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{{f5samples
{{f5samples
|id=FF:12239-129G7
|DRA_sample_Accession=CAGE@SAMD00004737
|name=chorionic membrane cells, donor2
|accession_numbers=CAGE;DRX008541;DRR009413;DRZ000838;DRZ002223;DRZ012188;DRZ013573
|sample_id=12239
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000476,UBERON:0000478,UBERON:0000158,UBERON:0003124,UBERON:0000920
|rna_tube_id=129G7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002541
|rna_box=129
|rna_position=G7
|sample_cell_lot=C 7/14
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=chorion
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.71
|rna_od260/280=2.02
|sample_cell_type=unclassifiable
|sample_cell_line=
|sample_collaboration=Hiroo Toyoda (Tokyo University of Pharm and life sciences)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=6.3558
|rna_concentration=0.2354
|sample_note=Jan 20 librarian
|profile_hcage=CNhs12506,LSID918,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002541
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000158,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000476,UBERON:0000478,UBERON:0000479,UBERON:0000480,UBERON:0000920,UBERON:0001062,UBERON:0002384,UBERON:0003124,UBERON:0004923,UBERON:0005631
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000038
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.94!86.19!HAND2;;chr1:6479968..6479986,-!p1@HES2!1.82!64.39!HES2;;chr6:53013620..53013644,-!p1@GCM1!1.74!53.49!GCM1;;chr10:8096772..8096787,+!p2@GATA3!1.69!56.42!GATA3;;chr9:77112244..77112262,+!p1@RORB!1.62!45.07!RORB;;chr10:8096631..8096660,+!p1@GATA3!1.51!38.10!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.46!27.57!PEG3;;chrX:70316005..70316034,+!p2@FOXO4!1.43!46.44!FOXO4;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.78!TFAP2C;;chr2:46524897..46524911,+!p2@EPAS1!1.41!67.87!EPAS1;;chr7:27224842..27224872,-!p1@HOXA11!1.35!21.16!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.33!20.33!HOXA11;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.86!TCF12;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.77!GRHL2;;chr3:138665937..138665968,-!p1@FOXL2!1.27!17.59!FOXL2;;chr15:96869114..96869160,+!p11@NR2F2!1.26!23.08!NR2F2;;chr3:128212033..128212051,-!p1@GATA2!1.25!16.95!GATA2;;chr15:96869255..96869291,+!p6@NR2F2!1.24!29.40!NR2F2;;chrX:70316101..70316112,+!p5@FOXO4!1.22!15.57!FOXO4;;chr2:176969228..176969260,+!p1@HOXD11!1.21!15.30!HOXD11;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.57!CREB3L1;;chrX:70316072..70316085,+!p4@FOXO4!1.20!14.84!FOXO4;;chr1:209979467..209979494,-!p1@IRF6!1.19!16.40!IRF6;;chr16:85932760..85932775,+!p1@IRF8!1.19!14.56!IRF8;;chr8:135708787..135708805,-!p2@ZFAT!1.17!13.65!ZFAT;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.48!TFAP2A;;chr1:170632285..170632309,+!p1@PRRX1!1.14!14.38!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.13!16.85!PRRX1;;chr15:96869165..96869183,+!p20@NR2F2!1.13!12.55!NR2F2;;chr3:12330560..12330579,+!p1@PPARG!1.11!13.83!PPARG;;chr20:6748325..6748352,+!p1@BMP2!1.10!16.76!BMP2;;chr6:106534192..106534224,+!p1@PRDM1!1.09!32.15!PRDM1;;chr4:174451350..174451363,-!p3@HAND2!1.08!10.99!HAND2;;chr3:141719209..141719215,-!p10@TFDP2!1.05!10.26!TFDP2;;chr2:239756671..239756732,+!p1@TWIST2!1.04!32.24!TWIST2;;chr3:138665760..138665772,-!p3@FOXL2!1.04!9.98!FOXL2;;chr12:19556998..19557013,+!p6@AEBP2!1.04!9.89!AEBP2;;chr13:73633131..73633149,+!p1@KLF5!1.03!103.96!KLF5;;chr6:10415484..10415508,-!p3@TFAP2A!1.02!9.43!TFAP2A;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.71!GATA2;;chr4:174450089..174450153,-!p2@HAND2!1.00!8.98!HAND2;;chr6:106534230..106534254,+!p2@PRDM1!0.97!21.25!PRDM1;;chr3:189507432..189507459,+!p1@TP63!0.97!8.43!TP63;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.24!HOXA3;;chr5:174151612..174151633,+!p2@MSX2!0.96!8.06!MSX2;;chr3:138665774..138665786,-!p5@FOXL2!0.96!8.06!FOXL2;;chr19:48773337..48773339,+!p2@ZNF114!0.96!8.06!ZNF114;;chr5:174151553..174151610,+!p1@MSX2!0.95!13.46!MSX2;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.70!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!0.95!7.97!IRX2;;chrX:56258844..56258882,+!p1@KLF8!0.94!10.90!KLF8;;chr7:27205136..27205164,-!p1@HOXA9!0.94!7.69!HOXA9;;chr2:176969179..176969226,+!p2@HOXD11!0.94!7.69!HOXD11;;chr5:92918919..92918942,+!p1@NR2F1!0.93!34.44!NR2F1;;chr15:96869222..96869251,+!p18@NR2F2!0.92!8.70!NR2F2;;chr8:102504690..102504704,+!p3@GRHL2!0.92!7.24!GRHL2;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.24!PRRX1;;chr3:141151009..141151033,+!p10@ZBTB38!0.91!7.14!ZBTB38;;chr11:12696102..12696113,+!p5@TEAD1!0.91!7.14!TEAD1;;chr3:141150883..141150961,+!p6@ZBTB38!0.91!7.05!ZBTB38;;chr19:17356189..17356221,-!p2@NR2F6!0.87!10.81!NR2F6;;chr6:53013605..53013616,-!p2@GCM1!0.87!6.41!GCM1;;chr8:102504979..102505010,+!p2@GRHL2!0.87!6.41!GRHL2;;chr10:8095593..8095625,+!p3@GATA3!0.86!7.51!GATA3;;chr12:19556960..19556982,+!p10@AEBP2!0.86!6.32!AEBP2;;chr1:201979743..201979762,+!p1@ELF3!0.86!6.32!ELF3;;chr12:115121962..115121987,-!p1@TBX3!0.85!53.86!TBX3;;chr8:99956662..99956684,+!p1@OSR2!0.85!9.62!OSR2;;chr15:96869292..96869320,+!p15@NR2F2!0.85!8.98!NR2F2;;chrX:56258900..56258917,+!p4@KLF8!0.85!6.14!KLF8;;chr7:44143925..44143970,+!p1@AEBP1!0.84!143.08!AEBP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.84!10.17!TFAP2A;;chr19:58400344..58400364,-!p2@ZNF814!0.84!8.79!ZNF814;;chr7:27213893..27213954,-!p1@HOXA10!0.84!5.86!HOXA10;;chr2:239756739..239756755,+!p2@TWIST2!0.83!10.26!TWIST2;;chr2:16080659..16080685,+!p1@MYCN!0.83!5.77!MYCN;;chr15:96869206..96869220,+!p21@NR2F2!0.83!5.77!NR2F2;;chr11:32457075..32457095,-!p1@WT1!0.83!5.77!WT1;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.47!HIC1;;chr19:53496768..53496799,-!p1@ZNF702P!0.82!9.07!ZNF702P;;chr5:92919100..92919135,+!p3@NR2F1!0.82!6.87!NR2F1;;chr3:114343039..114343085,-!p8@ZBTB20!0.81!5.40!ZBTB20;;chr17:48072574..48072597,-!p1@DLX3!0.81!5.40!DLX3;;chr5:139492456..139492489,+!p7@PURA!0.80!5.31!PURA;;chr6:10419768..10419819,-!p6@TFAP2A!0.80!5.31!TFAP2A;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.69!GATA6;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.13!EMX2;;chr1:204042233..204042249,+!p1@SOX13!0.78!34.44!SOX13;;chr17:1959369..1959388,+!p2@HIC1!0.78!14.11!HIC1;;chrX:66763856..66763896,+!p1@AR!0.78!7.42!AR;;chr7:1577899..1577943,+!p3@MAFK!0.77!4.85!MAFK;;chr11:34642612..34642646,+!p1@EHF!0.77!4.85!EHF;;chr2:46612891..46612907,+!p10@EPAS1!0.77!4.85!EPAS1;;chr3:141121847..141121868,+!p5@ZBTB38!0.76!7.60!ZBTB38;;chr10:8097321..8097348,+!p4@GATA3!0.76!4.76!GATA3;;chr11:65554528..65554546,+!p1@OVOL1!0.76!4.76!OVOL1;;chr10:63809106..63809127,+!p1@ARID5B!0.75!68.88!ARID5B;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.39!TBX2;;chr11:12696071..12696086,+!p3@TEAD1!0.75!6.23!TEAD1;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.58!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.74!4.95!NR2F1;;chr10:8100691..8100732,+!p5@GATA3!0.74!4.49!GATA3;;chr6:21593973..21593988,+!p1@SOX4!0.73!176.42!SOX4;;chr7:44143978..44143989,+!p2@AEBP1!0.73!8.61!AEBP1;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.06!EPAS1;;chr3:138665969..138665993,-!p2@FOXL2!0.73!4.40!FOXL2;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.36!NFE2L3;;chr7:96654133..96654150,-!p1@DLX5!0.72!4.21!DLX5;;chr12:80084303..80084332,-!p1@PAWR!0.71!27.20!PAWR;;chr11:46299539..46299620,+!p2@CREB3L1!0.71!7.42!CREB3L1;;chr15:96876966..96877017,+!p12@NR2F2!0.71!6.23!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!0.70!8.24!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.70!4.03!ZNF668;;chr12:80084279..80084293,-!p8@PAWR!0.69!6.87!PAWR;;chr17:41739283..41739297,-!p1@MEOX1!0.69!3.94!MEOX1;;chr1:201979703..201979721,+!p2@ELF3!0.69!3.94!ELF3;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.94!HOXA9;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.85!SOX15;;chr2:176973498..176973524,+!p1@HOXD10!0.69!3.85!HOXD10;;chr18:72922743..72922761,+!p3@TSHZ1!0.68!13.83!TSHZ1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.67!40.76!ZNF595;;chr19:45908292..45908374,-!p1@PPP1R13L!0.67!37.92!PPP1R13L;;chr10:51572408..51572454,+!p3@NCOA4!0.67!24.82!NCOA4;;chr18:52989031..52989079,-!p2@TCF4!0.67!9.53!TCF4;;chr3:138665702..138665729,-!p7@FOXL2!0.67!3.66!FOXL2;;chr2:177001290..177001315,+!p1@HOXD3!0.66!3.57!HOXD3;;chr6:21594845..21594908,+!p6@SOX4!0.65!5.95!SOX4;;chr17:59477275..59477286,+!p3@TBX2!0.65!4.85!TBX2;;chrY:2803415..2803468,+!p1@ZFY!0.65!3.48!ZFY;;chr6:21597765..21597779,+!p2@SOX4!0.64!32.24!SOX4;;chr1:203764633..203764674,+!p2@ZC3H11A!0.64!5.77!ZC3H11A;;chr1:170632250..170632277,+!p7@PRRX1!0.64!3.39!PRRX1;;chr3:69915385..69915438,+!p3@MITF!0.64!3.39!MITF;;chrX:70319128..70319142,+!p3@FOXO4!0.64!3.39!FOXO4;;chr3:111314186..111314204,-!p1@ZBED2!0.63!3.30!ZBED2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.63!3.30!HOXC5;;chr11:47400078..47400106,-!p1@SPI1!0.62!3.21!SPI1;;chr2:176969097..176969109,+!p3@HOXD11!0.62!3.21!HOXD11;;chr2:176981499..176981522,+!p2@HOXD10!0.62!3.21!HOXD10;;chr20:18038521..18038571,-!p1@OVOL2!0.61!3.11!OVOL2;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.11!SALL1;;chr5:2751785..2751808,-!p2@IRX2!0.61!3.11!IRX2;;chr6:29648890..29648944,-!p1@ZFP57!0.61!3.11!ZFP57;;chr19:926055..926068,+!p2@ARID3A!0.60!7.33!ARID3A;;chr19:53324884..53324886,-!p1@ZNF28!0.60!4.49!ZNF28;;chr7:44143997..44144008,+!p3@AEBP1!0.60!4.03!AEBP1;;chr2:176994408..176994492,+!p1@HOXD8!0.60!3.02!HOXD8;;chr12:80085061..80085119,-!p6@PAWR!0.59!5.04!PAWR;;chr10:114889016..114889037,+!p15@TCF7L2!0.59!2.93!TCF7L2;;chr10:114889045..114889074,+!p12@TCF7L2!0.59!2.93!TCF7L2;;chr10:119302645..119302712,+!p3@EMX2!0.59!2.93!EMX2;;chr2:176971685..176971700,+!p6@HOXD11!0.59!2.93!HOXD11;;chr15:96873921..96873946,+!p1@NR2F2!0.58!96.64!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.58!19.05!ARID5B;;chr3:138665790..138665809,-!p4@FOXL2!0.58!2.84!FOXL2;;chr1:170632115..170632136,+!p9@PRRX1!0.58!2.84!PRRX1;;chr19:20278043..20278054,+!p2@ZNF486!0.58!2.84!ZNF486;;chr2:66662281..66662308,+!p1@MEIS1!0.57!11.08!MEIS1;;chr17:38498594..38498661,+!p2@RARA!0.57!10.72!RARA;;chr16:67881588..67881612,-!p2@CENPT!0.57!3.94!CENPT;;chr19:45260775..45260838,+!p5@BCL3!0.57!3.76!BCL3;;chr22:21771656..21771662,+!p1@HIC2!0.57!2.75!HIC2;;chr15:80843484..80843499,+!p5@ARNT2!0.57!2.75!ARNT2;;chr9:77112225..77112238,+!p2@RORB!0.57!2.75!RORB;;chr2:46524537..46524553,+!p1@EPAS1!0.56!328.65!EPAS1;;chr15:96873984..96873999,+!p3@NR2F2!0.56!23.91!NR2F2;;chr15:57511589..57511608,+!p4@TCF12!0.56!2.66!TCF12;;chr8:49833978..49833996,-!p1@SNAI2!0.55!66.04!SNAI2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.55!32.15!GLIS2;;chr12:80084737..80084763,-!p3@PAWR!0.55!11.54!PAWR;;chr17:20492136..20492165,+!p1@MEIS3P2!0.55!4.40!MEIS3P2;;chr18:56531584..56531646,+!p4@ZNF532!0.55!3.66!ZNF532;;chr2:10091815..10091864,+!p1@GRHL1!0.55!3.66!GRHL1;;chr12:54785054..54785072,-!p4@ZNF385A!0.55!3.02!ZNF385A;;chr7:96654026..96654061,-!p2@DLX5!0.55!2.56!DLX5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.55!2.56!RUNX1T1;;chr1:209979411..209979433,-!p2@IRF6!0.55!2.56!IRF6;;chr13:41240717..41240735,-!p2@FOXO1!0.54!21.16!FOXO1;;chr3:69788576..69788648,+!p1@MITF!0.54!16.21!MITF;;chr19:926001..926046,+!p1@ARID3A!0.54!10.53!ARID3A;;chr14:24837368..24837401,+!p1@NFATC4!0.54!6.87!NFATC4;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.93!TFAP2A;;chr5:92919375..92919438,+!p6@NR2F1!0.54!2.75!NR2F1;;chr7:150102756..150102772,+!p5@ZNF775!0.54!2.47!ZNF775;;chr11:65686732..65686756,+!p2@DRAP1!0.53!12.55!DRAP1;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.69!PAWR;;chr10:63809134..63809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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002541;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
|has_quality=
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.32854253117288e-212!GO:0005737;cytoplasm;2.84470559214795e-185!GO:0043226;organelle;2.74367384884025e-162!GO:0043229;intracellular organelle;7.50843284466875e-162!GO:0043231;intracellular membrane-bound organelle;5.67915254727512e-158!GO:0043227;membrane-bound organelle;6.83244756730071e-158!GO:0044444;cytoplasmic part;2.26306949698245e-125!GO:0044422;organelle part;6.32129403468395e-120!GO:0044446;intracellular organelle part;3.0350271112009e-118!GO:0005515;protein binding;2.7428894706444e-98!GO:0032991;macromolecular complex;7.98300001085544e-86!GO:0043170;macromolecule metabolic process;1.36200338317003e-73!GO:0030529;ribonucleoprotein complex;2.01343173381861e-73!GO:0044238;primary metabolic process;2.35279525042669e-73!GO:0044237;cellular metabolic process;2.11854827128157e-71!GO:0043233;organelle lumen;2.55794203951704e-57!GO:0031974;membrane-enclosed lumen;2.55794203951704e-57!GO:0003723;RNA binding;5.16223533804164e-57!GO:0005634;nucleus;4.59853360710971e-56!GO:0019538;protein metabolic process;5.23322679310593e-56!GO:0044428;nuclear part;1.64147759050872e-54!GO:0016043;cellular component organization and biogenesis;2.03908166096748e-52!GO:0005739;mitochondrion;5.06095756879087e-49!GO:0044260;cellular macromolecule metabolic process;9.5390543552469e-49!GO:0044267;cellular protein metabolic process;4.33669945579241e-48!GO:0031090;organelle membrane;7.46464186669825e-47!GO:0015031;protein transport;9.41707938161563e-47!GO:0033036;macromolecule localization;1.34902585723219e-46!GO:0005840;ribosome;6.25500729806194e-45!GO:0043234;protein complex;5.15033542244787e-44!GO:0045184;establishment of protein localization;7.7792671996337e-44!GO:0008104;protein localization;1.55356139416144e-43!GO:0006412;translation;1.56386998034121e-43!GO:0003735;structural constituent of ribosome;2.46069280970597e-39!GO:0043283;biopolymer metabolic process;1.29655161029389e-37!GO:0046907;intracellular transport;5.95169996768487e-36!GO:0006396;RNA processing;8.03260336051912e-36!GO:0005829;cytosol;1.5178377405684e-35!GO:0009059;macromolecule biosynthetic process;7.57298127385773e-35!GO:0033279;ribosomal subunit;1.53931241325278e-34!GO:0031981;nuclear lumen;1.60393136680753e-34!GO:0044429;mitochondrial part;5.84608427738378e-34!GO:0065003;macromolecular complex assembly;1.08388223005081e-33!GO:0031967;organelle envelope;6.23701354253231e-33!GO:0031975;envelope;1.56724769982762e-32!GO:0006886;intracellular protein transport;2.80738479843955e-31!GO:0009058;biosynthetic process;3.11145356886813e-31!GO:0022607;cellular component assembly;3.33128649359885e-31!GO:0016071;mRNA metabolic process;6.48454808904084e-31!GO:0008380;RNA splicing;2.09627014105364e-30!GO:0006996;organelle organization and biogenesis;4.77920983537449e-30!GO:0010467;gene expression;6.73743711700534e-30!GO:0044249;cellular biosynthetic process;4.27458210984474e-29!GO:0043228;non-membrane-bound organelle;1.84003755591926e-28!GO:0043232;intracellular non-membrane-bound organelle;1.84003755591926e-28!GO:0006397;mRNA processing;9.11218555926475e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.41178948351363e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.00316133200961e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.53492941294821e-25!GO:0005740;mitochondrial envelope;3.94879223874977e-24!GO:0051649;establishment of cellular localization;6.47039902771613e-24!GO:0051641;cellular localization;6.60519908821729e-24!GO:0031966;mitochondrial membrane;9.35895183067817e-23!GO:0005681;spliceosome;7.18217575093004e-22!GO:0005654;nucleoplasm;1.1319926139915e-21!GO:0044445;cytosolic part;1.32353038328376e-21!GO:0019866;organelle inner membrane;1.54332915148336e-21!GO:0005783;endoplasmic reticulum;1.5745241097857e-21!GO:0012505;endomembrane system;7.20443374880277e-21!GO:0006119;oxidative phosphorylation;2.17231190664817e-20!GO:0005743;mitochondrial inner membrane;3.2086241436851e-20!GO:0043285;biopolymer catabolic process;4.6674803029409e-20!GO:0006259;DNA metabolic process;1.51041728637004e-19!GO:0006457;protein folding;1.77626717334966e-19!GO:0048770;pigment granule;6.09060686932989e-19!GO:0042470;melanosome;6.09060686932989e-19!GO:0005794;Golgi apparatus;7.09127303368214e-19!GO:0030163;protein catabolic process;2.41740678006157e-18!GO:0015935;small ribosomal subunit;2.41740678006157e-18!GO:0007049;cell cycle;4.04698247347966e-18!GO:0044455;mitochondrial membrane part;5.06190441942002e-18!GO:0044451;nucleoplasm part;9.5609280738544e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.36920738095307e-17!GO:0022618;protein-RNA complex assembly;1.66925137680222e-17!GO:0019941;modification-dependent protein catabolic process;2.777671461958e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.777671461958e-17!GO:0016462;pyrophosphatase activity;3.16122060538549e-17!GO:0008134;transcription factor binding;3.18021487427549e-17!GO:0015934;large ribosomal subunit;3.20076298008336e-17!GO:0009057;macromolecule catabolic process;4.14282531392357e-17!GO:0044257;cellular protein catabolic process;4.18671547431369e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.43035605546115e-17!GO:0006511;ubiquitin-dependent protein catabolic process;5.98406242788499e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;6.35989061353622e-17!GO:0044432;endoplasmic reticulum part;7.17702768416957e-17!GO:0006512;ubiquitin cycle;8.08004214105044e-17!GO:0017111;nucleoside-triphosphatase activity;9.95184354837777e-17!GO:0044265;cellular macromolecule catabolic process;2.62249470185112e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.58401926496347e-16!GO:0012501;programmed cell death;2.13439476713136e-15!GO:0048193;Golgi vesicle transport;4.28943617799898e-15!GO:0006915;apoptosis;5.08708500545139e-15!GO:0005746;mitochondrial respiratory chain;5.55694840665578e-15!GO:0016192;vesicle-mediated transport;5.69149536756173e-15!GO:0000166;nucleotide binding;6.2405221513501e-15!GO:0016874;ligase activity;6.55393388829381e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.78037884816216e-15!GO:0006605;protein targeting;1.06600417783307e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.20386352686448e-14!GO:0043412;biopolymer modification;3.23835251526504e-14!GO:0008219;cell death;1.06230987248843e-13!GO:0016265;death;1.06230987248843e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.25335082780936e-13!GO:0003954;NADH dehydrogenase activity;1.25335082780936e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25335082780936e-13!GO:0051082;unfolded protein binding;1.86712057485975e-13!GO:0008135;translation factor activity, nucleic acid binding;2.41148110952321e-13!GO:0006464;protein modification process;2.54073990934034e-13!GO:0005730;nucleolus;3.02810181241626e-13!GO:0003676;nucleic acid binding;3.80916861921282e-13!GO:0022402;cell cycle process;8.7793716325925e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.61833178746711e-12!GO:0044248;cellular catabolic process;2.21481902835681e-12!GO:0005793;ER-Golgi intermediate compartment;4.03351996141492e-12!GO:0005761;mitochondrial ribosome;5.30331848336085e-12!GO:0000313;organellar ribosome;5.30331848336085e-12!GO:0031980;mitochondrial lumen;5.30331848336085e-12!GO:0005759;mitochondrial matrix;5.30331848336085e-12!GO:0048523;negative regulation of cellular process;5.94599730791213e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.45994785840224e-12!GO:0045271;respiratory chain complex I;8.45994785840224e-12!GO:0005747;mitochondrial respiratory chain complex I;8.45994785840224e-12!GO:0042775;organelle ATP synthesis coupled electron transport;9.391824218402e-12!GO:0042773;ATP synthesis coupled electron transport;9.391824218402e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.27491706672774e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.27687935655749e-11!GO:0006413;translational initiation;1.42921177844703e-11!GO:0008565;protein transporter activity;2.06281290616582e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.51809016699546e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.79147483886266e-11!GO:0000375;RNA splicing, via transesterification reactions;2.79147483886266e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.79147483886266e-11!GO:0003743;translation initiation factor activity;2.8806918235079e-11!GO:0032553;ribonucleotide binding;2.94218267758367e-11!GO:0032555;purine ribonucleotide binding;2.94218267758367e-11!GO:0005789;endoplasmic reticulum membrane;3.92274423269789e-11!GO:0016070;RNA metabolic process;3.97533052816397e-11!GO:0006461;protein complex assembly;5.36377137713725e-11!GO:0043687;post-translational protein modification;5.58665772015221e-11!GO:0003712;transcription cofactor activity;6.71181313518686e-11!GO:0051186;cofactor metabolic process;1.12514713158961e-10!GO:0000278;mitotic cell cycle;1.92333160374862e-10!GO:0050794;regulation of cellular process;2.200794928473e-10!GO:0017076;purine nucleotide binding;2.67163397293769e-10!GO:0016604;nuclear body;2.79298818262778e-10!GO:0008639;small protein conjugating enzyme activity;3.41470209159776e-10!GO:0019787;small conjugating protein ligase activity;3.98976857870096e-10!GO:0042981;regulation of apoptosis;4.82147944552055e-10!GO:0043067;regulation of programmed cell death;5.04054907406811e-10!GO:0006446;regulation of translational initiation;5.04741846358437e-10!GO:0009055;electron carrier activity;5.12232226995426e-10!GO:0048519;negative regulation of biological process;5.88068746530241e-10!GO:0004842;ubiquitin-protein ligase activity;6.1479229402659e-10!GO:0000074;regulation of progression through cell cycle;6.46749856867071e-10!GO:0051726;regulation of cell cycle;7.3172092672494e-10!GO:0006974;response to DNA damage stimulus;9.16165423201477e-10!GO:0006913;nucleocytoplasmic transport;1.26424604707362e-09!GO:0005635;nuclear envelope;1.73215091410468e-09!GO:0043069;negative regulation of programmed cell death;1.82530173065073e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.86980489154314e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.86980489154314e-09!GO:0006916;anti-apoptosis;2.39490637021944e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.54604735920449e-09!GO:0051169;nuclear transport;2.71676440526066e-09!GO:0003924;GTPase activity;3.07071088361751e-09!GO:0043066;negative regulation of apoptosis;3.64424900605318e-09!GO:0009259;ribonucleotide metabolic process;4.86601820013103e-09!GO:0006366;transcription from RNA polymerase II promoter;5.03743785338436e-09!GO:0051276;chromosome organization and biogenesis;5.21372211329745e-09!GO:0031965;nuclear membrane;5.65647201860109e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.65647201860109e-09!GO:0042254;ribosome biogenesis and assembly;7.61557062724782e-09!GO:0006323;DNA packaging;8.2727849208749e-09!GO:0016607;nuclear speck;9.06072798711786e-09!GO:0005694;chromosome;9.15884673435171e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.54911825689739e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.00488500356064e-08!GO:0005788;endoplasmic reticulum lumen;1.09340098515666e-08!GO:0044431;Golgi apparatus part;1.3228912112685e-08!GO:0006732;coenzyme metabolic process;1.34661611036194e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.42148874850342e-08!GO:0051246;regulation of protein metabolic process;1.45350679940779e-08!GO:0016881;acid-amino acid ligase activity;1.93634210857931e-08!GO:0009150;purine ribonucleotide metabolic process;1.98361368379351e-08!GO:0006163;purine nucleotide metabolic process;2.14244831751623e-08!GO:0009056;catabolic process;2.23182803213133e-08!GO:0044427;chromosomal part;2.4241856992352e-08!GO:0044453;nuclear membrane part;2.75355772239441e-08!GO:0030120;vesicle coat;3.69604937356292e-08!GO:0030662;coated vesicle membrane;3.69604937356292e-08!GO:0009260;ribonucleotide biosynthetic process;3.92737342190291e-08!GO:0048475;coated membrane;3.95620328461848e-08!GO:0030117;membrane coat;3.95620328461848e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.02313902442401e-08!GO:0005524;ATP binding;4.71008749507615e-08!GO:0009141;nucleoside triphosphate metabolic process;5.09877259595725e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.09877259595725e-08!GO:0065004;protein-DNA complex assembly;5.3259522401727e-08!GO:0015986;ATP synthesis coupled proton transport;5.41422005576006e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.41422005576006e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.43804606177025e-08!GO:0005773;vacuole;5.47086997202775e-08!GO:0005768;endosome;5.53225637864194e-08!GO:0006164;purine nucleotide biosynthetic process;5.74211720508791e-08!GO:0031252;leading edge;7.20005048186985e-08!GO:0050789;regulation of biological process;7.57691547725102e-08!GO:0006333;chromatin assembly or disassembly;7.57691547725102e-08!GO:0009719;response to endogenous stimulus;8.85477568940482e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.34148210920628e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.34148210920628e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.14048466887508e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.14048466887508e-07!GO:0031988;membrane-bound vesicle;1.17912473876285e-07!GO:0032559;adenyl ribonucleotide binding;1.19389641380855e-07!GO:0006281;DNA repair;1.42596714034146e-07!GO:0000785;chromatin;1.59758285393668e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.65010797448254e-07!GO:0017038;protein import;1.91529288245827e-07!GO:0051301;cell division;2.00543871424161e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.77022913768648e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.77022913768648e-07!GO:0042623;ATPase activity, coupled;2.87312465399228e-07!GO:0032446;protein modification by small protein conjugation;3.21271318421248e-07!GO:0031982;vesicle;3.44327237547442e-07!GO:0022403;cell cycle phase;3.8011697035559e-07!GO:0007243;protein kinase cascade;4.21314844290832e-07!GO:0004386;helicase activity;4.28993435030512e-07!GO:0000323;lytic vacuole;4.71020895965202e-07!GO:0005764;lysosome;4.71020895965202e-07!GO:0005525;GTP binding;5.01792608585976e-07!GO:0016567;protein ubiquitination;5.08076307119676e-07!GO:0016887;ATPase activity;5.68575686587388e-07!GO:0046034;ATP metabolic process;5.81100766002478e-07!GO:0031410;cytoplasmic vesicle;5.91982728719959e-07!GO:0065002;intracellular protein transport across a membrane;6.19554632192007e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.34694041263036e-07!GO:0019829;cation-transporting ATPase activity;7.85568005754578e-07!GO:0005643;nuclear pore;9.00380430911942e-07!GO:0030554;adenyl nucleotide binding;9.64755362416415e-07!GO:0031324;negative regulation of cellular metabolic process;1.01411641976085e-06!GO:0009060;aerobic respiration;1.43428289960937e-06!GO:0006754;ATP biosynthetic process;1.46627864456092e-06!GO:0006753;nucleoside phosphate metabolic process;1.46627864456092e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.61673946418899e-06!GO:0008026;ATP-dependent helicase activity;1.61906479481092e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.69259863702922e-06!GO:0016564;transcription repressor activity;1.69420128609466e-06!GO:0048522;positive regulation of cellular process;1.76852025846169e-06!GO:0000087;M phase of mitotic cell cycle;1.83145984000207e-06!GO:0000139;Golgi membrane;1.87507041533356e-06!GO:0007067;mitosis;2.12146694447435e-06!GO:0016787;hydrolase activity;2.2291255209011e-06!GO:0030036;actin cytoskeleton organization and biogenesis;2.65609165059017e-06!GO:0006334;nucleosome assembly;2.74023847193076e-06!GO:0007264;small GTPase mediated signal transduction;2.90424642396906e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.2522206409601e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.32421658925456e-06!GO:0050657;nucleic acid transport;3.35232074679291e-06!GO:0051236;establishment of RNA localization;3.35232074679291e-06!GO:0050658;RNA transport;3.35232074679291e-06!GO:0006403;RNA localization;3.62596161437926e-06!GO:0007005;mitochondrion organization and biogenesis;3.66749188957244e-06!GO:0045786;negative regulation of progression through cell cycle;3.85754799742696e-06!GO:0006399;tRNA metabolic process;3.88307457939321e-06!GO:0004298;threonine endopeptidase activity;4.43395272563715e-06!GO:0006613;cotranslational protein targeting to membrane;4.80835780514851e-06!GO:0045333;cellular respiration;5.28390416211353e-06!GO:0006793;phosphorus metabolic process;5.38146599353372e-06!GO:0006796;phosphate metabolic process;5.38146599353372e-06!GO:0006260;DNA replication;5.69103420235725e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.89480195700552e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.89480195700552e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.89480195700552e-06!GO:0019899;enzyme binding;6.29250454854247e-06!GO:0032561;guanyl ribonucleotide binding;6.36787556902428e-06!GO:0019001;guanyl nucleotide binding;6.36787556902428e-06!GO:0003713;transcription coactivator activity;6.36787556902428e-06!GO:0005770;late endosome;6.46452745089579e-06!GO:0008361;regulation of cell size;6.48339085112497e-06!GO:0005798;Golgi-associated vesicle;6.73061801175535e-06!GO:0003714;transcription corepressor activity;6.86752712056342e-06!GO:0051170;nuclear import;7.46725442406817e-06!GO:0043038;amino acid activation;7.84932628223232e-06!GO:0006418;tRNA aminoacylation for protein translation;7.84932628223232e-06!GO:0043039;tRNA aminoacylation;7.84932628223232e-06!GO:0031497;chromatin assembly;7.9340505416794e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.90189924181701e-06!GO:0016563;transcription activator activity;9.69981008856896e-06!GO:0000245;spliceosome assembly;9.89551102218145e-06!GO:0016049;cell growth;1.00352429956605e-05!GO:0007010;cytoskeleton organization and biogenesis;1.09176019561358e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.27588561548888e-05!GO:0009892;negative regulation of metabolic process;1.31925098298845e-05!GO:0030029;actin filament-based process;1.32928503491744e-05!GO:0016853;isomerase activity;1.40840778634226e-05!GO:0006364;rRNA processing;1.46335652050414e-05!GO:0045259;proton-transporting ATP synthase complex;1.55400628297292e-05!GO:0006099;tricarboxylic acid cycle;1.67381409117362e-05!GO:0046356;acetyl-CoA catabolic process;1.67381409117362e-05!GO:0046930;pore complex;1.76632322920769e-05!GO:0006606;protein import into nucleus;1.76632322920769e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.85056570174539e-05!GO:0009117;nucleotide metabolic process;1.88671761093879e-05!GO:0006752;group transfer coenzyme metabolic process;1.99136360796868e-05!GO:0001558;regulation of cell growth;2.03897496304543e-05!GO:0030867;rough endoplasmic reticulum membrane;2.21069596661138e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.39801139386769e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.5675377013646e-05!GO:0000151;ubiquitin ligase complex;2.70964181375e-05!GO:0003697;single-stranded DNA binding;2.81473749346873e-05!GO:0005667;transcription factor complex;2.93945011232252e-05!GO:0016072;rRNA metabolic process;2.94082956457093e-05!GO:0016859;cis-trans isomerase activity;3.14554174296064e-05!GO:0043623;cellular protein complex assembly;3.20415630893581e-05!GO:0003724;RNA helicase activity;3.31926172982044e-05!GO:0042802;identical protein binding;3.4584931173512e-05!GO:0016310;phosphorylation;3.46335529879943e-05!GO:0008092;cytoskeletal protein binding;3.70474894022524e-05!GO:0045454;cell redox homeostasis;4.1859383408011e-05!GO:0030133;transport vesicle;4.40385138587429e-05!GO:0051789;response to protein stimulus;4.971268090048e-05!GO:0006986;response to unfolded protein;4.971268090048e-05!GO:0006084;acetyl-CoA metabolic process;5.14680112421355e-05!GO:0051187;cofactor catabolic process;5.55448423211787e-05!GO:0016568;chromatin modification;5.72750146119723e-05!GO:0009109;coenzyme catabolic process;6.40029351079765e-05!GO:0051329;interphase of mitotic cell cycle;6.44078390827835e-05!GO:0006612;protein targeting to membrane;6.55490137526135e-05!GO:0051325;interphase;7.12684762948003e-05!GO:0015630;microtubule cytoskeleton;7.40245822855351e-05!GO:0016481;negative regulation of transcription;7.43793784940781e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.49014405801814e-05!GO:0044440;endosomal part;7.82290043007497e-05!GO:0010008;endosome membrane;7.82290043007497e-05!GO:0051028;mRNA transport;8.37304938731011e-05!GO:0043566;structure-specific DNA binding;8.6240555449159e-05!GO:0051188;cofactor biosynthetic process;9.5161742495315e-05!GO:0048468;cell development;9.67165689111474e-05!GO:0031968;organelle outer membrane;0.000123169961107322!GO:0048518;positive regulation of biological process;0.000125023772653783!GO:0005762;mitochondrial large ribosomal subunit;0.000132006967178618!GO:0000315;organellar large ribosomal subunit;0.000132006967178618!GO:0009967;positive regulation of signal transduction;0.000138712537173953!GO:0000279;M phase;0.000147932397746264!GO:0005769;early endosome;0.000147932397746264!GO:0005791;rough endoplasmic reticulum;0.000164127570920403!GO:0005048;signal sequence binding;0.000169369361837049!GO:0065007;biological regulation;0.000193321830614809!GO:0005905;coated pit;0.000193321830614809!GO:0016044;membrane organization and biogenesis;0.00019976427059607!GO:0019867;outer membrane;0.000222681146531505!GO:0051427;hormone receptor binding;0.000236189878779192!GO:0005741;mitochondrial outer membrane;0.000240351178719157!GO:0065009;regulation of a molecular function;0.000246216340274815!GO:0008250;oligosaccharyl transferase complex;0.000247178924476356!GO:0008654;phospholipid biosynthetic process;0.000251331967245097!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000264851845826606!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000266754843853365!GO:0005885;Arp2/3 protein complex;0.00028250639610392!GO:0004576;oligosaccharyl transferase activity;0.000304944574161426!GO:0043021;ribonucleoprotein binding;0.000325623398399955!GO:0001726;ruffle;0.000352203061180843!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000362602675383846!GO:0008186;RNA-dependent ATPase activity;0.00039837612568096!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000400168765623033!GO:0019843;rRNA binding;0.000440747702831762!GO:0035257;nuclear hormone receptor binding;0.000451305453736477!GO:0008047;enzyme activator activity;0.000493726834592826!GO:0006891;intra-Golgi vesicle-mediated transport;0.000509726516172098!GO:0030027;lamellipodium;0.000525859657912159!GO:0048471;perinuclear region of cytoplasm;0.000613718100656599!GO:0016779;nucleotidyltransferase activity;0.000625075980422178!GO:0009108;coenzyme biosynthetic process;0.000640267784508278!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000642779247712273!GO:0007242;intracellular signaling cascade;0.000693534852607716!GO:0007265;Ras protein signal transduction;0.000719369454285406!GO:0030663;COPI coated vesicle membrane;0.00078634755252701!GO:0030126;COPI vesicle coat;0.00078634755252701!GO:0051920;peroxiredoxin activity;0.000804262891281871!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000823282680567675!GO:0018196;peptidyl-asparagine modification;0.000899645574153926!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000899645574153926!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000944510122068961!GO:0030118;clathrin coat;0.00105251410156313!GO:0016740;transferase activity;0.00107908378176282!GO:0005819;spindle;0.00111045269086916!GO:0004004;ATP-dependent RNA helicase activity;0.00111719052443442!GO:0005813;centrosome;0.00112104316087021!GO:0000314;organellar small ribosomal subunit;0.00116425140349281!GO:0005763;mitochondrial small ribosomal subunit;0.00116425140349281!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00119040187575289!GO:0045892;negative regulation of transcription, DNA-dependent;0.00121473052883592!GO:0009966;regulation of signal transduction;0.00123300349070157!GO:0016491;oxidoreductase activity;0.00125973721950051!GO:0033673;negative regulation of kinase activity;0.00143818400494164!GO:0006469;negative regulation of protein kinase activity;0.00143818400494164!GO:0008234;cysteine-type peptidase activity;0.00149950008538506!GO:0051252;regulation of RNA metabolic process;0.00152831497240273!GO:0048500;signal recognition particle;0.00153858472727022!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00165042281928999!GO:0030137;COPI-coated vesicle;0.00170777062624366!GO:0031072;heat shock protein binding;0.00178914565140446!GO:0007050;cell cycle arrest;0.00179833834905686!GO:0016363;nuclear matrix;0.00191118313753632!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00191118313753632!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00191118313753632!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00191118313753632!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00193551900858758!GO:0000786;nucleosome;0.00196951457634637!GO:0016197;endosome transport;0.00203127189991971!GO:0045045;secretory pathway;0.00203430568455702!GO:0030132;clathrin coat of coated pit;0.00212782434776829!GO:0051348;negative regulation of transferase activity;0.00227350938282869!GO:0051168;nuclear export;0.00228793839350119!GO:0043065;positive regulation of apoptosis;0.00240498468118106!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00245176078937006!GO:0003899;DNA-directed RNA polymerase activity;0.0026245576721093!GO:0030658;transport vesicle membrane;0.00262664446307868!GO:0005815;microtubule organizing center;0.00271374061356861!GO:0008632;apoptotic program;0.00281433359134042!GO:0030521;androgen receptor signaling pathway;0.00288842644604957!GO:0043068;positive regulation of programmed cell death;0.00292777060956953!GO:0005083;small GTPase regulator activity;0.00297012180312423!GO:0030127;COPII vesicle coat;0.00321503321760042!GO:0012507;ER to Golgi transport vesicle membrane;0.00321503321760042!GO:0030134;ER to Golgi transport vesicle;0.00329994224068702!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00330720713252431!GO:0045047;protein targeting to ER;0.00330720713252431!GO:0015980;energy derivation by oxidation of organic compounds;0.0033505771559764!GO:0040008;regulation of growth;0.00337268816094929!GO:0030659;cytoplasmic vesicle membrane;0.00340091404000771!GO:0019222;regulation of metabolic process;0.00341035528742169!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00344043465279445!GO:0006414;translational elongation;0.00362609156970571!GO:0007051;spindle organization and biogenesis;0.00396354630417529!GO:0048487;beta-tubulin binding;0.00400602108860157!GO:0008286;insulin receptor signaling pathway;0.00405810420664675!GO:0005096;GTPase activator activity;0.00412877586066889!GO:0006626;protein targeting to mitochondrion;0.00412877586066889!GO:0030119;AP-type membrane coat adaptor complex;0.00423183589388446!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00434535995178637!GO:0050790;regulation of catalytic activity;0.00445368964267569!GO:0035258;steroid hormone receptor binding;0.00471299429611236!GO:0003729;mRNA binding;0.00501280126616168!GO:0030176;integral to endoplasmic reticulum membrane;0.00531260839075232!GO:0008312;7S RNA binding;0.00557693964533816!GO:0046474;glycerophospholipid biosynthetic process;0.00574887585438552!GO:0043488;regulation of mRNA stability;0.00589202118188719!GO:0043487;regulation of RNA stability;0.00589202118188719!GO:0006383;transcription from RNA polymerase III promoter;0.00593516691087947!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00593516691087947!GO:0006402;mRNA catabolic process;0.00593516691087947!GO:0007040;lysosome organization and biogenesis;0.00600550498724643!GO:0043681;protein import into mitochondrion;0.00627994228062284!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0064399359188162!GO:0030131;clathrin adaptor complex;0.00698015303371471!GO:0008139;nuclear localization sequence binding;0.00711054710058072!GO:0017166;vinculin binding;0.00711054710058072!GO:0030660;Golgi-associated vesicle membrane;0.00752346889176946!GO:0005774;vacuolar membrane;0.00780846339115779!GO:0003690;double-stranded DNA binding;0.00806530270602046!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0084839523890189!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00851393794577278!GO:0006417;regulation of translation;0.00855702786124127!GO:0005684;U2-dependent spliceosome;0.00857487348315759!GO:0006950;response to stress;0.00862084272093482!GO:0051101;regulation of DNA binding;0.00862243093397732!GO:0006509;membrane protein ectodomain proteolysis;0.00870709712290918!GO:0033619;membrane protein proteolysis;0.00870709712290918!GO:0005912;adherens junction;0.00897573118954949!GO:0030041;actin filament polymerization;0.00903684760017774!GO:0045792;negative regulation of cell size;0.00903684760017774!GO:0044433;cytoplasmic vesicle part;0.00907062310527895!GO:0007033;vacuole organization and biogenesis;0.00943576086448157!GO:0006839;mitochondrial transport;0.0096190859511201!GO:0009165;nucleotide biosynthetic process;0.00965875210832135!GO:0000059;protein import into nucleus, docking;0.00973944384642494!GO:0005869;dynactin complex;0.00976307865152008!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00988430927097022!GO:0005099;Ras GTPase activator activity;0.00991832112699748!GO:0001725;stress fiber;0.00991832112699748!GO:0032432;actin filament bundle;0.00991832112699748!GO:0045893;positive regulation of transcription, DNA-dependent;0.00991832112699748!GO:0031902;late endosome membrane;0.00991832112699748!GO:0004197;cysteine-type endopeptidase activity;0.0100356450892047!GO:0051087;chaperone binding;0.0100795162401437!GO:0008180;signalosome;0.0101382072633682!GO:0030308;negative regulation of cell growth;0.0104477031783919!GO:0006650;glycerophospholipid metabolic process;0.0104477031783919!GO:0006979;response to oxidative stress;0.0107090227040504!GO:0000075;cell cycle checkpoint;0.0109494763037802!GO:0000082;G1/S transition of mitotic cell cycle;0.0112739429222895!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0112990617403611!GO:0051338;regulation of transferase activity;0.011321707102306!GO:0030833;regulation of actin filament polymerization;0.0114352998539866!GO:0046489;phosphoinositide biosynthetic process;0.0115366946097533!GO:0012506;vesicle membrane;0.0116989145316834!GO:0031418;L-ascorbic acid binding;0.0120519960875924!GO:0007006;mitochondrial membrane organization and biogenesis;0.0120519960875924!GO:0008243;plasminogen activator activity;0.0121808267635667!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0121991424590163!GO:0032940;secretion by cell;0.0121991424590163!GO:0045941;positive regulation of transcription;0.0123136373115481!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0123278933589186!GO:0030880;RNA polymerase complex;0.0124849313160453!GO:0019798;procollagen-proline dioxygenase activity;0.0127454779513247!GO:0008637;apoptotic mitochondrial changes;0.012824571322838!GO:0043284;biopolymer biosynthetic process;0.0128965473321494!GO:0005862;muscle thin filament tropomyosin;0.0132503627278514!GO:0006897;endocytosis;0.0132597894865972!GO:0010324;membrane invagination;0.0132597894865972!GO:0006091;generation of precursor metabolites and energy;0.0133768109778437!GO:0050681;androgen receptor binding;0.0134435081400347!GO:0008320;protein transmembrane transporter activity;0.0134589618317255!GO:0003779;actin binding;0.0137792158890279!GO:0015631;tubulin binding;0.0141157870472103!GO:0031529;ruffle organization and biogenesis;0.0143543889358549!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0148570806079249!GO:0015399;primary active transmembrane transporter activity;0.0148570806079249!GO:0031543;peptidyl-proline dioxygenase activity;0.0148704649563201!GO:0006352;transcription initiation;0.0150451007381443!GO:0030518;steroid hormone receptor signaling pathway;0.0151171129075665!GO:0045936;negative regulation of phosphate metabolic process;0.0152068191939682!GO:0000209;protein polyubiquitination;0.0153506103678779!GO:0016860;intramolecular oxidoreductase activity;0.0161895423964191!GO:0007266;Rho protein signal transduction;0.0162911099647122!GO:0030695;GTPase regulator activity;0.0163788220119138!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0165422523562521!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0165422523562521!GO:0006892;post-Golgi vesicle-mediated transport;0.0167663856121644!GO:0030125;clathrin vesicle coat;0.017248042108964!GO:0030665;clathrin coated vesicle membrane;0.017248042108964!GO:0044452;nucleolar part;0.0180580344596593!GO:0006401;RNA catabolic process;0.0181202712616567!GO:0050811;GABA receptor binding;0.0183448480158972!GO:0005832;chaperonin-containing T-complex;0.0183905569413209!GO:0044262;cellular carbohydrate metabolic process;0.0187661433278379!GO:0043022;ribosome binding;0.0188299286027852!GO:0043549;regulation of kinase activity;0.0188589433687681!GO:0030384;phosphoinositide metabolic process;0.0189959016808014!GO:0007160;cell-matrix adhesion;0.0193468204214285!GO:0016272;prefoldin complex;0.0200825460315524!GO:0006302;double-strand break repair;0.0202204203954134!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0204633264007997!GO:0051287;NAD binding;0.0207304944601239!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0208739610877819!GO:0006818;hydrogen transport;0.0208820361034781!GO:0008283;cell proliferation;0.0212209385259649!GO:0016251;general RNA polymerase II transcription factor activity;0.0222169056484345!GO:0003682;chromatin binding;0.0222231411276145!GO:0044437;vacuolar part;0.022248412430022!GO:0051235;maintenance of localization;0.0223230212739756!GO:0007030;Golgi organization and biogenesis;0.0223300715281745!GO:0007052;mitotic spindle organization and biogenesis;0.0223300715281745!GO:0051128;regulation of cellular component organization and biogenesis;0.0225790348078816!GO:0016584;nucleosome positioning;0.0225790348078816!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0225790348078816!GO:0015002;heme-copper terminal oxidase activity;0.0225790348078816!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0225790348078816!GO:0004129;cytochrome-c oxidase activity;0.0225790348078816!GO:0005765;lysosomal membrane;0.0226043659284451!GO:0030100;regulation of endocytosis;0.0226749499609193!GO:0007167;enzyme linked receptor protein signaling pathway;0.0228904656191775!GO:0031589;cell-substrate adhesion;0.0229025599599664!GO:0008094;DNA-dependent ATPase activity;0.0229463302214614!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0231194561738425!GO:0000428;DNA-directed RNA polymerase complex;0.0231194561738425!GO:0004177;aminopeptidase activity;0.023132939635831!GO:0046467;membrane lipid biosynthetic process;0.0233168529702075!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0233168529702075!GO:0005657;replication fork;0.0235839204652572!GO:0032507;maintenance of cellular protein localization;0.0244128865324331!GO:0000776;kinetochore;0.0244128865324331!GO:0001527;microfibril;0.0244633644689505!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0248173732520988!GO:0051336;regulation of hydrolase activity;0.0252511747720336!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0252785521410089!GO:0046519;sphingoid metabolic process;0.025296864476089!GO:0006607;NLS-bearing substrate import into nucleus;0.0255266495714703!GO:0005938;cell cortex;0.0257044106507128!GO:0006261;DNA-dependent DNA replication;0.0257526597835245!GO:0006740;NADPH regeneration;0.0260471856302198!GO:0006098;pentose-phosphate shunt;0.0260471856302198!GO:0006508;proteolysis;0.0262649783136488!GO:0005100;Rho GTPase activator activity;0.0263767935839167!GO:0015992;proton transport;0.0265047712531291!GO:0008147;structural constituent of bone;0.0265621276666382!GO:0006917;induction of apoptosis;0.0267341936201088!GO:0000049;tRNA binding;0.0274385955327809!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0278868650583446!GO:0045334;clathrin-coated endocytic vesicle;0.0278923078519212!GO:0031371;ubiquitin conjugating enzyme complex;0.0281264545848978!GO:0007021;tubulin folding;0.028412868904208!GO:0031625;ubiquitin protein ligase binding;0.0290306161994741!GO:0051098;regulation of binding;0.0290470906818228!GO:0006672;ceramide metabolic process;0.0292008245741713!GO:0006518;peptide metabolic process;0.0293122171132991!GO:0031124;mRNA 3'-end processing;0.0293312662260291!GO:0001836;release of cytochrome c from mitochondria;0.0293312662260291!GO:0007034;vacuolar transport;0.0300354791347909!GO:0008538;proteasome activator activity;0.0300946519969517!GO:0047485;protein N-terminus binding;0.0307099942443256!GO:0035035;histone acetyltransferase binding;0.0309997017847501!GO:0003756;protein disulfide isomerase activity;0.0312354860620331!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0312354860620331!GO:0003746;translation elongation factor activity;0.0318772610883135!GO:0012502;induction of programmed cell death;0.0320036850475693!GO:0000339;RNA cap binding;0.0322663386021204!GO:0051270;regulation of cell motility;0.032369562543806!GO:0051052;regulation of DNA metabolic process;0.0327630374478768!GO:0006611;protein export from nucleus;0.0330690274113469!GO:0043086;negative regulation of catalytic activity;0.0331797984226013!GO:0006376;mRNA splice site selection;0.033211856505635!GO:0000389;nuclear mRNA 3'-splice site recognition;0.033211856505635!GO:0003684;damaged DNA binding;0.033211856505635!GO:0005637;nuclear inner membrane;0.0335797554071198!GO:0045859;regulation of protein kinase activity;0.0348783449858289!GO:0008154;actin polymerization and/or depolymerization;0.0353735440659215!GO:0042326;negative regulation of phosphorylation;0.0353735440659215!GO:0003711;transcription elongation regulator activity;0.0353735440659215!GO:0019783;small conjugating protein-specific protease activity;0.0361056296968797!GO:0031326;regulation of cellular biosynthetic process;0.0364665279145923!GO:0022884;macromolecule transmembrane transporter activity;0.0369200116162787!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0369200116162787!GO:0006354;RNA elongation;0.0370511027101225!GO:0004674;protein serine/threonine kinase activity;0.0370511027101225!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0378093758003783!GO:0005784;translocon complex;0.0381053004646317!GO:0016791;phosphoric monoester hydrolase activity;0.0381181423861262!GO:0030522;intracellular receptor-mediated signaling pathway;0.0384209772163704!GO:0005586;collagen type III;0.0397019421144962!GO:0004843;ubiquitin-specific protease activity;0.0398233033982101!GO:0030032;lamellipodium biogenesis;0.040246770495621!GO:0031901;early endosome membrane;0.040246770495621!GO:0045185;maintenance of protein localization;0.0420801881271966!GO:0005758;mitochondrial intermembrane space;0.042498488227609!GO:0009889;regulation of biosynthetic process;0.0426286690883777!GO:0005874;microtubule;0.0430012885949539!GO:0022406;membrane docking;0.0435109223388916!GO:0048278;vesicle docking;0.0435109223388916!GO:0006487;protein amino acid N-linked glycosylation;0.0444845392863536!GO:0030911;TPR domain binding;0.0458317421731829!GO:0015036;disulfide oxidoreductase activity;0.0475740180376852!GO:0003678;DNA helicase activity;0.0478198627790877!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0488513420267152!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0488513420267152!GO:0045767;regulation of anti-apoptosis;0.0489437256296326!GO:0006984;ER-nuclear signaling pathway;0.0496546281473734!GO:0006405;RNA export from nucleus;0.0499351168993041
|sample_id=12239
|sample_note=Jan 20 librarian
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=chorion
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12239-129G7;search_select_hide=table117:FF:12239-129G7
}}
}}

Latest revision as of 18:36, 4 June 2020

Name:chorionic membrane cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12506
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuechorion
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineNA
companyNA
collaborationHiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004737
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12506 CAGE DRX008541 DRR009413
Accession ID Hg19

Library idBAMCTSS
CNhs12506 DRZ000838 DRZ002223
Accession ID Hg38

Library idBAMCTSS
CNhs12506 DRZ012188 DRZ013573
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.1
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0996
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.438
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0381
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.529
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0374
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.15
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0381
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.215
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00806
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte2.339988e-4
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0731
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.261
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.341
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0602
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.605
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0381
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0381
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.164
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0381
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.298
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0149
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0381
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.164
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0.0381
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.293
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.624
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0.408
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.438
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0381
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.642
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12506

Jaspar motifP-value
MA0002.20.114
MA0003.10.324
MA0004.10.0848
MA0006.10.00509
MA0007.10.767
MA0009.10.871
MA0014.10.627
MA0017.10.157
MA0018.20.0166
MA0019.10.12
MA0024.10.283
MA0025.10.12
MA0027.10.373
MA0028.10.479
MA0029.10.347
MA0030.10.957
MA0031.10.503
MA0035.20.727
MA0038.10.429
MA0039.20.637
MA0040.10.511
MA0041.10.541
MA0042.10.568
MA0043.10.00151
MA0046.10.454
MA0047.20.402
MA0048.10.584
MA0050.10.829
MA0051.10.496
MA0052.10.12
MA0055.10.617
MA0057.10.93
MA0058.10.0319
MA0059.10.00502
MA0060.10.0121
MA0061.10.0195
MA0062.20.00256
MA0065.20.396
MA0066.10.339
MA0067.17.147e-4
MA0068.10.0437
MA0069.10.8
MA0070.10.862
MA0071.10.557
MA0072.10.781
MA0073.10.902
MA0074.10.348
MA0076.10.381
MA0077.10.953
MA0078.10.487
MA0079.20.255
MA0080.21.17241e-6
MA0081.10.0237
MA0083.17.64567e-5
MA0084.10.138
MA0087.10.498
MA0088.10.449
MA0090.11.06921e-8
MA0091.10.0867
MA0092.10.105
MA0093.10.104
MA0099.20.389
MA0100.10.565
MA0101.10.00293
MA0102.20.24
MA0103.10.28
MA0104.23.60811e-5
MA0105.10.0238
MA0106.10.242
MA0107.10.0131
MA0108.21.51129e-8
MA0111.10.797
MA0112.20.0807
MA0113.10.436
MA0114.10.487
MA0115.10.444
MA0116.10.0614
MA0117.10.236
MA0119.10.112
MA0122.10.405
MA0124.10.657
MA0125.10.64
MA0131.10.318
MA0135.10.42
MA0136.12.57729e-6
MA0137.20.757
MA0138.20.594
MA0139.10.981
MA0140.10.371
MA0141.10.0709
MA0142.10.153
MA0143.10.787
MA0144.10.276
MA0145.10.2
MA0146.10.952
MA0147.11.00713e-4
MA0148.10.999
MA0149.10.553
MA0150.10.00494
MA0152.10.141
MA0153.10.186
MA0154.10.701
MA0155.10.348
MA0156.15.19486e-4
MA0157.10.703
MA0159.10.891
MA0160.10.376
MA0162.10.0882
MA0163.10.229
MA0164.10.695
MA0258.10.918
MA0259.10.0249



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12506

Novel motifP-value
10.136
100.124
1000.151
1010.206
1020.632
1030.934
1040.758
1050.397
1060.684
1070.0587
1080.64
1090.331
110.35
1100.934
1110.0157
1120.567
1130.762
1140.283
1150.249
1160.767
1170.757
1180.646
1190.287
120.744
1200.294
1210.739
1220.401
1231.49846e-4
1240.0438
1250.689
1260.625
1270.514
1280.612
1290.407
130.572
1300.417
1310.489
1320.28
1330.178
1340.685
1350.415
1360.248
1370.0592
1380.516
1390.0317
140.54
1400.412
1410.364
1420.724
1430.553
1440.36
1450.918
1460.636
1470.629
1480.403
1490.115
150.359
1500.254
1510.836
1520.00254
1530.699
1540.559
1550.299
1560.519
1570.407
1580.327
1590.766
160.127
1600.534
1610.251
1620.401
1630.803
1640.566
1650.368
1660.534
1670.26
1680.371
1690.275
170.718
180.737
190.16
20.0839
200.368
210.953
220.59
230.816
240.904
250.392
260.301
270.586
280.514
290.434
30.498
300.0436
310.76
328.94203e-7
330.626
340.275
350.225
360.0541
370.561
380.571
390.215
40.733
400.333
410.127
420.383
430.309
440.479
450.125
460.402
470.398
480.545
490.124
50.512
500.588
510.949
520.716
530.2
540.82
550.682
560.829
570.699
580.0806
590.25
60.271
600.659
610.883
620.126
630.664
640.422
650.963
660.518
670.732
680.332
690.43
70.503
700.281
710.0455
720.996
730.00408
740.203
750.653
760.365
770.0664
780.821
790.0797
80.636
800.529
810.151
820.752
830.38
840.11
850.969
860.876
870.103
880.941
890.696
90.863
900.418
910.512
920.312
930.659
940.42
950.175
960.179
970.467
980.394
990.0594



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12506


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002541 (chorionic membrane mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000476 (acellular anatomical structure)
0000478 (extraembryonic structure)
0000158 (membranous layer)
0003124 (chorion)
0000920 (egg chorion)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000038 (human chorionic membrane stem cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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