FF:12260-130A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004711 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004711 | ||
|accession_numbers=CAGE;DRX008589;DRR009461;DRZ000886;DRZ002271;DRZ012236;DRZ013621 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037271;DRR041637;DRZ007279 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000350,FF:0000049,FF:0000341,FF:0000344,FF:0000410 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= biol_rep1 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000341,FF:0000410,FF:12260-130A1 | |fonse_treatment_closure=EFO:0000369,FF:0000341,FF:0000410,FF:12260-130A1 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep1%2520%2528MM%2520XIX%2520-%25201%2529.CNhs11936.12260-130A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep1%2520%2528MM%2520XIX%2520-%25201%2529.CNhs11936.12260-130A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep1%2520%2528MM%2520XIX%2520-%25201%2529.CNhs11936.12260-130A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep1%2520%2528MM%2520XIX%2520-%25201%2529.CNhs11936.12260-130A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep1%2520%2528MM%2520XIX%2520-%25201%2529.CNhs11936.12260-130A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12260-130A1 | |id=FF:12260-130A1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000410 | ||
|name=Lymphatic Endothelial cells response to VEGFC | |is_obsolete= | ||
|library_id=CNhs11936 | |||
|library_id_phase_based=2:CNhs11936 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12260 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10062.CCGTCC.12260 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12260 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10062.CCGTCC.12260 | |||
|name=Lymphatic Endothelial cells response to VEGFC | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11936,LSID835,release010,COMPLETED | |profile_hcage=CNhs11936,LSID835,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=130 | |rna_box=130 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 83: | ||
|rna_tube_id=130A1 | |rna_tube_id=130A1 | ||
|rna_weight_ug=9.06 | |rna_weight_ug=9.06 | ||
|rnaseq_library_id=SRhi10062.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Lymphatic Endothelial cells response to Vascular endothelial growth factor C | |sample_experimental_condition=Lymphatic Endothelial cells response to Vascular endothelial growth factor C | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.55134817813177e-230!GO:0005737;cytoplasm;5.36625650521118e-196!GO:0043226;organelle;6.87655227198861e-178!GO:0043229;intracellular organelle;2.65276083204737e-177!GO:0043231;intracellular membrane-bound organelle;5.17496614008942e-177!GO:0043227;membrane-bound organelle;8.52129741017523e-177!GO:0044444;cytoplasmic part;1.48834949927423e-142!GO:0044422;organelle part;2.54545344735843e-132!GO:0044446;intracellular organelle part;8.05437855432883e-131!GO:0032991;macromolecular complex;5.3739256456244e-93!GO:0005515;protein binding;4.56389746099347e-86!GO:0030529;ribonucleoprotein complex;1.51285386115165e-82!GO:0044238;primary metabolic process;3.23277796707228e-82!GO:0044237;cellular metabolic process;2.00132493717682e-81!GO:0043170;macromolecule metabolic process;5.63087404530535e-73!GO:0005739;mitochondrion;2.52319514291798e-71!GO:0043233;organelle lumen;2.51310528604376e-68!GO:0031974;membrane-enclosed lumen;2.51310528604376e-68!GO:0003723;RNA binding;1.28189451432735e-65!GO:0044428;nuclear part;1.52730666750552e-63!GO:0005634;nucleus;1.61263911839859e-61!GO:0005840;ribosome;5.73424188680134e-53!GO:0019538;protein metabolic process;5.73424188680134e-53!GO:0031090;organelle membrane;1.98877725254713e-51!GO:0006412;translation;4.82609067401655e-50!GO:0044429;mitochondrial part;3.33107840019361e-47!GO:0003735;structural constituent of ribosome;6.80329066195674e-47!GO:0043234;protein complex;8.50469374019417e-47!GO:0044260;cellular macromolecule metabolic process;5.73061068956378e-46!GO:0044267;cellular protein metabolic process;7.55179213816773e-46!GO:0016043;cellular component organization and biogenesis;1.42872469122605e-45!GO:0031967;organelle envelope;1.07378495705286e-42!GO:0031975;envelope;2.8053634776707e-42!GO:0015031;protein transport;7.57057733090491e-42!GO:0033036;macromolecule localization;1.62801073248442e-41!GO:0005829;cytosol;3.2969664046829e-41!GO:0006396;RNA processing;8.29917513573951e-41!GO:0033279;ribosomal subunit;1.64962601681956e-40!GO:0045184;establishment of protein localization;3.98558433100141e-39!GO:0031981;nuclear lumen;4.77651763961647e-39!GO:0009058;biosynthetic process;7.14046282398252e-39!GO:0008104;protein localization;1.01225182978942e-38!GO:0044249;cellular biosynthetic process;2.26306817062021e-37!GO:0043283;biopolymer metabolic process;3.27917127854909e-37!GO:0009059;macromolecule biosynthetic process;2.4341657751836e-36!GO:0046907;intracellular transport;1.10583472951394e-33!GO:0010467;gene expression;1.50035347355096e-33!GO:0016071;mRNA metabolic process;1.51589518669217e-32!GO:0005740;mitochondrial envelope;1.15185292122548e-31!GO:0065003;macromolecular complex assembly;1.72546246494107e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.18515226088752e-30!GO:0008380;RNA splicing;1.42168408061536e-30!GO:0031966;mitochondrial membrane;6.31550217486086e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.07662773384136e-29!GO:0006996;organelle organization and biogenesis;6.13122839088294e-29!GO:0043228;non-membrane-bound organelle;2.12632389210635e-28!GO:0043232;intracellular non-membrane-bound organelle;2.12632389210635e-28!GO:0006886;intracellular protein transport;2.25334908188412e-28!GO:0006397;mRNA processing;2.61846669596784e-28!GO:0022607;cellular component assembly;1.29647194658424e-27!GO:0019866;organelle inner membrane;1.56481243092604e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.7391259157191e-27!GO:0005743;mitochondrial inner membrane;1.66044848678543e-25!GO:0005654;nucleoplasm;1.09767421908713e-23!GO:0005681;spliceosome;1.41480930690817e-23!GO:0051649;establishment of cellular localization;5.42198529494634e-23!GO:0044445;cytosolic part;5.86645079434783e-23!GO:0006119;oxidative phosphorylation;7.30001690143047e-23!GO:0051641;cellular localization;1.3712525040268e-22!GO:0000166;nucleotide binding;1.50757086465101e-22!GO:0015935;small ribosomal subunit;1.72681970372173e-21!GO:0006259;DNA metabolic process;1.39866712170878e-20!GO:0015934;large ribosomal subunit;5.23824540178139e-20!GO:0044455;mitochondrial membrane part;6.64797474346516e-20!GO:0012505;endomembrane system;1.19582084764998e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.20002289932827e-19!GO:0005783;endoplasmic reticulum;1.27465951203074e-19!GO:0016462;pyrophosphatase activity;1.27465951203074e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.58320112473106e-19!GO:0044451;nucleoplasm part;1.68192637822406e-19!GO:0017111;nucleoside-triphosphatase activity;3.81989373413473e-19!GO:0031980;mitochondrial lumen;3.98919160111024e-19!GO:0005759;mitochondrial matrix;3.98919160111024e-19!GO:0006457;protein folding;1.25786393356094e-18!GO:0000502;proteasome complex (sensu Eukaryota);2.47563594194082e-18!GO:0051186;cofactor metabolic process;2.1891379840526e-17!GO:0016874;ligase activity;3.37103720674727e-17!GO:0008134;transcription factor binding;4.30834963043154e-17!GO:0005746;mitochondrial respiratory chain;4.49943812215998e-17!GO:0032553;ribonucleotide binding;1.09287181234509e-16!GO:0032555;purine ribonucleotide binding;1.09287181234509e-16!GO:0007049;cell cycle;1.13391012736884e-16!GO:0022618;protein-RNA complex assembly;1.25006168453239e-16!GO:0005730;nucleolus;1.28914190370581e-16!GO:0017076;purine nucleotide binding;1.3410056250967e-16!GO:0048770;pigment granule;2.45997877460495e-16!GO:0042470;melanosome;2.45997877460495e-16!GO:0044265;cellular macromolecule catabolic process;4.369348366181e-16!GO:0043285;biopolymer catabolic process;4.52822031983031e-16!GO:0044432;endoplasmic reticulum part;4.88242106230281e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.26746746996281e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.33324406448945e-16!GO:0006512;ubiquitin cycle;6.47787457501177e-16!GO:0006915;apoptosis;7.89667624410112e-16!GO:0012501;programmed cell death;8.42307641800445e-16!GO:0016192;vesicle-mediated transport;1.72106724685098e-15!GO:0005794;Golgi apparatus;2.71806950651063e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.77899268568104e-15!GO:0019941;modification-dependent protein catabolic process;3.81323073462016e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.81323073462016e-15!GO:0005761;mitochondrial ribosome;4.49650353491751e-15!GO:0000313;organellar ribosome;4.49650353491751e-15!GO:0003676;nucleic acid binding;5.86111782274884e-15!GO:0044257;cellular protein catabolic process;5.95137209209292e-15!GO:0009057;macromolecule catabolic process;6.66720683923449e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.42444284677232e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.72887998172425e-15!GO:0003954;NADH dehydrogenase activity;9.72887998172425e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.72887998172425e-15!GO:0030163;protein catabolic process;1.85893565153206e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.57512797732721e-14!GO:0044248;cellular catabolic process;5.7855919169116e-14!GO:0008219;cell death;9.0824960822996e-14!GO:0016265;death;9.0824960822996e-14!GO:0006605;protein targeting;9.4043294333097e-14!GO:0006732;coenzyme metabolic process;1.48663637817639e-13!GO:0008135;translation factor activity, nucleic acid binding;1.62700570898715e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.80621167868154e-13!GO:0043412;biopolymer modification;1.92884511060983e-13!GO:0051082;unfolded protein binding;2.05812499217278e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.39694606526862e-13!GO:0042773;ATP synthesis coupled electron transport;2.39694606526862e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.60072040504058e-13!GO:0045271;respiratory chain complex I;6.60072040504058e-13!GO:0005747;mitochondrial respiratory chain complex I;6.60072040504058e-13!GO:0022402;cell cycle process;8.96462237206701e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.38564948070773e-12!GO:0048193;Golgi vesicle transport;1.69147101404672e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.86165359608991e-12!GO:0000375;RNA splicing, via transesterification reactions;2.86165359608991e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.86165359608991e-12!GO:0006464;protein modification process;3.62181153099254e-12!GO:0005635;nuclear envelope;4.48087361505736e-12!GO:0016070;RNA metabolic process;4.71716654850945e-12!GO:0000278;mitotic cell cycle;7.72661464414245e-12!GO:0005524;ATP binding;1.14850269297455e-11!GO:0032559;adenyl ribonucleotide binding;1.44463906392311e-11!GO:0042254;ribosome biogenesis and assembly;1.6176391244953e-11!GO:0006974;response to DNA damage stimulus;1.84813755616455e-11!GO:0030554;adenyl nucleotide binding;2.17471581947337e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.29827299981659e-11!GO:0005789;endoplasmic reticulum membrane;4.84497456247576e-11!GO:0009259;ribonucleotide metabolic process;5.29524070523262e-11!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.37553677653436e-11!GO:0042981;regulation of apoptosis;7.01022279793736e-11!GO:0003712;transcription cofactor activity;9.33705995509102e-11!GO:0006163;purine nucleotide metabolic process;9.57175002517806e-11!GO:0043067;regulation of programmed cell death;1.06428988950554e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.06428988950554e-10!GO:0043687;post-translational protein modification;1.08133101780739e-10!GO:0008639;small protein conjugating enzyme activity;1.24613327625806e-10!GO:0006413;translational initiation;1.4983496374249e-10!GO:0003743;translation initiation factor activity;1.60940174238956e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.74333242801148e-10!GO:0009150;purine ribonucleotide metabolic process;1.74333242801148e-10!GO:0016604;nuclear body;1.85493545566045e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.86331365265955e-10!GO:0031965;nuclear membrane;1.94509619907161e-10!GO:0050794;regulation of cellular process;2.02344308563832e-10!GO:0004842;ubiquitin-protein ligase activity;2.46449841369765e-10!GO:0044453;nuclear membrane part;2.63261007592825e-10!GO:0006461;protein complex assembly;2.7315582045391e-10!GO:0008565;protein transporter activity;3.48198825039456e-10!GO:0009055;electron carrier activity;5.09353402387947e-10!GO:0006164;purine nucleotide biosynthetic process;6.7124134907164e-10!GO:0019787;small conjugating protein ligase activity;8.37243629693266e-10!GO:0005773;vacuole;1.10483755191918e-09!GO:0042623;ATPase activity, coupled;1.15740268559467e-09!GO:0009260;ribonucleotide biosynthetic process;1.16498040757782e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.21582591493112e-09!GO:0006446;regulation of translational initiation;1.28627351104147e-09!GO:0048523;negative regulation of cellular process;1.40352367352166e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.81923922034174e-09!GO:0003924;GTPase activity;2.5820611985308e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.70468738947674e-09!GO:0009056;catabolic process;2.88876283098497e-09!GO:0051726;regulation of cell cycle;3.17101895948218e-09!GO:0009141;nucleoside triphosphate metabolic process;3.44062045618663e-09!GO:0006913;nucleocytoplasmic transport;3.6394075226077e-09!GO:0043069;negative regulation of programmed cell death;3.66967174425349e-09!GO:0006916;anti-apoptosis;3.72763880493202e-09!GO:0006281;DNA repair;4.20376159625617e-09!GO:0043066;negative regulation of apoptosis;4.42916283845495e-09!GO:0000074;regulation of progression through cell cycle;4.60348270786428e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.80566863741244e-09!GO:0005793;ER-Golgi intermediate compartment;4.92956649068998e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.98814756325494e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.98814756325494e-09!GO:0016887;ATPase activity;5.76796377105363e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.77410638939851e-09!GO:0051188;cofactor biosynthetic process;6.86328588872284e-09!GO:0015986;ATP synthesis coupled proton transport;8.08586994639815e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.08586994639815e-09!GO:0051169;nuclear transport;8.48143632544555e-09!GO:0009060;aerobic respiration;9.59579713826526e-09!GO:0009719;response to endogenous stimulus;9.60810100530785e-09!GO:0005694;chromosome;1.0965908372179e-08!GO:0005768;endosome;1.78741807752511e-08!GO:0016881;acid-amino acid ligase activity;1.80796530683467e-08!GO:0000323;lytic vacuole;1.84586540835927e-08!GO:0005764;lysosome;1.84586540835927e-08!GO:0005525;GTP binding;1.93374700444847e-08!GO:0051246;regulation of protein metabolic process;1.94549365935629e-08!GO:0046034;ATP metabolic process;2.02870218819046e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.30734963392608e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.30734963392608e-08!GO:0005839;proteasome core complex (sensu Eukaryota);2.42964462263455e-08!GO:0051276;chromosome organization and biogenesis;2.77043470428783e-08!GO:0000087;M phase of mitotic cell cycle;3.11885943021826e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.14521847764775e-08!GO:0007067;mitosis;3.33657558805617e-08!GO:0006366;transcription from RNA polymerase II promoter;3.36274724155597e-08!GO:0048519;negative regulation of biological process;3.42632666787522e-08!GO:0004386;helicase activity;3.64790309640204e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.34918650731384e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.34918650731384e-08!GO:0005643;nuclear pore;4.35025415509284e-08!GO:0044427;chromosomal part;4.73254599863438e-08!GO:0006260;DNA replication;5.03070134625161e-08!GO:0045333;cellular respiration;5.15281383027019e-08!GO:0016607;nuclear speck;5.97120837031403e-08!GO:0031988;membrane-bound vesicle;6.20169356563809e-08!GO:0016023;cytoplasmic membrane-bound vesicle;6.33051616965632e-08!GO:0065002;intracellular protein transport across a membrane;6.59837506765108e-08!GO:0051301;cell division;7.49403143066722e-08!GO:0009117;nucleotide metabolic process;8.2601049870067e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.77261245525774e-08!GO:0006399;tRNA metabolic process;9.42946028857156e-08!GO:0006323;DNA packaging;9.71096838070204e-08!GO:0008026;ATP-dependent helicase activity;1.17931859723812e-07!GO:0006364;rRNA processing;1.23754171007306e-07!GO:0019829;cation-transporting ATPase activity;1.34809262191503e-07!GO:0017038;protein import;1.44326547890279e-07!GO:0005788;endoplasmic reticulum lumen;1.50141173299052e-07!GO:0006754;ATP biosynthetic process;1.52921185173624e-07!GO:0006753;nucleoside phosphate metabolic process;1.52921185173624e-07!GO:0022403;cell cycle phase;1.90850519892918e-07!GO:0016072;rRNA metabolic process;1.98416035875577e-07!GO:0065004;protein-DNA complex assembly;2.25229709760723e-07!GO:0004298;threonine endopeptidase activity;2.39500711998963e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.55542886614539e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.58608017562023e-07!GO:0006099;tricarboxylic acid cycle;3.26686585372125e-07!GO:0046356;acetyl-CoA catabolic process;3.26686585372125e-07!GO:0032561;guanyl ribonucleotide binding;3.26686585372125e-07!GO:0019001;guanyl nucleotide binding;3.26686585372125e-07!GO:0009108;coenzyme biosynthetic process;3.40097671009257e-07!GO:0007243;protein kinase cascade;4.39689876200409e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.43650288578152e-07!GO:0006793;phosphorus metabolic process;4.72081722886045e-07!GO:0006796;phosphate metabolic process;4.72081722886045e-07!GO:0007005;mitochondrion organization and biogenesis;4.99952806382442e-07!GO:0046930;pore complex;5.52792651181366e-07!GO:0031982;vesicle;5.87376754002582e-07!GO:0050789;regulation of biological process;7.72543754956679e-07!GO:0048522;positive regulation of cellular process;7.72543754956679e-07!GO:0006084;acetyl-CoA metabolic process;8.93705214674539e-07!GO:0006333;chromatin assembly or disassembly;9.03559910191528e-07!GO:0031410;cytoplasmic vesicle;9.71383917401949e-07!GO:0005770;late endosome;9.78309213032186e-07!GO:0000785;chromatin;1.08456580151759e-06!GO:0016779;nucleotidyltransferase activity;1.10251974432494e-06!GO:0030120;vesicle coat;1.11725795625067e-06!GO:0030662;coated vesicle membrane;1.11725795625067e-06!GO:0016491;oxidoreductase activity;1.27894376807149e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.29479492509032e-06!GO:0050657;nucleic acid transport;1.36118098295646e-06!GO:0051236;establishment of RNA localization;1.36118098295646e-06!GO:0050658;RNA transport;1.36118098295646e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.47918215290154e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.47918215290154e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.47918215290154e-06!GO:0006403;RNA localization;1.4943133621788e-06!GO:0051187;cofactor catabolic process;1.51880641876362e-06!GO:0016310;phosphorylation;1.84471251716356e-06!GO:0048475;coated membrane;2.02351346851326e-06!GO:0030117;membrane coat;2.02351346851326e-06!GO:0003697;single-stranded DNA binding;2.37853605496528e-06!GO:0045259;proton-transporting ATP synthase complex;2.41279812566374e-06!GO:0043038;amino acid activation;2.49426442289958e-06!GO:0006418;tRNA aminoacylation for protein translation;2.49426442289958e-06!GO:0043039;tRNA aminoacylation;2.49426442289958e-06!GO:0016787;hydrolase activity;3.88219695662953e-06!GO:0031252;leading edge;3.90860091447459e-06!GO:0006752;group transfer coenzyme metabolic process;4.21810975663725e-06!GO:0032446;protein modification by small protein conjugation;4.69519235349788e-06!GO:0044431;Golgi apparatus part;4.79795796841219e-06!GO:0009109;coenzyme catabolic process;5.1440761699413e-06!GO:0044440;endosomal part;5.20053785688873e-06!GO:0010008;endosome membrane;5.20053785688873e-06!GO:0030036;actin cytoskeleton organization and biogenesis;5.29365899960696e-06!GO:0016740;transferase activity;5.67629605089724e-06!GO:0019899;enzyme binding;5.94019421852149e-06!GO:0016567;protein ubiquitination;6.13507141095312e-06!GO:0005667;transcription factor complex;7.02061376001537e-06!GO:0019867;outer membrane;7.24777730124526e-06!GO:0016044;membrane organization and biogenesis;7.4890503951808e-06!GO:0031968;organelle outer membrane;7.4890503951808e-06!GO:0015630;microtubule cytoskeleton;7.79100085569717e-06!GO:0000245;spliceosome assembly;8.47047776073962e-06!GO:0006950;response to stress;8.90673761238643e-06!GO:0003713;transcription coactivator activity;9.70654075282774e-06!GO:0003724;RNA helicase activity;1.17213754704403e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.17839876980691e-05!GO:0006334;nucleosome assembly;1.26883862500744e-05!GO:0045454;cell redox homeostasis;1.39853236581383e-05!GO:0005769;early endosome;1.67521657073301e-05!GO:0005741;mitochondrial outer membrane;1.70076472867047e-05!GO:0000151;ubiquitin ligase complex;1.81192656445354e-05!GO:0043566;structure-specific DNA binding;1.81216004105307e-05!GO:0007264;small GTPase mediated signal transduction;1.84976838738571e-05!GO:0000279;M phase;1.8695091477943e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.10023801086662e-05!GO:0031497;chromatin assembly;2.38426998868378e-05!GO:0003714;transcription corepressor activity;2.48786986183262e-05!GO:0006613;cotranslational protein targeting to membrane;2.69193433480029e-05!GO:0043623;cellular protein complex assembly;3.00346098556174e-05!GO:0051170;nuclear import;3.07334919586735e-05!GO:0005762;mitochondrial large ribosomal subunit;3.07334919586735e-05!GO:0000315;organellar large ribosomal subunit;3.07334919586735e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.42320770794312e-05!GO:0051028;mRNA transport;3.4353540548058e-05!GO:0030029;actin filament-based process;3.56787285472927e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.71567032256609e-05!GO:0019843;rRNA binding;3.74623212330869e-05!GO:0005798;Golgi-associated vesicle;4.05345653850335e-05!GO:0051087;chaperone binding;4.8687719063716e-05!GO:0016853;isomerase activity;5.01003949367901e-05!GO:0045786;negative regulation of progression through cell cycle;5.03343576372585e-05!GO:0030867;rough endoplasmic reticulum membrane;5.49000343005905e-05!GO:0009967;positive regulation of signal transduction;5.82445949746827e-05!GO:0000314;organellar small ribosomal subunit;6.64418128027168e-05!GO:0005763;mitochondrial small ribosomal subunit;6.64418128027168e-05!GO:0006606;protein import into nucleus;7.04442981339913e-05!GO:0007010;cytoskeleton organization and biogenesis;7.0748910765501e-05!GO:0016564;transcription repressor activity;9.44605609004011e-05!GO:0009165;nucleotide biosynthetic process;0.000104169565111892!GO:0065009;regulation of a molecular function;0.000107774071181282!GO:0000139;Golgi membrane;0.000118771553505282!GO:0006091;generation of precursor metabolites and energy;0.000124372992324605!GO:0008654;phospholipid biosynthetic process;0.000134062405915847!GO:0008186;RNA-dependent ATPase activity;0.00014120906315171!GO:0016563;transcription activator activity;0.000147899095820397!GO:0003899;DNA-directed RNA polymerase activity;0.000155095904744545!GO:0048471;perinuclear region of cytoplasm;0.000168779685956212!GO:0005774;vacuolar membrane;0.000191194352725573!GO:0043021;ribonucleoprotein binding;0.000197025204644105!GO:0065007;biological regulation;0.000201625232916272!GO:0005813;centrosome;0.000203030191363663!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000236573712760616!GO:0033116;ER-Golgi intermediate compartment membrane;0.000240040521556101!GO:0016568;chromatin modification;0.000241344373702203!GO:0016859;cis-trans isomerase activity;0.000241374993198104!GO:0048518;positive regulation of biological process;0.00024784420527695!GO:0051427;hormone receptor binding;0.000249417971780761!GO:0051329;interphase of mitotic cell cycle;0.000256894468087037!GO:0051789;response to protein stimulus;0.000273507017980452!GO:0006986;response to unfolded protein;0.000273507017980452!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000321717444820249!GO:0016126;sterol biosynthetic process;0.000322185537886925!GO:0042802;identical protein binding;0.000322185537886925!GO:0008047;enzyme activator activity;0.00033870502831584!GO:0015980;energy derivation by oxidation of organic compounds;0.000348859121542175!GO:0051325;interphase;0.000407187783628407!GO:0004004;ATP-dependent RNA helicase activity;0.000408266521392305!GO:0005905;coated pit;0.000431504643102428!GO:0005885;Arp2/3 protein complex;0.000466056534646618!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000467925946925143!GO:0043681;protein import into mitochondrion;0.000512651355063036!GO:0035257;nuclear hormone receptor binding;0.000512651355063036!GO:0005048;signal sequence binding;0.000524352060125523!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000535977320422837!GO:0005765;lysosomal membrane;0.000535977320422837!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000564424278481027!GO:0031324;negative regulation of cellular metabolic process;0.000564424278481027!GO:0008250;oligosaccharyl transferase complex;0.000612875909525891!GO:0006414;translational elongation;0.000620157111226531!GO:0006612;protein targeting to membrane;0.000629244049141992!GO:0044437;vacuolar part;0.00069102637354998!GO:0030133;transport vesicle;0.000697986135343035!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000702726774365601!GO:0005815;microtubule organizing center;0.000732887859870901!GO:0008361;regulation of cell size;0.00075676373702031!GO:0008092;cytoskeletal protein binding;0.000806756409353885!GO:0006626;protein targeting to mitochondrion;0.000818629919578928!GO:0016049;cell growth;0.000823871996477157!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000891516605145632!GO:0051920;peroxiredoxin activity;0.000966001477042487!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000995317798843301!GO:0015399;primary active transmembrane transporter activity;0.000995317798843301!GO:0009892;negative regulation of metabolic process;0.00111345391597867!GO:0008632;apoptotic program;0.00114012706143952!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00114012706143952!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00116751786593828!GO:0007265;Ras protein signal transduction;0.00118549669750882!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00136883456401131!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00136883456401131!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00136883456401131!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00136883456401131!GO:0001558;regulation of cell growth;0.00153675983729189!GO:0004576;oligosaccharyl transferase activity;0.00167092110615361!GO:0031902;late endosome membrane;0.00167092110615361!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00181738072941437!GO:0030880;RNA polymerase complex;0.00181738072941437!GO:0048487;beta-tubulin binding;0.00191208682303992!GO:0018196;peptidyl-asparagine modification;0.00193895494815528!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00193895494815528!GO:0031072;heat shock protein binding;0.00196626032210299!GO:0006695;cholesterol biosynthetic process;0.00199859589156651!GO:0005819;spindle;0.00202435354118582!GO:0030027;lamellipodium;0.00206156978528762!GO:0007006;mitochondrial membrane organization and biogenesis;0.0021145210514846!GO:0015992;proton transport;0.00217287440566204!GO:0051168;nuclear export;0.00219658305127088!GO:0048468;cell development;0.00224059339675522!GO:0006818;hydrogen transport;0.00227105890563456!GO:0006891;intra-Golgi vesicle-mediated transport;0.00236203402006386!GO:0006897;endocytosis;0.00236305646657913!GO:0010324;membrane invagination;0.00236305646657913!GO:0009966;regulation of signal transduction;0.00253178420250055!GO:0007242;intracellular signaling cascade;0.00260545903962367!GO:0000059;protein import into nucleus, docking;0.00276923575553876!GO:0043488;regulation of mRNA stability;0.00298502526826133!GO:0043487;regulation of RNA stability;0.00298502526826133!GO:0006402;mRNA catabolic process;0.00300926943595768!GO:0001726;ruffle;0.00308638631129907!GO:0006839;mitochondrial transport;0.00317808855238738!GO:0030663;COPI coated vesicle membrane;0.00322899458986408!GO:0030126;COPI vesicle coat;0.00322899458986408!GO:0019222;regulation of metabolic process;0.00324426088121967!GO:0005791;rough endoplasmic reticulum;0.00338466056184391!GO:0007040;lysosome organization and biogenesis;0.00355794051188158!GO:0003729;mRNA binding;0.00358290029418222!GO:0006401;RNA catabolic process;0.00366970930469697!GO:0006650;glycerophospholipid metabolic process;0.00370183909590082!GO:0006979;response to oxidative stress;0.00377682774986135!GO:0016197;endosome transport;0.00386134746673763!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00396361565032422!GO:0000428;DNA-directed RNA polymerase complex;0.00396361565032422!GO:0008139;nuclear localization sequence binding;0.00405253471187555!GO:0044262;cellular carbohydrate metabolic process;0.00409721939709867!GO:0005096;GTPase activator activity;0.00413948822389306!GO:0030658;transport vesicle membrane;0.00428773498861925!GO:0051101;regulation of DNA binding;0.004292484541441!GO:0008154;actin polymerization and/or depolymerization;0.0044368019692787!GO:0046474;glycerophospholipid biosynthetic process;0.00444985548063963!GO:0048500;signal recognition particle;0.00444985548063963!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0045580862444573!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0045580862444573!GO:0000786;nucleosome;0.00463462504593623!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00467079412619829!GO:0006509;membrane protein ectodomain proteolysis;0.00467079412619829!GO:0033619;membrane protein proteolysis;0.00467079412619829!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00467079412619829!GO:0051252;regulation of RNA metabolic process;0.00467079412619829!GO:0043065;positive regulation of apoptosis;0.00469745715789945!GO:0030041;actin filament polymerization;0.00496057550201596!GO:0050790;regulation of catalytic activity;0.00497005808029181!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0049754628045173!GO:0015002;heme-copper terminal oxidase activity;0.0049754628045173!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0049754628045173!GO:0004129;cytochrome-c oxidase activity;0.0049754628045173!GO:0030659;cytoplasmic vesicle membrane;0.00516519124289293!GO:0046483;heterocycle metabolic process;0.00520460378964584!GO:0046467;membrane lipid biosynthetic process;0.00536334857746974!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00539067015127718!GO:0006383;transcription from RNA polymerase III promoter;0.00540918567921463!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00557010701773116!GO:0022890;inorganic cation transmembrane transporter activity;0.00566683720776687!GO:0043068;positive regulation of programmed cell death;0.00573095225217073!GO:0005637;nuclear inner membrane;0.00574673002880342!GO:0017166;vinculin binding;0.00580701217873067!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00580701217873067!GO:0005684;U2-dependent spliceosome;0.0058746513051167!GO:0006643;membrane lipid metabolic process;0.00594449119889224!GO:0046489;phosphoinositide biosynthetic process;0.00601419617426357!GO:0006261;DNA-dependent DNA replication;0.00651714191359952!GO:0030521;androgen receptor signaling pathway;0.00655137312131676!GO:0005869;dynactin complex;0.00655137312131676!GO:0030118;clathrin coat;0.00655137312131676!GO:0030137;COPI-coated vesicle;0.00691590695436946!GO:0005657;replication fork;0.00700143691143282!GO:0003684;damaged DNA binding;0.00700389461824867!GO:0040008;regulation of growth;0.00700389461824867!GO:0043492;ATPase activity, coupled to movement of substances;0.00712674685060628!GO:0015631;tubulin binding;0.00722699339747604!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00764104266567195!GO:0008383;manganese superoxide dismutase activity;0.00770390996635341!GO:0001315;age-dependent response to reactive oxygen species;0.00770390996635341!GO:0005874;microtubule;0.00797669415196472!GO:0030134;ER to Golgi transport vesicle;0.00799802634335551!GO:0048660;regulation of smooth muscle cell proliferation;0.00821364329332824!GO:0051098;regulation of binding;0.00824523557031904!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00840009628023194!GO:0008283;cell proliferation;0.00846100535920425!GO:0045045;secretory pathway;0.00848975348830248!GO:0007051;spindle organization and biogenesis;0.00851169202777751!GO:0007033;vacuole organization and biogenesis;0.00851949630214379!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0088943864496398!GO:0051059;NF-kappaB binding;0.00902651416760092!GO:0006352;transcription initiation;0.00913321582203563!GO:0008033;tRNA processing;0.00917652846255199!GO:0008610;lipid biosynthetic process;0.0092645842021215!GO:0030660;Golgi-associated vesicle membrane;0.009409967216228!GO:0006740;NADPH regeneration;0.009409967216228!GO:0006098;pentose-phosphate shunt;0.009409967216228!GO:0008637;apoptotic mitochondrial changes;0.00944200230409706!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00944200230409706!GO:0045047;protein targeting to ER;0.00944200230409706!GO:0016363;nuclear matrix;0.00968437256874355!GO:0007162;negative regulation of cell adhesion;0.00990129175348989!GO:0008312;7S RNA binding;0.0104270990785008!GO:0051540;metal cluster binding;0.0104270990785008!GO:0051536;iron-sulfur cluster binding;0.0104270990785008!GO:0030127;COPII vesicle coat;0.0104270990785008!GO:0012507;ER to Golgi transport vesicle membrane;0.0104270990785008!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0105857169871581!GO:0044452;nucleolar part;0.0106422713464608!GO:0030833;regulation of actin filament polymerization;0.01064400503947!GO:0001944;vasculature development;0.0106888303969883!GO:0044433;cytoplasmic vesicle part;0.0107780149804814!GO:0006778;porphyrin metabolic process;0.0113952606948267!GO:0033013;tetrapyrrole metabolic process;0.0113952606948267!GO:0043284;biopolymer biosynthetic process;0.0114061812500958!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0114209255194437!GO:0016481;negative regulation of transcription;0.0115504589684228!GO:0008094;DNA-dependent ATPase activity;0.0122299408099227!GO:0007034;vacuolar transport;0.01230238172798!GO:0006595;polyamine metabolic process;0.0126723521947566!GO:0050811;GABA receptor binding;0.0126852242317472!GO:0030132;clathrin coat of coated pit;0.0129638337999072!GO:0050662;coenzyme binding;0.0129638337999072!GO:0006417;regulation of translation;0.0129638337999072!GO:0005083;small GTPase regulator activity;0.0132909061519727!GO:0000082;G1/S transition of mitotic cell cycle;0.0135056553842736!GO:0012506;vesicle membrane;0.0135456981786948!GO:0015036;disulfide oxidoreductase activity;0.0135456981786948!GO:0003711;transcription elongation regulator activity;0.0138164427372022!GO:0008180;signalosome;0.0139283374577583!GO:0016251;general RNA polymerase II transcription factor activity;0.0141490862110685!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0144896241090093!GO:0022407;regulation of cell-cell adhesion;0.0146820272591861!GO:0007050;cell cycle arrest;0.0149231421289131!GO:0003746;translation elongation factor activity;0.0149582211553757!GO:0005832;chaperonin-containing T-complex;0.0150580564561658!GO:0043022;ribosome binding;0.0150850460521639!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0150850460521639!GO:0007266;Rho protein signal transduction;0.0152525450591217!GO:0006611;protein export from nucleus;0.0158404419859341!GO:0008064;regulation of actin polymerization and/or depolymerization;0.015874841463596!GO:0051128;regulation of cellular component organization and biogenesis;0.015874841463596!GO:0033673;negative regulation of kinase activity;0.0159069935404763!GO:0006469;negative regulation of protein kinase activity;0.0159069935404763!GO:0040011;locomotion;0.0159521113537858!GO:0030176;integral to endoplasmic reticulum membrane;0.0162600200309776!GO:0022408;negative regulation of cell-cell adhesion;0.0171555379719262!GO:0003678;DNA helicase activity;0.0171762602184652!GO:0000075;cell cycle checkpoint;0.0175890723104066!GO:0007088;regulation of mitosis;0.017715340815745!GO:0007021;tubulin folding;0.017775117357593!GO:0031901;early endosome membrane;0.0180087638712973!GO:0008538;proteasome activator activity;0.0181552009376495!GO:0051270;regulation of cell motility;0.0182912971496763!GO:0006672;ceramide metabolic process;0.0183285394060549!GO:0051348;negative regulation of transferase activity;0.0183524446071684!GO:0035258;steroid hormone receptor binding;0.0189699604533236!GO:0006497;protein amino acid lipidation;0.0190931165927634!GO:0003690;double-stranded DNA binding;0.0191567719456773!GO:0006289;nucleotide-excision repair;0.0192691026952242!GO:0000049;tRNA binding;0.0195705760259581!GO:0043433;negative regulation of transcription factor activity;0.0198692052037517!GO:0007041;lysosomal transport;0.0201769186454355!GO:0051539;4 iron, 4 sulfur cluster binding;0.0201952363520946!GO:0008234;cysteine-type peptidase activity;0.0205972745010643!GO:0046426;negative regulation of JAK-STAT cascade;0.0208116738060038!GO:0046519;sphingoid metabolic process;0.0210301567511497!GO:0030695;GTPase regulator activity;0.0212822475948886!GO:0001568;blood vessel development;0.021558267446521!GO:0000209;protein polyubiquitination;0.0220253942316872!GO:0030119;AP-type membrane coat adaptor complex;0.0220571793413826!GO:0042168;heme metabolic process;0.0225050434771038!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.022600870052378!GO:0040012;regulation of locomotion;0.0226479330605565!GO:0006644;phospholipid metabolic process;0.0227799456465663!GO:0032508;DNA duplex unwinding;0.0228402143170913!GO:0032392;DNA geometric change;0.0228402143170913!GO:0030518;steroid hormone receptor signaling pathway;0.0230132678997182!GO:0030100;regulation of endocytosis;0.0237281935667188!GO:0008320;protein transmembrane transporter activity;0.024049148668628!GO:0016272;prefoldin complex;0.0243342098401312!GO:0016408;C-acyltransferase activity;0.0248008530006672!GO:0035035;histone acetyltransferase binding;0.0251021334283925!GO:0006749;glutathione metabolic process;0.0251021334283925!GO:0031625;ubiquitin protein ligase binding;0.0251798577473744!GO:0045941;positive regulation of transcription;0.0251987746149968!GO:0006917;induction of apoptosis;0.0252043232853073!GO:0043281;regulation of caspase activity;0.0257151018056297!GO:0031124;mRNA 3'-end processing;0.0258158766742226!GO:0048659;smooth muscle cell proliferation;0.0263149068513599!GO:0001953;negative regulation of cell-matrix adhesion;0.0268504996827737!GO:0047485;protein N-terminus binding;0.0270324714298476!GO:0003756;protein disulfide isomerase activity;0.0275874048563085!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0275874048563085!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0279018915125533!GO:0006405;RNA export from nucleus;0.0279466267534996!GO:0005669;transcription factor TFIID complex;0.027957937440537!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0283256454447028!GO:0004197;cysteine-type endopeptidase activity;0.0283634375465825!GO:0006302;double-strand break repair;0.0286771239716387!GO:0019752;carboxylic acid metabolic process;0.0287525704495513!GO:0030384;phosphoinositide metabolic process;0.0290525299782388!GO:0001836;release of cytochrome c from mitochondria;0.029423414276492!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0295578169709437!GO:0006082;organic acid metabolic process;0.0298064222290327!GO:0045926;negative regulation of growth;0.0299077401935979!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0306265333573827!GO:0033043;regulation of organelle organization and biogenesis;0.0306265333573827!GO:0005092;GDP-dissociation inhibitor activity;0.0310830967656144!GO:0030032;lamellipodium biogenesis;0.0311410904034409!GO:0004177;aminopeptidase activity;0.0311703358185294!GO:0012502;induction of programmed cell death;0.0323843212823902!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0326107229531185!GO:0032940;secretion by cell;0.0329080494834946!GO:0046966;thyroid hormone receptor binding;0.0330831335857784!GO:0006376;mRNA splice site selection;0.0333174948017477!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0333174948017477!GO:0000339;RNA cap binding;0.0333579294366661!GO:0031529;ruffle organization and biogenesis;0.0334680741688022!GO:0030155;regulation of cell adhesion;0.0336037040721975!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0339198604268435!GO:0030131;clathrin adaptor complex;0.0340408156313744!GO:0006220;pyrimidine nucleotide metabolic process;0.0345922491508917!GO:0046822;regulation of nucleocytoplasmic transport;0.036235300955533!GO:0004674;protein serine/threonine kinase activity;0.0363437397523337!GO:0042158;lipoprotein biosynthetic process;0.0363437397523337!GO:0006268;DNA unwinding during replication;0.0364687950544739!GO:0005784;translocon complex;0.0365089131334172!GO:0006378;mRNA polyadenylation;0.0367096308635033!GO:0006779;porphyrin biosynthetic process;0.0374465923274976!GO:0033014;tetrapyrrole biosynthetic process;0.0374465923274976!GO:0042585;germinal vesicle;0.0375673007374129!GO:0033559;unsaturated fatty acid metabolic process;0.0379341026612349!GO:0006636;unsaturated fatty acid biosynthetic process;0.0379341026612349!GO:0009615;response to virus;0.0380561185716422!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.038377025357746!GO:0006516;glycoprotein catabolic process;0.0386891235478784!GO:0045893;positive regulation of transcription, DNA-dependent;0.0391313844401054!GO:0032984;macromolecular complex disassembly;0.0399593928088802!GO:0005099;Ras GTPase activator activity;0.0400362482931043!GO:0051287;NAD binding;0.0402373716875541!GO:0045792;negative regulation of cell size;0.0411465920032271!GO:0004527;exonuclease activity;0.041170243366739!GO:0019206;nucleoside kinase activity;0.0420272599552563!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.042072094610242!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.042072094610242!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.042072094610242!GO:0042987;amyloid precursor protein catabolic process;0.042072094610242!GO:0030125;clathrin vesicle coat;0.0428440148877938!GO:0030665;clathrin coated vesicle membrane;0.0428440148877938!GO:0004532;exoribonuclease activity;0.043258653890098!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.043258653890098!GO:0030865;cortical cytoskeleton organization and biogenesis;0.043258653890098!GO:0001952;regulation of cell-matrix adhesion;0.0437414507783807!GO:0006739;NADP metabolic process;0.0438987153577338!GO:0030274;LIM domain binding;0.0438987153577338!GO:0045185;maintenance of protein localization;0.0442148091736263!GO:0006506;GPI anchor biosynthetic process;0.0447772812949325!GO:0016301;kinase activity;0.0451756922330404!GO:0030508;thiol-disulfide exchange intermediate activity;0.0452868774357318!GO:0006144;purine base metabolic process;0.0454721299074642!GO:0030308;negative regulation of cell growth;0.045736588374974!GO:0051336;regulation of hydrolase activity;0.0468449446915597!GO:0006007;glucose catabolic process;0.0475975708965765!GO:0005862;muscle thin filament tropomyosin;0.0481540641730869!GO:0005938;cell cortex;0.0483476028687023!GO:0006919;caspase activation;0.0492519673335333!GO:0031970;organelle envelope lumen;0.0495334260729467!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0496194621866152!GO:0009889;regulation of biosynthetic process;0.0496194621866152!GO:0005758;mitochondrial intermembrane space;0.0497228482826569 | |||
|sample_id=12260 | |sample_id=12260 | ||
|sample_note=1577 | |sample_note=1577 | ||
| Line 75: | Line 105: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=lymph node | |sample_tissue=lymph node | ||
|time= 00hr00min | |||
|timecourse=Lymphatic_EC_response_to_VEGFC | |||
|top_motifs=SOX{8,9,10}:1.71607647711;NFATC1..3:1.69363783557;PAX1,9:1.37136539506;TLX1..3_NFIC{dimer}:1.12539910689;IKZF1:1.11995552474;RXR{A,B,G}:1.11286604536;STAT2,4,6:1.0737116145;ELF1,2,4:0.827165551943;PAX6:0.814439484527;bHLH_family:0.810000821146;GFI1B:0.76733563299;SOX5:0.754947307317;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.743622323261;ETS1,2:0.690813554394;GZF1:0.672914325048;HBP1_HMGB_SSRP1_UBTF:0.652198003034;TFAP4:0.647692101115;TP53:0.638688352138;NFKB1_REL_RELA:0.611948218137;IKZF2:0.58774161311;SOX2:0.580461771276;CDC5L:0.55381482346;XCPE1{core}:0.545704762908;FOXQ1:0.521002951401;IRF1,2:0.515215146637;LHX3,4:0.498575978282;TBP:0.48871114635;ADNP_IRX_SIX_ZHX:0.466371517485;TEAD1:0.458873297013;LEF1_TCF7_TCF7L1,2:0.426809934939;AR:0.420339614973;SREBF1,2:0.418025997298;SOX17:0.407078849501;HAND1,2:0.399404791976;ZNF423:0.399229924936;ZNF238:0.380531296499;SPIB:0.379543158389;POU3F1..4:0.376279308896;GATA6:0.359205145943;FOXL1:0.348165070636;NANOG{mouse}:0.345781076452;EBF1:0.338784199613;ZBTB6:0.327057749612;ARID5B:0.322458665033;HES1:0.318296721423;HNF4A_NR2F1,2:0.304066426299;T:0.301149769371;MYOD1:0.298159819677;FOX{I1,J2}:0.270708036519;SPZ1:0.262521588816;PAX8:0.257378415931;HMGA1,2:0.254837821338;UFEwm:0.252846706699;SP1:0.241132184715;NKX2-3_NKX2-5:0.219005820833;PRDM1:0.207712752905;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.200842152046;SRF:0.158454003388;YY1:0.138551992294;FOX{F1,F2,J1}:0.133205692655;NR3C1:0.131709207386;EVI1:0.131087052417;HOX{A5,B5}:0.118733999542;TAL1_TCF{3,4,12}:0.116301861116;E2F1..5:0.107867374681;ALX4:0.0977253300048;ZNF148:0.0963092780427;NFE2:0.0666685470026;REST:0.0627717554664;MEF2{A,B,C,D}:0.0592964081381;SMAD1..7,9:0.0541524886422;ZIC1..3:0.0194284825265;PBX1:0.00541631490142;NR5A1,2:-0.00651760331976;ATF2:-0.0141052422258;FOS_FOS{B,L1}_JUN{B,D}:-0.0199530460479;GTF2A1,2:-0.0215969972115;MTE{core}:-0.0319785238456;NFY{A,B,C}:-0.0513558604855;ZFP161:-0.058809452508;IRF7:-0.0598036307355;NANOG:-0.0604716378349;BACH2:-0.0617988091942;TOPORS:-0.0641416392356;MAZ:-0.0688488318198;ALX1:-0.084077962111;FOSL2:-0.085199537066;SPI1:-0.0929799436561;FOXA2:-0.0958637242715;MYB:-0.100854867383;FOX{D1,D2}:-0.116186962185;LMO2:-0.138367721631;GCM1,2:-0.149318887903;NFE2L1:-0.152942632648;HNF1A:-0.156983195464;POU2F1..3:-0.160776083967;GFI1:-0.163408305933;TFAP2{A,C}:-0.164041082006;TFAP2B:-0.164287914562;MED-1{core}:-0.16494646191;BPTF:-0.168662691952;HIC1:-0.174946399445;HSF1,2:-0.176584538207;TEF:-0.184585351977;GATA4:-0.186798442216;DMAP1_NCOR{1,2}_SMARC:-0.20139276119;NFE2L2:-0.202755868144;ZNF143:-0.214401650722;JUN:-0.217791666811;CEBPA,B_DDIT3:-0.232656069109;EN1,2:-0.236083935313;PDX1:-0.246518975203;STAT1,3:-0.250075798715;NR6A1:-0.250845742762;ONECUT1,2:-0.256391163287;NHLH1,2:-0.279615801272;NKX2-2,8:-0.292478880856;STAT5{A,B}:-0.296716861858;RXRA_VDR{dimer}:-0.317362381264;GTF2I:-0.322867806205;HLF:-0.338722387832;FOXO1,3,4:-0.34077711085;MYBL2:-0.342636262857;NRF1:-0.355094745503;CUX2:-0.359086323222;TGIF1:-0.372054487306;NKX3-2:-0.373582731629;PAX5:-0.373665713712;MTF1:-0.375876360188;FOXM1:-0.381480861613;PITX1..3:-0.386490451284;PPARG:-0.393245716;HIF1A:-0.394026705082;ATF4:-0.395155059455;TFDP1:-0.407963829372;FOXD3:-0.411162744729;ATF6:-0.413069155208;ELK1,4_GABP{A,B1}:-0.419199738735;VSX1,2:-0.431360477103;CREB1:-0.433824977054;OCT4_SOX2{dimer}:-0.435748415513;RBPJ:-0.44391996874;ATF5_CREB3:-0.446749451359;POU1F1:-0.449186456643;ESRRA:-0.456536804211;RORA:-0.462700499874;NFIX:-0.463165473701;PAX2:-0.466669106721;POU6F1:-0.470740857177;SNAI1..3:-0.480915289877;XBP1:-0.489584010525;EGR1..3:-0.500807943205;KLF4:-0.532413221421;RFX1:-0.537895944628;GLI1..3:-0.55068438038;PATZ1:-0.574819081914;ZNF384:-0.582540806089;MYFfamily:-0.596542679504;CRX:-0.604751418691;ZEB1:-0.606193032648;TLX2:-0.616231277366;NR1H4:-0.618797127642;RREB1:-0.666083995061;AHR_ARNT_ARNT2:-0.666172145436;ESR1:-0.669801830486;FOXP1:-0.670628690873;RUNX1..3:-0.684496601679;PRRX1,2:-0.693650686992;NKX2-1,4:-0.698454182291;PAX4:-0.700501279774;TFCP2:-0.714045396281;NFIL3:-0.71986838598;CDX1,2,4:-0.733404102966;MAFB:-0.754182536893;AIRE:-0.770901683625;HMX1:-0.776932579131;FOXN1:-0.80185667341;DBP:-0.824214878007;BREu{core}:-0.84828695307;POU5F1:-0.854513817357;PAX3,7:-0.904958571587;RFX2..5_RFXANK_RFXAP:-0.921365729713;MZF1:-0.943352261466;EP300:-0.966652437019;ZBTB16:-0.997964524008;FOXP3:-1.00404265982;NKX3-1:-1.05463806319;NKX6-1,2:-1.05758366911;HOXA9_MEIS1:-1.05776265324;TBX4,5:-1.08372439217;HOX{A6,A7,B6,B7}:-1.15961954883;HOX{A4,D4}:-1.33226092549 | |top_motifs=SOX{8,9,10}:1.71607647711;NFATC1..3:1.69363783557;PAX1,9:1.37136539506;TLX1..3_NFIC{dimer}:1.12539910689;IKZF1:1.11995552474;RXR{A,B,G}:1.11286604536;STAT2,4,6:1.0737116145;ELF1,2,4:0.827165551943;PAX6:0.814439484527;bHLH_family:0.810000821146;GFI1B:0.76733563299;SOX5:0.754947307317;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.743622323261;ETS1,2:0.690813554394;GZF1:0.672914325048;HBP1_HMGB_SSRP1_UBTF:0.652198003034;TFAP4:0.647692101115;TP53:0.638688352138;NFKB1_REL_RELA:0.611948218137;IKZF2:0.58774161311;SOX2:0.580461771276;CDC5L:0.55381482346;XCPE1{core}:0.545704762908;FOXQ1:0.521002951401;IRF1,2:0.515215146637;LHX3,4:0.498575978282;TBP:0.48871114635;ADNP_IRX_SIX_ZHX:0.466371517485;TEAD1:0.458873297013;LEF1_TCF7_TCF7L1,2:0.426809934939;AR:0.420339614973;SREBF1,2:0.418025997298;SOX17:0.407078849501;HAND1,2:0.399404791976;ZNF423:0.399229924936;ZNF238:0.380531296499;SPIB:0.379543158389;POU3F1..4:0.376279308896;GATA6:0.359205145943;FOXL1:0.348165070636;NANOG{mouse}:0.345781076452;EBF1:0.338784199613;ZBTB6:0.327057749612;ARID5B:0.322458665033;HES1:0.318296721423;HNF4A_NR2F1,2:0.304066426299;T:0.301149769371;MYOD1:0.298159819677;FOX{I1,J2}:0.270708036519;SPZ1:0.262521588816;PAX8:0.257378415931;HMGA1,2:0.254837821338;UFEwm:0.252846706699;SP1:0.241132184715;NKX2-3_NKX2-5:0.219005820833;PRDM1:0.207712752905;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.200842152046;SRF:0.158454003388;YY1:0.138551992294;FOX{F1,F2,J1}:0.133205692655;NR3C1:0.131709207386;EVI1:0.131087052417;HOX{A5,B5}:0.118733999542;TAL1_TCF{3,4,12}:0.116301861116;E2F1..5:0.107867374681;ALX4:0.0977253300048;ZNF148:0.0963092780427;NFE2:0.0666685470026;REST:0.0627717554664;MEF2{A,B,C,D}:0.0592964081381;SMAD1..7,9:0.0541524886422;ZIC1..3:0.0194284825265;PBX1:0.00541631490142;NR5A1,2:-0.00651760331976;ATF2:-0.0141052422258;FOS_FOS{B,L1}_JUN{B,D}:-0.0199530460479;GTF2A1,2:-0.0215969972115;MTE{core}:-0.0319785238456;NFY{A,B,C}:-0.0513558604855;ZFP161:-0.058809452508;IRF7:-0.0598036307355;NANOG:-0.0604716378349;BACH2:-0.0617988091942;TOPORS:-0.0641416392356;MAZ:-0.0688488318198;ALX1:-0.084077962111;FOSL2:-0.085199537066;SPI1:-0.0929799436561;FOXA2:-0.0958637242715;MYB:-0.100854867383;FOX{D1,D2}:-0.116186962185;LMO2:-0.138367721631;GCM1,2:-0.149318887903;NFE2L1:-0.152942632648;HNF1A:-0.156983195464;POU2F1..3:-0.160776083967;GFI1:-0.163408305933;TFAP2{A,C}:-0.164041082006;TFAP2B:-0.164287914562;MED-1{core}:-0.16494646191;BPTF:-0.168662691952;HIC1:-0.174946399445;HSF1,2:-0.176584538207;TEF:-0.184585351977;GATA4:-0.186798442216;DMAP1_NCOR{1,2}_SMARC:-0.20139276119;NFE2L2:-0.202755868144;ZNF143:-0.214401650722;JUN:-0.217791666811;CEBPA,B_DDIT3:-0.232656069109;EN1,2:-0.236083935313;PDX1:-0.246518975203;STAT1,3:-0.250075798715;NR6A1:-0.250845742762;ONECUT1,2:-0.256391163287;NHLH1,2:-0.279615801272;NKX2-2,8:-0.292478880856;STAT5{A,B}:-0.296716861858;RXRA_VDR{dimer}:-0.317362381264;GTF2I:-0.322867806205;HLF:-0.338722387832;FOXO1,3,4:-0.34077711085;MYBL2:-0.342636262857;NRF1:-0.355094745503;CUX2:-0.359086323222;TGIF1:-0.372054487306;NKX3-2:-0.373582731629;PAX5:-0.373665713712;MTF1:-0.375876360188;FOXM1:-0.381480861613;PITX1..3:-0.386490451284;PPARG:-0.393245716;HIF1A:-0.394026705082;ATF4:-0.395155059455;TFDP1:-0.407963829372;FOXD3:-0.411162744729;ATF6:-0.413069155208;ELK1,4_GABP{A,B1}:-0.419199738735;VSX1,2:-0.431360477103;CREB1:-0.433824977054;OCT4_SOX2{dimer}:-0.435748415513;RBPJ:-0.44391996874;ATF5_CREB3:-0.446749451359;POU1F1:-0.449186456643;ESRRA:-0.456536804211;RORA:-0.462700499874;NFIX:-0.463165473701;PAX2:-0.466669106721;POU6F1:-0.470740857177;SNAI1..3:-0.480915289877;XBP1:-0.489584010525;EGR1..3:-0.500807943205;KLF4:-0.532413221421;RFX1:-0.537895944628;GLI1..3:-0.55068438038;PATZ1:-0.574819081914;ZNF384:-0.582540806089;MYFfamily:-0.596542679504;CRX:-0.604751418691;ZEB1:-0.606193032648;TLX2:-0.616231277366;NR1H4:-0.618797127642;RREB1:-0.666083995061;AHR_ARNT_ARNT2:-0.666172145436;ESR1:-0.669801830486;FOXP1:-0.670628690873;RUNX1..3:-0.684496601679;PRRX1,2:-0.693650686992;NKX2-1,4:-0.698454182291;PAX4:-0.700501279774;TFCP2:-0.714045396281;NFIL3:-0.71986838598;CDX1,2,4:-0.733404102966;MAFB:-0.754182536893;AIRE:-0.770901683625;HMX1:-0.776932579131;FOXN1:-0.80185667341;DBP:-0.824214878007;BREu{core}:-0.84828695307;POU5F1:-0.854513817357;PAX3,7:-0.904958571587;RFX2..5_RFXANK_RFXAP:-0.921365729713;MZF1:-0.943352261466;EP300:-0.966652437019;ZBTB16:-0.997964524008;FOXP3:-1.00404265982;NKX3-1:-1.05463806319;NKX6-1,2:-1.05758366911;HOXA9_MEIS1:-1.05776265324;TBX4,5:-1.08372439217;HOX{A6,A7,B6,B7}:-1.15961954883;HOX{A4,D4}:-1.33226092549 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12260-130A1;search_select_hide=table117:FF:12260-130A1 | |||
}} | }} | ||
Latest revision as of 18:37, 4 June 2020
| Name: | Lymphatic Endothelial cells response to VEGFC |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11936 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11936
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11936
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.145 |
| 10 | 10 | 0.999 |
| 100 | 100 | 0.104 |
| 101 | 101 | 0.251 |
| 102 | 102 | 0.942 |
| 103 | 103 | 0.221 |
| 104 | 104 | 0.744 |
| 105 | 105 | 0.767 |
| 106 | 106 | 0.0229 |
| 107 | 107 | 0.0506 |
| 108 | 108 | 0.156 |
| 109 | 109 | 0.0247 |
| 11 | 11 | 0.0386 |
| 110 | 110 | 0.0288 |
| 111 | 111 | 0.594 |
| 112 | 112 | 0.531 |
| 113 | 113 | 0.291 |
| 114 | 114 | 0.442 |
| 115 | 115 | 0.839 |
| 116 | 116 | 0.387 |
| 117 | 117 | 0.221 |
| 118 | 118 | 0.851 |
| 119 | 119 | 0.0276 |
| 12 | 12 | 0.997 |
| 120 | 120 | 0.0487 |
| 121 | 121 | 0.515 |
| 122 | 122 | 0.768 |
| 123 | 123 | 0.202 |
| 124 | 124 | 0.0285 |
| 125 | 125 | 0.488 |
| 126 | 126 | 0.757 |
| 127 | 127 | 0.399 |
| 128 | 128 | 0.89 |
| 129 | 129 | 0.331 |
| 13 | 13 | 0.0164 |
| 130 | 130 | 0.447 |
| 131 | 131 | 0.273 |
| 132 | 132 | 0.221 |
| 133 | 133 | 0.854 |
| 134 | 134 | 0.653 |
| 135 | 135 | 0.0808 |
| 136 | 136 | 0.352 |
| 137 | 137 | 0.371 |
| 138 | 138 | 0.977 |
| 139 | 139 | 0.916 |
| 14 | 14 | 0.895 |
| 140 | 140 | 0.255 |
| 141 | 141 | 0.133 |
| 142 | 142 | 0.473 |
| 143 | 143 | 0.0427 |
| 144 | 144 | 0.995 |
| 145 | 145 | 0.0898 |
| 146 | 146 | 0.254 |
| 147 | 147 | 0.0658 |
| 148 | 148 | 0.462 |
| 149 | 149 | 0.0275 |
| 15 | 15 | 0.818 |
| 150 | 150 | 0.239 |
| 151 | 151 | 0.517 |
| 152 | 152 | 0.0157 |
| 153 | 153 | 0.202 |
| 154 | 154 | 0.0619 |
| 155 | 155 | 0.247 |
| 156 | 156 | 0.2 |
| 157 | 157 | 0.0459 |
| 158 | 158 | 0.111 |
| 159 | 159 | 0.187 |
| 16 | 16 | 0.344 |
| 160 | 160 | 0.0448 |
| 161 | 161 | 0.894 |
| 162 | 162 | 0.992 |
| 163 | 163 | 0.737 |
| 164 | 164 | 0.388 |
| 165 | 165 | 0.572 |
| 166 | 166 | 0.707 |
| 167 | 167 | 0.447 |
| 168 | 168 | 0.0671 |
| 169 | 169 | 0.0342 |
| 17 | 17 | 0.0958 |
| 18 | 18 | 0.855 |
| 19 | 19 | 0.0702 |
| 2 | 2 | 0.564 |
| 20 | 20 | 0.875 |
| 21 | 21 | 0.735 |
| 22 | 22 | 0.267 |
| 23 | 23 | 0.265 |
| 24 | 24 | 0.531 |
| 25 | 25 | 0.334 |
| 26 | 26 | 0.543 |
| 27 | 27 | 0.205 |
| 28 | 28 | 0.22 |
| 29 | 29 | 0.303 |
| 3 | 3 | 0.726 |
| 30 | 30 | 0.678 |
| 31 | 31 | 0.546 |
| 32 | 32 | 0.352 |
| 33 | 33 | 0.0381 |
| 34 | 34 | 0.471 |
| 35 | 35 | 0.719 |
| 36 | 36 | 0.00668 |
| 37 | 37 | 0.0749 |
| 38 | 38 | 0.107 |
| 39 | 39 | 0.475 |
| 4 | 4 | 0.731 |
| 40 | 40 | 3.92975e-4 |
| 41 | 41 | 0.128 |
| 42 | 42 | 0.807 |
| 43 | 43 | 0.631 |
| 44 | 44 | 0.276 |
| 45 | 45 | 0.345 |
| 46 | 46 | 0.359 |
| 47 | 47 | 0.277 |
| 48 | 48 | 0.0852 |
| 49 | 49 | 0.874 |
| 5 | 5 | 0.406 |
| 50 | 50 | 0.333 |
| 51 | 51 | 0.536 |
| 52 | 52 | 0.979 |
| 53 | 53 | 0.823 |
| 54 | 54 | 0.66 |
| 55 | 55 | 0.761 |
| 56 | 56 | 0.484 |
| 57 | 57 | 0.614 |
| 58 | 58 | 0.382 |
| 59 | 59 | 0.122 |
| 6 | 6 | 0.176 |
| 60 | 60 | 0.741 |
| 61 | 61 | 0.691 |
| 62 | 62 | 0.69 |
| 63 | 63 | 0.22 |
| 64 | 64 | 0.734 |
| 65 | 65 | 0.0855 |
| 66 | 66 | 0.58 |
| 67 | 67 | 0.358 |
| 68 | 68 | 0.54 |
| 69 | 69 | 0.969 |
| 7 | 7 | 0.878 |
| 70 | 70 | 0.778 |
| 71 | 71 | 0.268 |
| 72 | 72 | 0.402 |
| 73 | 73 | 0.00226 |
| 74 | 74 | 0.434 |
| 75 | 75 | 0.192 |
| 76 | 76 | 0.614 |
| 77 | 77 | 0.274 |
| 78 | 78 | 0.0618 |
| 79 | 79 | 0.236 |
| 8 | 8 | 0.0235 |
| 80 | 80 | 0.933 |
| 81 | 81 | 0.59 |
| 82 | 82 | 0.335 |
| 83 | 83 | 0.534 |
| 84 | 84 | 0.518 |
| 85 | 85 | 0.451 |
| 86 | 86 | 0.789 |
| 87 | 87 | 0.0188 |
| 88 | 88 | 0.845 |
| 89 | 89 | 0.213 |
| 9 | 9 | 0.669 |
| 90 | 90 | 0.825 |
| 91 | 91 | 0.676 |
| 92 | 92 | 0.144 |
| 93 | 93 | 0.866 |
| 94 | 94 | 0.569 |
| 95 | 95 | 0.00835 |
| 96 | 96 | 0.705 |
| 97 | 97 | 0.44 |
| 98 | 98 | 0.789 |
| 99 | 99 | 0.0233 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11936
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000410 human Lymphatic Endothelial cells 0min after VEGFC treatment sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000049 (human lymphatic endothelial cell sample)
0000341 (Vegfc treatment sample)
0000344 (0 minute sample)
0000410 (human Lymphatic Endothelial cells 0min after VEGFC treatment sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)
