FF:11911-125G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005535 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008169;DRR009041;DRZ000466;DRZ001851;DRZ011816;DRZ013201 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011100 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11911-125G3 | |id=FF:11911-125G3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011100 | ||
|is_obsolete= | |||
|library_id=CNhs13548 | |||
|library_id_phase_based=2:CNhs13548 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11911 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11911 | |||
|name=CD14-CD16+ Monocytes, donor3 | |name=CD14-CD16+ Monocytes, donor3 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0948844206713595,0,0,0.0728614336604499,0,0.121469755650105,0,-0.190736881233106,0.310389252332245,0,0,0,0,0,0,0,0,0,0.0728614336604499,0.135237094603344,0,0,0.084887896360612,0,0,0,0,0,0.0372791983352863,0,0,0.460620363779428,0,0,0,0,0,0,0,0.0728614336604499,0,0,0,0,-0.0295683719530858,0.109750373074081,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.321388154237037,0,-0.10535245091327,0,0.224395792994432,0,0.0728614336604499,0.324914108737653,0,0.314688896421911,0,0,0,0,0,0.00123885867700635,0.0728614336604499,0,1.46161279581631,0,0,0.632250195478005,0,0,0,0,0.036430716830225,0,0,0.0385860780067487,0,-0.0733504884037417,-0.432274013869315,0,0,0,-0.0584468268118252,-0.143578855394197,0,0,0.160694077118518,0,-0.0980353512377064,0.137082932614029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0227318594320588,0,0,0,-0.0291271477979856,-0.0936326285156418,0,0,0.0222815818611596,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.135237094603344,0,0.0728614336604499,0,0,0,0,0,0,-0.00896796857652488,0,-0.338849124148665,0.177873011713565,0.036430716830225,0.281787785736491,-0.188045933659387,0,0,0,0,0,0,0.135237094603344,0,0,-0.128119866952565,0.135237094603344,-0.0504125515893149,0,0,0.0455457428118712,0,0,-0.0672613241893677,0,-0.137827344319285,0.00451717258308168,0,0,0,0,-0.0835166686781329,0,0.0688893575489786,0.395746138176949,0,-0.543679877676825,0.226075288955309,0,0,0,-0.503201342301122,-1.01837891339289,0,0,0.178764203904834,0.527864448199485,0,0,-0.391044581551635,0,-0.450101346968661,-0.0517432564335094,0,-0.207139173544513,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0887776899699293,-0.0304099808375785,0,0,-0.0563638323550114,-0.336416909088602,0,-0.0138323107379372,-0.238049061353223,-0.350736013296859,0.00768700523411815,-0.788958086043456,0,0.807295777290446,0.028421832615443,-0.169614693955793,0.111726979319416,-0.147401849371139,-0.189981719549847,0,-0.390444735667114,-0.0701627680618351,-0.00277623550150727,0.0165541940428293,-0.204854032625392,-1.2314085082871,-0.204594456562883,0,0,-0.0775089264793031,-0.261085007358141,0,-0.103968203991747,-0.208326928740282,-0.0553184929003945,-0.40687409764923,0.205788312805477,-0.289162132152471,0.322663729019156,-0.0395325284566706,0.489730464159375,-0.176486866616927,-0.4215723249037,0,0,-0.0366308862699836,0.064188345200757,-0.281853327228034,1.27876456698484,-0.031957346157762,0.247122724565717,0.0668928335259756,0.036430716830225,-0.589433619114299,-0.0407583496152644,0,0,-0.296989445134921,0,0,0,0,0,-0.0856593068857456,0.220120410404101,0.271203218323744,0,-0.264611194008333,-0.157449019425251,-0.229667533050915,0,0.055943530100527,0.0193353591190002,0.0289371646430353,-0.078523089417098,0,-0.269366096768723,-0.192603089068825,-0.164990696339003,-0.287157710788394,-0.0584468268118252,0.251129935219469,0.0779871378116251,-0.433034938355628,-0.716078431129777,-0.30152433965726,-0.0152653988148378,-0.162490562382342,-0.432274013869315,0.543455374227716,-0.0799274326311026,-0.442636011361326,0,-0.150328882636081,0,0.104056739808186,0.109396617108752,0.303241169926234,-0.258645965736749,-0.304052279977342,0.87890093162077,0,-0.0849771246577885,-0.788130937773974,0,-0.135723143846782,-0.0164716176863073,0,-0.0775056496741894,-0.697695966512583,0.634588636592136,-0.10255873984897,-0.0256352421382743,-0.790080158389657,0,0,-0.21754314880004,0.00273486894465086,0,0.0559279193898052,0.00414099208704399,0.0963675261085263,0.0737977679077852,0.135237094603344,0,-0.645700337992725,0,0,-0.60592806381803,-0.164007090724503,-0.619783323958633,0.39704131041415,0.036430716830225,-0.108622809454255,0,0,0.104260019771316,0,-0.158478521005285,0,0.135237094603344,-0.249881296598824,-0.116628112990133,0,0.264113338826483,0,-0.092962346093212,0,0,0,0,0,0,0,0.0931454159449245,-0.354833330216448,0,-0.0733504884037417,0,0,0,0,0,0,0,0,-1.45709374421633,0.0270392050161512,-0.12301741567642,0,0,0.036430716830225,0,-0.215723402553475,0.429013633383282,0,0.00337438810571214,0,0,0,0,0.103627851553508,0,0,0,0.11910545335452,0.0151309766067859,0.0947171175057878,0.135237094603344,0,0,0.274165865228057,0,0,0,0,0.19826364062318,0,0,-0.496693078783036,0,0.14756576424064,-0.0815818795468414,0,-0.353468412396862,-0.162651631548981,-1.30962034064846,0,0,-0.023136225080848,0,0,0.0798603028599012,0.0528668716376775,0,0,0,0,0.067618547301672,0,0,0.321388154237037,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.295329909429089,0.0975447846842088,0,0,0,0,0,0,0,-0.0241060230789031,-0.0231630209770897,0,0,0,0,0.00123885867700635,0.0728614336604499,0,0,-0.398564506002792,0,0,0,0,0,0.224395792994432,0,0,0,0.189768841342719,0.485541410061147,0,0,-0.14212503759017,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234358360716399,-0.190736881233106,0,0.0728614336604499,0,0,0,0,0,-0.201971864545641,0,0.135237094603344,0,0,1.80718550362948,0,0,0,-0.104796384789156,0,0.121469755650105,0.0728614336604499,0,0.189768841342719,0,0,0.0728614336604499,0.067618547301672,0,0,0,0.135237094603344,0,0,0,0,0,0.281787785736491,0,0,0,0,-0.61004700871208,-0.0247755787802223,0,-0.0515063925331991,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0.391166886134781,0,0,0.036430716830225,0,0,0,0,0,0,0,0,0.134506692991136,0,0,0,0.0912972506497943,0,0,0,0,0,0,0,0.0372791983352863,0,0,0.183631060279882,0,0,0,0,0,0,-0.287976840656709,-0.283220399823148,-0.125394181036834,0,0,0,-0.054385572482455,0.321388154237037,0,-0.140103520715677,0,-0.0667773874189013,0.0728614336604499,0,0,0,0,0,0,0,0,0,0,0.036430716830225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084887896360612,0,0,0,0,0,0,0,0,0,0,0,0.067618547301672,0,0,0,0,0,0,0.0728614336604499,0,0,0,0,0,0,0,0,0,0.067618547301672,0,0.140893892868245,0,0,0,0,0.155757478067303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135237094603344,0.109750373074081,0,0,0,-0.140224795996594,0,0,0,0,0,0,0.135237094603344,0,0.0728614336604499,0,0,0,0,0,0,0,0,0,0,0,0.135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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=2.1042 | |rna_weight_ug=2.1042 | ||
|sample_age=23 | |sample_age=23 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.5040810684334e-212!GO:0043227;membrane-bound organelle;5.76306146730688e-167!GO:0043231;intracellular membrane-bound organelle;1.10805624600814e-166!GO:0043226;organelle;6.63355143975475e-155!GO:0043229;intracellular organelle;3.56795333382342e-154!GO:0005737;cytoplasm;1.80532029842268e-148!GO:0044444;cytoplasmic part;2.10468769823385e-106!GO:0044422;organelle part;7.90893262944666e-102!GO:0044446;intracellular organelle part;3.71590733542289e-100!GO:0032991;macromolecular complex;4.44198842119702e-88!GO:0044237;cellular metabolic process;1.03292539860553e-86!GO:0044238;primary metabolic process;1.397192861639e-82!GO:0043170;macromolecule metabolic process;1.7563974245542e-80!GO:0030529;ribonucleoprotein complex;1.13590171582799e-79!GO:0003723;RNA binding;6.42035318114269e-71!GO:0005634;nucleus;1.50001261789208e-68!GO:0044428;nuclear part;4.76358112558126e-63!GO:0005739;mitochondrion;3.24288943443326e-60!GO:0043233;organelle lumen;7.2028155863099e-59!GO:0031974;membrane-enclosed lumen;7.2028155863099e-59!GO:0006412;translation;2.79909956248463e-54!GO:0019538;protein metabolic process;1.14841613816642e-48!GO:0005515;protein binding;1.88226909793667e-48!GO:0033036;macromolecule localization;4.68541433815374e-47!GO:0044267;cellular protein metabolic process;1.98066794635655e-46!GO:0044260;cellular macromolecule metabolic process;2.43267561138654e-46!GO:0015031;protein transport;6.56829960510151e-46!GO:0006396;RNA processing;1.68487062706908e-45!GO:0010467;gene expression;2.52677323856586e-45!GO:0043283;biopolymer metabolic process;2.5951338660886e-45!GO:0005840;ribosome;3.60312905950325e-45!GO:0045184;establishment of protein localization;3.60312905950325e-45!GO:0008104;protein localization;9.34281216410183e-44!GO:0043234;protein complex;1.75267560536529e-43!GO:0009059;macromolecule biosynthetic process;1.26636152592078e-41!GO:0044429;mitochondrial part;1.15256977036675e-40!GO:0003735;structural constituent of ribosome;9.01202124655389e-40!GO:0016071;mRNA metabolic process;2.34041230863921e-39!GO:0031090;organelle membrane;5.10891596946579e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.22800499035242e-38!GO:0031981;nuclear lumen;1.42650477192055e-38!GO:0005829;cytosol;1.42650477192055e-38!GO:0044249;cellular biosynthetic process;1.31940643167547e-37!GO:0009058;biosynthetic process;1.53936870069056e-36!GO:0033279;ribosomal subunit;3.62478978994922e-36!GO:0008380;RNA splicing;6.32979132850962e-36!GO:0031967;organelle envelope;6.77490082016854e-36!GO:0031975;envelope;1.44013432828131e-35!GO:0006397;mRNA processing;2.71097022120539e-34!GO:0006886;intracellular protein transport;2.69538819528426e-29!GO:0046907;intracellular transport;1.14888584511742e-28!GO:0016043;cellular component organization and biogenesis;1.20453907202907e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.51765758388686e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.05799723258104e-28!GO:0005681;spliceosome;3.49805742837026e-27!GO:0065003;macromolecular complex assembly;1.04959674363837e-26!GO:0005740;mitochondrial envelope;3.08388679133492e-26!GO:0005654;nucleoplasm;4.10173798534199e-26!GO:0003676;nucleic acid binding;1.31319238894179e-25!GO:0031966;mitochondrial membrane;3.87250074447157e-25!GO:0019866;organelle inner membrane;2.17611361665144e-24!GO:0044445;cytosolic part;7.29047651749618e-24!GO:0006119;oxidative phosphorylation;2.89421389932796e-23!GO:0005743;mitochondrial inner membrane;3.37240458989164e-22!GO:0000166;nucleotide binding;5.30321600838769e-22!GO:0022607;cellular component assembly;5.65270605329741e-22!GO:0051649;establishment of cellular localization;1.99195654030384e-21!GO:0044451;nucleoplasm part;7.48915429422521e-21!GO:0051641;cellular localization;7.86446812393283e-21!GO:0006259;DNA metabolic process;1.06980221927712e-20!GO:0022618;protein-RNA complex assembly;2.18248688185993e-20!GO:0006996;organelle organization and biogenesis;2.40886853715606e-20!GO:0044455;mitochondrial membrane part;4.1823590399643e-20!GO:0006915;apoptosis;1.24205876524401e-19!GO:0012501;programmed cell death;1.51755602558443e-19!GO:0016070;RNA metabolic process;3.15933794927307e-19!GO:0006512;ubiquitin cycle;4.63263080303196e-19!GO:0015935;small ribosomal subunit;5.4233206002997e-19!GO:0015934;large ribosomal subunit;4.02976196483931e-18!GO:0008219;cell death;8.08038104499808e-18!GO:0016265;death;8.08038104499808e-18!GO:0044265;cellular macromolecule catabolic process;1.79363264227486e-17!GO:0031980;mitochondrial lumen;3.36791213834108e-17!GO:0005759;mitochondrial matrix;3.36791213834108e-17!GO:0016874;ligase activity;3.36791213834108e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.88236530402543e-17!GO:0016462;pyrophosphatase activity;9.44167671608096e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;9.94615617788383e-17!GO:0017111;nucleoside-triphosphatase activity;1.4443839033268e-16!GO:0005746;mitochondrial respiratory chain;1.88832392764312e-16!GO:0043412;biopolymer modification;3.79183777024765e-16!GO:0008134;transcription factor binding;4.40238070475154e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.76998235852751e-16!GO:0032553;ribonucleotide binding;1.11695543877106e-15!GO:0032555;purine ribonucleotide binding;1.11695543877106e-15!GO:0044248;cellular catabolic process;1.19376664229003e-15!GO:0017076;purine nucleotide binding;1.26067280919171e-15!GO:0008135;translation factor activity, nucleic acid binding;1.75996019165606e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.87639100403911e-15!GO:0006605;protein targeting;3.34044130368948e-15!GO:0051186;cofactor metabolic process;4.26592907995741e-15!GO:0019941;modification-dependent protein catabolic process;5.07779997097322e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.07779997097322e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;5.37110536794407e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.05541143990789e-15!GO:0003954;NADH dehydrogenase activity;6.05541143990789e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.05541143990789e-15!GO:0006457;protein folding;7.40544206952902e-15!GO:0016604;nuclear body;8.67443570789473e-15!GO:0044257;cellular protein catabolic process;8.96018975492582e-15!GO:0043285;biopolymer catabolic process;1.00236274761866e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.09236921359256e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.90407809816435e-14!GO:0006464;protein modification process;4.437055314831e-14!GO:0009057;macromolecule catabolic process;9.22258323418231e-14!GO:0006413;translational initiation;1.01469292133309e-13!GO:0043228;non-membrane-bound organelle;1.22355197106234e-13!GO:0043232;intracellular non-membrane-bound organelle;1.22355197106234e-13!GO:0005730;nucleolus;1.26070996559771e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.35865278974135e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.53843224136678e-13!GO:0042773;ATP synthesis coupled electron transport;1.53843224136678e-13!GO:0003743;translation initiation factor activity;3.8719815397523e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.8719815397523e-13!GO:0045271;respiratory chain complex I;3.8719815397523e-13!GO:0005747;mitochondrial respiratory chain complex I;3.8719815397523e-13!GO:0016192;vesicle-mediated transport;5.45635143442813e-13!GO:0006913;nucleocytoplasmic transport;8.02907899428797e-13!GO:0043687;post-translational protein modification;8.78349673757261e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.27854777192253e-12!GO:0006974;response to DNA damage stimulus;1.29677025833762e-12!GO:0012505;endomembrane system;1.3618382335007e-12!GO:0051169;nuclear transport;1.43769170456336e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.82078781756466e-12!GO:0000375;RNA splicing, via transesterification reactions;1.82078781756466e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.82078781756466e-12!GO:0048770;pigment granule;1.84664605121399e-12!GO:0042470;melanosome;1.84664605121399e-12!GO:0006732;coenzyme metabolic process;2.09380592473251e-12!GO:0016607;nuclear speck;2.96026301410589e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.70069566613981e-12!GO:0042981;regulation of apoptosis;4.31973393937332e-12!GO:0005524;ATP binding;5.86139203699902e-12!GO:0005761;mitochondrial ribosome;7.45719099693324e-12!GO:0000313;organellar ribosome;7.45719099693324e-12!GO:0043067;regulation of programmed cell death;7.57562507023327e-12!GO:0032559;adenyl ribonucleotide binding;9.47679446347367e-12!GO:0030554;adenyl nucleotide binding;1.29597334506506e-11!GO:0016787;hydrolase activity;1.71732493665314e-11!GO:0006446;regulation of translational initiation;1.91716635404664e-11!GO:0005773;vacuole;3.50478221054835e-11!GO:0030163;protein catabolic process;8.20048916491235e-11!GO:0005768;endosome;8.33831736496922e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;9.20466303322422e-11!GO:0042623;ATPase activity, coupled;1.41072509143672e-10!GO:0008639;small protein conjugating enzyme activity;1.54478372831396e-10!GO:0016887;ATPase activity;1.65439944744135e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.13244309989862e-10!GO:0000323;lytic vacuole;2.39443993811634e-10!GO:0005764;lysosome;2.39443993811634e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.45885699986982e-10!GO:0006323;DNA packaging;2.89139818838102e-10!GO:0009259;ribonucleotide metabolic process;2.93770929112741e-10!GO:0004842;ubiquitin-protein ligase activity;2.96400049755634e-10!GO:0003712;transcription cofactor activity;3.34512610918546e-10!GO:0005794;Golgi apparatus;3.42708826346312e-10!GO:0019787;small conjugating protein ligase activity;3.66697713968001e-10!GO:0006281;DNA repair;3.88891669017306e-10!GO:0006163;purine nucleotide metabolic process;4.00746141625261e-10!GO:0017038;protein import;4.11654837774552e-10!GO:0006164;purine nucleotide biosynthetic process;4.25101335857152e-10!GO:0051082;unfolded protein binding;4.51674615972871e-10!GO:0009152;purine ribonucleotide biosynthetic process;6.93579198118581e-10!GO:0009150;purine ribonucleotide metabolic process;7.08698250511753e-10!GO:0015078;hydrogen ion transmembrane transporter activity;7.7698919979303e-10!GO:0005635;nuclear envelope;7.90562746754749e-10!GO:0009260;ribonucleotide biosynthetic process;9.13378010806674e-10!GO:0051246;regulation of protein metabolic process;9.22973250838262e-10!GO:0051276;chromosome organization and biogenesis;9.98090190029423e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.02971706328169e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.18407641042882e-09!GO:0006793;phosphorus metabolic process;1.25457378513489e-09!GO:0006796;phosphate metabolic process;1.25457378513489e-09!GO:0048193;Golgi vesicle transport;1.28799798401949e-09!GO:0042254;ribosome biogenesis and assembly;1.74085229451536e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.07759893075959e-09!GO:0050794;regulation of cellular process;2.12280592675396e-09!GO:0044453;nuclear membrane part;3.27614733778352e-09!GO:0004386;helicase activity;3.40947360606215e-09!GO:0019829;cation-transporting ATPase activity;4.07809691734903e-09!GO:0050657;nucleic acid transport;4.79569312054229e-09!GO:0051236;establishment of RNA localization;4.79569312054229e-09!GO:0050658;RNA transport;4.79569312054229e-09!GO:0015986;ATP synthesis coupled proton transport;5.06850185928039e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.06850185928039e-09!GO:0009056;catabolic process;5.7452551962291e-09!GO:0051188;cofactor biosynthetic process;6.41357738372847e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.08340001580789e-09!GO:0008026;ATP-dependent helicase activity;7.18977648883453e-09!GO:0006403;RNA localization;7.348061447784e-09!GO:0007243;protein kinase cascade;9.18788608355591e-09!GO:0031965;nuclear membrane;1.05748986187327e-08!GO:0008565;protein transporter activity;1.2071615497442e-08!GO:0005783;endoplasmic reticulum;1.75284031839543e-08!GO:0005643;nuclear pore;2.08605070475632e-08!GO:0009055;electron carrier activity;2.33446778991551e-08!GO:0016469;proton-transporting two-sector ATPase complex;2.37397794095676e-08!GO:0009060;aerobic respiration;2.40285148731396e-08!GO:0065002;intracellular protein transport across a membrane;2.41079820789154e-08!GO:0016310;phosphorylation;2.90384921112577e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.29051769099441e-08!GO:0007049;cell cycle;3.51520749512286e-08!GO:0009719;response to endogenous stimulus;3.68295080480067e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.69989407124375e-08!GO:0016881;acid-amino acid ligase activity;3.69989407124375e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.77368286498055e-08!GO:0048523;negative regulation of cellular process;4.09763018764207e-08!GO:0006754;ATP biosynthetic process;4.54641528356484e-08!GO:0006753;nucleoside phosphate metabolic process;4.54641528356484e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.35335718534353e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.35335718534353e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.35335718534353e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.35335718534353e-08!GO:0065009;regulation of a molecular function;9.1580475309545e-08!GO:0009108;coenzyme biosynthetic process;9.1851528283854e-08!GO:0016568;chromatin modification;9.80104119240779e-08!GO:0051726;regulation of cell cycle;1.1057979686367e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.1984660528106e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.24005602704361e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.24005602704361e-07!GO:0004298;threonine endopeptidase activity;1.25232793723823e-07!GO:0006399;tRNA metabolic process;1.26105385933013e-07!GO:0051170;nuclear import;1.26105385933013e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.39673325464842e-07!GO:0051028;mRNA transport;1.46129311896682e-07!GO:0000074;regulation of progression through cell cycle;1.4924843895988e-07!GO:0007242;intracellular signaling cascade;1.50474486708089e-07!GO:0009141;nucleoside triphosphate metabolic process;1.83280769903556e-07!GO:0046034;ATP metabolic process;1.83415219774423e-07!GO:0045333;cellular respiration;1.84397658519893e-07!GO:0006606;protein import into nucleus;2.66324489127723e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.68271358070703e-07!GO:0006417;regulation of translation;3.1270366848323e-07!GO:0005694;chromosome;3.72820861493346e-07!GO:0044432;endoplasmic reticulum part;3.88900839261968e-07!GO:0046930;pore complex;4.24618757422012e-07!GO:0005770;late endosome;4.63114741817233e-07!GO:0016779;nucleotidyltransferase activity;4.71037523710007e-07!GO:0043566;structure-specific DNA binding;4.71238694451901e-07!GO:0016072;rRNA metabolic process;4.75889176863839e-07!GO:0006366;transcription from RNA polymerase II promoter;4.88124257902717e-07!GO:0009615;response to virus;5.17042317831909e-07!GO:0003713;transcription coactivator activity;6.11589398215026e-07!GO:0009117;nucleotide metabolic process;7.13341482549523e-07!GO:0019222;regulation of metabolic process;8.33322229650088e-07!GO:0006364;rRNA processing;8.36726781650693e-07!GO:0006333;chromatin assembly or disassembly;8.40714732068826e-07!GO:0045786;negative regulation of progression through cell cycle;1.04265474187056e-06!GO:0065004;protein-DNA complex assembly;1.10964066938951e-06!GO:0048519;negative regulation of biological process;1.26821390730785e-06!GO:0003697;single-stranded DNA binding;1.27061303405624e-06!GO:0043069;negative regulation of programmed cell death;1.28166145871305e-06!GO:0031324;negative regulation of cellular metabolic process;1.31616170942524e-06!GO:0043065;positive regulation of apoptosis;1.4774465434383e-06!GO:0043066;negative regulation of apoptosis;1.54833478435074e-06!GO:0006099;tricarboxylic acid cycle;1.68066135962944e-06!GO:0046356;acetyl-CoA catabolic process;1.68066135962944e-06!GO:0032446;protein modification by small protein conjugation;2.10891334369585e-06!GO:0043068;positive regulation of programmed cell death;2.2563463326711e-06!GO:0019899;enzyme binding;2.38162802324208e-06!GO:0045259;proton-transporting ATP synthase complex;2.50839632885851e-06!GO:0051187;cofactor catabolic process;2.57583177381866e-06!GO:0006084;acetyl-CoA metabolic process;2.60220433769092e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.66781728489836e-06!GO:0006752;group transfer coenzyme metabolic process;3.20145414063205e-06!GO:0050789;regulation of biological process;3.30457750505941e-06!GO:0016567;protein ubiquitination;3.39712895599691e-06!GO:0006461;protein complex assembly;3.46723562539161e-06!GO:0005525;GTP binding;4.37877145471201e-06!GO:0000245;spliceosome assembly;4.78575366016518e-06!GO:0006916;anti-apoptosis;5.40140132771257e-06!GO:0031326;regulation of cellular biosynthetic process;5.49970344322937e-06!GO:0022402;cell cycle process;5.49970344322937e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.53521854446762e-06!GO:0044427;chromosomal part;6.09957238619892e-06!GO:0007005;mitochondrion organization and biogenesis;6.39500020727497e-06!GO:0005789;endoplasmic reticulum membrane;6.54787052681517e-06!GO:0007264;small GTPase mediated signal transduction;6.69988494672407e-06!GO:0016564;transcription repressor activity;7.32343434646053e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.04155937076571e-06!GO:0004812;aminoacyl-tRNA ligase activity;8.04155937076571e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.04155937076571e-06!GO:0000151;ubiquitin ligase complex;8.04433673485146e-06!GO:0005793;ER-Golgi intermediate compartment;9.43983675926879e-06!GO:0016740;transferase activity;9.69095398280853e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.07122073225376e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.14037514301607e-05!GO:0008047;enzyme activator activity;1.17862886006349e-05!GO:0009967;positive regulation of signal transduction;1.25280572018885e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.31087141374452e-05!GO:0043038;amino acid activation;1.45836221474132e-05!GO:0006418;tRNA aminoacylation for protein translation;1.45836221474132e-05!GO:0043039;tRNA aminoacylation;1.45836221474132e-05!GO:0009109;coenzyme catabolic process;1.51562751939733e-05!GO:0006917;induction of apoptosis;1.60547215086491e-05!GO:0048475;coated membrane;1.69045738040311e-05!GO:0030117;membrane coat;1.69045738040311e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.71828626751453e-05!GO:0044440;endosomal part;1.73312871629211e-05!GO:0010008;endosome membrane;1.73312871629211e-05!GO:0030120;vesicle coat;1.88943585610554e-05!GO:0030662;coated vesicle membrane;1.88943585610554e-05!GO:0005774;vacuolar membrane;1.98808797696656e-05!GO:0003924;GTPase activity;2.14190849018917e-05!GO:0000785;chromatin;2.2104777049472e-05!GO:0012502;induction of programmed cell death;2.37851392177064e-05!GO:0031323;regulation of cellular metabolic process;2.43856156147641e-05!GO:0016563;transcription activator activity;2.49087196877415e-05!GO:0016197;endosome transport;2.73005513497713e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.76438647844272e-05!GO:0009889;regulation of biosynthetic process;2.80874746739274e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.21747145833567e-05!GO:0015399;primary active transmembrane transporter activity;3.21747145833567e-05!GO:0006613;cotranslational protein targeting to membrane;3.21747145833567e-05!GO:0016481;negative regulation of transcription;3.85428577234243e-05!GO:0003724;RNA helicase activity;3.88475992486825e-05!GO:0050790;regulation of catalytic activity;4.43857226280118e-05!GO:0008654;phospholipid biosynthetic process;4.77020205921959e-05!GO:0032561;guanyl ribonucleotide binding;4.90600584102683e-05!GO:0019001;guanyl nucleotide binding;4.90600584102683e-05!GO:0031252;leading edge;5.26304984339224e-05!GO:0009892;negative regulation of metabolic process;5.52321367078085e-05!GO:0044437;vacuolar part;6.29824573917743e-05!GO:0008632;apoptotic program;6.3232503169213e-05!GO:0006401;RNA catabolic process;7.12521967934404e-05!GO:0022890;inorganic cation transmembrane transporter activity;7.45446795998304e-05!GO:0051168;nuclear export;9.38325292273623e-05!GO:0048522;positive regulation of cellular process;0.000104951785091589!GO:0006950;response to stress;0.000110761872764472!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000113955755505647!GO:0005762;mitochondrial large ribosomal subunit;0.00011409063413775!GO:0000315;organellar large ribosomal subunit;0.00011409063413775!GO:0009165;nucleotide biosynthetic process;0.00013507588396517!GO:0005885;Arp2/3 protein complex;0.000138253799245842!GO:0031497;chromatin assembly;0.00013888118646472!GO:0006612;protein targeting to membrane;0.000141317149051275!GO:0005765;lysosomal membrane;0.00014150800089073!GO:0008234;cysteine-type peptidase activity;0.00014977145257152!GO:0006260;DNA replication;0.000155575084137215!GO:0015992;proton transport;0.000161536468558817!GO:0006818;hydrogen transport;0.000169388572059689!GO:0007034;vacuolar transport;0.00019025616603931!GO:0006334;nucleosome assembly;0.000194890394523167!GO:0006091;generation of precursor metabolites and energy;0.000197443796562561!GO:0043021;ribonucleoprotein binding;0.000204417100380121!GO:0005667;transcription factor complex;0.000211189129649115!GO:0051336;regulation of hydrolase activity;0.000218537182225127!GO:0005798;Golgi-associated vesicle;0.000237137428025369!GO:0003729;mRNA binding;0.000241435794628036!GO:0030695;GTPase regulator activity;0.000274306724359128!GO:0031902;late endosome membrane;0.000277806474473277!GO:0005096;GTPase activator activity;0.000307052378386117!GO:0044262;cellular carbohydrate metabolic process;0.000329987135153606!GO:0006402;mRNA catabolic process;0.000371556822347661!GO:0008186;RNA-dependent ATPase activity;0.000397304393360093!GO:0005769;early endosome;0.000401475197124849!GO:0010468;regulation of gene expression;0.000441893820521853!GO:0043623;cellular protein complex assembly;0.000486486125402695!GO:0051427;hormone receptor binding;0.00051252804732994!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000567576827782848!GO:0043492;ATPase activity, coupled to movement of substances;0.000569269612024304!GO:0003714;transcription corepressor activity;0.000569484241699441!GO:0007050;cell cycle arrest;0.000589807193468714!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000603383205570368!GO:0044431;Golgi apparatus part;0.000604070688237988!GO:0004674;protein serine/threonine kinase activity;0.000648446191322656!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000669034116785644!GO:0030384;phosphoinositide metabolic process;0.000677311240564232!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00068727466604905!GO:0048518;positive regulation of biological process;0.000713231681789393!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000776472140317146!GO:0035257;nuclear hormone receptor binding;0.000947145001634088!GO:0005813;centrosome;0.0010337210002926!GO:0065007;biological regulation;0.00105052081887497!GO:0004004;ATP-dependent RNA helicase activity;0.00109202742313503!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00109202742313503!GO:0003899;DNA-directed RNA polymerase activity;0.00113314594697547!GO:0000314;organellar small ribosomal subunit;0.00114186802802015!GO:0005763;mitochondrial small ribosomal subunit;0.00114186802802015!GO:0007265;Ras protein signal transduction;0.00118240150958286!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00120217947608947!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00125526163972753!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00125526163972753!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00125526163972753!GO:0003690;double-stranded DNA binding;0.00126554965894852!GO:0046489;phosphoinositide biosynthetic process;0.00129923483076863!GO:0015980;energy derivation by oxidation of organic compounds;0.00153326807123254!GO:0016044;membrane organization and biogenesis;0.00157447232647807!GO:0043681;protein import into mitochondrion;0.00158829665681395!GO:0007041;lysosomal transport;0.00160367675183235!GO:0001726;ruffle;0.00167167156294086!GO:0006350;transcription;0.00176878794468378!GO:0031072;heat shock protein binding;0.00177380407433283!GO:0045454;cell redox homeostasis;0.00182365327602029!GO:0031982;vesicle;0.00199797607906837!GO:0046474;glycerophospholipid biosynthetic process;0.00199896650722739!GO:0016491;oxidoreductase activity;0.00206433928481212!GO:0043087;regulation of GTPase activity;0.00219064787291424!GO:0032940;secretion by cell;0.00222405619652465!GO:0019843;rRNA binding;0.0023284841297294!GO:0046483;heterocycle metabolic process;0.00235637796724792!GO:0007040;lysosome organization and biogenesis;0.00261514883857195!GO:0006650;glycerophospholipid metabolic process;0.00268361312539019!GO:0005815;microtubule organizing center;0.0027071962876074!GO:0016363;nuclear matrix;0.00272123725330962!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00275032228956637!GO:0006383;transcription from RNA polymerase III promoter;0.00277530333030957!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00293636536270548!GO:0051090;regulation of transcription factor activity;0.00306518778566065!GO:0009966;regulation of signal transduction;0.00311623500497059!GO:0009607;response to biotic stimulus;0.00315979553813363!GO:0000287;magnesium ion binding;0.0034110748425225!GO:0000278;mitotic cell cycle;0.00344109327107536!GO:0006414;translational elongation;0.00370036250656111!GO:0051540;metal cluster binding;0.00370192937205281!GO:0051536;iron-sulfur cluster binding;0.00370192937205281!GO:0033116;ER-Golgi intermediate compartment membrane;0.00414122399979987!GO:0016853;isomerase activity;0.00443413080353663!GO:0016251;general RNA polymerase II transcription factor activity;0.00448195838730115!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00450639377611503!GO:0006611;protein export from nucleus;0.0045932407436356!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00465197875595839!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00465197875595839!GO:0051539;4 iron, 4 sulfur cluster binding;0.00479108872744534!GO:0008033;tRNA processing;0.00479108872744534!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00479108872744534!GO:0033033;negative regulation of myeloid cell apoptosis;0.00479108872744534!GO:0001803;regulation of type III hypersensitivity;0.00479108872744534!GO:0032733;positive regulation of interleukin-10 production;0.00479108872744534!GO:0033025;regulation of mast cell apoptosis;0.00479108872744534!GO:0001805;positive regulation of type III hypersensitivity;0.00479108872744534!GO:0033023;mast cell homeostasis;0.00479108872744534!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.00479108872744534!GO:0033032;regulation of myeloid cell apoptosis;0.00479108872744534!GO:0001802;type III hypersensitivity;0.00479108872744534!GO:0033028;myeloid cell apoptosis;0.00479108872744534!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.00479108872744534!GO:0033026;negative regulation of mast cell apoptosis;0.00479108872744534!GO:0033024;mast cell apoptosis;0.00479108872744534!GO:0048500;signal recognition particle;0.00504828842329881!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00504828842329881!GO:0015002;heme-copper terminal oxidase activity;0.00504828842329881!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00504828842329881!GO:0004129;cytochrome-c oxidase activity;0.00504828842329881!GO:0006352;transcription initiation;0.00505592476620629!GO:0004197;cysteine-type endopeptidase activity;0.00514634190042025!GO:0006626;protein targeting to mitochondrion;0.00520248182319527!GO:0031988;membrane-bound vesicle;0.00535757874496421!GO:0005083;small GTPase regulator activity;0.00536029715466226!GO:0003725;double-stranded RNA binding;0.00536429266545882!GO:0051252;regulation of RNA metabolic process;0.0053713905406817!GO:0031410;cytoplasmic vesicle;0.00598579597934094!GO:0005684;U2-dependent spliceosome;0.00600531379826924!GO:0051789;response to protein stimulus;0.00608972224223177!GO:0006986;response to unfolded protein;0.00608972224223177!GO:0045892;negative regulation of transcription, DNA-dependent;0.00628406834273411!GO:0007033;vacuole organization and biogenesis;0.00628406834273411!GO:0006261;DNA-dependent DNA replication;0.00642256089807515!GO:0003746;translation elongation factor activity;0.00644412214909599!GO:0030693;caspase activity;0.00652788759082853!GO:0016788;hydrolase activity, acting on ester bonds;0.00712216643731899!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00718687961984498!GO:0005741;mitochondrial outer membrane;0.00722949816696188!GO:0005637;nuclear inner membrane;0.00725359234919734!GO:0006891;intra-Golgi vesicle-mediated transport;0.00725359234919734!GO:0046467;membrane lipid biosynthetic process;0.00725359234919734!GO:0004518;nuclease activity;0.00726997084013765!GO:0043281;regulation of caspase activity;0.00727283484740559!GO:0048487;beta-tubulin binding;0.00753243216264319!GO:0008270;zinc ion binding;0.00790986042612284!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0079335055721618!GO:0045047;protein targeting to ER;0.0079335055721618!GO:0000139;Golgi membrane;0.00797103560656759!GO:0043488;regulation of mRNA stability;0.00802921219741494!GO:0043487;regulation of RNA stability;0.00802921219741494!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00820943554777548!GO:0016272;prefoldin complex;0.00820943554777548!GO:0030258;lipid modification;0.00830431531868253!GO:0008312;7S RNA binding;0.00894855745942998!GO:0019318;hexose metabolic process;0.00895025467504085!GO:0030663;COPI coated vesicle membrane;0.00911669685809651!GO:0030126;COPI vesicle coat;0.00911669685809651!GO:0006914;autophagy;0.00933962892952265!GO:0051087;chaperone binding;0.00959307259225861!GO:0006310;DNA recombination;0.00967874147490528!GO:0000786;nucleosome;0.00968637866801319!GO:0032318;regulation of Ras GTPase activity;0.00979814843249731!GO:0048471;perinuclear region of cytoplasm;0.00979814843249731!GO:0005996;monosaccharide metabolic process;0.0100276872919818!GO:0016023;cytoplasmic membrane-bound vesicle;0.0100731008751847!GO:0006607;NLS-bearing substrate import into nucleus;0.0103922386878006!GO:0042613;MHC class II protein complex;0.0105133031237192!GO:0031625;ubiquitin protein ligase binding;0.0105629540238061!GO:0007006;mitochondrial membrane organization and biogenesis;0.0106065715776668!GO:0046914;transition metal ion binding;0.0106109235010509!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0110992501973335!GO:0008333;endosome to lysosome transport;0.0113400190183753!GO:0051920;peroxiredoxin activity;0.0113861725284126!GO:0051329;interphase of mitotic cell cycle;0.0115478148342822!GO:0045045;secretory pathway;0.0116200075258352!GO:0006302;double-strand break repair;0.0116787924036482!GO:0030137;COPI-coated vesicle;0.0119936970239533!GO:0000209;protein polyubiquitination;0.0120475881903247!GO:0016791;phosphoric monoester hydrolase activity;0.0122038363375946!GO:0006919;caspase activation;0.0123118734708585!GO:0008624;induction of apoptosis by extracellular signals;0.0132446528566361!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0134633110991287!GO:0006643;membrane lipid metabolic process;0.0138760787527155!GO:0051325;interphase;0.0142495375604455!GO:0045792;negative regulation of cell size;0.014299552475554!GO:0046822;regulation of nucleocytoplasmic transport;0.0144615516698063!GO:0006740;NADPH regeneration;0.0149900914708181!GO:0006098;pentose-phosphate shunt;0.0149900914708181!GO:0016584;nucleosome positioning;0.0150018789840236!GO:0030118;clathrin coat;0.0150134801559953!GO:0006405;RNA export from nucleus;0.0150629734942231!GO:0031968;organelle outer membrane;0.0150683072025598!GO:0043022;ribosome binding;0.0151492140801985!GO:0006213;pyrimidine nucleoside metabolic process;0.0151495902637418!GO:0004527;exonuclease activity;0.0155070931827501!GO:0030041;actin filament polymerization;0.0155390622628597!GO:0030867;rough endoplasmic reticulum membrane;0.0155390622628597!GO:0030027;lamellipodium;0.0155390622628597!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0156075773833248!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0156075773833248!GO:0009126;purine nucleoside monophosphate metabolic process;0.0156075773833248!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0156075773833248!GO:0030176;integral to endoplasmic reticulum membrane;0.0156086651628535!GO:0030308;negative regulation of cell growth;0.0156973366637699!GO:0006506;GPI anchor biosynthetic process;0.0158907553420929!GO:0003711;transcription elongation regulator activity;0.0158907553420929!GO:0005048;signal sequence binding;0.01589506546646!GO:0048468;cell development;0.0161887478645806!GO:0030658;transport vesicle membrane;0.0162292169280315!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0163219797747975!GO:0015631;tubulin binding;0.0163365493439482!GO:0019867;outer membrane;0.0165371778000868!GO:0030880;RNA polymerase complex;0.0165371778000868!GO:0046966;thyroid hormone receptor binding;0.0167451835650153!GO:0016859;cis-trans isomerase activity;0.0167451835650153!GO:0008637;apoptotic mitochondrial changes;0.0169984778298774!GO:0000118;histone deacetylase complex;0.0173706335810893!GO:0008180;signalosome;0.0173977943896647!GO:0009161;ribonucleoside monophosphate metabolic process;0.0182359649396585!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0182359649396585!GO:0006289;nucleotide-excision repair;0.0182727295313309!GO:0048002;antigen processing and presentation of peptide antigen;0.0182727295313309!GO:0004722;protein serine/threonine phosphatase activity;0.0182873700267087!GO:0032763;regulation of mast cell cytokine production;0.0182899512084467!GO:0032762;mast cell cytokine production;0.0182899512084467!GO:0005869;dynactin complex;0.0183282334944101!GO:0046519;sphingoid metabolic process;0.0183515082756756!GO:0006595;polyamine metabolic process;0.0187188539540001!GO:0043280;positive regulation of caspase activity;0.0187807360910898!GO:0005669;transcription factor TFIID complex;0.0194412266196772!GO:0006497;protein amino acid lipidation;0.0195806396858499!GO:0009116;nucleoside metabolic process;0.0195806396858499!GO:0004177;aminopeptidase activity;0.0196318126044257!GO:0009112;nucleobase metabolic process;0.0197674928542098!GO:0044452;nucleolar part;0.0204321667098628!GO:0004185;serine carboxypeptidase activity;0.0206670224504563!GO:0006509;membrane protein ectodomain proteolysis;0.0207437265989076!GO:0033619;membrane protein proteolysis;0.0207437265989076!GO:0045926;negative regulation of growth;0.0209558814821694!GO:0006376;mRNA splice site selection;0.0210928443161662!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0210928443161662!GO:0019864;IgG binding;0.0216115266689061!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0216115266689061!GO:0010257;NADH dehydrogenase complex assembly;0.0216115266689061!GO:0033108;mitochondrial respiratory chain complex assembly;0.0216115266689061!GO:0006505;GPI anchor metabolic process;0.0218607419620058!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0219224259342617!GO:0004218;cathepsin S activity;0.021960747334366!GO:0022406;membrane docking;0.0223651207262596!GO:0048278;vesicle docking;0.0223651207262596!GO:0001816;cytokine production;0.0223651207262596!GO:0009893;positive regulation of metabolic process;0.0224800353678693!GO:0008017;microtubule binding;0.0226982037885448!GO:0003988;acetyl-CoA C-acyltransferase activity;0.022933610668928!GO:0005975;carbohydrate metabolic process;0.0229479650090532!GO:0006672;ceramide metabolic process;0.0240134723354395!GO:0006904;vesicle docking during exocytosis;0.0244354553670866!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0244540082567209!GO:0045947;negative regulation of translational initiation;0.0244540082567209!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0246903789103373!GO:0006007;glucose catabolic process;0.0252589239317217!GO:0015923;mannosidase activity;0.0253276222441187!GO:0019883;antigen processing and presentation of endogenous antigen;0.0253664541475747!GO:0031647;regulation of protein stability;0.0255685087109665!GO:0006733;oxidoreduction coenzyme metabolic process;0.0260387404434352!GO:0051098;regulation of binding;0.026263519849302!GO:0043433;negative regulation of transcription factor activity;0.0264536296402981!GO:0006839;mitochondrial transport;0.0270203567320094!GO:0006778;porphyrin metabolic process;0.027304230717973!GO:0033013;tetrapyrrole metabolic process;0.027304230717973!GO:0006897;endocytosis;0.0274417947202184!GO:0010324;membrane invagination;0.0274417947202184!GO:0008320;protein transmembrane transporter activity;0.0276040686803903!GO:0030518;steroid hormone receptor signaling pathway;0.0277946053877785!GO:0000726;non-recombinational repair;0.0277946053877785!GO:0005099;Ras GTPase activator activity;0.0278211217989531!GO:0051092;activation of NF-kappaB transcription factor;0.0283003287974841!GO:0015036;disulfide oxidoreductase activity;0.028605576929677!GO:0008287;protein serine/threonine phosphatase complex;0.0286878789346805!GO:0050811;GABA receptor binding;0.0288094969886333!GO:0019783;small conjugating protein-specific protease activity;0.0288399458281704!GO:0008538;proteasome activator activity;0.0291754460010104!GO:0006644;phospholipid metabolic process;0.0296130915081554!GO:0000049;tRNA binding;0.0298988441127472!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0298988441127472!GO:0000428;DNA-directed RNA polymerase complex;0.0298988441127472!GO:0000303;response to superoxide;0.030042529499462!GO:0022415;viral reproductive process;0.0305382290334299!GO:0008656;caspase activator activity;0.0305382290334299!GO:0005832;chaperonin-containing T-complex;0.0307848259358915!GO:0030660;Golgi-associated vesicle membrane;0.0316670910449308!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0319209316559311!GO:0007021;tubulin folding;0.0325980517838384!GO:0008139;nuclear localization sequence binding;0.0326264389500523!GO:0035258;steroid hormone receptor binding;0.0326606828432491!GO:0033367;protein localization in mast cell secretory granule;0.0329258522485141!GO:0033365;protein localization in organelle;0.0329258522485141!GO:0033371;T cell secretory granule organization and biogenesis;0.0329258522485141!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0329258522485141!GO:0033375;protease localization in T cell secretory granule;0.0329258522485141!GO:0042629;mast cell granule;0.0329258522485141!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0329258522485141!GO:0033364;mast cell secretory granule organization and biogenesis;0.0329258522485141!GO:0033380;granzyme B localization in T cell secretory granule;0.0329258522485141!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0329258522485141!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0329258522485141!GO:0033368;protease localization in mast cell secretory granule;0.0329258522485141!GO:0033366;protein localization in secretory granule;0.0329258522485141!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0329258522485141!GO:0033374;protein localization in T cell secretory granule;0.0329258522485141!GO:0015630;microtubule cytoskeleton;0.0329258522485141!GO:0008629;induction of apoptosis by intracellular signals;0.0329604000406246!GO:0030036;actin cytoskeleton organization and biogenesis;0.0331655564144436!GO:0032774;RNA biosynthetic process;0.0331873796791478!GO:0030218;erythrocyte differentiation;0.0332412796979054!GO:0006458;'de novo' protein folding;0.0335101923201872!GO:0051084;'de novo' posttranslational protein folding;0.0335101923201872!GO:0018193;peptidyl-amino acid modification;0.0335421048657687!GO:0004843;ubiquitin-specific protease activity;0.0343926763744852!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0348033750715154!GO:0060090;molecular adaptor activity;0.0348033750715154!GO:0016311;dephosphorylation;0.0352469334454266!GO:0042158;lipoprotein biosynthetic process;0.0352469334454266!GO:0016301;kinase activity;0.0353603735782708!GO:0045449;regulation of transcription;0.0353680853903849!GO:0032760;positive regulation of tumor necrosis factor production;0.0354820919417389!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0355201267554262!GO:0009119;ribonucleoside metabolic process;0.0357154571777419!GO:0004532;exoribonuclease activity;0.0358913411186916!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0358913411186916!GO:0030145;manganese ion binding;0.0362801332275784!GO:0032640;tumor necrosis factor production;0.0363309967120701!GO:0006351;transcription, DNA-dependent;0.0364410560305952!GO:0030503;regulation of cell redox homeostasis;0.0365550093794992!GO:0006013;mannose metabolic process;0.0366528041145616!GO:0006516;glycoprotein catabolic process;0.036733446687213!GO:0022884;macromolecule transmembrane transporter activity;0.0376549372131233!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0376549372131233!GO:0046983;protein dimerization activity;0.0382083565185973!GO:0000305;response to oxygen radical;0.0383931083985369!GO:0045309;protein phosphorylated amino acid binding;0.0384025213549852!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0394727484717272!GO:0050662;coenzyme binding;0.0398121871709802!GO:0051235;maintenance of localization;0.04068711273388!GO:0051287;NAD binding;0.04114127535816!GO:0042168;heme metabolic process;0.0411738381395022!GO:0000082;G1/S transition of mitotic cell cycle;0.0411738381395022!GO:0000776;kinetochore;0.0411738381395022!GO:0017091;AU-rich element binding;0.0411738381395022!GO:0050779;RNA destabilization;0.0411738381395022!GO:0000289;poly(A) tail shortening;0.0411738381395022!GO:0030833;regulation of actin filament polymerization;0.0416531022677198!GO:0000339;RNA cap binding;0.0425487765741612!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.042646399953368!GO:0043621;protein self-association;0.0426821157472718!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0427492763392363!GO:0002819;regulation of adaptive immune response;0.0427492763392363!GO:0030119;AP-type membrane coat adaptor complex;0.0431513193863205!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0435593079159127!GO:0051101;regulation of DNA binding;0.0435832603239367!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0437423579382668!GO:0047485;protein N-terminus binding;0.0441018646758899!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0442078071830217!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0443488199365551!GO:0004576;oligosaccharyl transferase activity;0.0446427858965131!GO:0002757;immune response-activating signal transduction;0.0447116028345606!GO:0005657;replication fork;0.0448169779007549!GO:0000119;mediator complex;0.0449241436170485!GO:0019752;carboxylic acid metabolic process;0.0456598322482777!GO:0042802;identical protein binding;0.0462008764311311!GO:0043300;regulation of leukocyte degranulation;0.0462008764311311!GO:0004659;prenyltransferase activity;0.0463575148523303!GO:0000096;sulfur amino acid metabolic process;0.0468900950337606!GO:0008168;methyltransferase activity;0.0470248509166412!GO:0030132;clathrin coat of coated pit;0.0470248509166412!GO:0006118;electron transport;0.0472532140453806!GO:0031901;early endosome membrane;0.0473687763300151!GO:0051223;regulation of protein transport;0.0473806031394251!GO:0001784;phosphotyrosine binding;0.0476243457176812!GO:0016605;PML body;0.048226144869695!GO:0051219;phosphoprotein binding;0.0490838332198028!GO:0000178;exosome (RNase complex);0.0491677808669804 | |||
|sample_id=11911 | |sample_id=11911 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=HMX1:2.17358459849;SPI1:2.16959058435;NANOG{mouse}:2.08612122065;IRF1,2:2.03124168708;SPIB:1.98598218255;IRF7:1.72297356184;DMAP1_NCOR{1,2}_SMARC:1.62047714669;NFIL3:1.58472095762;RFX2..5_RFXANK_RFXAP:1.537588976;ETS1,2:1.5356601693;FOXN1:1.52455313459;TLX2:1.43432368088;FOX{I1,J2}:1.42428410685;ATF5_CREB3:1.40814981476;HES1:1.37645918115;ELF1,2,4:1.34068240508;ALX1:1.27487489034;TGIF1:1.27233419514;FOX{F1,F2,J1}:1.26235639884;CREB1:1.17136593201;SREBF1,2:1.1410315722;RUNX1..3:1.08669702394;FOXO1,3,4:1.02387223826;PAX2:0.994161791481;FOXA2:0.981337230708;GLI1..3:0.874317416334;MAFB:0.854782333563;ATF4:0.781962075617;TAL1_TCF{3,4,12}:0.742842854628;ESRRA:0.686313295703;NFKB1_REL_RELA:0.66411675413;FOX{D1,D2}:0.625162673142;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.623192401262;PAX8:0.597509899134;NR6A1:0.592943807411;CRX:0.526723642902;CDX1,2,4:0.514748898301;NR5A1,2:0.499547755828;EP300:0.4771646195;ELK1,4_GABP{A,B1}:0.476547105608;ATF2:0.457012373906;FOXP3:0.452998333662;BPTF:0.411619621085;HMGA1,2:0.401300571289;POU5F1:0.363980560366;PAX4:0.305808075175;FOXP1:0.305389360452;HIF1A:0.29497643267;RFX1:0.288241035403;HLF:0.287247237851;ALX4:0.276822861847;TOPORS:0.274131306204;CEBPA,B_DDIT3:0.262348998314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.26061242531;NKX2-2,8:0.249472402739;JUN:0.23950486;NR1H4:0.208070896543;TFCP2:0.171708641091;FOXQ1:0.149514602226;ZBTB16:0.125093358267;ESR1:0.121291468053;HBP1_HMGB_SSRP1_UBTF:0.111665083255;PAX3,7:0.100165582616;FOSL2:0.0911431008124;ZNF148:0.0625633386228;EN1,2:0.0588187855357;HNF4A_NR2F1,2:0.0573132637169;NFIX:0.0533271611094;HOXA9_MEIS1:0.033903932754;MEF2{A,B,C,D}:0.030259295349;IKZF2:-0.00306040459385;TFAP4:-0.00927814591902;GATA6:-0.0142362413404;ATF6:-0.014480724345;NANOG:-0.0289221116117;OCT4_SOX2{dimer}:-0.0338920802384;EBF1:-0.0470009088671;PITX1..3:-0.0476884597469;RBPJ:-0.0589485531141;PDX1:-0.0622072526527;T:-0.0809019700316;RXRA_VDR{dimer}:-0.0946483427626;PBX1:-0.10205971528;PPARG:-0.105092891138;BACH2:-0.11439608932;POU2F1..3:-0.131106811687;FOS_FOS{B,L1}_JUN{B,D}:-0.144840882562;RORA:-0.150165792222;PRRX1,2:-0.208460143261;NFE2L2:-0.220781782862;STAT2,4,6:-0.223455990472;NFE2:-0.240505438153;AHR_ARNT_ARNT2:-0.250606190845;VSX1,2:-0.270127262888;GATA4:-0.275630341022;CUX2:-0.335457034629;MYB:-0.358019764021;SPZ1:-0.363667438146;HOX{A5,B5}:-0.36544468556;NHLH1,2:-0.378535104883;AIRE:-0.380198307662;FOXD3:-0.382220372973;SOX2:-0.393920141134;DBP:-0.396608869926;MYFfamily:-0.406436628826;ARID5B:-0.417663713776;AR:-0.421878145474;NFE2L1:-0.425969903251;POU1F1:-0.430343640689;HSF1,2:-0.441611511876;REST:-0.456897425689;GZF1:-0.471724652434;PAX1,9:-0.492373975031;SRF:-0.492729106674;MYOD1:-0.523705663941;HNF1A:-0.548555966804;HOX{A4,D4}:-0.562778364434;NKX2-3_NKX2-5:-0.576181419476;HOX{A6,A7,B6,B7}:-0.579489452908;SOX{8,9,10}:-0.584313062179;ADNP_IRX_SIX_ZHX:-0.616939498526;YY1:-0.644294015842;SOX5:-0.644308652012;BREu{core}:-0.652573014764;NFY{A,B,C}:-0.668594773581;PRDM1:-0.683531076466;STAT1,3:-0.716003182496;ZEB1:-0.721672104447;MTF1:-0.725290092274;FOXL1:-0.726020708265;ONECUT1,2:-0.772201501461;E2F1..5:-0.796118625588;NKX6-1,2:-0.80527941236;TFAP2{A,C}:-0.81209885558;LEF1_TCF7_TCF7L1,2:-0.851116329375;HAND1,2:-0.859040488445;NKX3-2:-0.892184588933;ZFP161:-0.930545180501;STAT5{A,B}:-0.935348971353;XBP1:-0.948919569282;RXR{A,B,G}:-0.970214739339;KLF4:-0.975784304132;SNAI1..3:-0.979496053413;NRF1:-0.992135148099;IKZF1:-1.04488759719;ZNF238:-1.06381755311;PAX5:-1.06886554073;LHX3,4:-1.07858992884;TP53:-1.07917670349;NKX3-1:-1.09925812321;TFAP2B:-1.10780472248;SMAD1..7,9:-1.11969387493;SP1:-1.13108256961;EGR1..3:-1.14338863887;MTE{core}:-1.14714192689;GFI1:-1.18034094628;TEF:-1.18562508092;PATZ1:-1.2033066402;GCM1,2:-1.22906200528;MZF1:-1.23632820274;MED-1{core}:-1.23702782726;PAX6:-1.24063091803;TBP:-1.24715847527;LMO2:-1.24763685657;ZNF423:-1.24983269535;GFI1B:-1.2595882729;ZIC1..3:-1.26254427512;MYBL2:-1.29675410988;TLX1..3_NFIC{dimer}:-1.30800566571;RREB1:-1.321984206;ZNF143:-1.32711101584;POU6F1:-1.33988153085;ZBTB6:-1.36484827666;TFDP1:-1.36629089407;HIC1:-1.39838671061;GTF2I:-1.39861830029;CDC5L:-1.39980562472;UFEwm:-1.45007689495;NKX2-1,4:-1.46273545419;NFATC1..3:-1.48968947668;EVI1:-1.49292331429;TEAD1:-1.52985165404;XCPE1{core}:-1.57140626629;MAZ:-1.57170027642;ZNF384:-1.61881984146;FOXM1:-1.64144279352;bHLH_family:-1.66409599212;NR3C1:-1.66706466589;GTF2A1,2:-1.83003327817;SOX17:-1.93983251086;TBX4,5:-1.95201806425;POU3F1..4:-2.28631157079 | |top_motifs=HMX1:2.17358459849;SPI1:2.16959058435;NANOG{mouse}:2.08612122065;IRF1,2:2.03124168708;SPIB:1.98598218255;IRF7:1.72297356184;DMAP1_NCOR{1,2}_SMARC:1.62047714669;NFIL3:1.58472095762;RFX2..5_RFXANK_RFXAP:1.537588976;ETS1,2:1.5356601693;FOXN1:1.52455313459;TLX2:1.43432368088;FOX{I1,J2}:1.42428410685;ATF5_CREB3:1.40814981476;HES1:1.37645918115;ELF1,2,4:1.34068240508;ALX1:1.27487489034;TGIF1:1.27233419514;FOX{F1,F2,J1}:1.26235639884;CREB1:1.17136593201;SREBF1,2:1.1410315722;RUNX1..3:1.08669702394;FOXO1,3,4:1.02387223826;PAX2:0.994161791481;FOXA2:0.981337230708;GLI1..3:0.874317416334;MAFB:0.854782333563;ATF4:0.781962075617;TAL1_TCF{3,4,12}:0.742842854628;ESRRA:0.686313295703;NFKB1_REL_RELA:0.66411675413;FOX{D1,D2}:0.625162673142;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.623192401262;PAX8:0.597509899134;NR6A1:0.592943807411;CRX:0.526723642902;CDX1,2,4:0.514748898301;NR5A1,2:0.499547755828;EP300:0.4771646195;ELK1,4_GABP{A,B1}:0.476547105608;ATF2:0.457012373906;FOXP3:0.452998333662;BPTF:0.411619621085;HMGA1,2:0.401300571289;POU5F1:0.363980560366;PAX4:0.305808075175;FOXP1:0.305389360452;HIF1A:0.29497643267;RFX1:0.288241035403;HLF:0.287247237851;ALX4:0.276822861847;TOPORS:0.274131306204;CEBPA,B_DDIT3:0.262348998314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.26061242531;NKX2-2,8:0.249472402739;JUN:0.23950486;NR1H4:0.208070896543;TFCP2:0.171708641091;FOXQ1:0.149514602226;ZBTB16:0.125093358267;ESR1:0.121291468053;HBP1_HMGB_SSRP1_UBTF:0.111665083255;PAX3,7:0.100165582616;FOSL2:0.0911431008124;ZNF148:0.0625633386228;EN1,2:0.0588187855357;HNF4A_NR2F1,2:0.0573132637169;NFIX:0.0533271611094;HOXA9_MEIS1:0.033903932754;MEF2{A,B,C,D}:0.030259295349;IKZF2:-0.00306040459385;TFAP4:-0.00927814591902;GATA6:-0.0142362413404;ATF6:-0.014480724345;NANOG:-0.0289221116117;OCT4_SOX2{dimer}:-0.0338920802384;EBF1:-0.0470009088671;PITX1..3:-0.0476884597469;RBPJ:-0.0589485531141;PDX1:-0.0622072526527;T:-0.0809019700316;RXRA_VDR{dimer}:-0.0946483427626;PBX1:-0.10205971528;PPARG:-0.105092891138;BACH2:-0.11439608932;POU2F1..3:-0.131106811687;FOS_FOS{B,L1}_JUN{B,D}:-0.144840882562;RORA:-0.150165792222;PRRX1,2:-0.208460143261;NFE2L2:-0.220781782862;STAT2,4,6:-0.223455990472;NFE2:-0.240505438153;AHR_ARNT_ARNT2:-0.250606190845;VSX1,2:-0.270127262888;GATA4:-0.275630341022;CUX2:-0.335457034629;MYB:-0.358019764021;SPZ1:-0.363667438146;HOX{A5,B5}:-0.36544468556;NHLH1,2:-0.378535104883;AIRE:-0.380198307662;FOXD3:-0.382220372973;SOX2:-0.393920141134;DBP:-0.396608869926;MYFfamily:-0.406436628826;ARID5B:-0.417663713776;AR:-0.421878145474;NFE2L1:-0.425969903251;POU1F1:-0.430343640689;HSF1,2:-0.441611511876;REST:-0.456897425689;GZF1:-0.471724652434;PAX1,9:-0.492373975031;SRF:-0.492729106674;MYOD1:-0.523705663941;HNF1A:-0.548555966804;HOX{A4,D4}:-0.562778364434;NKX2-3_NKX2-5:-0.576181419476;HOX{A6,A7,B6,B7}:-0.579489452908;SOX{8,9,10}:-0.584313062179;ADNP_IRX_SIX_ZHX:-0.616939498526;YY1:-0.644294015842;SOX5:-0.644308652012;BREu{core}:-0.652573014764;NFY{A,B,C}:-0.668594773581;PRDM1:-0.683531076466;STAT1,3:-0.716003182496;ZEB1:-0.721672104447;MTF1:-0.725290092274;FOXL1:-0.726020708265;ONECUT1,2:-0.772201501461;E2F1..5:-0.796118625588;NKX6-1,2:-0.80527941236;TFAP2{A,C}:-0.81209885558;LEF1_TCF7_TCF7L1,2:-0.851116329375;HAND1,2:-0.859040488445;NKX3-2:-0.892184588933;ZFP161:-0.930545180501;STAT5{A,B}:-0.935348971353;XBP1:-0.948919569282;RXR{A,B,G}:-0.970214739339;KLF4:-0.975784304132;SNAI1..3:-0.979496053413;NRF1:-0.992135148099;IKZF1:-1.04488759719;ZNF238:-1.06381755311;PAX5:-1.06886554073;LHX3,4:-1.07858992884;TP53:-1.07917670349;NKX3-1:-1.09925812321;TFAP2B:-1.10780472248;SMAD1..7,9:-1.11969387493;SP1:-1.13108256961;EGR1..3:-1.14338863887;MTE{core}:-1.14714192689;GFI1:-1.18034094628;TEF:-1.18562508092;PATZ1:-1.2033066402;GCM1,2:-1.22906200528;MZF1:-1.23632820274;MED-1{core}:-1.23702782726;PAX6:-1.24063091803;TBP:-1.24715847527;LMO2:-1.24763685657;ZNF423:-1.24983269535;GFI1B:-1.2595882729;ZIC1..3:-1.26254427512;MYBL2:-1.29675410988;TLX1..3_NFIC{dimer}:-1.30800566571;RREB1:-1.321984206;ZNF143:-1.32711101584;POU6F1:-1.33988153085;ZBTB6:-1.36484827666;TFDP1:-1.36629089407;HIC1:-1.39838671061;GTF2I:-1.39861830029;CDC5L:-1.39980562472;UFEwm:-1.45007689495;NKX2-1,4:-1.46273545419;NFATC1..3:-1.48968947668;EVI1:-1.49292331429;TEAD1:-1.52985165404;XCPE1{core}:-1.57140626629;MAZ:-1.57170027642;ZNF384:-1.61881984146;FOXM1:-1.64144279352;bHLH_family:-1.66409599212;NR3C1:-1.66706466589;GTF2A1,2:-1.83003327817;SOX17:-1.93983251086;TBX4,5:-1.95201806425;POU3F1..4:-2.28631157079 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11911-125G3;search_select_hide=table117:FF:11911-125G3 | |||
}} | }} | ||
Latest revision as of 18:28, 4 June 2020
| Name: | CD14-CD16+ Monocytes, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13548 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13548
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13548
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0869 |
| 10 | 10 | 0.0254 |
| 100 | 100 | 0.787 |
| 101 | 101 | 0.323 |
| 102 | 102 | 0.452 |
| 103 | 103 | 0.312 |
| 104 | 104 | 0.567 |
| 105 | 105 | 0.351 |
| 106 | 106 | 0.0194 |
| 107 | 107 | 0.815 |
| 108 | 108 | 0.861 |
| 109 | 109 | 0.0306 |
| 11 | 11 | 0.157 |
| 110 | 110 | 0.231 |
| 111 | 111 | 0.0324 |
| 112 | 112 | 0.233 |
| 113 | 113 | 0.387 |
| 114 | 114 | 0.00666 |
| 115 | 115 | 0.336 |
| 116 | 116 | 0.946 |
| 117 | 117 | 0.0192 |
| 118 | 118 | 0.123 |
| 119 | 119 | 0.275 |
| 12 | 12 | 0.296 |
| 120 | 120 | 0.859 |
| 121 | 121 | 0.963 |
| 122 | 122 | 0.56 |
| 123 | 123 | 2.30124e-4 |
| 124 | 124 | 0.349 |
| 125 | 125 | 0.0575 |
| 126 | 126 | 0.158 |
| 127 | 127 | 0.351 |
| 128 | 128 | 0.0977 |
| 129 | 129 | 0.982 |
| 13 | 13 | 0.125 |
| 130 | 130 | 0.275 |
| 131 | 131 | 0.878 |
| 132 | 132 | 0.0416 |
| 133 | 133 | 0.164 |
| 134 | 134 | 0.716 |
| 135 | 135 | 0.12 |
| 136 | 136 | 0.744 |
| 137 | 137 | 1.07535e-4 |
| 138 | 138 | 0.281 |
| 139 | 139 | 0.0129 |
| 14 | 14 | 0.393 |
| 140 | 140 | 0.212 |
| 141 | 141 | 0.513 |
| 142 | 142 | 0.934 |
| 143 | 143 | 0.158 |
| 144 | 144 | 0.979 |
| 145 | 145 | 0.287 |
| 146 | 146 | 0.994 |
| 147 | 147 | 0.428 |
| 148 | 148 | 0.0576 |
| 149 | 149 | 0.73 |
| 15 | 15 | 0.135 |
| 150 | 150 | 0.525 |
| 151 | 151 | 0.259 |
| 152 | 152 | 0.343 |
| 153 | 153 | 0.609 |
| 154 | 154 | 0.783 |
| 155 | 155 | 0.0743 |
| 156 | 156 | 0.861 |
| 157 | 157 | 0.738 |
| 158 | 158 | 0.151 |
| 159 | 159 | 0.223 |
| 16 | 16 | 0.482 |
| 160 | 160 | 0.5 |
| 161 | 161 | 0.575 |
| 162 | 162 | 0.647 |
| 163 | 163 | 0.265 |
| 164 | 164 | 0.113 |
| 165 | 165 | 0.126 |
| 166 | 166 | 0.477 |
| 167 | 167 | 0.048 |
| 168 | 168 | 0.554 |
| 169 | 169 | 0.0142 |
| 17 | 17 | 0.367 |
| 18 | 18 | 0.215 |
| 19 | 19 | 0.289 |
| 2 | 2 | 0.955 |
| 20 | 20 | 0.454 |
| 21 | 21 | 0.419 |
| 22 | 22 | 0.301 |
| 23 | 23 | 0.327 |
| 24 | 24 | 0.301 |
| 25 | 25 | 0.1 |
| 26 | 26 | 0.0656 |
| 27 | 27 | 0.55 |
| 28 | 28 | 0.478 |
| 29 | 29 | 0.08 |
| 3 | 3 | 0.0837 |
| 30 | 30 | 0.347 |
| 31 | 31 | 0.604 |
| 32 | 32 | 0.618 |
| 33 | 33 | 0.176 |
| 34 | 34 | 0.593 |
| 35 | 35 | 0.159 |
| 36 | 36 | 0.027 |
| 37 | 37 | 0.0547 |
| 38 | 38 | 0.471 |
| 39 | 39 | 0.737 |
| 4 | 4 | 0.918 |
| 40 | 40 | 0.146 |
| 41 | 41 | 0.0697 |
| 42 | 42 | 0.275 |
| 43 | 43 | 0.0869 |
| 44 | 44 | 0.617 |
| 45 | 45 | 0.943 |
| 46 | 46 | 0.139 |
| 47 | 47 | 0.331 |
| 48 | 48 | 0.353 |
| 49 | 49 | 0.0867 |
| 5 | 5 | 0.108 |
| 50 | 50 | 0.952 |
| 51 | 51 | 0.406 |
| 52 | 52 | 0.335 |
| 53 | 53 | 0.262 |
| 54 | 54 | 0.432 |
| 55 | 55 | 0.305 |
| 56 | 56 | 0.792 |
| 57 | 57 | 0.761 |
| 58 | 58 | 0.0289 |
| 59 | 59 | 0.148 |
| 6 | 6 | 0.782 |
| 60 | 60 | 0.0453 |
| 61 | 61 | 0.233 |
| 62 | 62 | 0.00807 |
| 63 | 63 | 0.513 |
| 64 | 64 | 0.343 |
| 65 | 65 | 0.37 |
| 66 | 66 | 0.367 |
| 67 | 67 | 0.249 |
| 68 | 68 | 0.825 |
| 69 | 69 | 0.608 |
| 7 | 7 | 0.136 |
| 70 | 70 | 0.0207 |
| 71 | 71 | 0.0456 |
| 72 | 72 | 0.244 |
| 73 | 73 | 0.137 |
| 74 | 74 | 0.385 |
| 75 | 75 | 0.032 |
| 76 | 76 | 0.214 |
| 77 | 77 | 0.628 |
| 78 | 78 | 0.27 |
| 79 | 79 | 0.267 |
| 8 | 8 | 0.282 |
| 80 | 80 | 0.315 |
| 81 | 81 | 0.182 |
| 82 | 82 | 0.146 |
| 83 | 83 | 0.746 |
| 84 | 84 | 0.696 |
| 85 | 85 | 0.0549 |
| 86 | 86 | 0.087 |
| 87 | 87 | 0.201 |
| 88 | 88 | 0.515 |
| 89 | 89 | 0.751 |
| 9 | 9 | 0.338 |
| 90 | 90 | 0.0542 |
| 91 | 91 | 0.46 |
| 92 | 92 | 0.482 |
| 93 | 93 | 0.444 |
| 94 | 94 | 0.0209 |
| 95 | 95 | 0.0637 |
| 96 | 96 | 0.281 |
| 97 | 97 | 0.982 |
| 98 | 98 | 0.104 |
| 99 | 99 | 0.0737 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13548
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011100 human CD14-CD16-positive Monocytes sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)
