Swissregulon:T.p1: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{SwissregulonMotif
|datasource=http://www.swissregulon.unibas.ch/
|name=T.p1
|associated_transcription_factors=0.994:6862:T:T, brachyury homolog (mouse):TBX:NM_003181:
|...") |
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{{SwissregulonMotif | {{SwissregulonMotif | ||
|associated_transcription_factors=0.994:6862:T:T, brachyury homolog (mouse):TBX:NM_003181: | |||
|datasource=http://www.swissregulon.unibas.ch/ | |datasource=http://www.swissregulon.unibas.ch/ | ||
|gostat_on_mara_hg19=GO:0044464!cell part!0.00892726576034402!221476;3802;83873;114899;84187;8470;1235;2001;3003;2892;607;221833;60495;6938;5803;2893;120;5980;10585;1606;92129;415117;11168;92;5914;273;22832;1262;4931;10766;162461;5320;23418;1641;5529;6935;29986;5150;204851;56062;6536;5983;10787;81565;3170;2551;81788;5364;221895;9848;26040;10521;171023;6508;8567;27023;92906;161003;55806;56980;56616;27287;10286;220296;6751;389015;64919;3575;79690;23390;117248;1740;64231;473;54465;51560;1392;9910;2115;216;1592;956$GO:0007215!glutamate signaling pathway!0.00892726576034402!2892;6751;2893$GO:0065007!biological regulation!0.00892726576034402!6935;204851;1235;3170;2001;51409;2551;81788;5364;6938;221895;171023;313;8567;3479;1606;92129;27023;55806;11168;56980;92;5914;56616;27287;220296;389015;6751;11095;64919;3575;23390;473;10766;9910;2115$GO:0050789!regulation of biological process!0.0156133637268361!6935;204851;3170;2001;51409;2551;81788;5364;6938;221895;171023;313;8567;3479;92129;27023;55806;11168;56980;92;5914;56616;27287;220296;6751;11095;64919;3575;23390;473;10766;9910;2115$GO:0007154!cell communication!0.0256924277465278!5150;56616;273;83873;6751;1235;3575;8491;2892;607;79690;23390;81788;5364;2893;64231;51384;51560;1606;3479;8567;9910;1392;23418;161003;1641;6351;92;5914;5529$GO:0032502!developmental process!0.0256924277465278!56616;27287;220296;10787;81565;81788;5364;6938;5803;5063;473;51384;10585;3479;8567;92129;1392;23418;1641;6351;92$GO:0050794!regulation of cellular process!0.0379395642038898!6935;56616;27287;204851;220296;6751;11095;3575;3170;2001;64919;2551;23390;81788;6938;221895;473;171023;3479;8567;92129;27023;10766;9910;55806;2115;11168;56980;92;5914 | |||
|gostat_on_mara_mm9=GO:0009653!anatomical structure morphogenesis!0.00806368163180118!224796;83813;214384;22414;15431;50884;15376;218772;225164;19378;13193;11668;56191;93746;15438$GO:0000187!activation of MAPK activity!0.00806368163180118!71920;70834;228355;224116$GO:0043406!positive regulation of MAP kinase activity!0.00908173426628641!71920;70834;228355;224116$GO:0009887!organ morphogenesis!0.0152687540172246!224796;214384;22414;15431;50884;19378;225164;218772;11668;15438$GO:0048562!embryonic organ morphogenesis!0.0152687540172246!218772;11668;50884$GO:0001758!retinal dehydrogenase activity!0.0152687540172246!19378;11668$GO:0043405!regulation of MAP kinase activity!0.0175370197306379!71920;70834;228355;224116$GO:0002009!morphogenesis of an epithelium!0.0182217803862909!225164;19378;11668;50884;15376$GO:0045859!regulation of protein kinase activity!0.0182217803862909!71920;11770;70834;228355;224116$GO:0048048!embryonic eye morphogenesis!0.0182217803862909!218772;11668$GO:0048598!embryonic morphogenesis!0.0182217803862909!218772;225164;224796;19378;11668;50884$GO:0051259!protein oligomerization!0.0182217803862909!77116;70834;224116$GO:0016331!morphogenesis of embryonic epithelium!0.0182217803862909!225164;19378;11668;50884$GO:0043549!regulation of kinase activity!0.0182217803862909!71920;11770;70834;228355;224116$GO:0048513!organ development!0.0182217803862909!224796;214384;22414;15431;50884;15376;13711;218772;225164;19378;12955;13193;11668;15438;93746$GO:0051338!regulation of transferase activity!0.0182217803862909!71920;11770;70834;228355;224116$GO:0004028!3-chloroallyl aldehyde dehydrogenase activity!0.0186925934384047!19378;11668$GO:0042573!retinoic acid metabolic process!0.022470751339334!19378;11668$GO:0045860!positive regulation of protein kinase activity!0.022470751339334!71920;70834;228355;224116$GO:0048568!embryonic organ development!0.0239463708554714!218772;11668;50884$GO:0033674!positive regulation of kinase activity!0.0251244610744691!71920;70834;228355;224116$GO:0051347!positive regulation of transferase activity!0.0251244610744691!71920;70834;228355;224116$GO:0043565!sequence-specific DNA binding!0.0251244610744691!212712;15431;14284;15376;13711;218772;14390;15438$GO:0007507!heart development!0.0344677385007521!218772;225164;19378;214384;50884$GO:0032502!developmental process!0.0381934263730813!224796;22414;50884;15376;13711;21413;12955;14390;74137;56191;15438;93746;83813;93735;214384;212712;15431;228355;19378;225164;218772;13193;11668;58194$GO:0001654!eye development!0.0381934263730813!218772;12955;19378;11668$GO:0031016!pancreas development!0.0414036635099004!19378;15376$GO:0030308!negative regulation of cell growth!0.0414036635099004!83813;56191$GO:0007423!sensory organ development!0.0424570769550931!218772;12955;224796;19378;11668 | |||
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|motif_activities_mm9=-0.689831732089,0.309108993521,0.0919862627187,0.481624754554,0.398472041688,0.187043916556,0.242037671221,-0.871183641827,-1.39474186586,-1.43336877203,-1.9115835318,-1.85532483168,-1.06069841729,-1.20055914395,-1.59581222123,-1.68421049343,-1.84301819057,-1.24027262495,-1.39035151003,-1.34030631925,-0.301673963751,-1.07213289087,-1.26743747972,-0.0511002013241,-0.153706395248,0.262595993359,-0.229313706423,0.429398274496,1.08901320804,0.942309833909,0.209064368399,-1.25350725917,-1.18973467666,-0.803925319296,0.144040692971,0.14346200831,0.231194416696,-1.45692722563,-1.28384145763,-1.19131338753,-1.51365734847,-1.53125356371,-1.17324260602,0.948345637868,0.676203509967,0.0636619607529,-1.0008924164,0.314518105718,0.273871936552,0.534042679568,0.337723364652,0.260018348967,-1.79312825841,-0.939343861173,-0.564015948922,0.91534130211,0.533578404307,0.592296314632,-0.884750374292,-0.356322364868,-0.763941007211,-0.400114342469,-0.387935031975,-2.10842200837,-1.99222363555,-2.19361000721,-1.18909534112,-1.19881493989,0.152669422746,0.648392047562,0.251427595582,-0.985783898835,-0.543858226905,0.863237597269,0.916325187928,0.975023021392,-0.607880967015,-0.844487028574,-0.810646489123,0.179746018303,0.446440372012,-0.0974040902429,-0.161796044188,-0.077818747462,0.000947388874438,-0.206592030048,-0.250772009281,-0.0624284401641,0.0266350735541,-0.184394951426,-0.357656686294,-1.14404021584,-0.134947943459,0.358651913347,0.0498801412657,-0.164121753285,0.764351275706,-0.128687183194,-0.400244290206,-0.193755009257,-0.537981504176,-0.503669717157,-0.964398147153,-0.252167194847,0.769681923908,0.629433098731,0.526121075403,1.09120619869,-1.31698845282,-1.59710867238,-0.951180101682,-0.717982099462,-0.99561615429,-1.19420134617,-1.16430680957,-1.51769848653,0.111895641239,-0.933500019171,-1.2087163145,-0.678467885691,-1.12987560466,-0.900058314889,2.13292955426,-0.580434055123,-0.78644685765,0.848073886246,-1.60003601668,-1.27908766757,-1.56485649114,-0.308199787625,0.0257955574727,0.666195732803,-0.643016271014,-0.939539852125,-0.297059048526,-0.70865311893,0.360617590551,-0.805678394189,-0.383463560618,-0.453937462884,-0.682240904904,-0.424163212583,-0.055455290982,0.198925521407,-0.39992569247,-0.511820238657,-0.5792225878,-0.54878492403,-0.128723150844,0.104915628307,0.0805314880939,0.294819557242,0.517956535248,1.4201697039,2.05303625499,0.363886210655,-1.25563171705,-1.52192179227,-1.31911100711,0.511586771946,1.03260323945,0.605430871945,0.786821601881,1.14701061968,1.39209472899,1.22522270783,1.09442301397,1.46315000992,0.657111033566,0.404131819172,0.125041947098,0.14845826322,0.157084714134,0.462512416468,-0.687085246162,-0.295474021645,0.864893986629,0.736618237094,-0.196610018619,0.129492564213,0.370882586022,0.224957288776,0.0301704811793,0.036445211498,0.714167370695,-0.181630696829,0.241627911434,0.817706292342,0.211766662385,0.95904982766,0.954476097363,0.576501234775,-0.43378423016,0.110129369652,0.444247928579,1.05278318746,0.520707041002,0.679644611017,1.15052220622,1.76871960379,1.31583673916,0.87955603074,0.227308621405,-0.687847403898,-0.977600567301,-1.10842191549,-0.8697465165,-0.655144819964,-0.177413486665,-0.205301084217,-1.11095486053,-0.893747660673,0.889604701053,-0.358351942707,-0.440732696639,-0.856850052908,-0.054386119597,-0.591914833871,1.22999651315,0.206995212555,0.600595792341,1.00189421004,1.25760837461,1.23303313987,1.43883801915,1.06572756977,1.19897106014,1.12844444999,0.421471461535,1.29525721601,0.967057281473,0.910832403915,-2.25313624742,-2.00703649234,-0.338074024795,0.0988084461088,-0.277529868605,-0.697373288777,-0.181830816439,-1.41929695485,-0.0800739206619,-0.231967185488,-0.212914695025,-0.512447576655,-0.410364258354,-0.543346584001,-0.351467446284,-0.420832884384,-0.359227380002,-1.52327359265,0.103459097589,0.137914703943,0.0640305953017,0.948186500816,0.154963313665,-0.0231095068542,0.412164300714,0.676105220881,-0.141922746694,0.162757464713,0.190698808748,0.12966547703,0.283919347026,0.3619289838,-0.209955062507,0.295385349439,-0.807424295555,-0.0814549649621,-0.133047554868,-0.234100487731,0.280613729281,-0.278993640141,-0.392175263287,-0.874477590544,-0.0501467685831,-0.664920957622,-0.485441448183,2.36289788775,2.39311342794,1.92425996086,2.21858942635,2.24674619288,0.926872380662,-0.230199703286,-1.49045026356,0.00364297024422,-0.805230886707,-1.15042743641,-1.31632259665,-1.87884108053,-1.33721759266,-1.3322460559,-1.22926147422,3.95107121191,-0.195652342286,0.61674744261,1.31920241302,2.38684301189,3.17291614877,2.75791368134,2.27235772209,2.70749889505,0.927743822331,0.129031861783,-1.68210990577,0.00927752448293,-0.185281039186,-0.124035750818,-0.858094570236,-0.0946439099834,-0.431455029996,-0.228842909193,-0.447224001435,-1.45456595951,-1.91158908908,-0.6759801747,0.181450976032,0.400152438423,0.31938165693,-0.234637431627,0.162121664195,-0.533412992872,-0.393424811487,-0.266536736566,-0.487032589498,-0.600560022905,-0.7202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| |||
|name=T.p1 | |name=T.p1 | ||
|weight_matrix=NA:T.p1;PO:A:C:G:T;01:9.052221:47.430075:22.552331:12.846182;02:12.304285:17.513038:6.06249:56.000996;03:77.279226:1.452755:7.842719:5.306109;04:6.047034:1.395986:78.571911:5.865878;05:4.857115:4.192168:80.740213:2.091313;06:2.307627:0.730149:3.230663:85.61237;07:0.730149:1.56366:84.449857:5.137143;08:5.55362:3.473554:4.105164:78.748471;09:8.126538:17.779566:55.246266:10.728439;10:82.051094:0.736267:5.025053:4.068395;11:61.005188:16.206995:7.7886:6.880026 | |weight_matrix=NA:T.p1;PO:A:C:G:T;01:9.052221:47.430075:22.552331:12.846182;02:12.304285:17.513038:6.06249:56.000996;03:77.279226:1.452755:7.842719:5.306109;04:6.047034:1.395986:78.571911:5.865878;05:4.857115:4.192168:80.740213:2.091313;06:2.307627:0.730149:3.230663:85.61237;07:0.730149:1.56366:84.449857:5.137143;08:5.55362:3.473554:4.105164:78.748471;09:8.126538:17.779566:55.246266:10.728439;10:82.051094:0.736267:5.025053:4.068395;11:61.005188:16.206995:7.7886:6.880026 | ||
}} | }} |
Latest revision as of 10:00, 17 April 2012
Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Motif Activities (MARA) on Phase1 data
hg19
Chart |
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Sample of clicked point: |
mm9
Z-value table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Chart |
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Sample of clicked point: |
GOStat results on predicted Motif target
hg19 | ||||||||||||||||
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mm9 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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