FF:11907-125F8: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	CD4+CD25+CD45RA+ naive regulatory T cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13513
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	35-36
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005314

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13513		CAGE		DRX008180		DRR009052

Accession ID Hg19

Library id		BAM		CTSS
CNhs13513		DRZ000477		DRZ001862

Accession ID Hg38

Library id		BAM		CTSS
CNhs13513		DRZ011827		DRZ013212

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.47
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.333
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.47
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.744
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.417
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.835
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.15
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.485
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.47
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.819
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.835
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.141
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.433
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.47
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.866
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.865
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.944
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.69
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.607
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.835
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.944
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13513

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.40416e-6
MA0003.1	MA0003.1	0.995
MA0004.1	MA0004.1	0.65
MA0006.1	MA0006.1	0.109
MA0007.1	MA0007.1	0.368
MA0009.1	MA0009.1	0.422
MA0014.1	MA0014.1	0.693
MA0017.1	MA0017.1	0.354
MA0018.2	MA0018.2	1.00655e-4
MA0019.1	MA0019.1	0.721
MA0024.1	MA0024.1	0.13
MA0025.1	MA0025.1	0.592
MA0027.1	MA0027.1	0.883
MA0028.1	MA0028.1	0.0128
MA0029.1	MA0029.1	0.71
MA0030.1	MA0030.1	0.0615
MA0031.1	MA0031.1	0.00528
MA0035.2	MA0035.2	0.129
MA0038.1	MA0038.1	0.0147
MA0039.2	MA0039.2	0.465
MA0040.1	MA0040.1	0.378
MA0041.1	MA0041.1	0.281
MA0042.1	MA0042.1	0.926
MA0043.1	MA0043.1	0.153
MA0046.1	MA0046.1	0.197
MA0047.2	MA0047.2	0.125
MA0048.1	MA0048.1	0.665
MA0050.1	MA0050.1	0.0397
MA0051.1	MA0051.1	0.54
MA0052.1	MA0052.1	0.0632
MA0055.1	MA0055.1	0.879
MA0057.1	MA0057.1	0.671
MA0058.1	MA0058.1	0.831
MA0059.1	MA0059.1	0.235
MA0060.1	MA0060.1	0.0109
MA0061.1	MA0061.1	0.0654
MA0062.2	MA0062.2	1.72228e-8
MA0065.2	MA0065.2	0.0562
MA0066.1	MA0066.1	0.278
MA0067.1	MA0067.1	0.166
MA0068.1	MA0068.1	0.947
MA0069.1	MA0069.1	0.818
MA0070.1	MA0070.1	0.453
MA0071.1	MA0071.1	0.501
MA0072.1	MA0072.1	0.46
MA0073.1	MA0073.1	0.901
MA0074.1	MA0074.1	0.684
MA0076.1	MA0076.1	0.00147
MA0077.1	MA0077.1	0.0889
MA0078.1	MA0078.1	0.409
MA0079.2	MA0079.2	0.177
MA0080.2	MA0080.2	6.72245e-9
MA0081.1	MA0081.1	0.0579
MA0083.1	MA0083.1	0.0996
MA0084.1	MA0084.1	0.474
MA0087.1	MA0087.1	0.586
MA0088.1	MA0088.1	0.422
MA0090.1	MA0090.1	0.00201
MA0091.1	MA0091.1	0.573
MA0092.1	MA0092.1	0.818
MA0093.1	MA0093.1	0.855
MA0099.2	MA0099.2	8.19853e-4
MA0100.1	MA0100.1	0.895
MA0101.1	MA0101.1	0.679
MA0102.2	MA0102.2	0.115
MA0103.1	MA0103.1	0.0419
MA0104.2	MA0104.2	0.062
MA0105.1	MA0105.1	2.36804e-5
MA0106.1	MA0106.1	0.465
MA0107.1	MA0107.1	0.53
MA0108.2	MA0108.2	7.44945e-11
MA0111.1	MA0111.1	0.198
MA0112.2	MA0112.2	0.0887
MA0113.1	MA0113.1	0.955
MA0114.1	MA0114.1	0.375
MA0115.1	MA0115.1	0.82
MA0116.1	MA0116.1	2.9175e-4
MA0117.1	MA0117.1	0.183
MA0119.1	MA0119.1	0.85
MA0122.1	MA0122.1	0.752
MA0124.1	MA0124.1	0.0775
MA0125.1	MA0125.1	0.045
MA0131.1	MA0131.1	0.445
MA0135.1	MA0135.1	0.0689
MA0136.1	MA0136.1	1.27968e-15
MA0137.2	MA0137.2	0.225
MA0138.2	MA0138.2	0.939
MA0139.1	MA0139.1	0.0813
MA0140.1	MA0140.1	0.128
MA0141.1	MA0141.1	0.816
MA0142.1	MA0142.1	0.671
MA0143.1	MA0143.1	0.627
MA0144.1	MA0144.1	0.323
MA0145.1	MA0145.1	0.339
MA0146.1	MA0146.1	0.593
MA0147.1	MA0147.1	0.0461
MA0148.1	MA0148.1	0.171
MA0149.1	MA0149.1	0.0851
MA0150.1	MA0150.1	0.53
MA0152.1	MA0152.1	0.0149
MA0153.1	MA0153.1	0.362
MA0154.1	MA0154.1	0.0356
MA0155.1	MA0155.1	0.641
MA0156.1	MA0156.1	2.03605e-12
MA0157.1	MA0157.1	5.68604e-4
MA0159.1	MA0159.1	0.163
MA0160.1	MA0160.1	0.655
MA0162.1	MA0162.1	0.919
MA0163.1	MA0163.1	9.90991e-10
MA0164.1	MA0164.1	0.919
MA0258.1	MA0258.1	0.06
MA0259.1	MA0259.1	0.121

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13513

Novel motif	Logo	P-value
1	1	0.121
10	10	0.0094
100	100	0.407
101	101	0.218
102	102	0.924
103	103	0.462
104	104	0.963
105	105	0.242
106	106	0.53
107	107	0.107
108	108	0.9
109	109	0.174
11	11	0.1
110	110	0.524
111	111	0.255
112	112	0.553
113	113	0.415
114	114	0.219
115	115	0.288
116	116	0.861
117	117	0.00367
118	118	0.22
119	119	0.83
12	12	0.701
120	120	0.953
121	121	0.775
122	122	0.781
123	123	6.07284e-5
124	124	0.275
125	125	0.703
126	126	0.885
127	127	0.904
128	128	0.514
129	129	0.645
13	13	0.464
130	130	0.182
131	131	0.934
132	132	0.636
133	133	0.546
134	134	0.959
135	135	0.914
136	136	0.512
137	137	0.124
138	138	0.174
139	139	0.0153
14	14	0.557
140	140	0.0455
141	141	0.306
142	142	0.928
143	143	0.00646
144	144	0.789
145	145	0.466
146	146	0.355
147	147	0.176
148	148	0.16
149	149	0.956
15	15	0.146
150	150	0.917
151	151	0.429
152	152	0.353
153	153	0.28
154	154	0.584
155	155	0.0158
156	156	0.715
157	157	0.335
158	158	0.0309
159	159	0.1
16	16	0.918
160	160	0.847
161	161	0.603
162	162	0.246
163	163	0.258
164	164	0.0879
165	165	0.922
166	166	0.476
167	167	0.054
168	168	0.784
169	169	0.822
17	17	0.992
18	18	0.741
19	19	0.445
2	2	0.673
20	20	0.612
21	21	0.527
22	22	0.745
23	23	0.841
24	24	0.912
25	25	0.0924
26	26	0.397
27	27	0.429
28	28	0.852
29	29	0.0295
3	3	0.0957
30	30	0.184
31	31	0.963
32	32	0.245
33	33	0.147
34	34	0.429
35	35	0.0491
36	36	0.0138
37	37	0.222
38	38	0.77
39	39	0.483
4	4	0.732
40	40	0.447
41	41	0.113
42	42	0.0859
43	43	0.241
44	44	0.799
45	45	0.406
46	46	0.151
47	47	0.106
48	48	0.324
49	49	0.0546
5	5	0.255
50	50	0.499
51	51	0.491
52	52	0.366
53	53	0.523
54	54	0.778
55	55	0.298
56	56	0.794
57	57	0.338
58	58	0.0391
59	59	0.659
6	6	0.817
60	60	0.413
61	61	0.125
62	62	0.0335
63	63	0.675
64	64	0.261
65	65	0.68
66	66	0.837
67	67	0.535
68	68	0.742
69	69	0.979
7	7	0.235
70	70	0.00745
71	71	0.0311
72	72	0.126
73	73	0.782
74	74	0.937
75	75	0.0231
76	76	0.126
77	77	0.242
78	78	0.233
79	79	0.777
8	8	0.597
80	80	0.0231
81	81	0.173
82	82	0.137
83	83	0.933
84	84	0.449
85	85	0.762
86	86	0.288
87	87	0.634
88	88	0.716
89	89	0.4
9	9	0.945
90	90	0.0184
91	91	0.235
92	92	0.261
93	93	0.501
94	94	0.111
95	95	0.231
96	96	0.364
97	97	0.342
98	98	0.0377
99	99	0.00175

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13513

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005314
-|accession_numbers=CAGE;DRX008180;DRR009052;DRZ000477;DRZ001862
+|accession_numbers=CAGE;DRX008180;DRR009052;DRZ000477;DRZ001862;DRZ011827;DRZ013212
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.16!142.22!FOXP3;;chr4:109087445..109087463,-!p1@LEF1!2.05!111.05!LEF1;;chr3:71355163..71355209,-!p5@FOXP1!2.04!150.02!FOXP1;;chr5:133451294..133451310,+!p2@TCF7!1.98!95.47!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.95!87.67!IKZF1;;chr4:109089901..109089930,-!p3@LEF1!1.88!74.03!LEF1;;chr19:54058073..54058088,+!p1@ZNF331!1.83!66.24!ZNF331;;chr3:63953435..63953499,+!p1@ATXN7!1.79!60.40!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.77!253.27!TCF7;;chr6:91006518..91006570,-!p1@BACH2!1.71!111.05!BACH2;;chr19:54041669..54041697,+!p2@ZNF331!1.71!50.65!ZNF331;;chr19:19779619..19779670,+!p1@ZNF101!1.68!128.59!ZNF101;;chr3:71542615..71542644,-!p12@FOXP1!1.66!44.81!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.66!44.81!LEF1;;chr3:18486354..18486377,-!p2@SATB1!1.64!52.60!SATB1;;chrX:106960285..106960299,-!p1@TSC22D3!1.63!1046.22!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.60!38.97!KDM5D;;chr2:97202991..97203043,+!p3@ARID5A!1.58!37.02!ARID5A;;chr19:16435625..16435682,+!p1@KLF2!1.55!1050.12!KLF2;;chr9:3525727..3525828,-!p2@RFX3!1.55!85.72!RFX3;;chr17:38497662..38497713,+!p4@RARA!1.52!37.02!RARA;;chr2:100759010..100759035,-!p1@AFF3!1.51!31.17!AFF3;;chr7:50343895..50343936,+!p5@IKZF1!1.51!31.17!IKZF1;;chr19:45972701..45972774,+!p2@FOSB!1.47!38.97!FOSB;;chr10:35416142..35416169,+!p3@CREM!1.45!70.14!CREM;;chr2:100759037..100759058,-!p2@AFF3!1.45!27.28!AFF3;;chr14:99738138..99738163,-!p1@BCL11B!1.45!27.28!BCL11B;;chr2:157189180..157189290,-!p1@NR4A2!1.43!130.53!NR4A2;;chr14:64971288..64971316,-!p2@ZBTB25!1.40!72.09!ZBTB25;;chr1:25256756..25256774,-!p1@RUNX3!1.40!44.81!RUNX3;;chr9:117150254..117150271,-!p1@AKNA!1.39!62.34!AKNA;;chr2:192015750..192015793,-!p2@STAT4!1.39!31.17!STAT4;;chr2:231090433..231090469,+!p1@SP140!1.39!23.38!SP140;;chr3:18480217..18480239,-!p3@SATB1!1.39!23.38!SATB1;;chr4:109088130..109088163,-!p13@LEF1!1.39!23.38!LEF1;;chr6:391743..391759,+!p1@IRF4!1.39!23.38!IRF4;;chr15:60884706..60884743,-!p1@RORA!1.36!111.05!RORA;;chr3:71542747..71542766,-!p34@FOXP1!1.35!21.43!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!1.35!21.43!LEF1;;chr10:8096631..8096660,+!p1@GATA3!1.31!23.38!GATA3;;chr3:71353892..71353928,-!p31@FOXP1!1.31!19.48!FOXP1;;chr3:71542684..71542720,-!p18@FOXP1!1.31!19.48!FOXP1;;chr4:109088089..109088101,-!p11@LEF1!1.31!19.48!LEF1;;chr17:37934365..37934387,-!p2@IKZF3!1.31!19.48!IKZF3;;chr13:41240717..41240735,-!p2@FOXO1!1.30!126.64!FOXO1;;chr6:91006575..91006602,-!p2@BACH2!1.29!27.28!BACH2;;chr14:64970670..64970712,-!p3@ZBTB25!1.28!38.97!ZBTB25;;chr5:133451347..133451358,+!p3@TCF7!1.27!17.53!TCF7;;chr2:157189617..157189667,-!p4@NR4A2!1.27!17.53!NR4A2;;chr2:231090471..231090504,+!p2@SP140!1.27!17.53!SP140;;chr19:54041645..54041661,+!p5@ZNF331!1.27!17.53!ZNF331;;chr1:45805693..45805718,+!p3@TOE1!1.26!37.02!TOE1;;chr19:12444440..12444455,-!p1@ZNF563!1.26!29.22!ZNF563;;chr8:81397846..81397860,+!p3@ZBTB10!1.26!21.43!ZBTB10;;chr9:114287433..114287513,+!p1@ZNF483!1.25!42.86!ZNF483;;chrX:101186981..101187030,-!p1@ZMAT1!1.24!52.60!ZMAT1;;chr18:3449330..3449344,+!p10@TGIF1!1.24!21.43!TGIF1;;chr19:45971246..45971265,+!p1@FOSB!1.22!284.45!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.22!54.55!RUNX1;;chr19:19729477..19729542,-!p1@PBX4!1.22!33.12!PBX4;;chr6:91006503..91006517,-!p3@BACH2!1.22!15.59!BACH2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.21!83.78!ZNF10;;chr16:3313791..3313834,+!p2@ZNF263!1.20!33.12!ZNF263;;chr2:97202480..97202499,+!p1@ARID5A!1.19!146.12!ARID5A;;chr11:128392085..128392232,-!p1@ETS1!1.17!455.89!ETS1;;chr4:38665769..38665801,+!p2@KLF3!1.17!122.74!KLF3;;chr2:214015343..214015366,-!p3@IKZF2!1.17!13.64!IKZF2;;chr2:214017168..214017189,-!p8@IKZF2!1.17!13.64!IKZF2;;chr3:71542651..71542683,-!p22@FOXP1!1.17!13.64!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.17!13.64!IKZF1;;chr9:20620829..20620848,-!p7@MLLT3!1.17!13.64!MLLT3;;chr19:12902289..12902307,+!p1@JUNB!1.16!3010.07!JUNB;;chr8:123793988..123794016,+!p1@ZHX2!1.15!23.38!ZHX2;;chr8:81397876..81397898,+!p5@ZBTB10!1.15!15.59!ZBTB10;;chr7:21467642..21467671,+!p2@SP4!1.14!29.22!SP4;;chr2:192015701..192015743,-!p1@STAT4!1.14!17.53!STAT4;;chr11:128392273..128392308,-!p2@ETS1!1.13!52.60!ETS1;;chr8:81397820..81397836,+!p2@ZBTB10!1.13!15.59!ZBTB10;;chrX:106960180..106960197,-!p2@TSC22D3!1.12!46.76!TSC22D3;;chr13:74707894..74707947,-!p6@KLF12!1.12!13.64!KLF12;;chr9:20622444..20622468,-!p2@MLLT3!1.11!38.97!MLLT3;;chr12:133706975..133707013,-!p3@ZNF891!1.10!15.59!ZNF891;;chr14:75988771..75988826,+!p1@BATF!1.10!15.59!BATF;;chr10:35416223..35416234,+!p12@CREM!1.10!11.69!CREM;;chrY:2803415..2803468,+!p1@ZFY!1.10!11.69!ZFY;;chr7:50344144..50344157,+!p6@IKZF1!1.10!11.69!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.10!11.69!IKZF1;;chr7:92076686..92076700,+!p3@GATAD1!1.10!11.69!GATAD1;;chr4:109089996..109090012,-!p5@LEF1!1.10!11.69!LEF1;;chr13:41593425..41593480,-!p1@ELF1!1.08!70.14!ELF1;;chr2:208394817..208394834,+!p3@CREB1!1.08!44.81!CREB1;;chrX:131623982..131624011,-!p6@MBNL3!1.07!15.59!MBNL3;;chr20:50159198..50159299,-!p1@NFATC2!1.06!15.59!NFATC2;;chr17:46621311..46621332,-!p8@HOXB2!1.06!13.64!HOXB2;;chr19:49140609..49140643,-!p1@DBP!1.05!58.45!DBP;;chr17:36861675..36861697,+!p3@MLLT6!1.04!23.38!MLLT6;;chr2:157198916..157198978,-!p2@NR4A2!1.03!35.07!NR4A2;;chr8:60031619..60031676,-!p1@TOX!1.03!21.43!TOX;;chr3:18487057..18487105,-!p4@SATB1!1.03!9.74!SATB1;;chr4:109086281..109086319,-!p9@LEF1!1.03!9.74!LEF1;;chr17:56565257..56565283,-!p2@HSF5!1.03!9.74!HSF5;;chr9:20621927..20621996,-!p3@MLLT3!1.01!15.59!MLLT3;;chr17:36861735..36861755,+!p4@MLLT6!1.00!15.59!MLLT6;;chr6:12009042..12009092,+!p6@HIVEP1!1.00!11.69!HIVEP1;;chr14:75745523..75745537,+!p1@FOS!0.99!1079.34!FOS;;chr9:3525867..3525902,-!p3@RFX3!0.99!31.17!RFX3;;chr16:89787937..89787971,+!p1@ZNF276!0.99!23.38!ZNF276;;chr13:41240737..41240787,-!p1@FOXO1!0.98!103.26!FOXO1;;chr12:72056800..72056834,+!p1@THAP2!0.98!11.69!THAP2;;chr10:35416125..35416138,+!p10@CREM!0.97!9.74!CREM;;chr3:18466787..18466839,-!p1@SATB1!0.96!37.02!SATB1;;chr7:21467674..21467727,+!p1@SP4!0.96!33.12!SP4;;chr6:135502501..135502546,+!p1@MYB!0.96!9.74!MYB;;chr5:131826457..131826514,-!p1@IRF1!0.94!311.72!IRF1;;chr14:65569101..65569119,-!p3@MAX!0.94!25.33!MAX;;chr15:60884747..60884774,-!p3@RORA!0.94!19.48!RORA;;chr17:38020481..38020506,-!p7@IKZF3!0.94!7.79!IKZF3;;chr17:38020516..38020544,-!p5@IKZF3!0.94!7.79!IKZF3;;chr19:16435423..16435484,+!p5@KLF2!0.94!7.79!KLF2;;chr10:135121763..135121783,+!p5@ZNF511!0.94!7.79!ZNF511;;chr14:64971893..64971928,-!p8@ZBTB25!0.94!7.79!ZBTB25;;chr19:54041574..54041589,+!p6@ZNF331!0.94!7.79!ZNF331;;chr21:30671130..30671140,+!p10@BACH1!0.94!7.79!BACH1;;chr6:106546834..106546850,+!p4@PRDM1!0.94!7.79!PRDM1;;chr7:50343864..50343888,+!p7@IKZF1!0.94!7.79!IKZF1;;chr2:214013461..214013517,-!p6@IKZF2!0.94!7.79!IKZF2;;chr2:214015379..214015410,-!p9@IKZF2!0.94!7.79!IKZF2;;chr2:214016254..214016282,-!p7@IKZF2!0.94!7.79!IKZF2;;chr3:18480173..18480189,-!p6@SATB1!0.94!7.79!SATB1;;chr18:77160282..77160343,+!p2@NFATC1!0.93!48.71!NFATC1;;chr19:12405645..12405685,-!p1@ZNF44!0.93!27.28!ZNF44;;chr10:35484053..35484076,+!p1@CREM!0.93!19.48!CREM;;chr2:61108650..61108687,+!p2@REL!0.92!37.02!REL;;chr12:72056773..72056796,+!p3@THAP2!0.92!9.74!THAP2;;chr2:214016496..214016544,-!p5@IKZF2!0.90!9.74!IKZF2;;chr19:57183114..57183145,-!p1@ZNF835!0.90!7.79!ZNF835;;chr19:49140595..49140607,-!p3@DBP!0.89!9.74!DBP;;chr3:101568349..101568365,+!p1@NFKBIZ!0.88!358.48!NFKBIZ;;chr15:31619326..31619390,+!p2@KLF13!0.88!79.88!KLF13;;chr14:64970494..64970578,-!p1@ZBTB25!0.88!70.14!ZBTB25;;chr3:23986824..23986848,+!p2@NR1D2!0.88!38.97!NR1D2;;chr7:104654718..104654741,+!p3@MLL5!0.88!9.74!MLL5;;chr10:8096772..8096787,+!p2@GATA3!0.88!7.79!GATA3;;chr19:19779686..19779697,+!p3@ZNF101!0.88!7.79!ZNF101;;chr4:38665810..38665827,+!p1@KLF3!0.87!99.36!KLF3;;chr19:20748574..20748599,-!p1@ZNF737!0.87!40.91!ZNF737;;chr9:73028332..73028385,-!p3@KLF9!0.87!23.38!KLF9;;chr2:148778973..148779035,+!p3@MBD5!0.87!17.53!MBD5;;chr19:38085768..38085821,+!p1@ZNF540!0.87!9.74!ZNF540;;chr7:99097863..99097936,-!p1@ZNF394!0.86!66.24!ZNF394;;chr7:64126503..64126528,+!p1@ZNF107!0.86!46.76!ZNF107;;chr10:104154246..104154347,+!p3@NFKB2!0.86!40.91!NFKB2;;chr19:19976683..19976709,+!p1@ZNF253!0.86!29.22!ZNF253;;chr5:132299572..132299623,-!p6@AFF4!0.86!11.69!AFF4;;chr6:15249128..15249177,+!p4@JARID2!0.86!11.69!JARID2;;chr3:114343195..114343206,-!p11@ZBTB20!0.86!7.79!ZBTB20;;chr11:67007548..67007610,+!p3@KDM2A!0.84!46.76!KDM2A;;chr8:81398444..81398472,+!p1@ZBTB10!0.84!25.33!ZBTB10;;chr19:20150268..20150298,-!p2@ZNF682!0.84!11.69!ZNF682;;chr17:37934392..37934398,-!p11@IKZF3!0.84!5.84!IKZF3;;chr6:28048343..28048354,+!p1@ZNF165!0.84!5.84!ZNF165;;chr7:50343510..50343521,+!p11@IKZF1!0.84!5.84!IKZF1;;chr4:109088940..109089037,-!p4@LEF1!0.84!5.84!LEF1;;chr4:109090106..109090124,-!p10@LEF1!0.84!5.84!LEF1;;chr4:149365827..149365870,-!p5@NR3C2!0.84!5.84!NR3C2;;chr4:149366111..149366128,-!p7@NR3C2!0.84!5.84!NR3C2;;chr10:35416172..35416184,+!p13@CREM!0.84!5.84!CREM;;chr10:35485013..35485034,+!p15@CREM!0.84!5.84!CREM;;chr12:56418637..56418648,+!p9@IKZF4!0.84!5.84!IKZF4;;chrY:21906761..21906810,-!p2@KDM5D!0.84!5.84!KDM5D;;chrY:21906623..21906637,-!p3@KDM5D!0.84!5.84!KDM5D;;chr9:20621834..20621884,-!p5@MLLT3!0.84!5.84!MLLT3;;chr19:54040550..54040594,+!p20@ZNF331!0.84!5.84!ZNF331;;chr19:54041603..54041615,+!p10@ZNF331!0.84!5.84!ZNF331;;chr19:54058108..54058119,+!p19@ZNF331!0.84!5.84!ZNF331;;chr20:56195525..56195556,-!p2@ZBP1!0.84!5.84!ZBP1;;chr11:128563948..128564003,+!p1@FLI1!0.83!74.03!FLI1;;chr7:64363638..64363667,+!p1@ZNF273!0.83!31.17!ZNF273;;chr13:74708029..74708077,-!p2@KLF12!0.83!17.53!KLF12;;chr9:102584262..102584276,+!p1@NR4A3!0.83!13.64!NR4A3;;chr5:43065197..43065244,+!p5@ZNF131!0.83!11.69!ZNF131;;chr19:12405606..12405629,-!p2@ZNF44!0.83!11.69!ZNF44;;chr10:3824332..3824425,-!p4@KLF6!0.83!9.74!KLF6;;chr17:40440481..40440550,+!p1@STAT5A!0.82!42.86!STAT5A;;chr19:52674696..52674758,-!p1@ZNF836!0.82!17.53!ZNF836;;chr19:11877805..11877832,+!p2@ZN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NFIA!0.36!1.95!NFIA;;chr20:51588873..51588953,+!p1@TSHZ2!0.36!1.95!TSHZ2;;chr12:12764917..12764931,+!p4@CREBL2!0.36!1.95!CREBL2;;chr13:46542074..46542106,-!p6@ZC3H13!0.36!1.95!ZC3H13;;chr14:35873101..35873119,-!p6@NFKBIA!0.36!1.95!NFKBIA;;chr14:69261310..69261326,-!p5@ZFP36L1!0.36!1.95!ZFP36L1;;chr3:14990132..14990175,+!p5@NR2C2!0.36!1.95!NR2C2;;chr8:128748308..128748324,+!p2@MYC!0.35!56.50!MYC;;chr20:46130619..46130664,+!p1@NCOA3!0.35!54.55!NCOA3;;chr1:211432700..211432753,+!p1@RCOR3!0.35!37.02!RCOR3;;chr9:117160738..117160782,-!p2@AKNA!0.35!7.79!AKNA;;chr4:38665866..38665878,+!p4@KLF3!0.35!5.84!KLF3;;chr5:178287112..178287133,+!p4@ZNF354B!0.35!1.95!ZNF354B;;chr6:15249097..15249115,+!p7@JARID2!0.35!1.95!JARID2;;chr6:35227247..35227280,+!p3@ZNF76!0.35!1.95!ZNF76;;chr16:3930724..3930735,-!p2@CREBBP!0.35!1.95!CREBBP;;chr18:14132422..14132440,-!p1@ZNF519!0.35!1.95!ZNF519;;chr19:45254529..45254561,+!p10@BCL3!0.35!1.95!BCL3;;chr19:57078386..57078407,+!p3@ZNF470!0.35!1.95!ZNF470;;chr1:41827095..41827155,+!p1@FOXO6!0.35!1.95!FOXO6;;chr1:45805788..45805801,+!p6@TOE1!0.35!1.95!TOE1;;chr1:8926369..8926385,-!p12@ENO1!0.35!1.95!ENO1;;chr20:44600199..44600219,-!p3@ZNF335!0.35!1.95!ZNF335;;chr11:67007611..67007622,+!p6@KDM2A!0.35!1.95!KDM2A;;chr18:48556573..48556640,+!p1@SMAD4!0.34!111.05!SMAD4;;chr18:32924372..32924430,-!p1@ZNF24!0.34!60.40!ZNF24;;chr5:176449684..176449722,+!p1@ZNF346!0.34!37.02!ZNF346;;chr19:58125580..58125639,+!p1@ZNF134!0.34!31.17!ZNF134;;chr2:70142189..70142223,+!p2@MXD1!0.34!13.64!MXD1;;chr8:144349606..144349656,+!p1@GLI4!0.34!13.64!GLI4;;chr8:145980808..145980922,-!p1@ZNF251!0.34!13.64!ZNF251;;chr17:5095126..5095169,-!p1@ZNF594!0.34!7.79!ZNF594;;chr19:12251144..12251181,-!p2@ZNF20!0.34!7.79!ZNF20;;chr7:99156314..99156372,+!p4@ZNF655!0.34!5.84!ZNF655;;chr6:144289132..144289134,-!p3@PLAGL1!0.34!3.90!PLAGL1;;chr19:22018938..22018963,-!p3@ZNF43!0.34!3.90!ZNF43;;chr19:47615426..47615439,-!p5@ZC3H4!0.34!3.90!ZC3H4;;chr19:53970970..53971021,+!p1@ZNF813!0.34!3.90!ZNF813;;chr10:63809134..63809145,+!p6@ARID5B!0.34!3.90!ARID5B;;chr10:111987079..111987115,+!p3@MXI1!0.34!1.95!MXI1;;chr1:158979680..158979683,+!p9@IFI16!0.34!1.95!IFI16;;chr1:38325227..38325246,-!p2@MTF1!0.34!1.95!MTF1;;chr15:85291372..85291405,+!p3@ZNF592!0.34!1.95!ZNF592;;chr17:65821795..65821826,+!p3@BPTF!0.34!1.95!BPTF;;chr4:87857491..87857519,+!p10@AFF1!0.34!1.95!AFF1;;chrX:131624056..131624069,-!p2@MBNL3!0.34!1.95!MBNL3;;chrX:84498989..84499003,+!p1@ZNF711!0.34!1.95!ZNF711;;chrX:107018969..107019024,-!p6@TSC22D3!0.34!1.95!TSC22D3;;chr20:44718538..44718612,-!p1@NCOA5!0.33!52.60!NCOA5;;chr20:62258402..62258464,-!p1@GMEB2!0.33!21.43!GMEB2;;chr21:44394645..44394737,+!p1@PKNOX1!0.33!15.59!PKNOX1;;chr9:99540335..99540388,-!p1@ZNF510!0.33!13.64!ZNF510;;chr7:99070499..99070523,+!p1@ZNF789!0.33!9.74!ZNF789;;chr10:63853436..63853442,+!p4@ARID5B!0.33!9.74!ARID5B;;chr19:57752022..57752108,+!p1@ZNF805!0.33!7.79!ZNF805;;chr7:99156145..99156207,+!p5@ZNF655!0.33!5.84!ZNF655;;chr3:63897742..63897797,+!p2@ATXN7!0.33!5.84!ATXN7;;chr4:56412978..56413003,-!p1@CLOCK!0.33!3.90!CLOCK;;chr4:76439649..76439662,+!p2@THAP6!0.33!3.90!THAP6;;chr7:102985288..102985310,-!p2@DNAJC2!0.33!3.90!DNAJC2;;chr7:129251614..129251630,+!p2@NRF1!0.33!3.90!NRF1;;chr12:133613937..133613994,+!p2@ZNF84!0.33!3.90!ZNF84;;chr14:35872926..35872951,-!p4@NFKBIA!0.33!1.95!NFKBIA;;chr3:23986876..23986885,+!p4@NR1D2!0.33!1.95!NR1D2;;chr4:185395191..185395226,-!p4@IRF2!0.33!1.95!IRF2;;chr4:87967965..87967983,+!p16@AFF1!0.33!1.95!AFF1;;chr1:41157671..41157695,+!p6@NFYC!0.33!1.95!NFYC;;chr1:78445179..78445193,-!p5@FUBP1!0.33!1.95!FUBP1;;chr20:35201857..35201882,+!p4@TGIF2!0.33!1.95!TGIF2;;chr6:43337124..43337144,-!p4@ZNF318!0.33!1.95!ZNF318;;chr15:56535722..56535764,-!p3@RFX7!0.33!1.95!RFX7;;chr15:74833547..74833567,+!p2@ARID3B!0.33!1.95!ARID3B;;chr16:88636875..88636886,+!p3@ZC3H18!0.33!1.95!ZC3H18;;chr19:18391652..18391669,-!p8@JUND!0.33!1.95!JUND;;chr8:28747884..28747938,+!p1@HMBOX1!0.32!23.38!HMBOX1;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13513.11907-125F8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13513.11907-125F8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13513.11907-125F8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13513.11907-125F8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13513.11907-125F8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11907-125F8
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
@@ Line 45: / Line 51: @@
 |library_id=CNhs13513
 |library_id_phase_based=2:CNhs13513
-|name="CD4+CD25+CD45RA+ naive regulatory T cells, donor3"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11907
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11907
+|name=CD4+CD25+CD45RA+ naive regulatory T cells, donor3
 |namespace=
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs13513,LSID1025,release012,COMPLETED"
+|profile_hcage=CNhs13513,LSID1025,release012,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11907-125F8;search_select_hide=table117:FF:11907-125F8
 }}

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FF:11907-125F8: Difference between revisions

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Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0