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(Created page with "{{f5samples |id=FF:10210-103G3 |name=chicken embryo whole body, 01hr30min (HH1) |sample_id=10210 |rna_tube_id=103G3 |rna_box=103 |rna_position=G3 |sample_cell_lot=#1 |...")
 
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{{f5samples
{{f5samples
|id=FF:10210-103G3
|DRA_sample_Accession=chicken_CAGE@SAMD00053746
|name=chicken embryo whole body, 01hr30min (HH1)
|accession_numbers=chicken_CAGE;DRX057274;DRR063033;DRZ007528;DRZ007560
|sample_id=10210
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=103G3
|rna_box=103
|rna_position=G3
|sample_cell_lot=#1
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Chicken (Gallus gallus)
|sample_strain=
|sample_dev_stage=HH1
|sample_tissue=whole body
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=50.00000
|rna_concentration=
|sample_note=Roughly equivalent of mouse E5.5
|profile_hcage=CNhs12735,LSID960,,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000922,UBERON:0001062
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000032,FF:0000001,FF:0000242,FF:0000217,FF:0000004,FF:0000220
 
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 36:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|id=FF:10210-103G3
|is_a=EFO:0002091;;FF:0000004;;FF:0000220
|is_obsolete=
|library_id=CNhs12735
|name=chicken embryo whole body, 01hr30min (HH1)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12735,LSID960,release012,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=,,,
|rna_box=103
|rna_catalog_number=
|rna_concentration=0.36
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=G3
|rna_rin=
|rna_sample_type=
|rna_tube_id=103G3
|rna_weight_ug=50
|sample_age=
|sample_category=tissues
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=#1
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=
|sample_company=
|sample_description=
|sample_dev_stage=HH1
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=10210
|sample_note=Roughly equivalent of mouse E5.5
|sample_sex=
|sample_species=Gallus gallus
|sample_strain=
|sample_tissue=whole body
|top_motifs=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_chicken;search_select_hide=table111:FF:10210-103G3;search_select_hide=table117:FF:10210-103G3
}}
}}

Latest revision as of 09:37, 5 June 2020


Name:chicken embryo whole body, 01hr30min (HH1)
Species:Gallus gallus
Library ID:CNhs12735
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissuewhole body
dev stageHH1
sexNA
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
chicken_CAGE  SAMD00053746
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12735 chicken_CAGE DRX057274 DRR063033
Accession ID

Library idBAMCTSS
CNhs12735 DRZ007528 DRZ007560



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000032 (chicken sample)
0000001 (sample)
0000242 (chicken developmental series)
0000217 (chicken whole embryo)
0000004 (tissue sample)
0000220 (chicken embryo whole body 1.5 hours HH1)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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