FF:14305-155C3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005618 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008040;DRR008912;DRZ000337;DRZ001722;DRZ011687;DRZ013072 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000251,FF:0000406,FF:0000670 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14305-155C3 | |id=FF:14305-155C3 | ||
|is_a= | |is_a=FF:0000670 | ||
|is_obsolete= | |||
|library_id=CNhs12398 | |||
|library_id_phase_based=2:CNhs12398 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14305 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14305 | |||
|name=Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction) | |name=Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12398,LSID914,release011,COMPLETED | |profile_hcage=CNhs12398,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0659711848606685,0,0,0,0,-0.0283756603650487,0,-0.145419762472177,0.555971844619315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161603097868696,0,0,0,0,0,1.07363325016095,0,0,0.691829850970156,0,0,0,0,0,0,0,0,0,0,0,0,0.0365719593209454,0.33560017659924,0,0,0,0,0,0,0,0.0417561637478343,0,0,0,0.233000982852579,0,0,0,0.136008621609974,0,0,0.593304727062394,0.131942369721337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131942369721337,0.182471676286958,0,0,0,0,0,-0.0755263841055255,0,0,0,-0.0605081652903823,0.103728705521256,0,0.622740902806553,0.11650049142629,0.314926108217124,0.345235142421045,0.56500048146763,0,0,0,0,0,0,0.233000982852579,0,0,0,0,0,0,0,0,0,0,0.125261652906915,0,0,0,-0.0799263177119958,-0.218342709283036,0,0,0.157938890758285,0,0,0 | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=19.7375 | |rna_weight_ug=19.7375 | ||
|sample_age=7 month old child | |sample_age=7 month old child | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.20343336213407e-212!GO:0043226;organelle;3.2579555970278e-167!GO:0043229;intracellular organelle;6.65961734103135e-167!GO:0043231;intracellular membrane-bound organelle;2.39576231173983e-162!GO:0043227;membrane-bound organelle;4.16534937372371e-162!GO:0005737;cytoplasm;1.16043710864268e-151!GO:0044422;organelle part;2.61505053323668e-126!GO:0044446;intracellular organelle part;8.35933382326344e-125!GO:0044444;cytoplasmic part;4.1661932519003e-113!GO:0044238;primary metabolic process;8.21765562214177e-76!GO:0043170;macromolecule metabolic process;3.6818636028293e-74!GO:0005515;protein binding;4.773733532258e-74!GO:0044237;cellular metabolic process;6.86147896447079e-72!GO:0032991;macromolecular complex;7.5411137664449e-71!GO:0044428;nuclear part;4.28414514615447e-62!GO:0005634;nucleus;5.66644366125928e-62!GO:0043233;organelle lumen;1.4916941633329e-58!GO:0031974;membrane-enclosed lumen;1.4916941633329e-58!GO:0003723;RNA binding;1.88800226461373e-54!GO:0030529;ribonucleoprotein complex;7.31033653443101e-53!GO:0016043;cellular component organization and biogenesis;5.23546993719219e-49!GO:0031090;organelle membrane;1.33597120164829e-47!GO:0019538;protein metabolic process;1.15279976677805e-44!GO:0043283;biopolymer metabolic process;8.62706884167465e-41!GO:0033036;macromolecule localization;5.15554566194525e-40!GO:0015031;protein transport;3.5529484861331e-39!GO:0006396;RNA processing;5.90636880214827e-39!GO:0044260;cellular macromolecule metabolic process;9.27711213483706e-39!GO:0043234;protein complex;4.39305801137856e-38!GO:0044267;cellular protein metabolic process;6.68831608990079e-38!GO:0031981;nuclear lumen;1.1960988695871e-37!GO:0008104;protein localization;1.64095506692965e-36!GO:0045184;establishment of protein localization;8.6113480595886e-36!GO:0046907;intracellular transport;9.89136535727704e-35!GO:0016071;mRNA metabolic process;1.43338269859021e-33!GO:0005739;mitochondrion;5.84471542993292e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.85371540690044e-33!GO:0010467;gene expression;4.50088050896079e-31!GO:0006412;translation;1.13987172558694e-30!GO:0006996;organelle organization and biogenesis;1.76875726410049e-30!GO:0008380;RNA splicing;9.42321867692098e-29!GO:0006397;mRNA processing;1.16526179693797e-28!GO:0009058;biosynthetic process;3.96806038594086e-28!GO:0006886;intracellular protein transport;9.84261168353166e-28!GO:0009059;macromolecule biosynthetic process;1.30796532831866e-27!GO:0043228;non-membrane-bound organelle;1.65231137724848e-27!GO:0043232;intracellular non-membrane-bound organelle;1.65231137724848e-27!GO:0005840;ribosome;7.96178542571219e-27!GO:0031967;organelle envelope;9.96281545304352e-27!GO:0031975;envelope;1.48121832704199e-26!GO:0005783;endoplasmic reticulum;2.65237874178018e-26!GO:0005829;cytosol;3.59845576217937e-26!GO:0065003;macromolecular complex assembly;8.39442452552268e-26!GO:0012505;endomembrane system;9.50318979888887e-26!GO:0000166;nucleotide binding;3.94295491189322e-25!GO:0022607;cellular component assembly;1.30248880829186e-24!GO:0005654;nucleoplasm;4.7608639616672e-24!GO:0003735;structural constituent of ribosome;9.88017683157876e-24!GO:0044429;mitochondrial part;2.16280435321147e-23!GO:0044249;cellular biosynthetic process;3.7110527784053e-23!GO:0006259;DNA metabolic process;1.11460259291734e-22!GO:0051649;establishment of cellular localization;3.48533877432934e-22!GO:0044432;endoplasmic reticulum part;4.49579390174914e-22!GO:0051641;cellular localization;4.89306190771106e-22!GO:0033279;ribosomal subunit;3.57701859877515e-21!GO:0007049;cell cycle;1.44874041137173e-20!GO:0016462;pyrophosphatase activity;1.51685392824399e-20!GO:0005794;Golgi apparatus;2.17619045446329e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.26477159759051e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.91113793627932e-20!GO:0017111;nucleoside-triphosphatase activity;3.07531089455758e-20!GO:0048770;pigment granule;3.12706335299652e-20!GO:0042470;melanosome;3.12706335299652e-20!GO:0005681;spliceosome;5.18397457722362e-20!GO:0003676;nucleic acid binding;1.66570156641838e-19!GO:0044451;nucleoplasm part;2.12976188143362e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.11798497422583e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.54232054402518e-18!GO:0032553;ribonucleotide binding;1.12003636489977e-17!GO:0032555;purine ribonucleotide binding;1.12003636489977e-17!GO:0017076;purine nucleotide binding;1.4571341433889e-17!GO:0006457;protein folding;1.98230223012779e-17!GO:0005524;ATP binding;4.03524715180602e-17!GO:0016874;ligase activity;4.14877969368228e-17!GO:0032559;adenyl ribonucleotide binding;1.97689145463359e-16!GO:0022402;cell cycle process;2.16705698290285e-16!GO:0016070;RNA metabolic process;3.89968478942827e-16!GO:0030554;adenyl nucleotide binding;4.50571291572504e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.96333080464571e-15!GO:0048193;Golgi vesicle transport;2.51162528222646e-15!GO:0006119;oxidative phosphorylation;3.27285076906166e-15!GO:0005740;mitochondrial envelope;4.94459193293123e-15!GO:0005789;endoplasmic reticulum membrane;9.70509192283552e-15!GO:0016192;vesicle-mediated transport;1.33190003248619e-14!GO:0000278;mitotic cell cycle;1.38582638940865e-14!GO:0031966;mitochondrial membrane;2.01596145443797e-14!GO:0008134;transcription factor binding;2.1110840400607e-14!GO:0019866;organelle inner membrane;5.02576497414064e-14!GO:0043285;biopolymer catabolic process;6.8486453350136e-14!GO:0044445;cytosolic part;1.63667685123595e-13!GO:0005793;ER-Golgi intermediate compartment;1.92055834369028e-13!GO:0044265;cellular macromolecule catabolic process;4.11282992024443e-13!GO:0009057;macromolecule catabolic process;7.66731592419405e-13!GO:0005730;nucleolus;8.31413410906671e-13!GO:0016887;ATPase activity;8.65006615176982e-13!GO:0006605;protein targeting;1.07577639934539e-12!GO:0051082;unfolded protein binding;1.3655722993579e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.45681704269085e-12!GO:0006512;ubiquitin cycle;1.47311103254797e-12!GO:0005635;nuclear envelope;1.59011565360689e-12!GO:0030163;protein catabolic process;1.59799954907134e-12!GO:0006974;response to DNA damage stimulus;1.61314644329744e-12!GO:0031965;nuclear membrane;1.95345598633122e-12!GO:0042623;ATPase activity, coupled;1.96181706742107e-12!GO:0005743;mitochondrial inner membrane;2.12596003913735e-12!GO:0019941;modification-dependent protein catabolic process;2.97942145887067e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.97942145887067e-12!GO:0044257;cellular protein catabolic process;3.02081670754314e-12!GO:0006511;ubiquitin-dependent protein catabolic process;3.33330250392294e-12!GO:0000502;proteasome complex (sensu Eukaryota);3.54703217177373e-12!GO:0004386;helicase activity;4.9159212351562e-12!GO:0008135;translation factor activity, nucleic acid binding;5.57561856689285e-12!GO:0022618;protein-RNA complex assembly;9.62130388251761e-12!GO:0043412;biopolymer modification;1.40635546643358e-11!GO:0000087;M phase of mitotic cell cycle;1.55768226802987e-11!GO:0044455;mitochondrial membrane part;1.68904214219087e-11!GO:0007067;mitosis;2.04546397257826e-11!GO:0022403;cell cycle phase;2.30873033808296e-11!GO:0051276;chromosome organization and biogenesis;5.09641790528352e-11!GO:0015934;large ribosomal subunit;5.41506708690085e-11!GO:0044453;nuclear membrane part;5.57767378703389e-11!GO:0015935;small ribosomal subunit;7.41054601509182e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.55018931395593e-11!GO:0000375;RNA splicing, via transesterification reactions;8.55018931395593e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.55018931395593e-11!GO:0051186;cofactor metabolic process;9.01070889740902e-11!GO:0016604;nuclear body;1.28590243364518e-10!GO:0031980;mitochondrial lumen;1.41608564095977e-10!GO:0005759;mitochondrial matrix;1.41608564095977e-10!GO:0005694;chromosome;1.46726804465217e-10!GO:0008026;ATP-dependent helicase activity;2.57245112848627e-10!GO:0005788;endoplasmic reticulum lumen;2.57547344059835e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.59406740595092e-10!GO:0006464;protein modification process;3.03435936064176e-10!GO:0044248;cellular catabolic process;3.29880703917907e-10!GO:0005746;mitochondrial respiratory chain;3.37408745030202e-10!GO:0006281;DNA repair;3.69201952956079e-10!GO:0015630;microtubule cytoskeleton;3.84195483779032e-10!GO:0051301;cell division;4.86042992813435e-10!GO:0006913;nucleocytoplasmic transport;5.4219041399731e-10!GO:0003712;transcription cofactor activity;6.15666311071581e-10!GO:0044431;Golgi apparatus part;8.89641671403463e-10!GO:0051169;nuclear transport;1.01361129937399e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.23624978645207e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.23624978645207e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.23624978645207e-09!GO:0006461;protein complex assembly;1.71795977968616e-09!GO:0016607;nuclear speck;1.71795977968616e-09!GO:0003743;translation initiation factor activity;1.72752206221072e-09!GO:0043038;amino acid activation;2.07620180663349e-09!GO:0006418;tRNA aminoacylation for protein translation;2.07620180663349e-09!GO:0043039;tRNA aminoacylation;2.07620180663349e-09!GO:0000279;M phase;2.16496792757479e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.27459719882119e-09!GO:0009719;response to endogenous stimulus;3.08330044847079e-09!GO:0050136;NADH dehydrogenase (quinone) activity;3.31395489797252e-09!GO:0003954;NADH dehydrogenase activity;3.31395489797252e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.31395489797252e-09!GO:0048523;negative regulation of cellular process;3.76798194657284e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;4.21316556348692e-09!GO:0008565;protein transporter activity;4.29947563404527e-09!GO:0006399;tRNA metabolic process;4.67060296453487e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.66851497053081e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.05978618088063e-08!GO:0006323;DNA packaging;1.18158285681956e-08!GO:0044427;chromosomal part;1.2202707884482e-08!GO:0006732;coenzyme metabolic process;1.37234879481273e-08!GO:0000074;regulation of progression through cell cycle;1.79741638839775e-08!GO:0051726;regulation of cell cycle;1.80074491542251e-08!GO:0005643;nuclear pore;2.63939961631406e-08!GO:0050794;regulation of cellular process;2.99948181262133e-08!GO:0043687;post-translational protein modification;3.69487380491307e-08!GO:0009259;ribonucleotide metabolic process;3.93368040245427e-08!GO:0006260;DNA replication;3.97422470854878e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.29536217014868e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.51420801187816e-08!GO:0030964;NADH dehydrogenase complex (quinone);6.80120842558321e-08!GO:0045271;respiratory chain complex I;6.80120842558321e-08!GO:0005747;mitochondrial respiratory chain complex I;6.80120842558321e-08!GO:0019787;small conjugating protein ligase activity;7.09823062248871e-08!GO:0042775;organelle ATP synthesis coupled electron transport;7.16998987629374e-08!GO:0042773;ATP synthesis coupled electron transport;7.16998987629374e-08!GO:0000139;Golgi membrane;7.51861686488599e-08!GO:0042254;ribosome biogenesis and assembly;1.02013796219165e-07!GO:0008639;small protein conjugating enzyme activity;1.1260119516206e-07!GO:0048519;negative regulation of biological process;1.19804995311978e-07!GO:0006403;RNA localization;1.20956891406613e-07!GO:0004842;ubiquitin-protein ligase activity;1.36952156828077e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.39486580028444e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.46326180233356e-07!GO:0005768;endosome;1.49162852686088e-07!GO:0009150;purine ribonucleotide metabolic process;1.49162852686088e-07!GO:0050657;nucleic acid transport;1.49323923725432e-07!GO:0051236;establishment of RNA localization;1.49323923725432e-07!GO:0050658;RNA transport;1.49323923725432e-07!GO:0030120;vesicle coat;1.58916905484062e-07!GO:0030662;coated vesicle membrane;1.58916905484062e-07!GO:0016787;hydrolase activity;1.5990673801988e-07!GO:0006163;purine nucleotide metabolic process;1.69626961107529e-07!GO:0005773;vacuole;1.86338421411833e-07!GO:0048475;coated membrane;1.88163080829376e-07!GO:0030117;membrane coat;1.88163080829376e-07!GO:0006446;regulation of translational initiation;1.98797028067324e-07!GO:0007010;cytoskeleton organization and biogenesis;2.54317671996552e-07!GO:0006413;translational initiation;2.56730726659715e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.72385723793385e-07!GO:0012501;programmed cell death;3.39643324532987e-07!GO:0009260;ribonucleotide biosynthetic process;3.51929341219809e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.60127920619063e-07!GO:0006366;transcription from RNA polymerase II promoter;4.83456071396929e-07!GO:0046930;pore complex;5.02368109061052e-07!GO:0009055;electron carrier activity;5.0324661906096e-07!GO:0006164;purine nucleotide biosynthetic process;5.46194573275787e-07!GO:0006915;apoptosis;5.65175949621323e-07!GO:0016568;chromatin modification;6.50476351896463e-07!GO:0017038;protein import;7.08402255563277e-07!GO:0009060;aerobic respiration;7.11254566246652e-07!GO:0015986;ATP synthesis coupled proton transport;8.55766255137687e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.55766255137687e-07!GO:0008219;cell death;8.89320874692502e-07!GO:0016265;death;8.89320874692502e-07!GO:0009199;ribonucleoside triphosphate metabolic process;9.02190626927636e-07!GO:0016881;acid-amino acid ligase activity;9.20873672201279e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.06397059895703e-06!GO:0009056;catabolic process;1.15573124377258e-06!GO:0009141;nucleoside triphosphate metabolic process;1.25443808930861e-06!GO:0065002;intracellular protein transport across a membrane;1.57442899272738e-06!GO:0000323;lytic vacuole;1.57442899272738e-06!GO:0005764;lysosome;1.57442899272738e-06!GO:0043566;structure-specific DNA binding;1.63790299275702e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.66287901402355e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.66287901402355e-06!GO:0045333;cellular respiration;1.70127966277026e-06!GO:0031988;membrane-bound vesicle;1.75764265768742e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.03510192238328e-06!GO:0046034;ATP metabolic process;2.07356200438251e-06!GO:0003724;RNA helicase activity;2.08404198395974e-06!GO:0031324;negative regulation of cellular metabolic process;2.09138157594892e-06!GO:0016564;transcription repressor activity;2.56544962325567e-06!GO:0006099;tricarboxylic acid cycle;2.64321161116552e-06!GO:0046356;acetyl-CoA catabolic process;2.64321161116552e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.87114753996172e-06!GO:0008654;phospholipid biosynthetic process;2.92083446530022e-06!GO:0051028;mRNA transport;3.23880743698133e-06!GO:0051187;cofactor catabolic process;3.84067595436758e-06!GO:0005761;mitochondrial ribosome;3.92784160779054e-06!GO:0000313;organellar ribosome;3.92784160779054e-06!GO:0005819;spindle;3.92784160779054e-06!GO:0009109;coenzyme catabolic process;4.20365714020294e-06!GO:0005798;Golgi-associated vesicle;4.51700975023562e-06!GO:0005667;transcription factor complex;4.60203057153717e-06!GO:0005813;centrosome;4.9246383199715e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.00473416613111e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.00473416613111e-06!GO:0019829;cation-transporting ATPase activity;5.20230008630403e-06!GO:0003714;transcription corepressor activity;5.35511720423957e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.45444751249699e-06!GO:0003697;single-stranded DNA binding;6.08380500968033e-06!GO:0005815;microtubule organizing center;6.48331160203121e-06!GO:0006084;acetyl-CoA metabolic process;7.12859825550337e-06!GO:0051789;response to protein stimulus;7.32392653681246e-06!GO:0006986;response to unfolded protein;7.32392653681246e-06!GO:0006606;protein import into nucleus;8.09792846182577e-06!GO:0065004;protein-DNA complex assembly;8.56987296494788e-06!GO:0051170;nuclear import;8.75270060585312e-06!GO:0009892;negative regulation of metabolic process;8.77704612316592e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.21149812488462e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.21149812488462e-06!GO:0006754;ATP biosynthetic process;1.00848055839134e-05!GO:0006753;nucleoside phosphate metabolic process;1.00848055839134e-05!GO:0050789;regulation of biological process;1.01767428468101e-05!GO:0006333;chromatin assembly or disassembly;1.07009597763556e-05!GO:0044440;endosomal part;1.1581279958819e-05!GO:0010008;endosome membrane;1.1581279958819e-05!GO:0031982;vesicle;1.2963503161702e-05!GO:0051246;regulation of protein metabolic process;1.43755191803708e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.50828434308403e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.50975843597409e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.50975843597409e-05!GO:0031410;cytoplasmic vesicle;1.5850814304724e-05!GO:0008361;regulation of cell size;1.58707357246664e-05!GO:0003924;GTPase activity;1.63260278093911e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.69173073792349e-05!GO:0030029;actin filament-based process;1.69173073792349e-05!GO:0016049;cell growth;1.74935180635229e-05!GO:0030133;transport vesicle;1.84821803600274e-05!GO:0016740;transferase activity;1.97717552282441e-05!GO:0009117;nucleotide metabolic process;2.00315212648522e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.05761020218836e-05!GO:0043623;cellular protein complex assembly;2.27095997363553e-05!GO:0006613;cotranslational protein targeting to membrane;2.33058173076336e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.42913726134189e-05!GO:0031252;leading edge;2.9677756431098e-05!GO:0008092;cytoskeletal protein binding;3.04601439677868e-05!GO:0051188;cofactor biosynthetic process;3.54398145703999e-05!GO:0030867;rough endoplasmic reticulum membrane;3.64344892903524e-05!GO:0000785;chromatin;3.82291216833239e-05!GO:0045786;negative regulation of progression through cell cycle;3.93938865302469e-05!GO:0007051;spindle organization and biogenesis;4.08425731499604e-05!GO:0005770;late endosome;4.57084787910764e-05!GO:0005874;microtubule;4.78818618592111e-05!GO:0016363;nuclear matrix;4.82614016075678e-05!GO:0019899;enzyme binding;5.15744389547961e-05!GO:0000151;ubiquitin ligase complex;5.65255203890135e-05!GO:0006752;group transfer coenzyme metabolic process;5.9370412466201e-05!GO:0005905;coated pit;7.38027205480845e-05!GO:0006793;phosphorus metabolic process;7.69858925587677e-05!GO:0006796;phosphate metabolic process;7.69858925587677e-05!GO:0006916;anti-apoptosis;8.11463839028418e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.26967708207919e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.52462443682887e-05!GO:0032446;protein modification by small protein conjugation;8.59909689278111e-05!GO:0019222;regulation of metabolic process;8.76607193927338e-05!GO:0016481;negative regulation of transcription;9.24078916355511e-05!GO:0016310;phosphorylation;9.40208851960817e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.73849308749388e-05!GO:0000245;spliceosome assembly;9.77701764880868e-05!GO:0045259;proton-transporting ATP synthase complex;0.000103851270402417!GO:0030532;small nuclear ribonucleoprotein complex;0.000107613031471637!GO:0043069;negative regulation of programmed cell death;0.000107758005491317!GO:0016563;transcription activator activity;0.000127825246129962!GO:0005769;early endosome;0.000134213022474048!GO:0016567;protein ubiquitination;0.000145693940631919!GO:0043067;regulation of programmed cell death;0.000145693940631919!GO:0044262;cellular carbohydrate metabolic process;0.000146439502609391!GO:0042981;regulation of apoptosis;0.000158113747156279!GO:0004576;oligosaccharyl transferase activity;0.000162702228437395!GO:0016853;isomerase activity;0.000164682939237645!GO:0006364;rRNA processing;0.000169050570885714!GO:0016859;cis-trans isomerase activity;0.000170818718601039!GO:0008186;RNA-dependent ATPase activity;0.000183851527493415!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000189426629082101!GO:0003713;transcription coactivator activity;0.00019326530951866!GO:0043066;negative regulation of apoptosis;0.000204435180509505!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000215874232091141!GO:0008250;oligosaccharyl transferase complex;0.000235528337625773!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000260707360465933!GO:0005839;proteasome core complex (sensu Eukaryota);0.000264681746872732!GO:0016072;rRNA metabolic process;0.000287783622921584!GO:0016491;oxidoreductase activity;0.000295363555283476!GO:0001558;regulation of cell growth;0.000312200882434908!GO:0015980;energy derivation by oxidation of organic compounds;0.000330533708972474!GO:0046489;phosphoinositide biosynthetic process;0.000340419140383057!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000347479881953776!GO:0005791;rough endoplasmic reticulum;0.000357551619068345!GO:0030663;COPI coated vesicle membrane;0.000360410209799939!GO:0030126;COPI vesicle coat;0.000360410209799939!GO:0046474;glycerophospholipid biosynthetic process;0.000368081091685415!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000381664827019529!GO:0051329;interphase of mitotic cell cycle;0.00039052990448402!GO:0009108;coenzyme biosynthetic process;0.000402397695705149!GO:0006891;intra-Golgi vesicle-mediated transport;0.000420480649375294!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000459786413977909!GO:0003690;double-stranded DNA binding;0.000460453370347335!GO:0030134;ER to Golgi transport vesicle;0.000485422420160377!GO:0051325;interphase;0.000497073754146484!GO:0051427;hormone receptor binding;0.000538173581432682!GO:0004004;ATP-dependent RNA helicase activity;0.000557591376521317!GO:0003729;mRNA binding;0.000673579973753708!GO:0006612;protein targeting to membrane;0.000688252407772699!GO:0045454;cell redox homeostasis;0.000709450296984513!GO:0051168;nuclear export;0.000711182800884318!GO:0005048;signal sequence binding;0.000730356889745306!GO:0018196;peptidyl-asparagine modification;0.000730356889745306!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000730356889745306!GO:0019843;rRNA binding;0.000783547860668148!GO:0004298;threonine endopeptidase activity;0.000818121564362101!GO:0006334;nucleosome assembly;0.000859237361399229!GO:0031968;organelle outer membrane;0.000942065332364956!GO:0044420;extracellular matrix part;0.000991472714426342!GO:0031497;chromatin assembly;0.000992700770841885!GO:0035257;nuclear hormone receptor binding;0.00100036243241842!GO:0031124;mRNA 3'-end processing;0.00112176491369306!GO:0006261;DNA-dependent DNA replication;0.00112176491369306!GO:0005885;Arp2/3 protein complex;0.00112176491369306!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00117220964789658!GO:0007243;protein kinase cascade;0.00119498101134506!GO:0046467;membrane lipid biosynthetic process;0.00120417319077662!GO:0019867;outer membrane;0.00121171278184546!GO:0048471;perinuclear region of cytoplasm;0.00121739712269634!GO:0030127;COPII vesicle coat;0.00122210689132631!GO:0012507;ER to Golgi transport vesicle membrane;0.00122210689132631!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00122744197031896!GO:0015399;primary active transmembrane transporter activity;0.00122744197031896!GO:0030137;COPI-coated vesicle;0.00123470413035461!GO:0043021;ribonucleoprotein binding;0.0012518574952726!GO:0043284;biopolymer biosynthetic process;0.00126126201098379!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00134599389789254!GO:0000075;cell cycle checkpoint;0.00138160695484146!GO:0000059;protein import into nucleus, docking;0.00142317357692394!GO:0065007;biological regulation;0.00154030437400531!GO:0006414;translational elongation;0.00160777421257581!GO:0007052;mitotic spindle organization and biogenesis;0.00173163014122425!GO:0008094;DNA-dependent ATPase activity;0.00173752757051548!GO:0000775;chromosome, pericentric region;0.00175178848848705!GO:0051920;peroxiredoxin activity;0.00193550020981112!GO:0016197;endosome transport;0.00222696087027514!GO:0003682;chromatin binding;0.00222696087027514!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00234765959056396!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00234765959056396!GO:0051252;regulation of RNA metabolic process;0.00245751484692652!GO:0030176;integral to endoplasmic reticulum membrane;0.00260020583298488!GO:0006310;DNA recombination;0.00266639923048292!GO:0003678;DNA helicase activity;0.00270580268834484!GO:0048522;positive regulation of cellular process;0.00295070599947927!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.003127126853008!GO:0007040;lysosome organization and biogenesis;0.00321895205555065!GO:0000776;kinetochore;0.00328776925534425!GO:0003684;damaged DNA binding;0.00341566887314827!GO:0008022;protein C-terminus binding;0.00344142552228466!GO:0006302;double-strand break repair;0.00345285068459615!GO:0004177;aminopeptidase activity;0.00345285068459615!GO:0006402;mRNA catabolic process;0.00353923723319343!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00367970537855029!GO:0005525;GTP binding;0.00373930074636824!GO:0008047;enzyme activator activity;0.00374775390763685!GO:0007050;cell cycle arrest;0.00387534630196794!GO:0030658;transport vesicle membrane;0.00406946511661364!GO:0007033;vacuole organization and biogenesis;0.00415279890220703!GO:0006650;glycerophospholipid metabolic process;0.00416468463585391!GO:0009165;nucleotide biosynthetic process;0.00432418341216572!GO:0008610;lipid biosynthetic process;0.00436166571789547!GO:0019798;procollagen-proline dioxygenase activity;0.00459031199263506!GO:0016779;nucleotidyltransferase activity;0.00464226549819628!GO:0031123;RNA 3'-end processing;0.00490925876790554!GO:0015631;tubulin binding;0.00491243375330853!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00491243375330853!GO:0006505;GPI anchor metabolic process;0.00508847799288194!GO:0030521;androgen receptor signaling pathway;0.00513377564687859!GO:0006506;GPI anchor biosynthetic process;0.00518208117708856!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0052179157058111!GO:0005581;collagen;0.00524109137837135!GO:0004674;protein serine/threonine kinase activity;0.00548757282787889!GO:0045045;secretory pathway;0.00549360825007271!GO:0006091;generation of precursor metabolites and energy;0.00570009233283715!GO:0030118;clathrin coat;0.00571244341943197!GO:0065009;regulation of a molecular function;0.00573137073042502!GO:0043492;ATPase activity, coupled to movement of substances;0.0057844668652614!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00604341186341654!GO:0031543;peptidyl-proline dioxygenase activity;0.0061442317403585!GO:0005741;mitochondrial outer membrane;0.00623771942481975!GO:0031323;regulation of cellular metabolic process;0.00625762753321534!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00641127254408593!GO:0005856;cytoskeleton;0.00642315191680085!GO:0048500;signal recognition particle;0.00656573262592217!GO:0006509;membrane protein ectodomain proteolysis;0.00683088744318349!GO:0033619;membrane protein proteolysis;0.00683088744318349!GO:0003779;actin binding;0.00683945737454233!GO:0008484;sulfuric ester hydrolase activity;0.00687935001503655!GO:0017166;vinculin binding;0.00692701902455689!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00708953188938435!GO:0007093;mitotic cell cycle checkpoint;0.00714041731800854!GO:0003756;protein disulfide isomerase activity;0.00804332269691528!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00804332269691528!GO:0006892;post-Golgi vesicle-mediated transport;0.00839229242433953!GO:0051052;regulation of DNA metabolic process;0.00853788629994835!GO:0030384;phosphoinositide metabolic process;0.00856810178082303!GO:0031418;L-ascorbic acid binding;0.00861321444417001!GO:0000922;spindle pole;0.00877286257537845!GO:0008154;actin polymerization and/or depolymerization;0.00892056118139557!GO:0007005;mitochondrion organization and biogenesis;0.00898792666904083!GO:0006497;protein amino acid lipidation;0.00930890156102934!GO:0001527;microfibril;0.00938191434945207!GO:0001726;ruffle;0.00943602758908552!GO:0030132;clathrin coat of coated pit;0.00943602758908552!GO:0003711;transcription elongation regulator activity;0.00957694577013976!GO:0031901;early endosome membrane;0.00965848596097894!GO:0006378;mRNA polyadenylation;0.00971040330500269!GO:0005637;nuclear inner membrane;0.0100177275552696!GO:0032561;guanyl ribonucleotide binding;0.0103093554493036!GO:0019001;guanyl nucleotide binding;0.0103093554493036!GO:0007160;cell-matrix adhesion;0.0103734667338316!GO:0006289;nucleotide-excision repair;0.0107601783126422!GO:0051128;regulation of cellular component organization and biogenesis;0.0109554747070998!GO:0030660;Golgi-associated vesicle membrane;0.0109706268219693!GO:0007017;microtubule-based process;0.0112723268056729!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0115039992374955!GO:0033043;regulation of organelle organization and biogenesis;0.0115039992374955!GO:0040008;regulation of growth;0.0115051088644982!GO:0003923;GPI-anchor transamidase activity;0.0115480266293091!GO:0016255;attachment of GPI anchor to protein;0.0115480266293091!GO:0042765;GPI-anchor transamidase complex;0.0115480266293091!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0116594749639672!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0116594749639672!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0116594749639672!GO:0016281;eukaryotic translation initiation factor 4F complex;0.011860002006299!GO:0005657;replication fork;0.0129265189513287!GO:0031589;cell-substrate adhesion;0.0129265189513287!GO:0035258;steroid hormone receptor binding;0.0129884220040736!GO:0000082;G1/S transition of mitotic cell cycle;0.0133223679429803!GO:0008139;nuclear localization sequence binding;0.013356161681818!GO:0003746;translation elongation factor activity;0.0133789884482674!GO:0005938;cell cortex;0.013588150189194!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0135981886883904!GO:0045892;negative regulation of transcription, DNA-dependent;0.0138385440905086!GO:0032200;telomere organization and biogenesis;0.0138714390510305!GO:0000723;telomere maintenance;0.0138714390510305!GO:0005762;mitochondrial large ribosomal subunit;0.0139103479910174!GO:0000315;organellar large ribosomal subunit;0.0139103479910174!GO:0005869;dynactin complex;0.0139103479910174!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0139168007546903!GO:0045047;protein targeting to ER;0.0139168007546903!GO:0016126;sterol biosynthetic process;0.0140067238697727!GO:0005591;collagen type VIII;0.0143858287277843!GO:0005598;short-chain collagen;0.0143858287277843!GO:0030027;lamellipodium;0.0143858287277843!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0144676130757567!GO:0007041;lysosomal transport;0.0145772427861029!GO:0031072;heat shock protein binding;0.0146069125367336!GO:0016044;membrane organization and biogenesis;0.0149301734307893!GO:0042802;identical protein binding;0.0149879439512011!GO:0005862;muscle thin filament tropomyosin;0.0150089526496965!GO:0007034;vacuolar transport;0.0156570089085583!GO:0030032;lamellipodium biogenesis;0.0159985023766804!GO:0051539;4 iron, 4 sulfur cluster binding;0.0162537843676279!GO:0006897;endocytosis;0.0165176552004591!GO:0010324;membrane invagination;0.0165176552004591!GO:0005583;fibrillar collagen;0.0165894190550445!GO:0006984;ER-nuclear signaling pathway;0.0171336504037198!GO:0005876;spindle microtubule;0.0173807867403676!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0175980161482213!GO:0046519;sphingoid metabolic process;0.0178149100028417!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0179122406079331!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0179122406079331!GO:0031625;ubiquitin protein ligase binding;0.0179468042110517!GO:0030518;steroid hormone receptor signaling pathway;0.0181492156943785!GO:0005774;vacuolar membrane;0.018466996666296!GO:0001666;response to hypoxia;0.0187394231874504!GO:0000049;tRNA binding;0.0189122809623347!GO:0006383;transcription from RNA polymerase III promoter;0.0191022135457404!GO:0006350;transcription;0.0191888551206889!GO:0051271;negative regulation of cell motility;0.0195537274143442!GO:0006352;transcription initiation;0.0195925310925163!GO:0031529;ruffle organization and biogenesis;0.0196933672202851!GO:0043488;regulation of mRNA stability;0.020020338248627!GO:0043487;regulation of RNA stability;0.020020338248627!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0200348842876341!GO:0045893;positive regulation of transcription, DNA-dependent;0.0201161361436477!GO:0048487;beta-tubulin binding;0.0204236548587209!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0204687442480858!GO:0004003;ATP-dependent DNA helicase activity;0.0205569874769737!GO:0005832;chaperonin-containing T-complex;0.0205933198866742!GO:0006607;NLS-bearing substrate import into nucleus;0.0207729002323722!GO:0006643;membrane lipid metabolic process;0.0208857804044568!GO:0000781;chromosome, telomeric region;0.0219753484754622!GO:0050662;coenzyme binding;0.0219753484754622!GO:0007030;Golgi organization and biogenesis;0.0219753484754622!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0221797927738812!GO:0008312;7S RNA binding;0.0223955263808625!GO:0000118;histone deacetylase complex;0.0231123851286857!GO:0042158;lipoprotein biosynthetic process;0.0237977005317936!GO:0045792;negative regulation of cell size;0.0239387660219675!GO:0050681;androgen receptor binding;0.0241687179617361!GO:0007088;regulation of mitosis;0.0243018968765205!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0248360647101883!GO:0006401;RNA catabolic process;0.0248983545343356!GO:0000339;RNA cap binding;0.0250624671002596!GO:0031902;late endosome membrane;0.0251761197908751!GO:0030308;negative regulation of cell growth;0.0254184058358604!GO:0006672;ceramide metabolic process;0.0254184058358604!GO:0033559;unsaturated fatty acid metabolic process;0.0255186540889981!GO:0006636;unsaturated fatty acid biosynthetic process;0.0255186540889981!GO:0051287;NAD binding;0.0256130913064381!GO:0009967;positive regulation of signal transduction;0.0260717099249043!GO:0006405;RNA export from nucleus;0.0262141957608747!GO:0004527;exonuclease activity;0.0267626647220194!GO:0022408;negative regulation of cell-cell adhesion;0.0268298057758644!GO:0000030;mannosyltransferase activity;0.0268552068397623!GO:0045941;positive regulation of transcription;0.0269892934858049!GO:0030149;sphingolipid catabolic process;0.0272600895097228!GO:0030041;actin filament polymerization;0.0276050284885118!GO:0005684;U2-dependent spliceosome;0.0280944733739644!GO:0019752;carboxylic acid metabolic process;0.0284364678549794!GO:0006818;hydrogen transport;0.028676787644364!GO:0044452;nucleolar part;0.0289023011465725!GO:0005875;microtubule associated complex;0.0293193480558109!GO:0006007;glucose catabolic process;0.0293193480558109!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0293193480558109!GO:0000910;cytokinesis;0.0293863391153182!GO:0015992;proton transport;0.0294461106085569!GO:0006354;RNA elongation;0.0304547317503973!GO:0046483;heterocycle metabolic process;0.0305324875570076!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0306994945020407!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0306994945020407!GO:0006376;mRNA splice site selection;0.0308653674667777!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0308653674667777!GO:0005975;carbohydrate metabolic process;0.0309225173529313!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0313577020641075!GO:0050790;regulation of catalytic activity;0.0315601845657318!GO:0001952;regulation of cell-matrix adhesion;0.0316461087595532!GO:0004563;beta-N-acetylhexosaminidase activity;0.0326226293358868!GO:0016584;nucleosome positioning;0.0326226293358868!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0326226293358868!GO:0008033;tRNA processing;0.0329685748224729!GO:0006082;organic acid metabolic process;0.0332241199118224!GO:0022890;inorganic cation transmembrane transporter activity;0.0335877981935464!GO:0005595;collagen type XII;0.0337909430248329!GO:0032940;secretion by cell;0.0337980807515193!GO:0000209;protein polyubiquitination;0.0337980807515193!GO:0007059;chromosome segregation;0.0337980807515193!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0340296087138131!GO:0043022;ribosome binding;0.0340808833249925!GO:0005096;GTPase activator activity;0.0343774738151261!GO:0048468;cell development;0.0346277543154511!GO:0016251;general RNA polymerase II transcription factor activity;0.0349222614724336!GO:0005784;translocon complex;0.0351465505749884!GO:0035035;histone acetyltransferase binding;0.0365699184397074!GO:0016408;C-acyltransferase activity;0.0365699184397074!GO:0006595;polyamine metabolic process;0.0366938695455213!GO:0030119;AP-type membrane coat adaptor complex;0.0387089154575145!GO:0008180;signalosome;0.0387104374574483!GO:0032508;DNA duplex unwinding;0.0387824089201936!GO:0032392;DNA geometric change;0.0387824089201936!GO:0044437;vacuolar part;0.0388716128968292!GO:0032535;regulation of cellular component size;0.0403448598111937!GO:0031301;integral to organelle membrane;0.0404118133400098!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0404118133400098!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0404118133400098!GO:0030833;regulation of actin filament polymerization;0.0413813863835347!GO:0006740;NADPH regeneration;0.042456544986189!GO:0006098;pentose-phosphate shunt;0.042456544986189!GO:0016579;protein deubiquitination;0.04276648264591!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0441847327084376!GO:0040013;negative regulation of locomotion;0.0448279713659329!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0448279713659329!GO:0030659;cytoplasmic vesicle membrane;0.045083964459228!GO:0043631;RNA polyadenylation;0.0452900221561855!GO:0006379;mRNA cleavage;0.0453591095872903!GO:0051348;negative regulation of transferase activity;0.0454548746759411!GO:0045639;positive regulation of myeloid cell differentiation;0.0456356005157247!GO:0006338;chromatin remodeling;0.0456356005157247!GO:0006644;phospholipid metabolic process;0.0457353369495334!GO:0031461;cullin-RING ubiquitin ligase complex;0.0459636565730621!GO:0030131;clathrin adaptor complex;0.0467148324363981!GO:0009225;nucleotide-sugar metabolic process;0.0467784806322095!GO:0033673;negative regulation of kinase activity;0.047973631235417!GO:0006469;negative regulation of protein kinase activity;0.047973631235417!GO:0016301;kinase activity;0.0497902249465538 | |||
|sample_id=14305 | |sample_id=14305 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=ALX4:2.20465791481;XBP1:2.19048019873;NKX3-1:2.19031216361;HIF1A:2.04231703583;EN1,2:1.92218390016;HOX{A5,B5}:1.84206932302;HBP1_HMGB_SSRP1_UBTF:1.6789065526;MYBL2:1.66785586818;KLF4:1.61903298806;SRF:1.61104714829;HSF1,2:1.60837138589;FOXL1:1.57370600676;TEAD1:1.56012979006;UFEwm:1.55419287142;TAL1_TCF{3,4,12}:1.52589102221;NR3C1:1.52323897571;PRDM1:1.49881895694;NFE2L1:1.48341945053;GZF1:1.48034519451;ZNF384:1.46689196964;MAFB:1.40532369485;MZF1:1.40092234166;RXR{A,B,G}:1.37171652651;ESR1:1.34231411762;RXRA_VDR{dimer}:1.32393684966;HMX1:1.31886258015;GFI1B:1.28068745809;GATA4:1.26470681663;NKX3-2:1.24647168892;GCM1,2:1.23898788398;SOX17:1.23281553799;TP53:1.19839400872;ZNF238:1.17953699265;EBF1:1.16919818741;EVI1:1.14904720538;GTF2A1,2:1.14269721358;AHR_ARNT_ARNT2:1.13828642967;EP300:1.13798445766;GFI1:1.08698180559;MTE{core}:1.06700192237;MAZ:1.05855417033;TEF:1.04463709251;HMGA1,2:1.02291492571;ATF6:1.00134898377;GTF2I:0.942301373131;ZIC1..3:0.913501039265;TOPORS:0.899579364986;NANOG{mouse}:0.893728431587;ZBTB6:0.855330691056;RFX1:0.854556110446;SMAD1..7,9:0.814347699416;TFAP2{A,C}:0.776309851601;BPTF:0.745544464999;TLX1..3_NFIC{dimer}:0.741398186883;TFAP4:0.739032176264;TFDP1:0.691273810633;SPZ1:0.65904248053;FOXD3:0.611822961573;NKX2-2,8:0.592161708188;NFATC1..3:0.575384587717;ARID5B:0.555013510991;FOXN1:0.532356673984;TFCP2:0.522136675028;TBX4,5:0.500919196829;NFE2L2:0.480089866394;HOX{A4,D4}:0.471354446638;GLI1..3:0.44607305637;AIRE:0.44422619497;BACH2:0.43885432151;PPARG:0.433414790218;MYB:0.424711615934;HLF:0.407367398473;MEF2{A,B,C,D}:0.373275930571;CREB1:0.353130565608;POU5F1:0.34742360415;IKZF1:0.328878286647;MED-1{core}:0.320167170539;HOXA9_MEIS1:0.299369072765;NFE2:0.281967556225;SOX2:0.28066713344;PATZ1:0.277526185669;NKX2-1,4:0.275935754983;PAX8:0.260806781303;CDC5L:0.236892442943;XCPE1{core}:0.233244434568;NRF1:0.225348174601;RREB1:0.213598800695;FOS_FOS{B,L1}_JUN{B,D}:0.209581999777;POU3F1..4:0.198805641769;PAX3,7:0.16408433639;ELK1,4_GABP{A,B1}:0.16356125594;E2F1..5:0.158022839553;MYFfamily:0.138339703084;LHX3,4:0.134494483447;PDX1:0.133163612187;PAX5:0.129451268152;PAX2:0.126317380533;FOX{D1,D2}:0.102880811732;TBP:0.0874868628475;ATF4:0.0766211022376;TLX2:0.0721319707126;ATF5_CREB3:0.0669060380484;HES1:0.0589890917196;NFIX:0.0505029822702;TFAP2B:0.0397508279629;ZNF143:0.029702249351;CRX:0.0278792388116;LEF1_TCF7_TCF7L1,2:0.0183710701378;RUNX1..3:0.017318723986;STAT1,3:0.0134127730607;HIC1:0.00554410305103;NFY{A,B,C}:0.00498376349141;SP1:0.00412814029585;ZFP161:-0.003101379428;T:-0.00716093046263;FOSL2:-0.0146456124928;DMAP1_NCOR{1,2}_SMARC:-0.0344366221896;PRRX1,2:-0.0634743793;SOX5:-0.0889876991522;POU1F1:-0.104676472594;YY1:-0.112653441596;NHLH1,2:-0.115196015486;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.15421617413;DBP:-0.16827741709;JUN:-0.193010535776;ZBTB16:-0.200077814274;FOXA2:-0.208192908543;ZNF148:-0.214485371358;NR1H4:-0.22283064358;CEBPA,B_DDIT3:-0.226940319007;ELF1,2,4:-0.233987523172;HAND1,2:-0.242248812565;IRF1,2:-0.255927828217;FOX{I1,J2}:-0.25603686206;FOXP1:-0.258975669314;RFX2..5_RFXANK_RFXAP:-0.290515958911;STAT2,4,6:-0.318562532986;HNF1A:-0.337209091486;CUX2:-0.337954700092;EGR1..3:-0.3698622669;NKX2-3_NKX2-5:-0.421585043234;SPI1:-0.423580101539;PAX1,9:-0.426735398615;SPIB:-0.430115085008;ONECUT1,2:-0.44228056684;SREBF1,2:-0.454217737834;HNF4A_NR2F1,2:-0.466672952069;ZNF423:-0.47612053366;bHLH_family:-0.491613371379;ETS1,2:-0.493676314206;TGIF1:-0.498009370864;POU6F1:-0.506429148647;HOX{A6,A7,B6,B7}:-0.524101445898;NFKB1_REL_RELA:-0.58937356109;AR:-0.600322082452;PAX4:-0.618889171571;SOX{8,9,10}:-0.620820256779;PBX1:-0.646877792345;FOXP3:-0.673451626032;NR6A1:-0.690871725264;REST:-0.757476333984;ADNP_IRX_SIX_ZHX:-0.765543456407;ATF2:-0.773815606943;FOXO1,3,4:-0.783464499788;VSX1,2:-0.785186363105;IKZF2:-0.907422975706;NANOG:-0.925069811282;POU2F1..3:-0.946511066387;STAT5{A,B}:-0.958489477047;MTF1:-0.961091321651;RBPJ:-0.963365255294;OCT4_SOX2{dimer}:-1.00737037552;NKX6-1,2:-1.01465845574;ALX1:-1.02817387984;NFIL3:-1.02825142244;IRF7:-1.02872465173;SNAI1..3:-1.10961808388;PITX1..3:-1.1096937091;BREu{core}:-1.11788146157;CDX1,2,4:-1.14965879889;GATA6:-1.21281755528;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.21496788738;ZEB1:-1.26276915339;FOXM1:-1.30081479347;LMO2:-1.38484735233;MYOD1:-1.42474164951;NR5A1,2:-1.47203245644;RORA:-1.55382613981;PAX6:-1.58087559376;FOX{F1,F2,J1}:-1.7414480631;ESRRA:-1.77500998305;FOXQ1:-1.89568473862 | |top_motifs=ALX4:2.20465791481;XBP1:2.19048019873;NKX3-1:2.19031216361;HIF1A:2.04231703583;EN1,2:1.92218390016;HOX{A5,B5}:1.84206932302;HBP1_HMGB_SSRP1_UBTF:1.6789065526;MYBL2:1.66785586818;KLF4:1.61903298806;SRF:1.61104714829;HSF1,2:1.60837138589;FOXL1:1.57370600676;TEAD1:1.56012979006;UFEwm:1.55419287142;TAL1_TCF{3,4,12}:1.52589102221;NR3C1:1.52323897571;PRDM1:1.49881895694;NFE2L1:1.48341945053;GZF1:1.48034519451;ZNF384:1.46689196964;MAFB:1.40532369485;MZF1:1.40092234166;RXR{A,B,G}:1.37171652651;ESR1:1.34231411762;RXRA_VDR{dimer}:1.32393684966;HMX1:1.31886258015;GFI1B:1.28068745809;GATA4:1.26470681663;NKX3-2:1.24647168892;GCM1,2:1.23898788398;SOX17:1.23281553799;TP53:1.19839400872;ZNF238:1.17953699265;EBF1:1.16919818741;EVI1:1.14904720538;GTF2A1,2:1.14269721358;AHR_ARNT_ARNT2:1.13828642967;EP300:1.13798445766;GFI1:1.08698180559;MTE{core}:1.06700192237;MAZ:1.05855417033;TEF:1.04463709251;HMGA1,2:1.02291492571;ATF6:1.00134898377;GTF2I:0.942301373131;ZIC1..3:0.913501039265;TOPORS:0.899579364986;NANOG{mouse}:0.893728431587;ZBTB6:0.855330691056;RFX1:0.854556110446;SMAD1..7,9:0.814347699416;TFAP2{A,C}:0.776309851601;BPTF:0.745544464999;TLX1..3_NFIC{dimer}:0.741398186883;TFAP4:0.739032176264;TFDP1:0.691273810633;SPZ1:0.65904248053;FOXD3:0.611822961573;NKX2-2,8:0.592161708188;NFATC1..3:0.575384587717;ARID5B:0.555013510991;FOXN1:0.532356673984;TFCP2:0.522136675028;TBX4,5:0.500919196829;NFE2L2:0.480089866394;HOX{A4,D4}:0.471354446638;GLI1..3:0.44607305637;AIRE:0.44422619497;BACH2:0.43885432151;PPARG:0.433414790218;MYB:0.424711615934;HLF:0.407367398473;MEF2{A,B,C,D}:0.373275930571;CREB1:0.353130565608;POU5F1:0.34742360415;IKZF1:0.328878286647;MED-1{core}:0.320167170539;HOXA9_MEIS1:0.299369072765;NFE2:0.281967556225;SOX2:0.28066713344;PATZ1:0.277526185669;NKX2-1,4:0.275935754983;PAX8:0.260806781303;CDC5L:0.236892442943;XCPE1{core}:0.233244434568;NRF1:0.225348174601;RREB1:0.213598800695;FOS_FOS{B,L1}_JUN{B,D}:0.209581999777;POU3F1..4:0.198805641769;PAX3,7:0.16408433639;ELK1,4_GABP{A,B1}:0.16356125594;E2F1..5:0.158022839553;MYFfamily:0.138339703084;LHX3,4:0.134494483447;PDX1:0.133163612187;PAX5:0.129451268152;PAX2:0.126317380533;FOX{D1,D2}:0.102880811732;TBP:0.0874868628475;ATF4:0.0766211022376;TLX2:0.0721319707126;ATF5_CREB3:0.0669060380484;HES1:0.0589890917196;NFIX:0.0505029822702;TFAP2B:0.0397508279629;ZNF143:0.029702249351;CRX:0.0278792388116;LEF1_TCF7_TCF7L1,2:0.0183710701378;RUNX1..3:0.017318723986;STAT1,3:0.0134127730607;HIC1:0.00554410305103;NFY{A,B,C}:0.00498376349141;SP1:0.00412814029585;ZFP161:-0.003101379428;T:-0.00716093046263;FOSL2:-0.0146456124928;DMAP1_NCOR{1,2}_SMARC:-0.0344366221896;PRRX1,2:-0.0634743793;SOX5:-0.0889876991522;POU1F1:-0.104676472594;YY1:-0.112653441596;NHLH1,2:-0.115196015486;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.15421617413;DBP:-0.16827741709;JUN:-0.193010535776;ZBTB16:-0.200077814274;FOXA2:-0.208192908543;ZNF148:-0.214485371358;NR1H4:-0.22283064358;CEBPA,B_DDIT3:-0.226940319007;ELF1,2,4:-0.233987523172;HAND1,2:-0.242248812565;IRF1,2:-0.255927828217;FOX{I1,J2}:-0.25603686206;FOXP1:-0.258975669314;RFX2..5_RFXANK_RFXAP:-0.290515958911;STAT2,4,6:-0.318562532986;HNF1A:-0.337209091486;CUX2:-0.337954700092;EGR1..3:-0.3698622669;NKX2-3_NKX2-5:-0.421585043234;SPI1:-0.423580101539;PAX1,9:-0.426735398615;SPIB:-0.430115085008;ONECUT1,2:-0.44228056684;SREBF1,2:-0.454217737834;HNF4A_NR2F1,2:-0.466672952069;ZNF423:-0.47612053366;bHLH_family:-0.491613371379;ETS1,2:-0.493676314206;TGIF1:-0.498009370864;POU6F1:-0.506429148647;HOX{A6,A7,B6,B7}:-0.524101445898;NFKB1_REL_RELA:-0.58937356109;AR:-0.600322082452;PAX4:-0.618889171571;SOX{8,9,10}:-0.620820256779;PBX1:-0.646877792345;FOXP3:-0.673451626032;NR6A1:-0.690871725264;REST:-0.757476333984;ADNP_IRX_SIX_ZHX:-0.765543456407;ATF2:-0.773815606943;FOXO1,3,4:-0.783464499788;VSX1,2:-0.785186363105;IKZF2:-0.907422975706;NANOG:-0.925069811282;POU2F1..3:-0.946511066387;STAT5{A,B}:-0.958489477047;MTF1:-0.961091321651;RBPJ:-0.963365255294;OCT4_SOX2{dimer}:-1.00737037552;NKX6-1,2:-1.01465845574;ALX1:-1.02817387984;NFIL3:-1.02825142244;IRF7:-1.02872465173;SNAI1..3:-1.10961808388;PITX1..3:-1.1096937091;BREu{core}:-1.11788146157;CDX1,2,4:-1.14965879889;GATA6:-1.21281755528;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.21496788738;ZEB1:-1.26276915339;FOXM1:-1.30081479347;LMO2:-1.38484735233;MYOD1:-1.42474164951;NR5A1,2:-1.47203245644;RORA:-1.55382613981;PAX6:-1.58087559376;FOX{F1,F2,J1}:-1.7414480631;ESRRA:-1.77500998305;FOXQ1:-1.89568473862 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14305-155C3;search_select_hide=table117:FF:14305-155C3 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12398 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12398
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12398
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0768 |
| 10 | 10 | 0.376 |
| 100 | 100 | 0.486 |
| 101 | 101 | 0.309 |
| 102 | 102 | 0.0758 |
| 103 | 103 | 0.313 |
| 104 | 104 | 0.929 |
| 105 | 105 | 0.529 |
| 106 | 106 | 0.126 |
| 107 | 107 | 0.975 |
| 108 | 108 | 0.919 |
| 109 | 109 | 0.013 |
| 11 | 11 | 0.129 |
| 110 | 110 | 0.624 |
| 111 | 111 | 0.0703 |
| 112 | 112 | 0.602 |
| 113 | 113 | 0.0163 |
| 114 | 114 | 0.322 |
| 115 | 115 | 0.262 |
| 116 | 116 | 0.779 |
| 117 | 117 | 0.105 |
| 118 | 118 | 0.414 |
| 119 | 119 | 0.307 |
| 12 | 12 | 0.937 |
| 120 | 120 | 0.754 |
| 121 | 121 | 0.838 |
| 122 | 122 | 0.0595 |
| 123 | 123 | 0.00104 |
| 124 | 124 | 0.063 |
| 125 | 125 | 0.704 |
| 126 | 126 | 0.233 |
| 127 | 127 | 0.516 |
| 128 | 128 | 0.188 |
| 129 | 129 | 0.107 |
| 13 | 13 | 0.619 |
| 130 | 130 | 0.991 |
| 131 | 131 | 0.399 |
| 132 | 132 | 0.623 |
| 133 | 133 | 0.328 |
| 134 | 134 | 0.923 |
| 135 | 135 | 0.837 |
| 136 | 136 | 0.131 |
| 137 | 137 | 0.918 |
| 138 | 138 | 0.533 |
| 139 | 139 | 0.108 |
| 14 | 14 | 0.447 |
| 140 | 140 | 0.608 |
| 141 | 141 | 0.214 |
| 142 | 142 | 0.984 |
| 143 | 143 | 0.667 |
| 144 | 144 | 0.719 |
| 145 | 145 | 0.928 |
| 146 | 146 | 0.142 |
| 147 | 147 | 0.158 |
| 148 | 148 | 0.11 |
| 149 | 149 | 0.266 |
| 15 | 15 | 0.0534 |
| 150 | 150 | 0.608 |
| 151 | 151 | 0.131 |
| 152 | 152 | 0.479 |
| 153 | 153 | 0.648 |
| 154 | 154 | 0.482 |
| 155 | 155 | 0.0167 |
| 156 | 156 | 0.589 |
| 157 | 157 | 0.34 |
| 158 | 158 | 0.108 |
| 159 | 159 | 0.715 |
| 16 | 16 | 0.806 |
| 160 | 160 | 0.257 |
| 161 | 161 | 0.022 |
| 162 | 162 | 0.581 |
| 163 | 163 | 0.382 |
| 164 | 164 | 0.91 |
| 165 | 165 | 0.703 |
| 166 | 166 | 0.00483 |
| 167 | 167 | 0.314 |
| 168 | 168 | 0.991 |
| 169 | 169 | 0.853 |
| 17 | 17 | 0.719 |
| 18 | 18 | 0.759 |
| 19 | 19 | 0.257 |
| 2 | 2 | 0.897 |
| 20 | 20 | 0.418 |
| 21 | 21 | 0.502 |
| 22 | 22 | 0.825 |
| 23 | 23 | 0.801 |
| 24 | 24 | 0.37 |
| 25 | 25 | 0.126 |
| 26 | 26 | 0.896 |
| 27 | 27 | 0.488 |
| 28 | 28 | 0.688 |
| 29 | 29 | 0.958 |
| 3 | 3 | 0.445 |
| 30 | 30 | 0.569 |
| 31 | 31 | 0.667 |
| 32 | 32 | 8.05793e-7 |
| 33 | 33 | 0.215 |
| 34 | 34 | 0.611 |
| 35 | 35 | 0.515 |
| 36 | 36 | 0.0245 |
| 37 | 37 | 0.72 |
| 38 | 38 | 0.278 |
| 39 | 39 | 0.978 |
| 4 | 4 | 0.35 |
| 40 | 40 | 0.0466 |
| 41 | 41 | 0.78 |
| 42 | 42 | 0.286 |
| 43 | 43 | 0.451 |
| 44 | 44 | 0.373 |
| 45 | 45 | 0.492 |
| 46 | 46 | 0.499 |
| 47 | 47 | 0.128 |
| 48 | 48 | 0.332 |
| 49 | 49 | 0.0708 |
| 5 | 5 | 0.734 |
| 50 | 50 | 0.799 |
| 51 | 51 | 0.466 |
| 52 | 52 | 0.645 |
| 53 | 53 | 0.323 |
| 54 | 54 | 0.486 |
| 55 | 55 | 0.533 |
| 56 | 56 | 0.294 |
| 57 | 57 | 0.994 |
| 58 | 58 | 0.119 |
| 59 | 59 | 0.73 |
| 6 | 6 | 0.872 |
| 60 | 60 | 0.309 |
| 61 | 61 | 0.144 |
| 62 | 62 | 0.0841 |
| 63 | 63 | 0.565 |
| 64 | 64 | 0.207 |
| 65 | 65 | 0.473 |
| 66 | 66 | 0.43 |
| 67 | 67 | 0.813 |
| 68 | 68 | 0.866 |
| 69 | 69 | 0.676 |
| 7 | 7 | 0.0684 |
| 70 | 70 | 0.0748 |
| 71 | 71 | 0.804 |
| 72 | 72 | 0.271 |
| 73 | 73 | 0.448 |
| 74 | 74 | 0.323 |
| 75 | 75 | 0.0754 |
| 76 | 76 | 0.534 |
| 77 | 77 | 0.898 |
| 78 | 78 | 0.0126 |
| 79 | 79 | 0.149 |
| 8 | 8 | 0.181 |
| 80 | 80 | 0.551 |
| 81 | 81 | 0.38 |
| 82 | 82 | 0.725 |
| 83 | 83 | 0.0539 |
| 84 | 84 | 0.362 |
| 85 | 85 | 0.683 |
| 86 | 86 | 0.521 |
| 87 | 87 | 0.486 |
| 88 | 88 | 0.721 |
| 89 | 89 | 0.923 |
| 9 | 9 | 0.969 |
| 90 | 90 | 0.237 |
| 91 | 91 | 0.8 |
| 92 | 92 | 0.429 |
| 93 | 93 | 0.641 |
| 94 | 94 | 0.556 |
| 95 | 95 | 0.016 |
| 96 | 96 | 0.735 |
| 97 | 97 | 0.531 |
| 98 | 98 | 0.0486 |
| 99 | 99 | 0.521 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12398
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000670 human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
0000406 (nuclear fraction sample)
0000670 (human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
