:-0.515945146605;PAX1,9:-0.5249461371;SPZ1:-0.534914357381;HOXA9_MEIS1:-0.56020213408;HNF4A_NR2F1,2:-0.597962266275;T:-0.599942450375;RREB1:-0.603678483664;FOXM1:-0.608299008959;RBPJ:-0.629202931174;MYFfamily:-0.66836797284;PAX4:-0.668434338753;VSX1,2:-0.689390523949;PATZ1:-0.696257077234;POU5F1:-0.702390815945;IKZF1:-0.70699618837;SOX2:-0.740049773083;REST:-0.746191146136;NKX3-1:-0.746531738891;RXR{A,B,G}:-0.758020111142;NHLH1,2:-0.808218642182;TFAP4:-0.810366786624;TBX4,5:-0.841024385336;ZNF238:-0.846411013433;ZNF148:-0.867551135146;HNF1A:-0.918342059361;MED-1{core}:-0.924805678073;RORA:-0.93557611074;PRRX1,2:-0.976063517734;GATA6:-0.976866307398;ZFP161:-0.986382379487;GZF1:-1.00423936282;CUX2:-1.01207460753;DBP:-1.0320080845;PAX6:-1.04165994633;MTF1:-1.06325529426;TFAP2B:-1.06376025277;POU6F1:-1.06961438608;ZBTB6:-1.07380658462;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.09939956554;ZIC1..3:-1.10197819246;MTE{core}:-1.10379828832;NFIX:-1.12220078537;TAL1_TCF{3,4,12}:-1.18511406268;TFAP2{A,C}:-1.20786332909;TOPORS:-1.2190436858;MYOD1:-1.23619465262;NKX2-2,8:-1.2377275054;GCM1,2:-1.24866539484;SP1:-1.26761402586;TFDP1:-1.26866334246;HOX{A6,A7,B6,B7}:-1.31261780455;GTF2A1,2:-1.33645720746;SOX5:-1.35649525741;GTF2I:-1.39111273969;ZNF384:-1.39173425771;SOX{8,9,10}:-1.4372030586;TEAD1:-1.43739169926;UFEwm:-1.45700214999;CRX:-1.45771927999;TLX1..3_NFIC{dimer}:-1.48242795941;ZEB1:-1.5124528782;AIRE:-1.52632755249;HIC1:-1.52878549071;XCPE1{core}:-1.53714952252;ONECUT1,2:-1.54021981981;TP53:-1.54495423059;KLF4:-1.55204100009;RFX1:-1.56204520661;MAZ:-1.56939275571;NKX2-3_NKX2-5:-1.58854656815;MYBL2:-1.58858421317;E2F1..5:-1.58960830704;POU3F1..4:-1.60534745656;BREu{core}:-1.60866170209;ELK1,4_GABP{A,B1}:-1.61783192417;NKX3-2:-1.67981662167;bHLH_family:-1.68207648659;FOXA2:-1.69716120616;NKX2-1,4:-1.69936844659;HOX{A4,D4}:-1.70690858069;NR3C1:-1.713415496;ADNP_IRX_SIX_ZHX:-1.71934171367;TEF:-1.75132120753;LMO2:-1.84796977945;SNAI1..3:-1.86346945346;EVI1:-1.9277762901;EBF1:-1.94361868912;AR:-1.94833456877;POU1F1:-1.95557636567;NR5A1,2:-1.99187063934;FOXQ1:-2.07182291755;PAX5:-2.10432755218;ZNF423:-2.14389694987;SOX17:-2.16834235258;ARID5B:-2.22720475319;NFY{A,B,C}:-2.23416633845;CDC5L:-2.28877504094;GFI1B:-2.33136843416;LHX3,4:-2.4752814735;YY1:-2.52766478961;FOX{I1,J2}:-2.53290572369;NRF1:-2.62892705689;PBX1:-2.76898064878;GFI1:-2.81556569166;HAND1,2:-2.89011028645;ZNF143:-3.12946887939;LEF1_TCF7_TCF7L1,2:-3.37374023792
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11879-125C7;search_select_hide=table117:FF:11879-125C7
 }}

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FF:11879-125C7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0