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{{CL
{{CL
|id=CL:0002568
|alt_id=
|name=mesenchymal stem cell of Wharton's jelly
|namespace=cell
|def="A mesenchymal stem cell that is part of Wharton's jelly." [GOC:tfm]
|xref=
|is_a=CL:0002569
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-01T09:51:18Z
|def="A mesenchymal stem cell that is part of Wharton's jelly." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002568
|is_a=CL:0002569
|is_obsolete=
|located_in=
|located_in=
|name=mesenchymal stem cell of Wharton's jelly
|namespace=FANTOM
|obo_creation_date=2011-03-01T09:51:18Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:mesenchymal stem cell of Wharton's jelly
Namespace:FANTOM
Definition:"A mesenchymal stem cell that is part of Wharton's jelly." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T09:51:18Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002569(mesenchymal stem cell of umbilical cord)



Children


derives from:FF:0000095 (human mesenchymal stem cell of Wharton's jelly sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002568 (mesenchymal stem cell of Wharton's jelly), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.23e-66FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_3a855a789b135de778fa20dea1eb0b62p@chr4:120446538..120446544, -
1.23e-66FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_3a855a789b135de778fa20dea1eb0b62p@chr4:120446538..120446544, -
2.42e-50FFCP PHASE2:Hg19::chr21:16209394..16209398,-#_367e438629250f03be7b81d92cd3b22ep@chr21:16209394..16209398, -
2.42e-50FFCP PHASE1:Hg19::chr21:16209394..16209398,-#_367e438629250f03be7b81d92cd3b22ep@chr21:16209394..16209398, -
3.99e-50FFCP PHASE2:Hg19::chr13:97775142..97775154,+#_2e812960bc28ffb1276f31d67ad8a5cfp@chr13:97775142..97775154, +
3.99e-50FFCP PHASE1:Hg19::chr13:97775142..97775154,+#_2e812960bc28ffb1276f31d67ad8a5cfp@chr13:97775142..97775154, +
6.58e-50FFCP PHASE1:Hg19::chr2:232030419..232030426,+#_21e28941424b51f6157716f5e0a2d82ap@chr2:232030419..232030426, +
6.58e-50FFCP PHASE2:Hg19::chr2:232030419..232030426,+#_21e28941424b51f6157716f5e0a2d82ap@chr2:232030419..232030426, +
9.91e-41FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_027e3dd405245ebc2166dc60774f49f9p25@COL12A1
9.91e-41FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_027e3dd405245ebc2166dc60774f49f9p25@COL12A1
2.21e-40FFCP PHASE1:Hg19::chr1:210612925..210612933,+#_40fb720da0d3bc418f82d2d992a4065ap15@HHAT
2.21e-40FFCP PHASE2:Hg19::chr10:72576503..72576516,+#_40fb720da0d3bc418f82d2d992a4065ap11@SGPL1
2.21e-40FFCP PHASE1:Hg19::chr10:72576503..72576516,+#_40fb720da0d3bc418f82d2d992a4065ap11@SGPL1
2.21e-40FFCP PHASE2:Hg19::chr1:210612925..210612933,+#_40fb720da0d3bc418f82d2d992a4065ap15@HHAT
3.3e-40FFCP PHASE1:Hg19::chr21:36749984..36749990,-#_4e616664bb06286eccf663183da8dea4p@chr21:36749984..36749990, -
3.3e-40FFCP PHASE2:Hg19::chr21:36749984..36749990,-#_4e616664bb06286eccf663183da8dea4p@chr21:36749984..36749990, -
1.84e-34FFCP PHASE2:Hg19::chr13:28896641..28896653,-#_caaaef4965a3a888024115a9b9bd3f2ep5@FLT1
1.84e-34FFCP PHASE1:Hg19::chr13:28896641..28896653,-#_caaaef4965a3a888024115a9b9bd3f2ep5@FLT1
2.58e-34FFCP PHASE1:Hg19::chr3:8989081..8989115,-#_403068b9b9c68b863e30c4b8a2855cacp@chr3:8989081..8989115, -
2.58e-34FFCP PHASE2:Hg19::chr3:8989081..8989115,-#_403068b9b9c68b863e30c4b8a2855cacp@chr3:8989081..8989115, -
9.85e-34FFCP PHASE2:Hg19::chr13:29293037..29293044,-#_ecdf37bbc912b0475714b5ffa5b8aaa8p7@SLC46A3
9.85e-34FFCP PHASE1:Hg19::chr13:29293037..29293044,-#_ecdf37bbc912b0475714b5ffa5b8aaa8p7@SLC46A3
9.99e-30FFCP PHASE1:Hg19::chr4:90332350..90332360,+#_af9966ba54946c8ece68a87c491a73d2p@chr4:90332350..90332360, +
9.99e-30FFCP PHASE2:Hg19::chr3:123383412..123383423,-#_af9966ba54946c8ece68a87c491a73d2p60@MYLK
9.99e-30FFCP PHASE2:Hg19::chr4:90332350..90332360,+#_af9966ba54946c8ece68a87c491a73d2p@chr4:90332350..90332360, +
9.99e-30FFCP PHASE1:Hg19::chr3:123383412..123383423,-#_af9966ba54946c8ece68a87c491a73d2p60@MYLK
2.78e-26FFCP PHASE2:Hg19::chr2:232030473..232030487,+#_2dd92dd95c3e4cc40df9dab8c575e43dp@chr2:232030473..232030487, +
2.78e-26FFCP PHASE1:Hg19::chr2:232030473..232030487,+#_2dd92dd95c3e4cc40df9dab8c575e43dp@chr2:232030473..232030487, +
5.93e-26FFCP PHASE2:Hg19::chr10:127738503..127738517,-#_e5dca6656029e40bd44b50af7dda978dp@chr10:127738503..127738517, -
5.93e-26FFCP PHASE1:Hg19::chr10:127738503..127738517,-#_e5dca6656029e40bd44b50af7dda978dp@chr10:127738503..127738517, -
7.62e-26FFCP PHASE2:Hg19::chr9:29213900..29213911,-#_4aacef89da6a1716222556e4895fbbd8p@chr9:29213900..29213911, -
7.62e-26FFCP PHASE1:Hg19::chr9:29213900..29213911,-#_4aacef89da6a1716222556e4895fbbd8p@chr9:29213900..29213911, -
1.26e-25FFCP PHASE2:Hg19::chr18:19756906..19756919,+#_bc9d5921a77cce0655e71ecd2a6a2583p@chr18:19756906..19756919, +
1.26e-25FFCP PHASE1:Hg19::chr18:19756906..19756919,+#_bc9d5921a77cce0655e71ecd2a6a2583p@chr18:19756906..19756919, +
2.1e-23FFCP PHASE2:Hg19::chr18:25545945..25545954,-#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr18:25545945..25545954, -
2.1e-23FFCP PHASE2:Hg19::chr5:81654586..81654599,+#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr5:81654586..81654599, +
2.1e-23FFCP PHASE1:Hg19::chr18:25545945..25545954,-#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr18:25545945..25545954, -
2.1e-23FFCP PHASE1:Hg19::chr5:81654586..81654599,+#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr5:81654586..81654599, +
5.13e-23FFCP PHASE1:Hg19::chr4:157298235..157298246,-#_ae8d29851d3225b1c499b84f10f276ffp@chr4:157298235..157298246, -
5.13e-23FFCP PHASE2:Hg19::chr4:157298235..157298246,-#_ae8d29851d3225b1c499b84f10f276ffp@chr4:157298235..157298246, -
5.13e-23FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_ae8d29851d3225b1c499b84f10f276ffp4@ENST00000443508
5.13e-23FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_ae8d29851d3225b1c499b84f10f276ffp4@ENST00000443508
6.4e-23FFCP PHASE2:Hg19::chr7:134345388..134345395,+#_1650ef6cf39043645f2fca7d5cd76cbap7@BPGM
6.4e-23FFCP PHASE1:Hg19::chr7:134345388..134345395,+#_1650ef6cf39043645f2fca7d5cd76cbap7@BPGM
1.53e-21FFCP PHASE1:Hg19::chr9:93271212..93271237,-#_fcd42226fec416ffec4443afee4b9ba9p@chr9:93271212..93271237, -
1.53e-21FFCP PHASE2:Hg19::chrX:8472595..8472610,-#_fcd42226fec416ffec4443afee4b9ba9p@chrX:8472595..8472610, -
1.53e-21FFCP PHASE1:Hg19::chrX:8472595..8472610,-#_fcd42226fec416ffec4443afee4b9ba9p@chrX:8472595..8472610, -
1.53e-21FFCP PHASE2:Hg19::chr9:93271212..93271237,-#_fcd42226fec416ffec4443afee4b9ba9p@chr9:93271212..93271237, -
2.82e-21FFCP PHASE2:Hg19::chr10:35701454..35701488,+#_c1e31c449646bcf0aefe13aadbc3ac0bp@chr10:35701454..35701488, +
2.82e-21FFCP PHASE1:Hg19::chr10:35701454..35701488,+#_c1e31c449646bcf0aefe13aadbc3ac0bp@chr10:35701454..35701488, +
7.72e-21FFCP PHASE2:Hg19::chr12:95267640..95267650,-#_9dfecf9a629d13473d465593843c85c2p@chr12:95267640..95267650, -
7.72e-21FFCP PHASE1:Hg19::chr12:95267640..95267650,-#_9dfecf9a629d13473d465593843c85c2p@chr12:95267640..95267650, -
1.3e-19FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_672754a7d49c9f83a75d059602e4ff3dp@chr4:1160761..1160774, -
1.3e-19FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_672754a7d49c9f83a75d059602e4ff3dp@chr4:1160761..1160774, -
1.88e-19FFCP PHASE1:Hg19::chr2:42161753..42161771,-#_be8a1cff6b3fee438fe594bf49fc6799p@chr2:42161753..42161771, -
1.88e-19FFCP PHASE2:Hg19::chr2:42161753..42161771,-#_be8a1cff6b3fee438fe594bf49fc6799p@chr2:42161753..42161771, -
2.25e-19FFCP PHASE2:Hg19::chr9:21974747..21974756,-#_0ca24a25ce302c70e06147b6328f78cfp27@CDKN2A
2.25e-19FFCP PHASE1:Hg19::chr2:39963869..39963884,-#_0ca24a25ce302c70e06147b6328f78cfp@chr2:39963869..39963884, -
2.25e-19FFCP PHASE1:Hg19::chr9:21974747..21974756,-#_0ca24a25ce302c70e06147b6328f78cfp27@CDKN2A
2.25e-19FFCP PHASE2:Hg19::chr2:39963869..39963884,-#_0ca24a25ce302c70e06147b6328f78cfp@chr2:39963869..39963884, -
2.71e-19FFCP PHASE2:Hg19::chr13:76222103..76222108,+#_ab8cd9e541ef5cc101f0f4708b2970dcp@chr13:76222103..76222108, +
2.71e-19FFCP PHASE1:Hg19::chr13:76222103..76222108,+#_ab8cd9e541ef5cc101f0f4708b2970dcp@chr13:76222103..76222108, +
3.91e-19FFCP PHASE2:Hg19::chr10:33281363..33281383,-#_8e02629aeafab0e400c1b649dbcdf2e5p14@ITGB1
3.91e-19FFCP PHASE1:Hg19::chr10:33281363..33281383,-#_8e02629aeafab0e400c1b649dbcdf2e5p14@ITGB1
5.62e-19FFCP PHASE1:Hg19::chr9:12698542..12698573,+#_7e0f7b1112fc042ba3d4f3737921f949p16@TYRP1
5.62e-19FFCP PHASE2:Hg19::chr10:93320563..93320567,-#_7e0f7b1112fc042ba3d4f3737921f949p@chr10:93320563..93320567, -
5.62e-19FFCP PHASE1:Hg19::chr10:93320563..93320567,-#_7e0f7b1112fc042ba3d4f3737921f949p@chr10:93320563..93320567, -
5.62e-19FFCP PHASE2:Hg19::chr9:12698542..12698573,+#_7e0f7b1112fc042ba3d4f3737921f949p16@TYRP1
3.16e-18FFCP PHASE2:Hg19::chr2:232030447..232030460,+#_3ec7c761630de3a2548c513102c8d5a7p@chr2:232030447..232030460, +
3.16e-18FFCP PHASE2:Hg19::chrX:8472470..8472482,-#_3ec7c761630de3a2548c513102c8d5a7p@chrX:8472470..8472482, -
3.16e-18FFCP PHASE1:Hg19::chrX:8472470..8472482,-#_3ec7c761630de3a2548c513102c8d5a7p@chrX:8472470..8472482, -
3.16e-18FFCP PHASE2:Hg19::chr3:123383492..123383500,-#_3ec7c761630de3a2548c513102c8d5a7p57@MYLK
3.16e-18FFCP PHASE1:Hg19::chr2:232030447..232030460,+#_3ec7c761630de3a2548c513102c8d5a7p@chr2:232030447..232030460, +
3.16e-18FFCP PHASE1:Hg19::chr3:123383492..123383500,-#_3ec7c761630de3a2548c513102c8d5a7p57@MYLK
7.37e-18FFCP PHASE1:Hg19::chr1:206817396..206817400,+#_42b0e57d47890a7c1bde800efa262e20p@chr1:206817396..206817400, +
7.37e-18FFCP PHASE2:Hg19::chr1:206817396..206817400,+#_42b0e57d47890a7c1bde800efa262e20p@chr1:206817396..206817400, +
7.37e-18FFCP PHASE2:Hg19::chr11:75719740..75719766,+#_42b0e57d47890a7c1bde800efa262e20p@chr11:75719740..75719766, +
7.37e-18FFCP PHASE1:Hg19::chr11:75719740..75719766,+#_42b0e57d47890a7c1bde800efa262e20p@chr11:75719740..75719766, +
8.72e-18FFCP PHASE2:Hg19::chr7:41729687..41729699,-#_6e6c07481fab12b3a604a4d796c0d6f1p15@INHBA
8.72e-18FFCP PHASE1:Hg19::chr7:41729687..41729699,-#_6e6c07481fab12b3a604a4d796c0d6f1p15@INHBA
1.44e-17FFCP PHASE2:Hg19::chr10:127713413..127713421,-#_2682bc08a539457ca37815a3f69cba56p@chr10:127713413..127713421, -
1.44e-17FFCP PHASE1:Hg19::chr10:127713413..127713421,-#_2682bc08a539457ca37815a3f69cba56p@chr10:127713413..127713421, -
1.7e-17FFCP PHASE1:Hg19::chr7:121713743..121713746,-#_954b7ff8764f48a866b49fc49e926dfbp@chr7:121713743..121713746, -
1.7e-17FFCP PHASE2:Hg19::chr2:134325832..134325855,-#_954b7ff8764f48a866b49fc49e926dfbp7@NCKAP5
1.7e-17FFCP PHASE2:Hg19::chr7:121713743..121713746,-#_954b7ff8764f48a866b49fc49e926dfbp@chr7:121713743..121713746, -
1.7e-17FFCP PHASE1:Hg19::chr2:134325832..134325855,-#_954b7ff8764f48a866b49fc49e926dfbp7@NCKAP5
5.53e-17FFCP PHASE2:Hg19::chr1:192735472..192735488,-#_bef487614584962c06b0bae1d2e32354p@chr1:192735472..192735488, -
5.53e-17FFCP PHASE1:Hg19::chr1:192735472..192735488,-#_bef487614584962c06b0bae1d2e32354p@chr1:192735472..192735488, -
8.86e-17FFCP PHASE2:Hg19::chr14:79746061..79746074,+#_6a92589d4a022b4b18d6582724753bebp9@NRXN3
8.86e-17FFCP PHASE1:Hg19::chr14:79746061..79746074,+#_6a92589d4a022b4b18d6582724753bebp9@NRXN3
1.93e-16FFCP PHASE1:Hg19::chr2:197143137..197143140,-#_efbba3227587e080d15ab97cf25c1a32p@chr2:197143137..197143140, -
1.93e-16FFCP PHASE2:Hg19::chr2:197143137..197143140,-#_efbba3227587e080d15ab97cf25c1a32p@chr2:197143137..197143140, -
2.25e-16FFCP PHASE2:Hg19::chr3:133131715..133131731,-#_865fed2551de55d50bf1457fef72f435p2@BC040919
2.25e-16FFCP PHASE2:Hg19::chr14:79746108..79746120,+#_865fed2551de55d50bf1457fef72f435p10@NRXN3
2.25e-16FFCP PHASE1:Hg19::chr14:79746108..79746120,+#_865fed2551de55d50bf1457fef72f435p10@NRXN3
2.25e-16FFCP PHASE1:Hg19::chr3:133131715..133131731,-#_865fed2551de55d50bf1457fef72f435p2@BC040919
3.07e-16FFCP PHASE1:Hg19::chr5:22560465..22560471,+#_b938bb2ce599266d2ca1d9ab3cdafb85p@chr5:22560465..22560471, +
3.07e-16FFCP PHASE2:Hg19::chr5:22560465..22560471,+#_b938bb2ce599266d2ca1d9ab3cdafb85p@chr5:22560465..22560471, +
2.38e-15FFCP PHASE2:Hg19::chr9:103340443..103340454,+#_eb12de81a48ff54faa822b5b72a90081p4@MURC
2.38e-15FFCP PHASE1:Hg19::chr9:103340443..103340454,+#_eb12de81a48ff54faa822b5b72a90081p4@MURC

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